TEs and my data

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Last updated: 2025-01-29

Checks: 7 0

Knit directory: ATAC_learning/

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Ignored files:
    Ignored:    .RData
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/ACresp_SNP_table.csv
    Ignored:    data/ARR_SNP_table.csv
    Ignored:    data/All_merged_peaks.tsv
    Ignored:    data/CAD_gwas_dataframe.RDS
    Ignored:    data/CTX_SNP_table.csv
    Ignored:    data/Collapsed_expressed_NG_peak_table.csv
    Ignored:    data/DEG_toplist_sep_n45.RDS
    Ignored:    data/FRiP_first_run.txt
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    Ignored:    data/Ind1_summary.txt
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    Ignored:    data/Ind2_peaks_list.RDS
    Ignored:    data/Ind2_summary.txt
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    Ignored:    data/Ind3_fragment_files.txt
    Ignored:    data/Ind3_peaks_list.RDS
    Ignored:    data/Ind3_summary.txt
    Ignored:    data/Ind4_79B24h_dedup_peaks.csv
    Ignored:    data/Ind4_TSS_peaks.RDS
    Ignored:    data/Ind4_V24h_fraglength.txt
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    Ignored:    data/Ind4_peaks_list.RDS
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    Ignored:    data/Ind6_TSS_peaks.RDS
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    Ignored:    data/Knowles_4.RDS
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    Ignored:    data/LiSiLTDNRe_TE_df.RDS
    Ignored:    data/MI_gwas.RDS
    Ignored:    data/SNP_GWAS_PEAK_MRC_id
    Ignored:    data/SNP_GWAS_PEAK_MRC_id.csv
    Ignored:    data/SNP_gene_cat_list.tsv
    Ignored:    data/SNP_supp_schneider.RDS
    Ignored:    data/TE_info/
    Ignored:    data/TFmapnames.RDS
    Ignored:    data/all_TSSE_scores.RDS
    Ignored:    data/all_four_filtered_counts.txt
    Ignored:    data/aln_run1_results.txt
    Ignored:    data/anno_ind1_DA24h.RDS
    Ignored:    data/anno_ind4_V24h.RDS
    Ignored:    data/annotated_gwas_SNPS.csv
    Ignored:    data/background_n45_he_peaks.RDS
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    Ignored:    data/ind1_DA24hpeaks.RDS
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    Ignored:    data/motif_list_full
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    Ignored:    data/siglist_full.RDS
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    Ignored:    data/toplist_6.RDS
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Untracked files:
    Untracked:  analysis/Expressed_RNA_associations.Rmd
    Untracked:  analysis/LFC_corr.Rmd
    Untracked:  analysis/SVA.Rmd
    Untracked:  analysis/Tan2020.Rmd
    Untracked:  analysis/my_hc_filt_counts.csv
    Untracked:  code/IGV_snapshot_code.R
    Untracked:  code/LongDARlist.R
    Untracked:  code/MRC_clusterlog2cpm.R
    Untracked:  code/TSSE.R
    Untracked:  code/just_for_Fun.R
    Untracked:  code/toplist_assembly.R
    Untracked:  output/cormotif_probability_45_list.csv
    Untracked:  output/cormotif_probability_all_6_list.csv
    Untracked:  setup.RData

Unstaged changes:
    Modified:   ATAC_learning.Rproj
    Modified:   analysis/Correlation_of_SNPnPEAK.Rmd
    Modified:   analysis/final_plot_attempt.Rmd
    Modified:   analysis/index.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/TE_analysis_ff.Rmd) and HTML (docs/TE_analysis_ff.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	527fb7c	E. Renee Matthews	2025-01-29	update to plot
html	54d28ca	E. Renee Matthews	2025-01-28	Build site.
Rmd	dde22cd	E. Renee Matthews	2025-01-28	updates to legend
Rmd	84c2d63	reneeisnowhere	2024-11-14	adding in commits
html	faf0654	reneeisnowhere	2024-10-11	Build site.
Rmd	4e08bc9	reneeisnowhere	2024-10-11	redo images
html	d6fe7e3	reneeisnowhere	2024-10-07	Build site.
Rmd	85469bc	reneeisnowhere	2024-10-07	adding pdf
html	6dfe33e	reneeisnowhere	2024-09-23	Build site.
Rmd	365e557	reneeisnowhere	2024-09-23	updated group of eight based on 4 individuals
html	23374bd	reneeisnowhere	2024-09-13	Build site.
Rmd	617aa1e	reneeisnowhere	2024-09-13	updated peaklist filtering fixed
Rmd	ff2f378	reneeisnowhere	2024-09-12	fixing additional calculation problems
Rmd	b7f8719	reneeisnowhere	2024-09-12	fixing additional calculation problems
Rmd	1ae2a63	reneeisnowhere	2024-09-10	updates
html	6d65dd6	reneeisnowhere	2024-09-09	Build site.
Rmd	cc49b3b	reneeisnowhere	2024-09-09	updated with new peak file
Rmd	6e09040	reneeisnowhere	2024-09-08	updated with new peaks

---

library(tidyverse)
library(kableExtra)
library(broom)
library(RColorBrewer)
library(ChIPseeker)
library("TxDb.Hsapiens.UCSC.hg38.knownGene")
library("org.Hs.eg.db")
library(rtracklayer)
library(edgeR)
library(ggfortify)
library(limma)
library(readr)
library(BiocGenerics)
library(gridExtra)
library(VennDiagram)
library(scales)
library(BiocParallel)
library(ggpubr)
library(devtools)
library(biomaRt)
library(eulerr)
library(smplot2)
library(genomation)
library(ggsignif)
library(plyranges)
library(ggrepel)
library(epitools)
library(circlize)
library(ggridges)

loading data

This is where I pull in the repeatmasker file taken from UCSC genome browser, the peaks assigned with the closest expressed genes as ‘neargenes’ by TSS, the same peaks list, only condensing to unique peaks (some are assigned to two neargene), I call the collapsed_peaks and the peaks assigned to each MRC (EAR, etc…).
With the TSS data and the collapsed data, I made granges objects. I also separate out the LINEs, SINEs, LTRs, DNAs, and Retroposons from the repeatmasker to make granges objects from those sets.

repeatmasker <- read.delim("data/other_papers/repeatmasker.tsv")

### With new TSS_ngdata frame
TSS_NG_data <- read_delim("data/Final_four_data/TSS_assigned_NG.txt", 
    delim = "\t", escape_double = FALSE, 
    trim_ws = TRUE)
Collapsed_peaks <- read_delim("data/Final_four_data/collapsed_new_peaks.txt",
                              delim = "\t", 
                              escape_double = FALSE, 
                              trim_ws = TRUE)

reClass_list <- repeatmasker %>% 
  distinct(repClass)

Line_repeats <- repeatmasker %>% 
  dplyr::filter(repClass == "LINE") %>% 
 makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)

Sine_repeats <- repeatmasker %>% 
  dplyr::filter(repClass == "SINE") %>% 
 makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)

LTR_repeats <- repeatmasker %>% 
  dplyr::filter(repClass == "LTR") %>% 
 makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)

DNA_repeats <- repeatmasker %>% 
  dplyr::filter(repClass == "DNA") %>% 
 makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)

retroposon_repeats <- repeatmasker %>% 
  dplyr::filter(repClass == "Retroposon") %>% 
 makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)


all_TEs_gr <- repeatmasker %>% 
 makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)


peakAnnoList_ff_motif <- readRDS("data/Final_four_data/peakAnnoList_ff_motif.RDS")

background_peaks <- as.data.frame(peakAnnoList_ff_motif$background) 
EAR_df <- as.data.frame(peakAnnoList_ff_motif$EAR)
# EAR_df_gr <-  EAR_df %>%  GRanges()
ESR_df <- as.data.frame(peakAnnoList_ff_motif$ESR)
# ESR_df_gr <-ESR_df %>%  GRanges()

LR_df <- as.data.frame(peakAnnoList_ff_motif$LR)
# LR_df_gr <-LR_df %>%  GRanges()

NR_df <- as.data.frame(peakAnnoList_ff_motif$NR)
# NR_df_gr <-NR_df %>%  GRanges()

TSS_data_gr <- TSS_NG_data %>% 
  # dplyr::filter(chr != "chrX") %>%
  dplyr::filter(chr != "chrY") %>%
  dplyr::filter(Peakid %in% background_peaks$Peakid) %>% 
  GRanges()

Col_TSS_data_gr <- Collapsed_peaks %>% 
  # dplyr::filter(chr != "chrX") %>%
  dplyr::filter(chr != "chrY") %>%
  dplyr::filter(Peakid %in% background_peaks$Peakid) %>% 
  GRanges()

this code contains the fill functions for each of the plots that needed similar colors.

# scale fill repeat, 2nd set ----------------------------------------------
rep_other_names<- repeatmasker %>% 
  distinct(repClass) %>% 
  rbind("Other")

scale_fill_repeat <-  function(...){
  ggplot2:::manual_scale(
    'fill', 
    values = setNames(c( "#8DD3C7",
                         "#FFFFB3",
                         "#BEBADA" ,
                         "#FB8072",
                         "#80B1D3",
                         "#FDB462",
                         "#B3DE69",
                         "#FCCDE5",
                         "#D9D9D9",
                         "#BC80BD",
                         "#CCEBC5",
                         "pink4",
                         "cornflowerblue",
                         "chocolate",
                         "brown",
                         "green",
                         "yellow4",
                         "purple",
                         "darkorchid4",
                         "coral4",
                         "darkolivegreen4",
                         "darkorange",
                         "darkgrey"), unique(rep_other_names$repClass)), 
    ...
  )
}


# scale fill LTRs ---------------------------------------------------------

LTR_df <- LTR_repeats %>% 
  as.data.frame() %>% 
  mutate(repFamily=factor(repFamily))


scale_fill_LTRs <-  function(...){
  ggplot2:::manual_scale(
    'fill', 
    values = setNames(c( "#8DD3C7",
                         "#FFFFB3",
                         "#BEBADA" ,
                         "#FB8072",
                         "#80B1D3",
                         "#FDB462",
                         "#B3DE69",
                         "#FCCDE5",
                         "#D9D9D9",
                         "#BC80BD",
                         "#CCEBC5",
                         "pink4",
                         "cornflowerblue",
                         "chocolate",
                         "brown",
                         "green",
                         "yellow4",
                         "purple",
                         "darkorchid4",
                         "coral4",
                         "darkolivegreen4",
                         "darkorange"), unique(LTR_df$repFamily)), 
    ...
  )
}



scale_fill_DNA_family <-  function(...){
  ggplot2:::manual_scale(
    'fill', 
    values = setNames(c( "#8DD3C7", "#FFFFB3", "#BEBADA" ,"#FB8072", "#80B1D3", "#FDB462", "#B3DE69", "#FCCDE5", "purple4"), unique(DNA_family$repFamily)), 
    ...
  )
}


# # scale fill repeat first -------------------------------------------------
# 
# scale_fill_repeat <-  function(...){
#   ggplot2:::manual_scale(
#     'fill', 
#     values = setNames(c( "#8DD3C7",
#                          "#FFFFB3",
#                          "#BEBADA" ,
#                          "#FB8072",
#                          "#80B1D3",
#                          "#FDB462",
#                          "#B3DE69",
#                          "#FCCDE5",
#                          "#D9D9D9",
#                          "#BC80BD",
#                          "#CCEBC5",
#                          "pink4",
#                          "cornflowerblue",
#                          "chocolate",
#                          "brown",
#                          "green",
#                          "yellow4",
#                          "purple",
#                          "darkorchid4",
#                          "coral4",
#                          "darkolivegreen4",
#                          "darkorange"), unique(repeatmasker$repClass)), 
#     ...
#   )
# }

# scale lines -------------------------------------------------------------
Line_df <- Line_repeats %>% 
  as.data.frame() %>% 
  mutate(repFamily=factor(repFamily))


scale_fill_lines <-  function(...){
  ggplot2:::manual_scale(
    'fill', 
    values = setNames(c( "#8DD3C7",
                         "#FFFFB3",
                         "#BEBADA" ,
                         "#FB8072",
                         "#80B1D3",
                         "#FDB462",
                         "#B3DE69",
                         "#FCCDE5",
                         "#D9D9D9",
                         "#BC80BD",
                         "#CCEBC5",
                         "pink4",
                         "cornflowerblue",
                         "chocolate",
                         "brown",
                         "green",
                         "yellow4",
                         "purple",
                         "darkorchid4",
                         "coral4",
                         "darkolivegreen4",
                         "darkorange"), unique(Line_df$repFamily)), 
    ...
  )
}


# scale fill L2 family ----------------------------------------------------
L2_line_df<- Line_df %>% 
  dplyr::filter(repFamily=="L2")


scale_fill_L2 <-  function(...){
  ggplot2:::manual_scale(
    'fill', 
    values = setNames(c( "#8DD3C7",
                         "#FFFFB3",
                         "#BEBADA" ,
                         "#FB8072",
                         "#80B1D3",
                         "#FDB462",
                         "#B3DE69",
                         "#FCCDE5",
                         "#D9D9D9",
                         "#BC80BD",
                         "#CCEBC5",
                         "pink4",
                         "cornflowerblue",
                         "chocolate",
                         "brown",
                         "green",
                         "yellow4",
                         "purple",
                         "darkorchid4",
                         "coral4",
                         "darkolivegreen4",
                         "darkorange"), unique(L2_line_df$repName)), 
    ...
  )
}

# scale fill sines --------------------------------------------------------
Sine_df <- Sine_repeats %>% 
  as.data.frame() %>% 
  mutate(repFamily=factor(repFamily))


scale_fill_sines <-  function(...){
  ggplot2:::manual_scale(
    'fill', 
    values = setNames(c( "#8DD3C7",
                         "#FFFFB3",
                         "#BEBADA" ,
                         "#FB8072",
                         "#80B1D3",
                         "#FDB462",
                         "#B3DE69",
                         "#FCCDE5",
                         "#D9D9D9",
                         "#BC80BD",
                         "#CCEBC5",
                         "pink4",
                         "cornflowerblue",
                         "chocolate",
                         "brown",
                         "green",
                         "yellow4",
                         "purple",
                         "darkorchid4",
                         "coral4",
                         "darkolivegreen4",
                         "darkorange"), unique(Sine_df$repFamily)), 
    ...
  )
}


# scale fill DNAs ---------------------------------------------------------
DNA_df <- DNA_repeats %>% 
  as.data.frame() %>% 
  mutate(repFamily=factor(repFamily))


scale_fill_DNAs <-  function(...){
  ggplot2:::manual_scale(
    'fill', 
    values = setNames(c( "#8DD3C7",
                         "#FFFFB3",
                         "#BEBADA" ,
                         "#FB8072",
                         "#80B1D3",
                         "#FDB462",
                         "#B3DE69",
                         "#FCCDE5",
                         "#D9D9D9",
                         "#BC80BD",
                         "#CCEBC5",
                         "pink4",
                         "cornflowerblue",
                         "chocolate",
                         "brown",
                         "green",
                         "yellow4",
                         "purple",
                         "darkorchid4",
                         "coral4",
                         "darkolivegreen4",
                         "darkorange",
                         "blue",
                         "grey",
                         "lightgrey"), unique(DNA_df$repFamily)), 
    ...
  )
}


# scale fill retroposons --------------------------------------------------

retroposon_df <- retroposon_repeats %>% 
  as.data.frame() %>% 
  mutate(repName=factor(repName))

scale_fill_retroposons <-  function(...){
  ggplot2:::manual_scale(
    'fill', 
    values = setNames(c( "#8DD3C7",
                         "#FFFFB3",
                         "#BEBADA" ,
                         "#FB8072",
                         "#80B1D3",
                         "#FDB462",
                         "#B3DE69",
                         "#FCCDE5",
                         "#D9D9D9",
                         "#BC80BD",
                         "#CCEBC5",
                         "pink4",
                         "cornflowerblue",
                         "chocolate",
                         "brown",
                         "green",
                         "yellow4",
                         "purple",
                         "darkorchid4",
                         "coral4",
                         "darkolivegreen4",
                         "darkorange"), unique(retroposon_df$repName)), 
    ...
  )
}

TE distrubution:

The code below uses the TE data sets to create dataframes that contain all peaks that overlap a TE. Additionally, I wanted to know size distribution of the overlaps(width) between TEs and my peaks, the size of the TEs and their size distribution, and the size distribution of my peaks. This was to determine a cutoff across TEs to minimize size bias. We used this data to apply a inclusion stringency cutoff for TEs of >50% of the full TE needed to be covered by a peak to call the peak “TE-containing”. In the plots, the median of each density distribution is shown by the dotted line.

all_TEs_gr %>% 
  as.data.frame() %>% 
  mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(repClass=="LINE") %>% 
  ggplot(., aes(x=width))+
    geom_density(aes(fill=repClass, alpha = 0.5))+
  geom_vline(aes(xintercept = median(width)), linetype = 2)+
  theme_classic()+
  ggtitle("Distribution of lengths of all LINEs across human genome",subtitle = " limited x axis")+
  coord_cartesian(xlim= c(0,2500))

Past versions of "data about TEs-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6d65dd6	reneeisnowhere	2024-09-09

all_TEs_gr %>% 
  as.data.frame() %>% 
  mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(repClass=="SINE") %>% 
  ggplot(., aes(x=width))+
    geom_density(aes(fill=repClass, alpha = 0.5))+
   geom_vline(aes(xintercept = median(width)), linetype = 2)+
  theme_classic()+
  ggtitle("Distribution of lengths of all SINEs across human genome")

Past versions of "data about TEs-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6d65dd6	reneeisnowhere	2024-09-09

all_TEs_gr %>% 
  as.data.frame() %>% 
  mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(repClass=="LTR") %>% 
  ggplot(., aes(x=width))+
    geom_density(aes(fill=repClass, alpha = 0.5))+
   geom_vline(aes(xintercept = median(width)), linetype = 2)+
  theme_classic()+
  ggtitle("Distribution of lengths of all LTRs across human genome",subtitle = " limited x axis")+
  coord_cartesian(xlim= c(0,2500))

Past versions of "data about TEs-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6d65dd6	reneeisnowhere	2024-09-09

all_TEs_gr %>% 
  as.data.frame() %>% 
  mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(repClass=="DNA") %>% 
  ggplot(., aes(x=width))+
    geom_density(aes(fill=repClass, alpha = 0.5))+
   geom_vline(aes(xintercept = median(width)), linetype = 2)+
  theme_classic()+
  ggtitle("Distribution of lengths of all DNA-TEs across human genome",subtitle = " limited x axis")+
  coord_cartesian(xlim= c(0,2500))

Past versions of "data about TEs-4.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6d65dd6	reneeisnowhere	2024-09-09

all_TEs_gr %>% 
  as.data.frame() %>% 
  mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(repClass=="Retroposon") %>% 
  ggplot(., aes(x=width))+
    geom_density(aes(fill=repClass,alpha = 0.5))+
   geom_vline(aes(xintercept = median(width)), linetype = 2)+
  theme_classic()+
  ggtitle("Distribution of lengths of all Retroposons across human genome",subtitle = " limited x axis")+
   coord_cartesian(xlim= c(0,2500))

Past versions of "data about TEs-5.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6d65dd6	reneeisnowhere	2024-09-09

all_TEs_gr %>% 
  as.data.frame() %>% 
  dplyr::select(repClass, width) %>% 
  # dplyr::filter(repClass=="LTR") %>%
  group_by(repClass) %>% 
  summarise(med.width=median(width),mean.width=mean(width)) %>% 
  kable(., caption="Table 1: Summary of mean and median length of each TE Class") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)

Table 1: Summary of mean and median length of each TE Class

repClass	med.width	mean.width
DNA	155.0	210.61264
DNA?	125.0	137.59542
LINE	219.0	421.99752
LTR	329.0	371.36349
LTR?	170.0	208.63493
Low_complexity	44.0	61.55669
RC	171.0	210.89231
RC?	144.0	150.47242
RNA	165.0	163.94730
Retroposon	646.0	776.24171
SINE	258.0	221.43075
SINE?	83.5	74.34211
Satellite	496.0	8741.48243
Simple_repeat	36.0	55.83912
Unknown	119.0	136.70621
rRNA	86.0	140.04608
scRNA	99.0	96.07143
snRNA	77.5	79.82394
srpRNA	136.0	169.81834
tRNA	69.0	60.12893

Col_TSS_data_gr %>% 
  as.data.frame %>% 
   ggplot(., aes(x=width))+
    geom_density(color="darkblue",fill="lightblue",aes(alpha = 0.5))+
  geom_vline(data=Col_TSS_data_gr$width., aes(xintercept = median(width)), linetype = 2)+
  theme_classic()+
  ggtitle("Distribution of peak length (bps) across all experimentally derived peaks",subtitle = " limited x axis")+
  coord_cartesian(xlim= c(0,2500))

Past versions of "data about TEs-6.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

fullDF_overlap <- join_overlap_intersect(TSS_data_gr,all_TEs_gr)

fullDF_overlap %>% 
  as.data.frame() %>% 
  group_by(repClass) %>%  
  tally %>% 
  kable(., caption="Table 2: Count of peaks by TE class; overlap 1 bp or greater") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)

subsetByOverlaps(TSS_data_gr,all_TEs_gr) %>% as.data.frame %>% 
   ggplot(., aes(x=width))+
    geom_density(color="darkblue",fill="lightblue",aes(alpha = 0.5))+
   geom_vline(aes(xintercept = median(width)), linetype = 2)+
  theme_classic()+
  ggtitle("Distribution of overlaps between all TEs and all my peaks",subtitle = " limited x axis")+
  coord_cartesian(xlim= c(0,2500))

### This is how I subset only those peaks who cover >50% of TEs
# hits <- findOverlaps(TSS_data_gr,all_TEs_gr)
# overlaps <- pintersect(TSS_data_gr[queryHits(hits)], all_TEs_gr[subjectHits(hits)])
# percentOverlap <- width(overlaps) / width(all_TEs_gr[subjectHits(hits)])
# hits <- hits[percentOverlap > 0.5]
# ### THis actually did not work well---I ended up losing data.  What I wanted was a data frame that had metadata from both the TE overlap and the peak metadata, so I could easily sort and manipulation.  
# testingol <- TSS_data_gr[queryHits(hits)]
# testingol %>% as.data.frame() %>% 
#   left_join(., (fullDF_overlap %>% as.data.frame(.)), by =c("seqnames"="seqnames","start"="start","end"="end","Peakid"="Peakid", "NG_start"="NG_start", "end_position"="end_position", "entrezgene_id"="entrezgene_id", "ensembl_gene_id"="ensembl_gene_id","dist_to_NG"="dist_to_NG", "width"="width", "strand"="strand", "hgnc_symbol" = "hgnc_symbol")) %>% 
#   group_by(repClass) %>% 
#   tally %>% 
#   kable(., caption=" Table 3: Count of peaks by TE class; overlap> 50%") %>% 
#   kable_paper("striped", full_width = TRUE) %>%
#   kable_styling(full_width = FALSE, font_size = 14)

The first dataframe to subset peaks that overlap >50% of a TE, was using the full neargene dataframe, where a peak is listed more than once because it was assigned more than one neargene ( one-to-many relationships). I changed the code to use the ‘collapsed’ data frame. This means the data frame was simplified to only include peaks one time, but those peaks that were assigned to more than one neargene had the assigned neargenes condensed and separated by a comma into the same column to create a one-to-one relationship dataframe. (yes, wordy I know)

######################################################
all_TEs_gr$TE_width <- width(all_TEs_gr)
Col_TSS_data_gr$peak_width <- width(Col_TSS_data_gr)
Col_fullDF_overlap <- join_overlap_intersect(Col_TSS_data_gr,all_TEs_gr)
Col_fullDF_overlap %>% 
  as.data.frame() %>% 
  group_by(repClass) %>%  
  tally %>% 
  kable(., caption=" Table 2: Count of peaks by TE class; overlap at least 1 bp; using one:one df ") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)

Table 2: Count of peaks by TE class; overlap at least 1 bp; using one:one df

repClass	n
DNA	16960
DNA?	138
LINE	40440
LTR	27844
LTR?	257
Low_complexity	5731
RC	52
RC?	9
RNA	28
Retroposon	295
SINE	52755
SINE?	1
Satellite	191
Simple_repeat	30184
Unknown	288
rRNA	54
scRNA	32
snRNA	144
srpRNA	44
tRNA	302

Col_fullDF_overlap %>% 
   as.data.frame %>% 
  mutate(per_ol= width/TE_width) %>% 
  dplyr::filter(per_ol>0.5) %>%
  group_by(repClass) %>% 
  tally() %>% 
  kable(., caption=" Table 3:Count of peaks by TE class; overlap of >50% of TE; newway ") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)

Table 3:Count of peaks by TE class; overlap of >50% of TE; newway

repClass	n
DNA	11821
DNA?	118
LINE	25548
LTR	18403
LTR?	199
Low_complexity	5305
RC	41
RC?	7
RNA	22
Retroposon	81
SINE	31936
SINE?	1
Satellite	81
Simple_repeat	28143
Unknown	242
rRNA	44
scRNA	24
snRNA	124
srpRNA	31
tRNA	291

Filter_TE_list <- Col_fullDF_overlap %>% 
   as.data.frame %>% 
  mutate(per_ol= width/TE_width) 
  # dplyr::filter(per_ol>0.5)

Unique_peak_overlap <- Col_fullDF_overlap %>%
  as.data.frame() %>%
  distinct(Peakid)

peak_overlap_50unique <-  Filter_TE_list %>%
   dplyr::filter(per_ol>0.5) %>% 
  distinct(Peakid)

Note that the counts of peaks total to more than the total number of peaks that overlap a TE because many peaks overlap multiple elements (generally the very small TEs).

A summary of numbers of peaks is below:

• Total number of peaks = 172481
• Total number of peaks overlapping at least 1 TE = 104149
  
• Total number of peaks overlapping by >50% TE length = 81185
  note these numbers include peaks that are not classified by an MRC.

Tables 3 above used the better way of sub-setting (keeping all metadata organized vs the sub-setting code I found on the internet).

Distribution of TE overlaps by peaks according to class

Below are plots of the distribution of overlapping widths between peaks and TEs. The first plot is all TE Class, and the 2nd plot limits the classes to LINEs, SINEs, LTRs, DNAs, and Retroposons.

Col_fullDF_overlap %>%  
  as.data.frame %>% 
  ggplot(., aes(x=width, fill=repClass))+
    geom_density(color="darkblue",aes(alpha = 0.5))+
  theme_classic()+
  ggtitle("Distribution of all overlapping widths in my data",subtitle = " limited x axis")+
  coord_cartesian(xlim= c(0,750))+
  scale_fill_repeat()

Past versions of "another set of plots-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

Col_fullDF_overlap %>%  
  as.data.frame %>% 
  dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass =="LTR"|repClass=="DNA"|repClass =="Retroposon") %>% 
  ggplot(., aes(x=width, fill=repClass))+
    geom_density(color="darkblue",aes(alpha = 0.5))+
  theme_classic()+
  ggtitle("Distribution of all overlapping peak-TE widths",subtitle = "Just LINE, SINE,LTR, DNA, Retroposons; limited x axis")+
  coord_cartesian(xlim= c(0,1550))+
  scale_fill_repeat()

Past versions of "another set of plots-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

Getting the numbers of peaks containing an overlap of > 50% of the TE required creation of a data frame. The first step of the dataframe was to use all high confidence Peaks and join with the TE_Overlapping dataframe.

Peak_TE_overlapbreakdown <-  Col_TSS_data_gr %>% 
  as.data.frame %>%
  distinct(Peakid) %>%
  left_join(.,(Col_fullDF_overlap %>% as.data.frame)) %>%
  dplyr::select(Peakid, repName:repFamily,TE_width,width) %>% 
  left_join(.,(TSS_data_gr %>% as.data.frame), by=c("Peakid"="Peakid")) %>% 
  mutate(mrc=if_else(Peakid %in% NR_df$Peakid, "NR",
                    if_else(Peakid %in% ESR_df$Peakid,"ESR",
                       if_else(Peakid %in% LR_df$Peakid,"LR",
  if_else(Peakid %in% EAR_df$Peakid, "EAR", "not_mrc"))))) %>%   mutate(per_ol= width.x/TE_width)

Peak_TE_overlapbreakdown %>% 
  mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
distinct(Peakid,.keep_all = TRUE) %>% 
  group_by(mrc,TEstatus) %>% tally() 

# A tibble: 10 × 3
# Groups:   mrc [5]
   mrc     TEstatus        n
   <chr>   <chr>       <int>
 1 EAR     TE_peak      4858
 2 EAR     not_TE_peak  2596
 3 ESR     TE_peak     10256
 4 ESR     not_TE_peak  5525
 5 LR      TE_peak     29288
 6 LR      not_TE_peak 13321
 7 NR      TE_peak     57561
 8 NR      not_TE_peak 28767
 9 not_mrc TE_peak      2186
10 not_mrc not_TE_peak  1199

# TE_mrc_status_list %>% 
#   distinct(Peakid, .keep_all = TRUE) %>% 
#   group_by(TEstatus, mrc) %>%  
#   tally #%>% 
#   dplyr::filter(n>=4&mrc=="EAR")
  
  
  # Col_fullDF_cug_overlap %>% as.data.frame() %>% group_by(Peakid) %>% tally %>% dplyr::filter(n>=4)

This increased the number of rows from 172481 to 228784 indicating many peaks contained more than one TE. The column per_ol is representing the proportion of TE covered within the peak. I next decided to only count a peak to contain a TE, if it covered >50% of the length of the TE.

per_cov=0
TE_mrc_status_list <- Peak_TE_overlapbreakdown %>%
   mutate(repClass=if_else(per_ol>per_cov, repClass,                          if_else(per_ol<per_cov,NA,repClass))) %>%
  mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
  dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol) 
 
TE_mrc_status_list%>% 
   distinct(Peakid,TEstatus,.keep_all = TRUE) %>%
   mutate(mrc="all_peaks")%>% 
   rbind((TE_mrc_status_list %>% distinct(Peakid,TEstatus,.keep_all = TRUE))) %>%
   mutate(repClass=factor(repClass)) %>%
   mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>% 
   dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>% 
     ggplot(., aes(x=mrc, fill= TEstatus))+
  geom_bar(position="fill", col="black")+ 
   theme_classic()+
  ggtitle(paste("TE status by MRC and Family using the ",per_cov*100,"% cutoff"))

Past versions of "Making of 4group TE dataframe-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

The table below represents the numbers for each of the four groups when I include the >50% stringency cutoff filter.

per_cov=0
 
TE_mrc_status_list %>% 
   distinct(Peakid,.keep_all = TRUE) %>%
   mutate(mrc="all_peaks")%>% 
   rbind((TE_mrc_status_list %>% distinct(Peakid,.keep_all = TRUE))) %>%
   mutate(repClass=factor(repClass)) %>%
   mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>% 
   dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>%
  group_by(mrc, TEstatus) %>% 
  count() %>% 
  pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>% 
     rowwise() %>% 
     mutate(summary= sum(c_across(TE_peak:not_TE_peak))) %>% 
     ungroup() %>% 
     pivot_longer(., cols= c(TE_peak, not_TE_peak), names_to = c("TEstatus"), values_to = "n") %>% 
     mutate(percent_mrc= n/summary*100) %>% 
      kable(., caption="Table 4: Summary of peak numbers overlapping and not overlapping TEs by each basic MRC using strigency cutoff of 50%.") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)

Table 4: Summary of peak numbers overlapping and not overlapping TEs by each basic MRC using strigency cutoff of 50%.

mrc	summary	TEstatus	n	percent_mrc
EAR	7454	TE_peak	4858	65.17306
EAR	7454	not_TE_peak	2596	34.82694
ESR	15781	TE_peak	10256	64.98954
ESR	15781	not_TE_peak	5525	35.01046
LR	42609	TE_peak	29288	68.73665
LR	42609	not_TE_peak	13321	31.26335
NR	86328	TE_peak	57561	66.67709
NR	86328	not_TE_peak	28767	33.32291
all_peaks	155557	TE_peak	104149	66.95231
all_peaks	155557	not_TE_peak	51408	33.04769

Problem with summary of TE ## Human genome TE breakdown

I first wanted to know the distribution of TEs across the human genome compared to each other. Below are pie plots with all classes from repeatmasker, and then pie plots with ONLY the LINES, SINES, LTRs, DNAs, and Retroposon classes.

repeatmasker  %>% 
   mutate(repClass=factor(repClass)) %>% 
count(repClass) %>% 
   mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repClass = fct_rev(fct_inorder(repClass))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
   ggplot(., aes(x = "", y = n, fill = repClass)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle("Human genome TE breakdown", subtitle=paste(length(repeatmasker$milliIns)))+
  scale_fill_repeat()

Past versions of "repeatmasker genome breakdown-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
6d65dd6	reneeisnowhere	2024-09-09

LiSiLTDNRe <- repeatmasker %>%
  dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon")


repeatmasker  %>% 
   mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>% 
count(repClass) %>% 
   mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repClass = fct_rev(fct_inorder(repClass))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
   ggplot(., aes(x = "", y = n, fill = repClass)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle("Human genome TE breakdown LINE/SINE/LTR/DNA/Retroposon only", subtitle=paste(length(LiSiLTDNRe$milliIns)))+
  scale_fill_repeat()

Past versions of "repeatmasker genome breakdown-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
6d65dd6	reneeisnowhere	2024-09-09

repeatmasker  %>% 
  mutate(repClass_org=repClass) %>% 
   mutate(repClass=factor(repClass)) %>% 
   mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,                            if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>% 
  # dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>% 
count(repClass) %>% 
   mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repClass = fct_rev(fct_inorder(repClass))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
   ggplot(., aes(x = "", y = n, fill = repClass)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle("Human genome TE breakdown LINE/SINE/LTR/DNA/Retroposon focused with other", subtitle=paste(length(repeatmasker$milliIns)))+
  scale_fill_repeat()

Past versions of "repeatmasker genome breakdown-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
6d65dd6	reneeisnowhere	2024-09-09

# saveRDS(TE_mrc_status_list,"data/TE_info/TE_mrc_status_list.RDS")
# TE_ALL_count <- TE_mrc_status_list %>%
#   dplyr::filter(TEstatus =="TE_peak") %>% 
#   dplyr::filter(mrc!="not_mrc") %>%
#   distinct(Peakid) %>% 
#     count
# TE_ALL_count_filt <- TE_mrc_status_list %>%
#   dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>% 
#   dplyr::filter(TEstatus =="TE_peak") %>% 
#   dplyr::filter(mrc!="not_mrc") %>% 
#   distinct(Peakid) %>% 
#     count
TE_50_count <- TE_mrc_status_list %>%
  dplyr::filter(TEstatus =="TE_peak") %>% 
  dplyr::filter(mrc!="not_mrc") %>% 
  distinct(Peakid) %>% 
    count
TE_50_count_filt <- TE_mrc_status_list %>%
   dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>% 
  # dplyr::filter(per_ol>per_cov) %>% 
  dplyr::filter(TEstatus =="TE_peak") %>% 
  dplyr::filter(mrc!="not_mrc") %>% 
  distinct(Peakid) %>% 
    count

TE_mrc_status_list %>% 
   mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
   mutate(repClass=factor(repClass)) %>% 
   dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>% 
  # group_by(repClass) %>% 
  dplyr::filter(TEstatus =="TE_peak") %>% 
   count(repClass) %>% 
  mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repClass = fct_rev(fct_inorder(repClass))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repClass)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
   geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35)+
  # geom_label_repel(aes(label = paste(n,"\n", repClass)),
  #                    position = position_stack(vjust = .3),
  #                    show.legend = FALSE,max.overlaps = 50) +
  theme_void()+
  ggtitle("TE breakdown of Just LINEs, SINEs, LTRs, DNAs, and Retroposons",subtitle = paste(TE_50_count_filt$n))+
  scale_fill_repeat()

Past versions of "TE in all peaks-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
   mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
   mutate(repClass=factor(repClass)) %>% 
  distinct() %>% 
  dplyr::filter(TEstatus =="TE_peak") %>% 
   count(repClass) %>% 
  mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repClass = fct_rev(fct_inorder(repClass))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repClass)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
    # geom_label_repel(aes(label = paste(n,"\n", repClass)),
    #                  position = position_stack(vjust = .3),
    #                  show.legend = FALSE,max.overlaps = 50) +
  theme_void()+
  ggtitle("TE breakdown of all peaks using 50% cutoff",subtitle = paste(TE_50_count$n))+
  scale_fill_repeat()

Past versions of "TE in all peaks-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
   mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
   mutate(repClass_org=repClass) %>% 
   mutate(repClass=factor(repClass)) %>% 
   mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
                            if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>% 
  distinct() %>% 
  dplyr::filter(TEstatus =="TE_peak") %>%
  count(repClass) %>% 
  mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repClass = fct_rev(fct_inorder(repClass))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repClass)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  # geom_label_repel(aes(label = paste(n,"\n", repClass)),
  #                    position = position_stack(vjust = .3),
  #                    show.legend = FALSE,max.overlaps = 50) +
  theme_void()+
  ggtitle("TE breakdown of all peaks using 50% cutoff",subtitle = paste(TE_50_count_filt$n, "peaks that contain LINEs, SINEs, LTRs, DNAs, or Retroposons"))+
  scale_fill_repeat()

Past versions of "TE in all peaks-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

### note the change in data frame Renee, this is where you flipped back to the original without filters.
Peak_TE_overlapbreakdown%>% 
  mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
  dplyr::filter(TEstatus=="TE_peak") %>% 
  distinct() %>% 
  mutate(repClass=factor(repClass)) %>% 
  ggplot(., aes(x=width.x))+
  geom_density(aes(fill=repClass, alpha = 0.5))+
  theme_classic()+
  ggtitle("Distribution of all overlapping peak-TE widths")+
  scale_fill_repeat()

Past versions of "TEs in all peaks-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Peak_TE_overlapbreakdown%>% 
  mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
  dplyr::filter(TEstatus=="TE_peak") %>% 
  distinct() %>% 
  mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>% 
  ggplot(., aes(x=width.x))+
  geom_density(aes(fill=repClass, alpha = 0.5))+
  theme_classic()+
  ggtitle("Distribution of all overlapping peak-TE widths >50%")+
  scale_fill_repeat()

Past versions of "TEs in all peaks-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Peak_TE_overlapbreakdown%>%
  mutate(repClass=if_else(per_ol>per_cov, repClass,                          if_else(per_ol<per_cov,NA,repClass))) %>%
  mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
  dplyr::filter(TEstatus=="TE_peak") %>% 
  distinct() %>% 
  mutate(repClass=factor(repClass)) %>%
  ggplot(., aes(x=width.x))+
  geom_density(aes(fill=repClass, alpha = 0.5))+
  theme_classic()+
  ggtitle("Distribution of all overlapping peak-TE widths >50% of TE length")+
  scale_fill_repeat()

Past versions of "TEs in all peaks-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Peak_TE_overlapbreakdown %>% 
  mutate(repClass=if_else(per_ol>per_cov, repClass,                          if_else(per_ol<per_cov,NA,repClass))) %>%
  mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
   mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
  distinct() %>% 
  dplyr::filter(TEstatus=="TE_peak") %>% 
  mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>% 
  ggplot(., aes(x=width.x))+
  geom_density(aes(fill=repClass, alpha = 0.5))+
  scale_fill_repeat()+
  theme_classic()+
  ggtitle("Filtered Distribution of all overlapping peak-TE widths >50 TE length%")

Past versions of "TEs in all peaks-4.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Line repeats

Line_df %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle("Human genome LINE breakdown", subtitle=paste(length(Line_df$milliIns)))+
  scale_fill_lines()

Past versions of "LINEclass breakdown-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_LINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(TEstatus =="TE_peak"&repClass=="LINE") %>% 
  count

TE_mrc_status_list %>% 
  dplyr::filter(repClass == "LINE") %>%
  mutate(repFamily=factor(repFamily)) %>% 
  count(repFamily) %>%
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("LINE breakdown of peaks ",per_cov),subtitle=paste(TE_LINE_count$n))+
  scale_fill_lines()

Past versions of "LINEclass breakdown-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

EAR_LINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="LINE") %>% 
  count
ESR_LINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="LINE") %>% 
  count
LR_LINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="LINE") %>% 
  count
NR_LINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="LINE") %>% 
  count

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="LINE") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("EAR LINE breakdown of peaks ",per_cov),subtitle=paste(EAR_LINE_count$n))+
  scale_fill_lines()

Past versions of "LINEclass breakdown-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="LINE") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("ESR LINE breakdown of peaks ",per_cov),subtitle=paste(ESR_LINE_count$n))+
  scale_fill_lines()

Past versions of "LINEclass breakdown-4.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="LINE") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("LR LINE breakdown of peaks ",per_cov),subtitle=paste(LR_LINE_count$n))+
  scale_fill_lines()

Past versions of "LINEclass breakdown-5.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="LINE") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("NR LINE breakdown of peaks ",per_cov),subtitle=paste(NR_LINE_count$n))+
  scale_fill_lines()

Past versions of "LINEclass breakdown-6.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

all_L2_count <- TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LINE"&repFamily=="L2") %>% 
  tally
EAR_L2_count <- TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LINE"&repFamily=="L2", mrc=="EAR") %>% 
  tally
ESR_L2_count <- TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LINE"&repFamily=="L2", mrc=="ESR") %>% 
  tally
LR_L2_count <- TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LINE"&repFamily=="L2", mrc=="LR") %>% 
  tally
NR_L2_count <- TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LINE"&repFamily=="L2", mrc=="NR") %>% 
  tally


TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LINE"&repFamily=="L2")%>% 
  mutate(repName=factor(repName)) %>% 
  # group_by(repName) %>% 
  count(repName) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  # geom_label_repel(aes(label = n),
  #                    position = position_stack(vjust = .3),
  #                    show.legend = FALSE,max.overlaps = 50) +
  theme_void()+
  ggtitle(paste0("LINE-L2 breakdown for all peaks ",per_cov),subtitle=paste(all_L2_count," total LINEs"))+
  scale_fill_L2()

Past versions of L2breakdown-1.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="LINE"&repFamily=="L2")%>% 
  mutate(repName=factor(repName)) %>% 
  # group_by(repName) %>% 
  count(repName) %>%
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  # geom_label_repel(aes(label = n),
  #                    position = position_stack(vjust = .3),
  #                    show.legend = FALSE,max.overlaps = 50) +
  geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("LINE-L2 breakdown for EAR ",per_cov),subtitle=paste(EAR_L2_count$n," total L2s"))+
  scale_fill_L2()

Past versions of L2breakdown-2.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="LINE"&repFamily=="L2")%>% 
  mutate(repName=factor(repName)) %>% 
  # group_by(repName) %>% 
  count(repName) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("LINE-L2 breakdown for ESR ",per_cov),subtitle=paste(ESR_L2_count$n," total L2s"))+
  scale_fill_L2()

Past versions of L2breakdown-3.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="LINE"&repFamily=="L2")%>% 
  mutate(repName=factor(repName)) %>% 
  count(repName) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("LINE-L2 breakdown for LR ",per_cov),subtitle=paste(LR_L2_count$n," total L2s"))+
  scale_fill_L2()

Past versions of L2breakdown-4.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="LINE"&repFamily=="L2")%>% 
  mutate(repName=factor(repName)) %>% 
  count(repName) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("LINE-L2 breakdown for NR ",per_cov),subtitle=paste(NR_L2_count$n," total L2s"))+
  scale_fill_L2()

Past versions of L2breakdown-5.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

Sine repeats

Sine_df%>% 
count(repFamily) %>% 
   mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
   ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle("Human genome SINE breakdown", subtitle=paste(length(Sine_df$milliIns)))+
  scale_fill_sines()

Past versions of "Sineclass breakdown-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_SINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(TEstatus =="TE_peak"&repClass=="SINE") %>% 
  count

TE_mrc_status_list %>% 
  dplyr::filter(repClass == "SINE") %>% 
   mutate(repFamily=factor(repFamily)) %>% 
     # group_by(repFamily) %>% 
  count(repFamily) %>% 
   mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
   # geom_label_repel(aes(label = n),
   #                   position = position_stack(vjust = .3),
   #                   show.legend = FALSE,max.overlaps = 50) +
  theme_void()+
  ggtitle(paste0("SINE breakdown of peaks ",per_cov),subtitle=paste(TE_SINE_count$n," total SINEs found"))+
  scale_fill_sines()

Past versions of "Sineclass breakdown-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

EAR_SINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="SINE") %>% 
  count
ESR_SINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="SINE") %>% 
  count
LR_SINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="SINE") %>% 
  count
NR_SINE_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="SINE") %>% 
  count

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="SINE") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  # geom_label_repel(aes(label = n),
  #                    position = position_stack(vjust = .3),
  #                    show.legend = FALSE,max.overlaps = 50) +
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("EAR SINE breakdown of peaks ",per_cov),subtitle=paste(EAR_SINE_count$n))+
  scale_fill_sines()

Past versions of "Sineclass breakdown-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="SINE") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  # geom_label_repel(aes(label = n),
  #                    position = position_stack(vjust = .3),
  # 
  theme_void()+
  ggtitle(paste0("ESR SINE breakdown of peaks ",per_cov),subtitle=paste(ESR_SINE_count$n))+
  scale_fill_sines()

Past versions of "Sineclass breakdown-4.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="SINE") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  # geom_label_repel(aes(label = n),
  #                    position = position_stack(vjust = .3),
  #                    show.legend = FALSE,max.overlaps = 50) +
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("LR SINE breakdown of peaks ",per_cov),subtitle=paste(LR_SINE_count$n))+
  scale_fill_sines()

Past versions of "Sineclass breakdown-5.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="SINE") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  # geom_label_repel(aes(label = n),
  #                    position = position_stack(vjust = .3),
  #                    show.legend = FALSE,max.overlaps = 50) +
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste0("NR SINE breakdown of peaks ",per_cov),subtitle=paste(NR_SINE_count$n))+
  scale_fill_sines()

Past versions of "Sineclass breakdown-6.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

LTR repeats

per_cov <- 0.0


LTR_df%>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
   ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle("Human genome LTR breakdown", subtitle=paste(length(LTR_df$milliIns)))+
  scale_fill_LTRs()

Past versions of "LTR breakdown-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

LTR_count <- TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LTR") %>% 
  count
EAR_LTR_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="LTR") %>% 
  count
ESR_LTR_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="LTR") %>% 
  count
LR_LTR_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="LTR") %>% 
  count
NR_LTR_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="LTR") %>% 
  count

TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LTR") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("All peaks LTR breakdown of peaks",per_cov),subtitle=paste(LTR_count$n))+
  scale_fill_LTRs()

Past versions of "LTR breakdown-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="LTR") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("EAR LTR breakdown of peaks",per_cov),subtitle=paste(EAR_LTR_count$n))+
  scale_fill_LTRs()

Past versions of "LTR breakdown-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="LTR") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("ESR LTR breakdown of peaks",per_cov),subtitle=paste(ESR_LTR_count$n))+
  scale_fill_LTRs()

Past versions of "LTR breakdown-4.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="LTR") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("LR LTR breakdown of peaks ",per_cov),subtitle=paste(LR_LTR_count$n))+
  scale_fill_LTRs()

Past versions of "LTR breakdown-5.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="LTR") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("NR LTR breakdown of peaks", per_cov),subtitle=paste(NR_LTR_count$n))+
  scale_fill_LTRs()

Past versions of "LTR breakdown-6.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

DNA TEs

per_cov <- 0.0

DNA_df%>% 
count(repFamily) %>% 
   mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
   ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 50) +
  theme_void()+
  ggtitle("Human genome DNA breakdown", subtitle=paste(length(DNA_df$milliIns)))+
  scale_fill_DNAs()

Past versions of "DNA breakdown-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_DNA_count <- TE_mrc_status_list %>% 
  dplyr::filter(TEstatus =="TE_peak"&repClass=="DNA") %>% 
  count

TE_mrc_status_list %>% 
  dplyr::filter(repClass == "DNA") %>% 
   mutate(repFamily=factor(repFamily)) %>% 
     # group_by(repFamily) %>% 
  count(repFamily) %>% 
   mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
   # geom_label(aes(label = repClass),
   #          position = position_stack(vjust = .8)) +
  # geom_label(aes(label=repClass, y=text_y))
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("DNA breakdown of peaks", per_cov),subtitle=paste(TE_DNA_count$n))+
  scale_fill_DNAs()

Past versions of "DNA breakdown-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

EAR_DNA_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="DNA") %>% 
  count
ESR_DNA_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="DNA") %>% 
  count
LR_DNA_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="DNA") %>% 
  count
NR_DNA_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="DNA") %>% 
  count


TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="DNA") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  # geom_label_repel(aes(label = n),
  #                    position = position_stack(vjust = .3),
  #                    show.legend = FALSE,max.overlaps = 50) +
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("EAR DNA breakdown of peaks",per_cov),subtitle=paste(EAR_DNA_count$n))+
  scale_fill_DNAs()

Past versions of "DNA breakdown-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="DNA") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("ESR DNA breakdown of peaks",per_cov),subtitle=paste(ESR_DNA_count$n))+
  scale_fill_DNAs()

Past versions of "DNA breakdown-4.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="DNA") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("LR DNA breakdown of peaks",per_cov),subtitle=paste(LR_DNA_count$n))+
  scale_fill_DNAs()

Past versions of "DNA breakdown-5.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="DNA") %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  # group_by(repFamily) %>% 
  count(repFamily) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repFamily)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("NR DNA breakdown of peaks", per_cov),subtitle=paste(NR_DNA_count$n))+
  scale_fill_DNAs()

Past versions of "DNA breakdown-6.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

retroposon

per_cov <- 0.0

retroposon_df%>% 
  count(repName) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
  mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label =  paste0(repName ,"\n", sprintf("%.2f", perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle("Human genome retroposon breakdown", subtitle= paste( length(retroposon_df$milliIns)))+
  scale_fill_retroposons()

Past versions of "retroposon breakdown-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_retroposon_count <- TE_mrc_status_list %>% 
  dplyr::filter(TEstatus =="TE_peak"&repClass=="Retroposon") %>% 
  count

TE_mrc_status_list %>% 
  dplyr::filter(repClass == "Retroposon") %>% 
   mutate(repName=factor(repName)) %>% 
     # group_by(repName) %>% 
  count(repName) %>% 
   mutate(perc= n/sum(n)) %>% 
   arrange(desc(n)) %>% 
  mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
   # geom_label(aes(label = repClass),
   #          position = position_stack(vjust = .8)) +
  geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("retroposon breakdown of peaks",per_cov),subtitle=paste(TE_retroposon_count$n))+
  scale_fill_retroposons()

Past versions of "retroposon breakdown-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

EAR_Retroposon_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="EAR"&repClass=="Retroposon") %>% 
  count
ESR_Retroposon_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="Retroposon") %>% 
  count
LR_Retroposon_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="Retroposon") %>% 
  count
NR_Retroposon_count <- TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="Retroposon") %>% 
  count


TE_mrc_status_list %>% 
  dplyr::filter(mrc =="ESR"&repClass=="Retroposon") %>% 
  mutate(repName=factor(repName)) %>% 
  # group_by(repName) %>% 
  count(repName) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
   mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("ESR Retroposon breakdown of peaks",per_cov),subtitle=paste(ESR_Retroposon_count$n))+
  scale_fill_retroposons()

Past versions of "retroposon breakdown-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="LR"&repClass=="Retroposon") %>% 
  mutate(repName=factor(repName)) %>% 
  # group_by(repName) %>% 
  count(repName) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
   mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("LR Retroposon breakdown of peaks",per_cov),subtitle=paste(LR_Retroposon_count$n))+
  scale_fill_retroposons()

Past versions of "retroposon breakdown-4.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(mrc =="NR"&repClass=="Retroposon") %>% 
  mutate(repName=factor(repName)) %>% 
  # group_by(repName) %>% 
  count(repName) %>% 
  mutate(perc= n/sum(n)) %>% 
  arrange(desc(n)) %>% 
   mutate(repName = fct_rev(fct_inorder(repName))) %>% 
  mutate(text_y = cumsum(n) - n/2) %>% 
  ggplot(., aes(x = "", y = n, fill = repName)) +
  geom_col(color = "black") +
  coord_polar(theta = "y", start = 0)+
  geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
                     position = position_stack(vjust = .5),
                     force=.9,show.legend = FALSE,max.overlaps = 35) +
  theme_void()+
  ggtitle(paste("NR Retroposon breakdown of peaks",per_cov),subtitle=paste(NR_Retroposon_count$n))+
  scale_fill_retroposons()

Past versions of "retroposon breakdown-5.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE by response cluster bargraph summaries

TE_mrc_status_list %>% 
   mutate(repClass_org = repClass) %>% #copy repClass for storage
  mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
                          if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>% 
  dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol) %>%
  distinct(Peakid, .keep_all = TRUE) %>% 
  mutate(mrc="all_peaks") %>% 
  rbind((TE_mrc_status_list %>% distinct(Peakid,.keep_all = TRUE))) %>%
  mutate(repClass=factor(repClass)) %>%
  mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>% 
  dplyr::filter(mrc != "not_mrc") %>% 
  # dplyr::filter(is.na(per_ol)| per_ol>per_cov) %>%
  mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>% 
  ggplot(., aes(x=mrc, fill= TEstatus))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle(paste("TE status by MRC and Family",">", per_cov*100,"%"))

Past versions of "TE status old clusters-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

# TE_counts_nofilt <- TE_mrc_status_list %>% 
#    mutate(repClass_org = repClass) %>% #copy repClass for storage
#   mutate(repClass=if_else(##relable repClass with other
#     repClass_org=="LINE", repClass_org,if_else(repClass_org=="SINE",repClass_org,if_else(repClass_org=="LTR", repClass_org, if_else(repClass_org=="DNA", repClass_org, if_else(repClass_org=="Retroposon",repClass_org,if_else(is.na(repClass_org),repClass_org,"Other"))))))) %>% 
#    dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol) %>% distinct(Peakid, .keep_all = TRUE) %>% 
#    mutate(mrc="all_peaks") %>% 
#   rbind((TE_mrc_status_list %>% distinct(Peakid,.keep_all = TRUE))) %>% 
#   # mutate(repClass=factor(repClass)) %>%
#    mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>% 
#    dplyr::filter(mrc != "not_mrc") %>% 
#   mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>% 
#      group_by(mrc, TEstatus) %>% 
#      count() %>% 
#      pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>% 
#      rowwise() %>% 
#      mutate(summary= sum(c_across(TE_peak:not_TE_peak))) %>% 
#      ungroup() %>% 
#      pivot_longer(., cols= c(TE_peak, not_TE_peak), names_to = c("TEstatus"), values_to = "n") %>% 
#      mutate(percent_mrc= n/summary*100)

# notinterested_list <- c("Simple_repeat","Satellite","Low_complexity","DNA?","snRNA","tRNA","Unknown","RC","LTR?","srpRNA","scRNA","rRNA","RC?","SINE?")

Lines_Etc <-   TE_mrc_status_list %>%
  mutate(repClass_org = repClass) %>%  
  # dplyr::filter(!repClass %in% notinterested_list) %>% 
  mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
              if_else(repClass_org=="Retroposon",repClass_org,
                if_else(is.na(repClass_org),repClass_org,"Other"))))))) %>% 
   dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol)%>% 
    distinct(Peakid,mrc, .keep_all = TRUE) %>% 
   mutate(mrc="all_peaks")

LiSiLTDNRe_TE <-TE_mrc_status_list %>% 
   mutate(repClass_org = repClass) %>% 
   mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
        if_else(repClass_org=="Retroposon",repClass_org,
                if_else(is.na(repClass_org),repClass_org,"Other"))))))) %>% 
   dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol) %>%
  distinct(Peakid, .keep_all = TRUE) %>% 
  rbind(Lines_Etc) %>% 
  mutate(repClass=factor(repClass)) %>%
  mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>% 
  group_by(mrc, TEstatus) %>% 
  count() %>% 
  pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>% 
  rowwise() %>% 
  mutate(summary= sum(c_across(TE_peak:not_TE_peak))) %>% 
  ungroup() %>% 
  pivot_longer(., cols= c(TE_peak, not_TE_peak), names_to = c("TEstatus"), values_to = "n") %>% 
  mutate(percent_mrc= n/summary*100)

LiSiLTDNRe_TE %>% 
  kable(., caption="Table 5: Summary of peak numbers overlapping and not overlapping TEs by each basic MRC in TE_peak count") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) %>% 
  scroll_box(height = "500px")

Table 5: Summary of peak numbers overlapping and not overlapping TEs by each basic MRC in TE_peak count

mrc	summary	TEstatus	n	percent_mrc
EAR	7454	TE_peak	4858	65.17306
EAR	7454	not_TE_peak	2596	34.82694
ESR	15781	TE_peak	10256	64.98954
ESR	15781	not_TE_peak	5525	35.01046
LR	42609	TE_peak	29288	68.73665
LR	42609	not_TE_peak	13321	31.26335
NR	86328	TE_peak	57561	66.67709
NR	86328	not_TE_peak	28767	33.32291
all_peaks	155557	TE_peak	104149	66.95231
all_peaks	155557	not_TE_peak	51408	33.04769

# TE_mrc_status_list %>% 
#    mutate(repClass_org = repClass) %>% 
#     mutate(repClass=if_else(##relable repClass with other
#     repClass_org=="LINE", repClass_org,
#     if_else(repClass_org=="SINE",repClass_org,
#             if_else(repClass_org=="LTR", repClass_org, 
#                     if_else(repClass_org=="DNA", repClass_org,                            if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>% 
#    dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol) %>%
#   distinct(Peakid, .keep_all = TRUE) %>% 
#   rbind(Lines_Etc) %>% 
#   dplyr::filter(is.na(per_ol)| per_ol > per_cov) %>% 
#    mutate(repClass=factor(repClass)) %>% 
#    mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>% 
#    dplyr::filter(mrc != "not_mrc") %>% 
#   mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>% 
#   ggplot(., aes(x=mrc, fill= TEstatus))+
#   geom_bar(position="fill", col="black")+
#   theme_classic()+
#   ggtitle(paste("TE status by MRC and Family", per_cov), subtitle = "Just LINEs, SINEs,LTRs, DNAs, Retroposons, and all peaks in the MRC families")

Chi square tests

# ##complete counts()
# print("Chi square tests without filtering")
# chitest_LRvNRTE_nf <- matrix(c(TE_counts_nofilt$n[5],TE_counts_nofilt$n[6],TE_counts_nofilt$n[7],TE_counts_nofilt$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_LRvNRTE_nf)
# 
# chitest_EARvNRTE_nf <- matrix(c(TE_counts_nofilt$n[1],TE_counts_nofilt$n[2],TE_counts_nofilt$n[7],TE_counts_nofilt$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_EARvNRTE_nf)
# 
# chitest_ESRvNRTE_nf <- matrix(c(TE_counts_nofilt$n[3],TE_counts_nofilt$n[4],TE_counts_nofilt$n[7],TE_counts_nofilt$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_ESRvNRTE_nf)

### just subsets

# print("chi test on subsets without >50% overlap cut off")
# chitest_LRvNRTE_nc <- matrix(c(LiSiLTDNRe_TE_no_cut$n[5],LiSiLTDNRe_TE_no_cut$n[6],LiSiLTDNRe_TE_no_cut$n[7],LiSiLTDNRe_TE_no_cut$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_LRvNRTE_nc)
# 
# chitest_EARvNRTE_nc <- matrix(c(LiSiLTDNRe_TE_no_cut$n[1],LiSiLTDNRe_TE_no_cut$n[2],LiSiLTDNRe_TE_no_cut$n[7],LiSiLTDNRe_TE_no_cut$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_EARvNRTE_nc)
# 
# chitest_ESRvNRTE_nc <- matrix(c(LiSiLTDNRe_TE_no_cut$n[3],LiSiLTDNRe_TE_no_cut$n[4],LiSiLTDNRe_TE_no_cut$n[7],LiSiLTDNRe_TE_no_cut$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_ESRvNRTE_nc)



##### JUst using the .5 overlap cutoff
print(" chi tests using >50% cutoff")

[1] " chi tests using >50% cutoff"

chitest_LRvNRTE <- matrix(c(LiSiLTDNRe_TE$n[5],LiSiLTDNRe_TE$n[6],LiSiLTDNRe_TE$n[7],LiSiLTDNRe_TE$n[8]), ncol=2, byrow=TRUE)
chisq.test(chitest_LRvNRTE)

    Pearson's Chi-squared test with Yates' continuity correction

data:  chitest_LRvNRTE
X-squared = 54.944, df = 1, p-value = 1.24e-13

chitest_EARvNRTE <- matrix(c(LiSiLTDNRe_TE$n[1],LiSiLTDNRe_TE$n[2],LiSiLTDNRe_TE$n[7],LiSiLTDNRe_TE$n[8]), ncol=2, byrow=TRUE)
chisq.test(chitest_EARvNRTE)

    Pearson's Chi-squared test with Yates' continuity correction

data:  chitest_EARvNRTE
X-squared = 6.9059, df = 1, p-value = 0.008591

chitest_ESRvNRTE <- matrix(c(LiSiLTDNRe_TE$n[3],LiSiLTDNRe_TE$n[4],LiSiLTDNRe_TE$n[7],LiSiLTDNRe_TE$n[8]), ncol=2, byrow=TRUE)
chisq.test(chitest_ESRvNRTE)

    Pearson's Chi-squared test with Yates' continuity correction

data:  chitest_ESRvNRTE
X-squared = 16.959, df = 1, p-value = 3.82e-05

Breakdown of Classes by 4 member clusters

per_cov <- 0.0
 
# ggline_df <-   Line_repeats %>%
#   as.data.frame() %>% 
#  tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
#   dplyr::select(Peakid,repName,repClass, repFamily) %>% 
#   mutate(TEstatus ="TE_peak", mrc="h.genome", per_ol = "NA") %>% 
  ggline_df <-   TE_mrc_status_list %>%  
             mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
             dplyr::filter(repClass=="LINE") %>%
  distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>% 
  mutate(mrc="all_peaks")

ggsine_df <-TE_mrc_status_list %>%  
             mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
             dplyr::filter(repClass=="SINE") %>%
  distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>% 
  mutate(mrc="all_peaks")

 #  Sine_repeats %>% 
 #  as.data.frame() %>% 
 # tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
 #  dplyr::select(Peakid,repName,repClass, repFamily) %>% 
 #  mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>% 
 #    rbind((TE_mrc_status_list %>%  
 #             mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
 #             dplyr::filter(repClass=="SINE"))) %>%
 #  mutate(mrc="all_peaks")

ggLTR_df <- TE_mrc_status_list %>%  
             mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
             dplyr::filter(repClass=="LTR") %>%
  distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>% 
  mutate(mrc="all_peaks")

 #  LTR_repeats %>% 
 #  as.data.frame() %>% 
 # tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
 #  dplyr::select(Peakid,repName,repClass, repFamily) %>% 
 #  mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA")%>% 
 #    rbind((TE_mrc_status_list %>%  
 #             mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
 #             dplyr::filter(repClass=="LTR"))) %>%
 #  mutate(mrc="all_peaks")


ggDNA_df <-TE_mrc_status_list %>%  
             mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
             dplyr::filter(repClass=="DNA") %>%
  distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>% 
  mutate(mrc="all_peaks")

 #  DNA_repeats %>% 
 #  as.data.frame() %>% 
 # tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
 #  dplyr::select(Peakid,repName,repClass, repFamily) %>% 
 #  mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA")%>% 
 #     rbind((TE_mrc_status_list %>%  
 #             mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
 #             dplyr::filter(repClass=="DNA"))) %>%
 #  mutate(mrc="all_peaks")

ggretroposon_df <-TE_mrc_status_list %>%  
             mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
             dplyr::filter(repClass=="Retroposons") %>%
  distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>% 
  mutate(mrc="all_peaks")

  # retroposon_repeats %>% 
 #  as.data.frame() %>% 
 # tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
 #  dplyr::select(Peakid,repName,repClass, repFamily) %>% 
 #  mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA")%>% 
 #     rbind((TE_mrc_status_list %>%  
 #             mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
 #             dplyr::filter(repClass=="Retroposon"))) %>%
 #  mutate(mrc="all_peaks")


plot1 <- TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LINE") %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
  rbind(., ggline_df) %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>% 
  ggplot(., aes(x=mrc, fill= repFamily))+
  geom_bar(position="fill", col="black")+
  theme_bw()+
  ggtitle(paste("LINE breakdown by MRC and Family", per_cov))+
  scale_fill_lines()
plot1

Past versions of "breakdown by cluster-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6dfe33e	reneeisnowhere	2024-09-23
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

plot2 <- TE_mrc_status_list %>% 
  dplyr::filter(repClass=="SINE") %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
   rbind(., ggsine_df) %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>% 
  ggplot(., aes(x=mrc, fill= repFamily))+
  geom_bar(position="fill", col="black")+
  theme_bw()+
  ggtitle(paste("SINE breakdown by MRC and Family",per_cov))+
  scale_fill_sines()
plot2

Past versions of "breakdown by cluster-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6dfe33e	reneeisnowhere	2024-09-23
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(repClass=="LTR") %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
   rbind(., ggLTR_df) %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>% 
  ggplot(., aes(x=mrc, fill= repFamily))+
  geom_bar(position="fill", col="black")+
  theme_bw()+
  ggtitle(paste("LTR breakdown by MRC and Family",per_cov))+
  scale_fill_LTRs()

Past versions of "breakdown by cluster-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6dfe33e	reneeisnowhere	2024-09-23
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(repClass=="DNA") %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
   rbind(., ggDNA_df) %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>% 
  ggplot(., aes(x=mrc, fill= repFamily))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle(paste("DNA breakdown by MRC and Family",per_cov))+
  scale_fill_DNAs()

Past versions of "breakdown by cluster-4.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6dfe33e	reneeisnowhere	2024-09-23
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

TE_mrc_status_list %>% 
  dplyr::filter(repClass=="Retroposon") %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
   rbind(., ggretroposon_df) %>% 
  mutate(repName=factor(repName)) %>% 
  mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>% 
  ggplot(., aes(x=mrc, fill= repName))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle(paste("Retroposon breakdown by MRC and Family",per_cov))+
  scale_fill_retroposons()

Past versions of "breakdown by cluster-5.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6dfe33e	reneeisnowhere	2024-09-23
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

Adding in the new categories

Here I break up the categories using median LFC

• EAR_open = median 3 hour LFC > 0
  
• EAR_close = median 3 hour LFC < 0
• ESR_A = median 3 hour > 0 and median 24 hour >0
• ESR_B = median 3 hour < 0 and median 24 hour <0
• ESR_opcl [C] = median 3 hour > 0 and median 24 hour <0
• ESR_clop [D] = median 3 hour < 0 and median 24 hour >0
• LR_open = median 24 hour LFC > 0
  
• LR_close = median 24 hour LFC < 0
  
• NR = all NR classified peaks

per_cov=0
median_24_lfc <- read_csv("data/Final_four_data/median_24_lfc.csv") 
median_3_lfc <- read_csv("data/Final_four_data/median_3_lfc.csv")

open_3med <- median_3_lfc %>% 
  dplyr::filter(med_3h_lfc > 0)

close_3med <- median_3_lfc %>% 
  dplyr::filter(med_3h_lfc < 0)

open_24med <- median_24_lfc %>% 
  dplyr::filter(med_24h_lfc > 0)

close_24med <- median_24_lfc %>% 
  dplyr::filter(med_24h_lfc < 0)

medA <- median_3_lfc %>% 
  left_join(median_24_lfc, by=c("peak"="peak")) %>% 
  dplyr::filter(med_3h_lfc > 0 & med_24h_lfc>0)

medB <- median_3_lfc %>% 
  left_join(median_24_lfc, by=c("peak"="peak")) %>% 
  dplyr::filter(med_3h_lfc < 0 & med_24h_lfc < 0)
 
medC <- median_3_lfc %>% 
  left_join(median_24_lfc, by=c("peak"="peak")) %>% 
  dplyr::filter(med_3h_lfc > 0& med_24h_lfc <0)
  

medD <- median_3_lfc %>% 
 left_join(median_24_lfc, by=c("peak"="peak"))%>% 
  dplyr::filter(med_3h_lfc < 0 & med_24h_lfc > 0)
 

EAR_open <- EAR_df %>%
  dplyr::filter(Peakid %in% open_3med$peak)
  
EAR_open_gr <- EAR_open %>% GRanges()

EAR_close <- EAR_df %>%
  dplyr::filter(Peakid %in% close_3med$peak) 

EAR_close_gr <- EAR_close %>% GRanges()

LR_open <- LR_df %>%
  dplyr::filter(Peakid %in% open_24med$peak) 

LR_open_gr <- LR_open %>% GRanges()

LR_close <- LR_df %>%
  dplyr::filter(Peakid %in% close_24med$peak) 

LR_close_gr <- LR_close %>% GRanges()

NR_gr <- NR_df %>% 
   GRanges()

ESR_open <- ESR_df %>% 
  dplyr::filter(Peakid %in% medA$peak)  
 
ESR_open_gr <- ESR_open %>% GRanges()

ESR_close <- ESR_df %>% 
  dplyr::filter(Peakid %in% medB$peak)  

ESR_close_gr <- ESR_close %>% GRanges()

ESR_C <- ESR_df %>% 
  dplyr::filter(Peakid %in% medC$peak) 
ESR_opcl <- ESR_C
ESR_D <- ESR_df %>% 
  dplyr::filter(Peakid %in% medD$peak) 
ESR_clop <- ESR_D

ESR_OC <- ESR_C %>% 
  rbind(ESR_D)
ESR_OC_gr <- ESR_OC %>% GRanges()

Eight_group_TE <-  Col_TSS_data_gr %>% 
  as.data.frame %>% 
  dplyr::select(Peakid) %>% 
  left_join(.,(Col_fullDF_overlap %>% 
                 as.data.frame)) %>% 
   # mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>% 
   mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
                      if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
                              if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
                                      if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
                                              if_else(Peakid %in% ESR_OC$Peakid,"ESR_OC",
                                                              if_else(Peakid %in% LR_open$Peakid, "LR_open",
                                                                      if_else(Peakid %in% LR_close$Peakid, "LR_close",
                                     if_else(Peakid %in% NR_df$Peakid, "NR", "not_mrc"))))))))) %>%  
                                       mutate(per_ol= width/TE_width) %>% 
  mutate(repClass_org=repClass) %>% 
  mutate(repClass=if_else(per_ol>per_cov, repClass,                          if_else(per_ol<per_cov,NA,repClass))) %>%
  mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
  mutate(repClass=factor(repClass)) %>%
  mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
                            if_else(repClass_org=="Retroposon",repClass_org,
                                    if_else(is.na(repClass_org), repClass_org, "Other"))))))) %>% 
  dplyr::select(Peakid, repName,repClass,repClass_org, repFamily, width, TEstatus, mrc, per_ol)


Eight_group_TE %>% distinct(Peakid,.keep_all = TRUE) %>% 
  group_by(mrc, TEstatus) %>% 
  tally

# A tibble: 18 × 3
# Groups:   mrc [9]
   mrc       TEstatus        n
   <chr>     <chr>       <int>
 1 EAR_close TE_peak      2804
 2 EAR_close not_TE_peak  1492
 3 EAR_open  TE_peak      2054
 4 EAR_open  not_TE_peak  1104
 5 ESR_OC    TE_peak       803
 6 ESR_OC    not_TE_peak   357
 7 ESR_close TE_peak      5934
 8 ESR_close not_TE_peak  3415
 9 ESR_open  TE_peak      3519
10 ESR_open  not_TE_peak  1753
11 LR_close  TE_peak      9216
12 LR_close  not_TE_peak  4856
13 LR_open   TE_peak     20072
14 LR_open   not_TE_peak  8465
15 NR        TE_peak     57561
16 NR        not_TE_peak 28767
17 not_mrc   TE_peak      2186
18 not_mrc   not_TE_peak  1199

# MRC_list(list=Eight_group_TE=Eight_group_TE)

EAR

ESR

Past versions of ESR-te-1.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Past versions of ESR-te-2.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Past versions of ESR-te-3.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

LR

Past versions of LRTE-1.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Past versions of LRTE-2.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

NR

Past versions of NR-te-1.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

sub-set breakdown with new classes

This section reclassifies any TE that is NOT a LINE, SINE, LTR, DNA, or retroposon as “other”. Still using > 50% coverage cutoff

per_cov <- 0.0
subsetall_df <-  Eight_group_TE %>% 
  dplyr::filter(mrc != "not_mrc") %>%
  mutate(mrc="all_peaks") 

# h.genome_df <- LiSiLTDNRe %>% 
h.genome_df <- repeatmasker %>% 
  mutate(repClass_org = repClass) %>% #copy repClass for storage
  mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,if_else(repClass_org=="SINE",repClass_org,if_else(repClass_org=="LTR", repClass_org, if_else(repClass_org=="DNA", repClass_org, if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>% 
  mutate(Peakid=paste0(rownames(.),"_TE")) %>% 
  dplyr::select(Peakid,repName,repClass, repFamily,repClass_org) %>%
   mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA", width="NA")


Eight_group_TE %>%
  dplyr::filter(mrc != "not_mrc") %>%
 
  # dplyr::filter(per_ol>per_cov) %>% 
  rbind(subsetall_df) %>%
  mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks"))) %>%
  dplyr::filter(TEstatus=="TE_peak") %>% 
  ggplot(., aes(x=mrc, fill= repClass))+
  geom_bar(position="fill", col="black")+
  theme_bw()+
  ggtitle(paste("Repeat breakdown across eight clusters", per_cov))+
  scale_fill_repeat()

Past versions of "breakdown by specific cluster-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

Now I will display without the “other” and regraph with new groups

Eight_group_TE %>%
  dplyr::filter(mrc != "not_mrc") %>%
  dplyr::filter(per_ol>per_cov) %>% 
  rbind(subsetall_df) %>%
  mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks"))) %>%
  dplyr::filter(TEstatus=="TE_peak") %>% 
  dplyr::filter(is.na(repClass)|repClass != "Other") %>% 
  ggplot(., aes(x=mrc, fill= repClass))+
  geom_bar(position="fill", col="black")+
  theme_bw()+
   ggtitle(paste("Repeat breakdown across eight clusters without 'Other'", per_cov))+
  scale_fill_repeat()

Past versions of "eight group breakdown-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

Eight_group_TE %>% 
   mutate(repClass_org = repClass) %>% 
  # mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>% 
   dplyr::select(Peakid,repName,repClass,repFamily,repClass_org,width,TEstatus, mrc, per_ol)%>%
  distinct(Peakid, .keep_all = TRUE)%>% 
  rbind((subsetall_df %>% distinct(Peakid,TEstatus,.keep_all = TRUE))) %>% 
    mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>% 
   mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>% 
  mutate(repClass=factor(repClass)) %>% 
  mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>% 
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks"))) %>%
  dplyr::filter(is.na(repClass)|repClass != "Other") %>% 
  ggplot(., aes(x=mrc, fill= TEstatus))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle(paste("TE status for eight MRCs and Family > 50 %"))

Past versions of "TEs by without other-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6dfe33e	reneeisnowhere	2024-09-23
23374bd	reneeisnowhere	2024-09-13

Eight_group_TE %>% 
  mutate(repClass_org = repClass) %>% 
  mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>% 
   dplyr::select(Peakid,repName,repClass,repFamily,repClass_org,width,TEstatus, mrc, per_ol)%>%
  distinct(Peakid, .keep_all = TRUE)%>% 
  rbind((subsetall_df %>% distinct(Peakid,TEstatus, .keep_all = TRUE))) %>% 
    mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>% 
   mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
  mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(mrc != "not_mrc") %>%
  dplyr::filter(is.na(repClass)|repClass != "Other") %>% 
  group_by(TEstatus, mrc) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>% 
  rowwise() %>% 
  mutate(perc_TE= (TE_peak/sum(c_across(TE_peak:not_TE_peak)))*100) %>% 
  kable(., caption = "Unique Peak TE status counts for each using >50% of TE LINEs,SINEs, LTRs,DNAs,and Retroposons") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)%>% 
  scroll_box(height = "500px")

Unique Peak TE status counts for each using >50% of TE LINEs,SINEs, LTRs,DNAs,and Retroposons

mrc	TE_peak	not_TE_peak	perc_TE
EAR_close	1415	2574	35.47255
EAR_open	878	1761	33.27018
ESR_OC	433	667	39.36364
ESR_close	2739	5698	32.46415
ESR_open	1648	2841	36.71196
LR_close	4581	8251	35.69981
LR_open	10659	15560	40.65372
NR	26417	48978	35.03813
all_peaks	48770	86330	36.09919

Eight_group_TE %>% 
   mutate(repClass_org = repClass) %>% 
  # mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>% 
   dplyr::select(Peakid,repName,repClass,repFamily,repClass_org,width,TEstatus, mrc, per_ol)%>%
  distinct(Peakid, .keep_all = TRUE)%>% 
  rbind(subsetall_df ) %>% 
    mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>% 
   mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>% 
  mutate(repClass=factor(repClass)) %>% 
  mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>% 
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks"))) %>%
  ggplot(., aes(x=mrc, fill= TEstatus))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle(paste("TE status for eight MRCs and Family > 50 %"))

Past versions of "with out the other-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Eight_group_TE %>% 
  mutate(repClass_org = repClass) %>% 
  mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>% 
   dplyr::select(Peakid,repName,repClass,repFamily,repClass_org,width,TEstatus, mrc, per_ol)%>%
  distinct(Peakid, .keep_all = TRUE)%>% 
  rbind(subsetall_df) %>% 
    mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>% 
   mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
  mutate(repClass=factor(repClass)) %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
  group_by(TEstatus, mrc) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>% 
  rowwise() %>% 
  mutate(perc_TE= (TE_peak/sum(c_across(TE_peak:not_TE_peak)))*100) %>% 
  kable(., caption = "Unique Peak TE status counts for each  using >50% of TE") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)%>% 
  scroll_box(height = "500px")

Unique Peak TE status counts for each using >50% of TE

mrc	TE_peak	not_TE_peak	perc_TE
EAR_close	1722	2574	40.08380
EAR_open	1397	1761	44.23686
ESR_OC	493	667	42.50000
ESR_close	3651	5698	39.05231
ESR_open	2431	2841	46.11153
LR_close	5821	8251	41.36583
LR_open	12977	15560	45.47430
NR	37350	48978	43.26522
all_peaks	120003	102381	53.96207

Class_status_df <-
  Eight_group_TE %>% 
  dplyr::filter(mrc != "not_mrc") %>%
    # mutate(mrc="all_peaks") %>% 
  # rbind(subsetall_df) %>% 
   mutate(Sine_status = if_else(is.na(repClass),"not_sine",
                               if_else(repClass=="SINE","sine_peak", "not_sine"))) %>% 
   mutate(Line_status = if_else(is.na(repClass),"not_line",
                                if_else(repClass=="LINE","line_peak", "not_line"))) %>%
   mutate(LTR_status = if_else(is.na(repClass),"not_LTR",
                               if_else(repClass=="LTR","LTR_peak", "not_LTR"))) %>% 
   mutate(DNA_status = if_else(is.na(repClass),"not_DNA",
                                if_else(repClass=="DNA","DNA_peak", "not_DNA"))) %>% 
   mutate(Retro_status = if_else(is.na(repClass)&is.na(per_ol),"not_Retro",
                                if_else(repClass=="Retroposon","Retro_peak", "not_Retro"))) %>% 
     # mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
     mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>% 
   # dplyr::filter(mrc != "not_mrc") %>%
 mutate(Sine_status=factor(Sine_status, levels = c("sine_peak","not_sine")),
       Line_status=factor(Line_status, levels =c("line_peak","not_line")),
       LTR_status=factor(LTR_status, levels =c("LTR_peak","not_LTR")),
       DNA_status=factor(DNA_status, levels =c("DNA_peak","not_DNA")),
       Retro_status=factor(Retro_status, levels =c("Retro_peak","not_Retro"))) %>% 
  # dplyr::filter(per_ol>per_cov|is.na(per_ol)) %>% 
   mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks")))

Class_status_df  %>% distinct(Peakid,.keep_all = TRUE) %>% 
  group_by(mrc, TEstatus) %>% 
  tally

# A tibble: 16 × 3
# Groups:   mrc [8]
   mrc       TEstatus        n
   <fct>     <fct>       <int>
 1 EAR_open  TE_peak      2054
 2 EAR_open  not_TE_peak  1104
 3 EAR_close TE_peak      2804
 4 EAR_close not_TE_peak  1492
 5 ESR_open  TE_peak      3519
 6 ESR_open  not_TE_peak  1753
 7 ESR_close TE_peak      5934
 8 ESR_close not_TE_peak  3415
 9 ESR_OC    TE_peak       803
10 ESR_OC    not_TE_peak   357
11 LR_open   TE_peak     20072
12 LR_open   not_TE_peak  8465
13 LR_close  TE_peak      9216
14 LR_close  not_TE_peak  4856
15 NR        TE_peak     57561
16 NR        not_TE_peak 28767

Sine status

Class_status_df %>% 
  distinct(Peakid, mrc, Sine_status) %>% 
  ggplot(., aes(x=mrc, fill= Sine_status))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle("Sine_status")

Past versions of "status plots sine-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Class_status_df %>% 
  distinct(Peakid, mrc, Sine_status) %>% 
  group_by(mrc,Sine_status) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = Sine_status, values_from = n) %>% 
  mutate(Per_peak = sine_peak/(not_sine+sine_peak)*100) %>% 
  kable(., caption= "Sine status of unique Peaks") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) 

Sine status of unique Peaks

mrc	sine_peak	not_sine	Per_peak
EAR_open	800	2785	22.31520
EAR_close	1232	3638	25.29774
ESR_open	1379	4605	23.04479
ESR_close	2458	8046	23.40061
ESR_OC	388	956	28.86905
LR_open	8817	24248	26.66566
LR_close	3626	12252	22.83663
NR	23227	74915	23.66673

Line status

Class_status_df %>% 
  distinct(Peakid, mrc, Line_status) %>% 
  ggplot(., aes(x=mrc, fill= Line_status))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle("Line_status")

Past versions of "status plots lines-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Class_status_df %>% 
  distinct(Peakid, mrc, Line_status) %>% 
  group_by(mrc,Line_status) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = Line_status, values_from = n) %>% 
  mutate(Per_peak = line_peak/(not_line+line_peak)*100) %>% 
  kable(., caption= "Line status of unique Peaks") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) 

Line status of unique Peaks

mrc	line_peak	not_line	Per_peak
EAR_open	603	2882	17.30273
EAR_close	950	3763	20.15701
ESR_open	1126	4749	19.16596
ESR_close	1939	8278	18.97817
ESR_OC	276	1023	21.24711
LR_open	7051	25214	21.85340
LR_close	3240	12339	20.79723
NR	18221	77137	19.10799

LTR status

Class_status_df %>% 
  distinct(Peakid, mrc,LTR_status) %>% 
  ggplot(., aes(x=mrc, fill= LTR_status))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle("LTR_status")

Past versions of "status plots ltrs-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Class_status_df %>% 
  distinct(Peakid, mrc, LTR_status) %>% 
  group_by(mrc,LTR_status) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = LTR_status, values_from = n) %>% 
  mutate(Per_peak = LTR_peak/(not_LTR+LTR_peak)*100) %>% 
  kable(., caption= "LTR status of unique Peaks") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) 

LTR status of unique Peaks

mrc	LTR_peak	not_LTR	Per_peak
EAR_open	356	2972	10.69712
EAR_close	674	3905	14.71937
ESR_open	621	4969	11.10912
ESR_close	1264	8614	12.79611
ESR_OC	198	1053	15.82734
LR_open	4871	26033	15.76171
LR_close	2242	12784	14.92080
NR	12012	79598	13.11211

DNA status

Class_status_df %>% 
  distinct(Peakid, mrc, DNA_status) %>% 
  ggplot(., aes(x=mrc, fill= DNA_status))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle("DNA_status")

Past versions of "status plots dna-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Class_status_df %>% 
  distinct(Peakid, mrc, DNA_status) %>% 
  group_by(mrc,DNA_status) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = DNA_status, values_from = n) %>% 
  mutate(Per_peak = DNA_peak/(not_DNA+DNA_peak)*100) %>% 
  kable(., caption= "DNA status of unique Peaks") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) 

DNA status of unique Peaks

mrc	DNA_peak	not_DNA	Per_peak
EAR_open	269	3045	8.117079
EAR_close	363	4137	8.066667
ESR_open	486	5091	8.714363
ESR_close	777	9017	7.933429
ESR_OC	124	1112	10.032362
LR_open	3311	27192	10.854670
LR_close	1363	13484	9.180306
NR	8093	83036	8.880817

Retroposon status

Class_status_df %>% 
  distinct(Peakid, mrc, Retro_status) %>% 
  ggplot(., aes(x=mrc, fill= Retro_status))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle("Retroposon status")

Past versions of "status plots Retroposons-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13

Class_status_df %>% 
  distinct(Peakid, mrc, Retro_status) %>% 
  group_by(mrc,Retro_status) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = Retro_status, values_from = n) %>% 
  mutate(Per_peak = Retro_peak/(not_Retro+Retro_peak)*100) %>% 
  kable(., caption= "Retro status of unique Peaks") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) 

Retro status of unique Peaks

mrc	Retro_peak	not_Retro	Per_peak
EAR_open	21	3149	0.6624606
EAR_close	7	4292	0.1628286
ESR_open	40	5260	0.7547170
ESR_close	11	9346	0.1175590
ESR_OC	2	1159	0.1722653
LR_open	36	28529	0.1260284
LR_close	18	14067	0.1277955
NR	148	86286	0.1712289

Class_status_df %>% 
  dplyr::filter(Peakid =="chr2.178547784.178549172")

                    Peakid repName repClass repClass_org repFamily width
1 chr2.178547784.178549172 OldhAT1      DNA          DNA    hAT-Ac    91
  TEstatus    mrc per_ol Sine_status Line_status LTR_status DNA_status
1  TE_peak ESR_OC      1    not_sine    not_line    not_LTR   DNA_peak
  Retro_status
1    not_Retro

This code is for Chi analysis

##### VERY OLD... I learned a better way!
####### LOoKing at the results from TE counts across clusters##### with cutoff

chi_TE_Eight <- Eight_group_TE %>% 
  # dplyr::filter(is.na(per_ol)|per_ol>.5) %>% 
  dplyr::select(Peakid,TEstatus, mrc)%>% 
  distinct(Peakid, .keep_all = TRUE) %>% 
  group_by(mrc,TEstatus) %>% 
  tally %>% 
  ungroup() %>% 
  pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>% 
  column_to_rownames("mrc") 

chi_TE_nine_mat <- chi_TE_Eight %>% as.matrix

EARopenvNR <- matrix(c(chi_TE_nine_mat[2,1],chi_TE_nine_mat[2,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)

EARclosevNR <- matrix(c(chi_TE_nine_mat[1,1],chi_TE_nine_mat[1,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)

ESRopenvNR <- matrix(c(chi_TE_nine_mat[5,1],chi_TE_nine_mat[5,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)

ESRclosevNR <- matrix(c(chi_TE_nine_mat[4,1],chi_TE_nine_mat[4,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)

ESROCvNR <- matrix(c(chi_TE_nine_mat[3,1],chi_TE_nine_mat[3,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)


LRopenvNR <- matrix(c(chi_TE_nine_mat[7,1],chi_TE_nine_mat[7,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE) %>% chisq.test(.)

LRclosevNR <- matrix(c(chi_TE_nine_mat[6,1],chi_TE_nine_mat[6,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)

pvalue <- c(EARclosevNR$p.value, 
            EARopenvNR$p.value,
            ESROCvNR$p.value,
            ESRclosevNR$p.value,
            ESRopenvNR$p.value,
            LRclosevNR$p.value, 
            LRopenvNR$p.value, 
            "na",
            "not checked")

chi_TE_Eight %>% 
  cbind(pvalue) %>% 
  mutate(pvalue= as.numeric(pvalue)) %>% 
  mutate(signif=if_else(pvalue<0.005,"***",if_else(pvalue<0.01,"**",if_else(pvalue<0.05,"*","ns")))) %>% 
  mutate(per_TE=TE_peak/(TE_peak+not_TE_peak)*100) %>% 
  mutate(per_TE=sprintf("%.2f%% ",per_TE)) %>% 
    kable(., caption = "Unique Peak TE status with all TEs for each MRC, >50% TE coverage") %>% 
   kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) %>% 
  scroll_box(height = "500px")

Unique Peak TE status with all TEs for each MRC, >50% TE coverage

	TE_peak	not_TE_peak	pvalue	signif	per_TE
EAR_close	2804	1492	0.0584807	ns	65.27%
EAR_open	2054	1104	0.0580158	ns	65.04%
ESR_OC	803	357	0.0722983	ns	69.22%
ESR_close	5934	3415	0.0000000	***	63.47%
ESR_open	3519	1753	0.9264766	ns	66.75%
LR_close	9216	4856	0.0059044	**	65.49%
LR_open	20072	8465	0.0000000	***	70.34%
NR	57561	28767	NA	NA	66.68%
not_mrc	2186	1199	NA	NA	64.58%

sub-Class breakdown

per_cov <- 0.0
 
ggline_df <-Line_repeats %>% 
  as.data.frame() %>% 
 tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
  dplyr::select(Peakid,repName,repClass, repFamily,width) %>%
   mutate(repClass_org=repClass) %>% 
   mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
                            if_else(repClass_org=="Retroposon",repClass_org,
                                    if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>% 
  mutate(TEstatus ="TE_peak", mrc="h.genome", per_ol = "NA") %>% 
    rbind(Eight_group_TE %>% dplyr::filter(repClass=="LINE") %>% mutate(mrc="all_peaks") %>%  mutate(repClass_org=repClass)) 
  

ggsine_df <-
  Sine_repeats %>% 
  as.data.frame() %>% 
 tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
  dplyr::select(Peakid,repName,repClass, repFamily,width) %>% 
  mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>%
  mutate(repClass_org=repClass) %>% 
   mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
                            if_else(repClass_org=="Retroposon",repClass_org,
                                    if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>% 
    rbind(Eight_group_TE %>% dplyr::filter(repClass=="SINE") %>% mutate(mrc="all_peaks") %>% mutate(repClass_org=repClass))

ggLTR_df <-LTR_repeats %>% 
   as.data.frame() %>% 
 tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
  dplyr::select(Peakid,repName,repClass, repFamily,width) %>% 
  mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>%
  mutate(repClass_org=repClass) %>% 
   mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
                            if_else(repClass_org=="Retroposon",repClass_org,
                                    if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>% 
    rbind(Eight_group_TE %>% dplyr::filter(repClass=="LTR") %>% mutate(mrc="all_peaks") %>% mutate(repClass_org=repClass))


ggDNA_df <-DNA_repeats %>% 
 
  as.data.frame() %>% 
 tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
  dplyr::select(Peakid,repName,repClass, repFamily,width) %>% 
  mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>%
  mutate(repClass_org=repClass) %>% 
   mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
                            if_else(repClass_org=="Retroposon",repClass_org,
                                    if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>% 
    rbind(Eight_group_TE %>% dplyr::filter(repClass=="DNA") %>% mutate(mrc="all_peaks") %>% mutate(repClass_org=repClass))


ggretroposon_df <-retroposon_repeats %>% 
 
  as.data.frame() %>% 
 tidyr::unite(Peakid,seqnames:end, sep= ".") %>% 
  dplyr::select(Peakid,repName,repClass, repFamily,width) %>% 
  mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>%
  mutate(repClass_org=repClass) %>% 
   mutate(repClass=if_else(##relable repClass with other
    repClass_org=="LINE", repClass_org,
    if_else(repClass_org=="SINE",repClass_org,
            if_else(repClass_org=="LTR", repClass_org, 
                    if_else(repClass_org=="DNA", repClass_org,
                            if_else(repClass_org=="Retroposon",repClass_org,
                                    if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>% 
    rbind(Eight_group_TE %>% dplyr::filter(repClass=="Retroposon") %>% mutate(mrc="all_peaks") %>% mutate(repClass_org=repClass)) 

Eight group by subset TE type

Eight_group_TE

                        Peakid         repName   repClass   repClass_org
1           chr1.180766.180946       (ACCCTA)n      Other  Simple_repeat
2           chr1.181330.181576            TAR1      Other      Satellite
3           chr1.191314.191869            <NA>       <NA>           <NA>
4           chr1.267952.268047            <NA>       <NA>           <NA>
5           chr1.629906.629985            <NA>       <NA>           <NA>
6           chr1.633083.633560            <NA>       <NA>           <NA>
7           chr1.633980.634076            <NA>       <NA>           <NA>
8           chr1.778372.779265            FRAM       SINE           SINE
9           chr1.821114.821757            <NA>       <NA>           <NA>
10          chr1.826694.827783          G-rich      Other Low_complexity
11          chr1.831387.831615            <NA>       <NA>           <NA>
12          chr1.832234.832467            <NA>       <NA>           <NA>
13          chr1.865730.866534           MLT1B        LTR            LTR
14          chr1.869659.870171            MIRb       SINE           SINE
15          chr1.876264.877232            <NA>       <NA>           <NA>
16          chr1.904462.904943            <NA>       <NA>           <NA>
17          chr1.906836.907104            <NA>       <NA>           <NA>
18          chr1.910373.911600            <NA>       <NA>           <NA>
19          chr1.920872.921733            <NA>       <NA>           <NA>
20          chr1.923524.924105        (AGCCC)n      Other  Simple_repeat
21          chr1.923524.924105          (GGC)n      Other  Simple_repeat
22          chr1.924253.925000       (GGCCCT)n      Other  Simple_repeat
23          chr1.935585.936101            <NA>       <NA>           <NA>
24          chr1.938056.938631            <NA>       <NA>           <NA>
25          chr1.940336.941227            <NA>       <NA>           <NA>
26          chr1.941303.942010          (CCG)n      Other  Simple_repeat
27          chr1.951331.951700            <NA>       <NA>           <NA>
28          chr1.958864.959581        (CCGCC)n      Other  Simple_repeat
29          chr1.960492.960762      (GCCCGGA)n      Other  Simple_repeat
30          chr1.961274.961703            <NA>       <NA>           <NA>
31          chr1.966173.967330        (GCGGG)n      Other  Simple_repeat
32          chr1.975926.976584         (CCAC)n      Other  Simple_repeat
33          chr1.979686.980042            <NA>       <NA>           <NA>
34          chr1.983936.984542            <NA>       <NA>           <NA>
35         chr1.998987.1000942       (CCCCCG)n      Other  Simple_repeat
36         chr1.998987.1000942          G-rich      Other Low_complexity
37         chr1.998987.1000942          G-rich      Other Low_complexity
38         chr1.998987.1000942        (GGCCG)n      Other  Simple_repeat
39        chr1.1001752.1002056            <NA>       <NA>           <NA>
40        chr1.1005022.1005735      (CTCCCCC)n      Other  Simple_repeat
41        chr1.1005022.1005735           MLT1H        LTR            LTR
42        chr1.1012993.1014466           AluJb       SINE           SINE
43        chr1.1019222.1019800          AluJr4       SINE           SINE
44        chr1.1019222.1019800          G-rich      Other Low_complexity
45        chr1.1019222.1019800          G-rich      Other Low_complexity
46        chr1.1020091.1020770         (CCCC)n      Other  Simple_repeat
47        chr1.1020091.1020770        (GCCCC)n      Other  Simple_repeat
48        chr1.1020091.1020770          (CGC)n      Other  Simple_repeat
49        chr1.1020091.1020770          G-rich      Other Low_complexity
50        chr1.1020798.1021734            <NA>       <NA>           <NA>
51        chr1.1024609.1025344       (GCCAGG)n      Other  Simple_repeat
52        chr1.1032047.1033515       (GCACAC)n      Other  Simple_repeat
53        chr1.1032047.1033515       (CCAGCC)n      Other  Simple_repeat
54        chr1.1040421.1040970          G-rich      Other Low_complexity
55        chr1.1042221.1042721            <NA>       <NA>           <NA>
56        chr1.1044510.1044915            <NA>       <NA>           <NA>
57        chr1.1050794.1051096      (CTCTGCT)n      Other  Simple_repeat
58        chr1.1059017.1059993         GA-rich      Other Low_complexity
59        chr1.1059017.1059993        (GCCCC)n      Other  Simple_repeat
60        chr1.1063729.1064442        (CCTGG)n      Other  Simple_repeat
61        chr1.1069144.1069625            <NA>       <NA>           <NA>
62        chr1.1074089.1075165         GA-rich      Other Low_complexity
63        chr1.1079426.1080626        (CCCCG)n      Other  Simple_repeat
64        chr1.1086553.1086898            <NA>       <NA>           <NA>
65        chr1.1115826.1116844      (CCCCAGC)n      Other  Simple_repeat
66        chr1.1115826.1116844          G-rich      Other Low_complexity
67        chr1.1115826.1116844       (AGGCGG)n      Other  Simple_repeat
68        chr1.1121843.1122546            <NA>       <NA>           <NA>
69        chr1.1122855.1123828            <NA>       <NA>           <NA>
70        chr1.1157422.1158357    (CCATCCCCG)n      Other  Simple_repeat
71        chr1.1157422.1158357        (CAGCC)n      Other  Simple_repeat
72        chr1.1201351.1201790            <NA>       <NA>           <NA>
73        chr1.1206497.1206728            <NA>       <NA>           <NA>
74        chr1.1217914.1218541            <NA>       <NA>           <NA>
75        chr1.1222461.1223410       (CAGGCC)n      Other  Simple_repeat
76        chr1.1231222.1232501            MIRb       SINE           SINE
77        chr1.1231222.1232501          (GCG)n      Other  Simple_repeat
78        chr1.1231222.1232501       (CCGCGC)n      Other  Simple_repeat
79        chr1.1258653.1259599              L2       LINE           LINE
80        chr1.1258653.1259599          MER54A        LTR            LTR
81        chr1.1264810.1265699           AluSx       SINE           SINE
82        chr1.1264810.1265699           MER68        LTR            LTR
83        chr1.1264810.1265699           (GT)n      Other  Simple_repeat
84        chr1.1264810.1265699           AluSg       SINE           SINE
85        chr1.1272606.1275183         (CCTG)n      Other  Simple_repeat
86        chr1.1272606.1275183          (CCG)n      Other  Simple_repeat
87        chr1.1272606.1275183          G-rich      Other Low_complexity
88        chr1.1272606.1275183          G-rich      Other Low_complexity
89        chr1.1281619.1282373            MIRb       SINE           SINE
90        chr1.1284477.1285871            <NA>       <NA>           <NA>
91        chr1.1290218.1290492            <NA>       <NA>           <NA>
92        chr1.1291645.1292246            <NA>       <NA>           <NA>
93        chr1.1295013.1296217            <NA>       <NA>           <NA>
94        chr1.1299020.1299381            <NA>       <NA>           <NA>
95        chr1.1304757.1305110          G-rich      Other Low_complexity
96        chr1.1307243.1309120        (CCGGC)n      Other  Simple_repeat
97        chr1.1307243.1309120          (GGC)n      Other  Simple_repeat
98        chr1.1307243.1309120       (GGGCGC)n      Other  Simple_repeat
99        chr1.1307243.1309120            (G)n      Other  Simple_repeat
100       chr1.1307243.1309120         (GGCG)n      Other  Simple_repeat
101       chr1.1318139.1318563            AluY       SINE           SINE
102       chr1.1318139.1318563           L1MEg       LINE           LINE
103       chr1.1318139.1318563           AluJb       SINE           SINE
104       chr1.1324254.1325470            <NA>       <NA>           <NA>
105       chr1.1340206.1340601            <NA>       <NA>           <NA>
106       chr1.1347756.1348412      (ACTGGTG)n      Other  Simple_repeat
107       chr1.1348700.1349993        (GGCGC)n      Other  Simple_repeat
108       chr1.1348700.1349993        (CGCCC)n      Other  Simple_repeat
109       chr1.1348700.1349993          G-rich      Other Low_complexity
110       chr1.1359695.1361211           (CA)n      Other  Simple_repeat
111       chr1.1362084.1362269            <NA>       <NA>           <NA>
112       chr1.1371659.1372320           MER20        DNA            DNA
113       chr1.1374485.1375649      (GCCCGGC)n      Other  Simple_repeat
114       chr1.1381510.1382163          MER66C        LTR            LTR
115       chr1.1398666.1400657          G-rich      Other Low_complexity
116       chr1.1398666.1400657          (CGC)n      Other  Simple_repeat
117       chr1.1406544.1408077          G-rich      Other Low_complexity
118       chr1.1406544.1408077          G-rich      Other Low_complexity
119       chr1.1406544.1408077          AluYh9       SINE           SINE
120       chr1.1406544.1408077          AluSx3       SINE           SINE
121       chr1.1406544.1408077           AluJb       SINE           SINE
122       chr1.1419325.1419926            <NA>       <NA>           <NA>
123       chr1.1425850.1426618       (GGAGCT)n      Other  Simple_repeat
124       chr1.1425850.1426618         GA-rich      Other Low_complexity
125       chr1.1431779.1432224            <NA>       <NA>           <NA>
126       chr1.1433239.1434184            <NA>       <NA>           <NA>
127       chr1.1435372.1435855         (GTGC)n      Other  Simple_repeat
128       chr1.1435372.1435855          G-rich      Other Low_complexity
129       chr1.1435372.1435855         (CGAG)n      Other  Simple_repeat
130       chr1.1440773.1441353            <NA>       <NA>           <NA>
131       chr1.1461959.1462874            <NA>       <NA>           <NA>
132       chr1.1470950.1471970            LTR7        LTR            LTR
133       chr1.1470950.1471970          LTR10A        LTR            LTR
134       chr1.1470950.1471970      (CCCCGCC)n      Other  Simple_repeat
135       chr1.1470950.1471970          (CGG)n      Other  Simple_repeat
136       chr1.1478318.1478636            <NA>       <NA>           <NA>
137       chr1.1479180.1480138            <NA>       <NA>           <NA>
138       chr1.1481813.1482116            <NA>       <NA>           <NA>
139       chr1.1504730.1505728           (GT)n      Other  Simple_repeat
140       chr1.1504730.1505728           LTR13        LTR            LTR
141       chr1.1511450.1512402          (CGG)n      Other  Simple_repeat
142       chr1.1517839.1518610           (AC)n      Other  Simple_repeat
143       chr1.1533392.1533942            <NA>       <NA>           <NA>
144       chr1.1535548.1536277            <NA>       <NA>           <NA>
145       chr1.1536431.1537029              L2       LINE           LINE
146       chr1.1537912.1538606            <NA>       <NA>           <NA>
147       chr1.1539330.1539910            <NA>       <NA>           <NA>
148       chr1.1540541.1541018        (CGCCC)n      Other  Simple_repeat
149       chr1.1540541.1541018        (GCTCG)n      Other  Simple_repeat
150       chr1.1540541.1541018          (CCT)n      Other  Simple_repeat
151       chr1.1550842.1551382         (CACC)n      Other  Simple_repeat
152       chr1.1554541.1555504            <NA>       <NA>           <NA>
153       chr1.1574091.1575470          (GCC)n      Other  Simple_repeat
154       chr1.1574091.1575470          (GGC)n      Other  Simple_repeat
155       chr1.1574091.1575470              L2       LINE           LINE
156       chr1.1597416.1597928       (CTCCCC)n      Other  Simple_repeat
157       chr1.1599593.1599890           (GC)n      Other  Simple_repeat
158       chr1.1614287.1614554          MER65D        LTR            LTR
159       chr1.1614979.1616795           AluSg       SINE           SINE
160       chr1.1614979.1616795          G-rich      Other Low_complexity
161       chr1.1614979.1616795       (CCGTGC)n      Other  Simple_repeat
162       chr1.1624923.1626509          G-rich      Other Low_complexity
163       chr1.1628477.1629294            <NA>       <NA>           <NA>
164       chr1.1631655.1632530       (CCCCCT)n      Other  Simple_repeat
165       chr1.1631655.1632530      (CCCAGGC)n      Other  Simple_repeat
166       chr1.1636438.1637810            <NA>       <NA>           <NA>
167       chr1.1658721.1659455          (CGC)n      Other  Simple_repeat
168       chr1.1665018.1666106     (GGCCTCAG)n      Other  Simple_repeat
169       chr1.1678465.1679123            <NA>       <NA>           <NA>
170       chr1.1680992.1681250            AluY       SINE           SINE
171       chr1.1692349.1693265      (GCACCCA)n      Other  Simple_repeat
172       chr1.1724039.1724764            <NA>       <NA>           <NA>
173       chr1.1745649.1746732      (GCACCCA)n      Other  Simple_repeat
174       chr1.1745649.1746732            (T)n      Other  Simple_repeat
175       chr1.1753917.1754794            <NA>       <NA>           <NA>
176       chr1.1760576.1760840           AluJb       SINE           SINE
177       chr1.1777623.1779345          G-rich      Other Low_complexity
178       chr1.1788988.1789349            <NA>       <NA>           <NA>
179       chr1.1796843.1797274          L1ME3G       LINE           LINE
180       chr1.1799533.1800033           L1MEf       LINE           LINE
181       chr1.1827153.1827708            <NA>       <NA>           <NA>
182       chr1.1832980.1833136            <NA>       <NA>           <NA>
183       chr1.1846921.1847585         Tigger2        DNA            DNA
184       chr1.1852436.1853334          AluYm1       SINE           SINE
185       chr1.1852436.1853334           AluJr       SINE           SINE
186       chr1.1852436.1853334             L2b       LINE           LINE
187       chr1.1858673.1859607          MER119        DNA            DNA
188       chr1.1858673.1859607           AluSz       SINE           SINE
189       chr1.1858673.1859607          MER119        DNA            DNA
190       chr1.1858673.1859607           AluJo       SINE           SINE
191       chr1.1858673.1859607          MER119        DNA            DNA
192       chr1.1873139.1873487          FLAM_C       SINE           SINE
193       chr1.1873139.1873487           MLT1H        LTR            LTR
194       chr1.1876333.1876917           AluJr       SINE           SINE
195       chr1.1876333.1876917         GA-rich      Other Low_complexity
196       chr1.1876333.1876917         (CGAG)n      Other  Simple_repeat
197       chr1.1876333.1876917           AluJo       SINE           SINE
198       chr1.1876333.1876917            MIRb       SINE           SINE
199       chr1.1889911.1890468            <NA>       <NA>           <NA>
200       chr1.1890818.1892336           (CG)n      Other  Simple_repeat
201       chr1.1890818.1892336       (CGCTCC)n      Other  Simple_repeat
202       chr1.1890818.1892336       (CACGCG)n      Other  Simple_repeat
203       chr1.1890818.1892336          G-rich      Other Low_complexity
204       chr1.1890818.1892336          G-rich      Other Low_complexity
205       chr1.1897232.1897776          AluSx3       SINE           SINE
206       chr1.1897232.1897776           AluSp       SINE           SINE
207       chr1.1897232.1897776           AluJb       SINE           SINE
208       chr1.1906137.1906856           AluJo       SINE           SINE
209       chr1.1906137.1906856           AluJb       SINE           SINE
210       chr1.1906137.1906856           L1MB5       LINE           LINE
211       chr1.1906137.1906856              L2       LINE           LINE
212       chr1.1908410.1909469          G-rich      Other Low_complexity
213       chr1.1908410.1909469          AluSx1       SINE           SINE
214       chr1.1919000.1920056       (GCAGCA)n      Other  Simple_repeat
215       chr1.1919000.1920056          G-rich      Other Low_complexity
216       chr1.1925553.1926278            <NA>       <NA>           <NA>
217       chr1.1943849.1944519           MLT1D        LTR            LTR
218       chr1.1955689.1956008       (CTGCTC)n      Other  Simple_repeat
219       chr1.1959773.1960472           L1MEd       LINE           LINE
220       chr1.1969124.1969949            <NA>       <NA>           <NA>
221       chr1.1974699.1975175            <NA>       <NA>           <NA>
222       chr1.1980529.1981342       (ACCCCA)n      Other  Simple_repeat
223       chr1.1980529.1981342      ERVL-E-int        LTR            LTR
224       chr1.1989071.1989463          LTR18B        LTR            LTR
225       chr1.1989071.1989463          LTR18B        LTR            LTR
226       chr1.2003509.2004182          G-rich      Other Low_complexity
227       chr1.2003509.2004182         MER102b        DNA            DNA
228       chr1.2019259.2019820          G-rich      Other Low_complexity
229       chr1.2027695.2028304            <NA>       <NA>           <NA>
230       chr1.2044892.2045227            <NA>       <NA>           <NA>
231       chr1.2046542.2046745            <NA>       <NA>           <NA>
232       chr1.2049460.2051011           MER5A        DNA            DNA
233       chr1.2061238.2062042            <NA>       <NA>           <NA>
234       chr1.2088446.2088728             L2a       LINE           LINE
235       chr1.2091741.2091879            <NA>       <NA>           <NA>
236       chr1.2099966.2100135            <NA>       <NA>           <NA>
237       chr1.2104414.2105282            <NA>       <NA>           <NA>
238       chr1.2108429.2108851           MLT1D        LTR            LTR
239       chr1.2115746.2116344          MER21C        LTR            LTR
240       chr1.2115746.2116344           L1MEg       LINE           LINE
241       chr1.2121078.2121580           AluSx       SINE           SINE
242       chr1.2121078.2121580         MLT-int        LTR            LTR
243       chr1.2121078.2121580           MLT1A        LTR            LTR
244       chr1.2124438.2124762           MLT1A        LTR            LTR
245       chr1.2133045.2133944            <NA>       <NA>           <NA>
246       chr1.2135358.2135937            <NA>       <NA>           <NA>
247       chr1.2139882.2140325           L1MEd       LINE           LINE
248       chr1.2160122.2161174           (GT)n      Other  Simple_repeat
249       chr1.2174200.2174764            <NA>       <NA>           <NA>
250       chr1.2179979.2180774       (GACGCG)n      Other  Simple_repeat
251       chr1.2189406.2190357           MER5A        DNA            DNA
252       chr1.2190487.2190881            <NA>       <NA>           <NA>
253       chr1.2194703.2195588      (CTGGCCC)n      Other  Simple_repeat
254       chr1.2199219.2199726        (CCCAG)n      Other  Simple_repeat
255       chr1.2199219.2199726           MLT1C        LTR            LTR
256       chr1.2204373.2204898            <NA>       <NA>           <NA>
257       chr1.2205192.2205684            <NA>       <NA>           <NA>
258       chr1.2212300.2213333            <NA>       <NA>           <NA>
259       chr1.2214131.2214452        (GGCAG)n      Other  Simple_repeat
260       chr1.2227349.2228092            <NA>       <NA>           <NA>
261       chr1.2228949.2229752          (CGC)n      Other  Simple_repeat
262       chr1.2230946.2232114           (TG)n      Other  Simple_repeat
263       chr1.2240101.2240542            <NA>       <NA>           <NA>
264       chr1.2243261.2243707            <NA>       <NA>           <NA>
265       chr1.2246177.2246856           L1MB3       LINE           LINE
266       chr1.2255884.2256279            <NA>       <NA>           <NA>
267       chr1.2269073.2269782           AluJr       SINE           SINE
268       chr1.2270390.2270728            <NA>       <NA>           <NA>
269       chr1.2277707.2278599         (CACT)n      Other  Simple_repeat
270       chr1.2277707.2278599          MLT1A0        LTR            LTR
271       chr1.2279093.2279871          G-rich      Other Low_complexity
272       chr1.2279093.2279871          FLAM_C       SINE           SINE
273       chr1.2282506.2283813            <NA>       <NA>           <NA>
274       chr1.2290200.2290450            <NA>       <NA>           <NA>
275       chr1.2299140.2299784            <NA>       <NA>           <NA>
276       chr1.2304766.2305315           (CA)n      Other  Simple_repeat
277       chr1.2311386.2311782            <NA>       <NA>           <NA>
278       chr1.2314167.2314736       (GGCCCT)n      Other  Simple_repeat
279       chr1.2315568.2316198            <NA>       <NA>           <NA>
280       chr1.2322264.2322695            <NA>       <NA>           <NA>
281       chr1.2330693.2331477            <NA>       <NA>           <NA>
282       chr1.2340722.2340997            <NA>       <NA>           <NA>
283       chr1.2348014.2349104           L1MC4       LINE           LINE
284       chr1.2348014.2349104          L1MC5a       LINE           LINE
285       chr1.2355088.2355694            <NA>       <NA>           <NA>
286       chr1.2381276.2382311            MIRb       SINE           SINE
287       chr1.2382694.2382834            <NA>       <NA>           <NA>
288       chr1.2391052.2392191          G-rich      Other Low_complexity
289       chr1.2411844.2413310      (GCCGCGC)n      Other  Simple_repeat
290       chr1.2411844.2413310          G-rich      Other Low_complexity
291       chr1.2431113.2431838           (TG)n      Other  Simple_repeat
292       chr1.2431113.2431838           (GT)n      Other  Simple_repeat
293       chr1.2431113.2431838          G-rich      Other Low_complexity
294       chr1.2437690.2437991           (AC)n      Other  Simple_repeat
295       chr1.2446428.2446954            <NA>       <NA>           <NA>
296       chr1.2801563.2801991           (CA)n      Other  Simple_repeat
297       chr1.2821939.2822368        MIR1_Amn       SINE           SINE
298       chr1.2925986.2926863            <NA>       <NA>           <NA>
299       chr1.2951618.2952467            <NA>       <NA>           <NA>
300       chr1.3012603.3013220            <NA>       <NA>           <NA>
301       chr1.3060850.3061623          G-rich      Other Low_complexity
302       chr1.3066258.3066708        (GGCCA)n      Other  Simple_repeat
303       chr1.3068869.3069297          (GGC)n      Other  Simple_repeat
304       chr1.3069690.3070248           (CT)n      Other  Simple_repeat
305       chr1.3101143.3101580          (CTC)n      Other  Simple_repeat
306       chr1.3105325.3106053        (AGGCC)n      Other  Simple_repeat
307       chr1.3114790.3115158        (CCCAG)n      Other  Simple_repeat
308       chr1.3127241.3127938            <NA>       <NA>           <NA>
309       chr1.3128639.3129477           (TG)n      Other  Simple_repeat
310       chr1.3137099.3137585            <NA>       <NA>           <NA>
311       chr1.3139707.3140006            <NA>       <NA>           <NA>
312       chr1.3145570.3145786            <NA>       <NA>           <NA>
313       chr1.3146983.3147615           (GT)n      Other  Simple_repeat
314       chr1.3164665.3165159            <NA>       <NA>           <NA>
315       chr1.3170369.3171557            <NA>       <NA>           <NA>
316       chr1.3174451.3174647            MIRc       SINE           SINE
317       chr1.3180854.3182014   (CTTACACATG)n      Other  Simple_repeat
318       chr1.3186434.3187076            <NA>       <NA>           <NA>
319       chr1.3187418.3187940            <NA>       <NA>           <NA>
320       chr1.3198750.3199217            <NA>       <NA>           <NA>
321       chr1.3206334.3206966            <NA>       <NA>           <NA>
322       chr1.3219310.3219523            <NA>       <NA>           <NA>
323       chr1.3229364.3229710            <NA>       <NA>           <NA>
324       chr1.3270688.3271364            <NA>       <NA>           <NA>
325       chr1.3283828.3284221            <NA>       <NA>           <NA>
326       chr1.3290998.3291216            <NA>       <NA>           <NA>
327       chr1.3291923.3292783            <NA>       <NA>           <NA>
328       chr1.3293301.3293650            <NA>       <NA>           <NA>
329       chr1.3312979.3313889      (AGCGGAG)n      Other  Simple_repeat
330       chr1.3319905.3321153           (TG)n      Other  Simple_repeat
331       chr1.3323082.3323599            <NA>       <NA>           <NA>
332       chr1.3328038.3328727           MER20        DNA            DNA
333       chr1.3329802.3330225            <NA>       <NA>           <NA>
334       chr1.3348889.3350013            <NA>       <NA>           <NA>
335       chr1.3350746.3351295            <NA>       <NA>           <NA>
336       chr1.3352458.3353164        (CTTTC)n      Other  Simple_repeat
337       chr1.3360711.3361349            <NA>       <NA>           <NA>
338       chr1.3366105.3366473            <NA>       <NA>           <NA>
339       chr1.3369779.3370263             L2b       LINE           LINE
340       chr1.3375039.3375568            <NA>       <NA>           <NA>
341       chr1.3377729.3378070            <NA>       <NA>           <NA>
342       chr1.3378423.3378869             MIR       SINE           SINE
343       chr1.3393116.3394329            <NA>       <NA>           <NA>
344       chr1.3408398.3409463            <NA>       <NA>           <NA>
345       chr1.3410241.3410926            <NA>       <NA>           <NA>
346       chr1.3423164.3423823            <NA>       <NA>           <NA>
347       chr1.3424432.3425112            AluY       SINE           SINE
348       chr1.3431233.3431647            <NA>       <NA>           <NA>
349       chr1.3453094.3453671            MIR3       SINE           SINE
350       chr1.3454051.3455050            MIRc       SINE           SINE
351       chr1.3460108.3461001            <NA>       <NA>           <NA>
352       chr1.3471265.3472241          G-rich      Other Low_complexity
353       chr1.3479748.3480669          G-rich      Other Low_complexity
354       chr1.3483805.3484270            <NA>       <NA>           <NA>
355       chr1.3491182.3492272      (GCACCCG)n      Other  Simple_repeat
356       chr1.3491182.3492272        (GCCCC)n      Other  Simple_repeat
357       chr1.3491182.3492272          G-rich      Other Low_complexity
358       chr1.3492412.3492583            <NA>       <NA>           <NA>
359       chr1.3501476.3501969            <NA>       <NA>           <NA>
360       chr1.3502068.3502639          G-rich      Other Low_complexity
361       chr1.3529405.3529760      (GCCCCCA)n      Other  Simple_repeat
362       chr1.3530500.3531732       (CCGGCC)n      Other  Simple_repeat
363       chr1.3530500.3531732        (GCCCC)n      Other  Simple_repeat
364       chr1.3530500.3531732       (CACAGA)n      Other  Simple_repeat
365       chr1.3542902.3543816            <NA>       <NA>           <NA>
366       chr1.3548154.3548665            <NA>       <NA>           <NA>
367       chr1.3565347.3565802            <NA>       <NA>           <NA>
368       chr1.3565983.3566425            <NA>       <NA>           <NA>
369       chr1.3567877.3568284            <NA>       <NA>           <NA>
370       chr1.3586032.3586600           (TG)n      Other  Simple_repeat
371       chr1.3587043.3587817           LTR62        LTR            LTR
372       chr1.3590141.3590937            <NA>       <NA>           <NA>
373       chr1.3611051.3612045       (CCGCCC)n      Other  Simple_repeat
374       chr1.3611051.3612045        (CCCCT)n      Other  Simple_repeat
375       chr1.3611051.3612045       (CCGCCC)n      Other  Simple_repeat
376       chr1.3611051.3612045      (GACCTCA)n      Other  Simple_repeat
377       chr1.3613317.3614126             L2b       LINE           LINE
378       chr1.3613317.3614126        Arthur1A        DNA            DNA
379       chr1.3614836.3615056            <NA>       <NA>           <NA>
380       chr1.3618742.3619432            <NA>       <NA>           <NA>
381       chr1.3624107.3625115            <NA>       <NA>           <NA>
382       chr1.3625399.3625845            <NA>       <NA>           <NA>
383       chr1.3643071.3643418            <NA>       <NA>           <NA>
384       chr1.3649859.3650242            <NA>       <NA>           <NA>
385       chr1.3651361.3651817            <NA>       <NA>           <NA>
386       chr1.3652579.3653272            <NA>       <NA>           <NA>
387       chr1.3654627.3654991             MIR       SINE           SINE
388       chr1.3668739.3669415      (GCAGGTG)n      Other  Simple_repeat
389       chr1.3671779.3672121            <NA>       <NA>           <NA>
390       chr1.3674477.3674905            <NA>       <NA>           <NA>
391       chr1.3684097.3684335            <NA>       <NA>           <NA>
392       chr1.3695412.3696079             L2b       LINE           LINE
393       chr1.3703258.3703775            <NA>       <NA>           <NA>
394       chr1.3713084.3713447            <NA>       <NA>           <NA>
395       chr1.3717952.3718433            <NA>       <NA>           <NA>
396       chr1.3724250.3724826           AluSz       SINE           SINE
397       chr1.3727090.3727719            <NA>       <NA>           <NA>
398       chr1.3746238.3747598      (GGCGCGG)n      Other  Simple_repeat
399       chr1.3771681.3773111            <NA>       <NA>           <NA>
400       chr1.3774771.3775727        (CTCCC)n      Other  Simple_repeat
401       chr1.3774771.3775727            MIRc       SINE           SINE
402       chr1.3785163.3785668            <NA>       <NA>           <NA>
403       chr1.3790117.3790721            <NA>       <NA>           <NA>
404       chr1.3795662.3796920        (GGGTG)n      Other  Simple_repeat
405       chr1.3795662.3796920           MER4A        LTR            LTR
406       chr1.3801559.3801731           LTR13        LTR            LTR
407       chr1.3804024.3804395     HERVK13-int        LTR            LTR
408       chr1.3811098.3811607             MIR       SINE           SINE
409       chr1.3811098.3811607            MIRb       SINE           SINE
410       chr1.3827801.3828340             L2a       LINE           LINE
411       chr1.3856572.3857938      (CCGCGCC)n      Other  Simple_repeat
412       chr1.3869473.3870241           MER5B        DNA            DNA
413       chr1.3869473.3870241           MLT1B        LTR            LTR
414       chr1.3900015.3901563            (C)n      Other  Simple_repeat
415       chr1.3910729.3911379            MIRc       SINE           SINE
416       chr1.4161765.4162281       (TCTTTC)n      Other  Simple_repeat
417       chr1.4161765.4162281       (TCTGTC)n      Other  Simple_repeat
418       chr1.4375895.4376168           L1ME2       LINE           LINE
419       chr1.4603232.4603795          MER54B        LTR            LTR
420       chr1.4605079.4605978              L2       LINE           LINE
421       chr1.4627614.4627810            <NA>       <NA>           <NA>
422       chr1.4650520.4650755            <NA>       <NA>           <NA>
423       chr1.4652641.4653157            MIRb       SINE           SINE
424       chr1.4655205.4656772          G-rich      Other Low_complexity
425       chr1.4690980.4691432            <NA>       <NA>           <NA>
426       chr1.4696177.4696502          LTR90B        LTR            LTR
427       chr1.4699354.4699705            <NA>       <NA>           <NA>
428       chr1.4710778.4711524       Tigger19b        DNA            DNA
429       chr1.4750133.4750589            <NA>       <NA>           <NA>
430       chr1.4755434.4756085          MER31A        LTR            LTR
431       chr1.4778082.4778726           (TC)n      Other  Simple_repeat
432       chr1.4805919.4806295             L2b       LINE           LINE
433       chr1.4805919.4806295           L1ME1       LINE           LINE
434       chr1.4826064.4826354            <NA>       <NA>           <NA>
435       chr1.4837755.4838070           AluJb       SINE           SINE
436       chr1.4871044.4871789           (AC)n      Other  Simple_repeat
437       chr1.5119400.5119927          LTR37A        LTR            LTR
438       chr1.5141116.5141448        MIR1_Amn       SINE           SINE
439       chr1.5164296.5164504          MLT1J2        LTR            LTR
440       chr1.5171947.5172514        L4_C_Mam       LINE           LINE
441       chr1.5223363.5223584            <NA>       <NA>           <NA>
442       chr1.5239938.5240317          MLT1H2        LTR            LTR
443       chr1.5409467.5409801            <NA>       <NA>           <NA>
444       chr1.5423163.5423597            <NA>       <NA>           <NA>
445       chr1.5456046.5456315             L2a       LINE           LINE
446       chr1.5482025.5482306            <NA>       <NA>           <NA>
447       chr1.5509807.5510171      (GGAGGAG)n      Other  Simple_repeat
448       chr1.5514152.5514830             L2a       LINE           LINE
449       chr1.5514152.5514830             L2a       LINE           LINE
450       chr1.5551482.5551970            MIRc       SINE           SINE
451       chr1.5551482.5551970            MIRc       SINE           SINE
452       chr1.5597308.5597736           MLT1B        LTR            LTR
453       chr1.5611442.5612135            <NA>       <NA>           <NA>
454       chr1.5620921.5621368            <NA>       <NA>           <NA>
455       chr1.5632264.5632512            <NA>       <NA>           <NA>
456       chr1.5646461.5646800             L2a       LINE           LINE
457       chr1.5647203.5647628          MER77B        LTR            LTR
458       chr1.5652105.5652782            MIRb       SINE           SINE
459       chr1.5660042.5660561            <NA>       <NA>           <NA>
460       chr1.5745798.5746363       (GGACCT)n      Other  Simple_repeat
461       chr1.5752206.5753204            <NA>       <NA>           <NA>
462       chr1.5757962.5758663           (CA)n      Other  Simple_repeat
463       chr1.5771003.5771489            <NA>       <NA>           <NA>
464       chr1.5798334.5798533            <NA>       <NA>           <NA>
465       chr1.5847058.5847720            MIRb       SINE           SINE
466       chr1.5847058.5847720          MLT1A0        LTR            LTR
467       chr1.5913435.5913775            <NA>       <NA>           <NA>
468       chr1.5915833.5916379            <NA>       <NA>           <NA>
469       chr1.5975091.5975699            <NA>       <NA>           <NA>
470       chr1.5980426.5980897             L2a       LINE           LINE
471       chr1.5982938.5983117            L1M5       LINE           LINE
472       chr1.5983391.5983681           MER68        LTR            LTR
473       chr1.5992012.5992993            <NA>       <NA>           <NA>
474       chr1.6002300.6003138            MIRc       SINE           SINE
475       chr1.6006931.6007332            <NA>       <NA>           <NA>
476       chr1.6012803.6013365       (GGAGGT)n      Other  Simple_repeat
477       chr1.6012803.6013365             L2b       LINE           LINE
478       chr1.6016177.6016620            <NA>       <NA>           <NA>
479       chr1.6026089.6026455            <NA>       <NA>           <NA>
480       chr1.6033980.6034856             L2a       LINE           LINE
481       chr1.6041320.6041845           (CT)n      Other  Simple_repeat
482       chr1.6052383.6053382           AluJb       SINE           SINE
483       chr1.6052383.6053382           MER53        DNA            DNA
484       chr1.6052383.6053382             L2a       LINE           LINE
485       chr1.6059859.6060287            <NA>       <NA>           <NA>
486       chr1.6108881.6109300            <NA>       <NA>           <NA>
487       chr1.6127608.6128081            <NA>       <NA>           <NA>
488       chr1.6143192.6143836           AluJo       SINE           SINE
489       chr1.6148348.6149046            MIRb       SINE           SINE
490       chr1.6148348.6149046          (TCC)n      Other  Simple_repeat
491       chr1.6157219.6158196          MER113        DNA            DNA
492       chr1.6161569.6162053            MIRc       SINE           SINE
493       chr1.6171480.6172136            <NA>       <NA>           <NA>
494       chr1.6179109.6179551          G-rich      Other Low_complexity
495       chr1.6185728.6186026            <NA>       <NA>           <NA>
496       chr1.6198894.6200083          G-rich      Other Low_complexity
497       chr1.6198894.6200083             L2b       LINE           LINE
498       chr1.6205000.6206457            MIR3       SINE           SINE
499       chr1.6205000.6206457           AluSz       SINE           SINE
500       chr1.6206990.6208117            MIR3       SINE           SINE
501       chr1.6206990.6208117            MIRc       SINE           SINE
502       chr1.6209210.6209547            <NA>       <NA>           <NA>
503       chr1.6220342.6220588             L2b       LINE           LINE
504       chr1.6222614.6223053            <NA>       <NA>           <NA>
505       chr1.6224709.6225570            <NA>       <NA>           <NA>
506       chr1.6233240.6233732            <NA>       <NA>           <NA>
507       chr1.6235707.6236232         (CGGC)n      Other  Simple_repeat
508       chr1.6235707.6236232         (CCCG)n      Other  Simple_repeat
509       chr1.6238721.6239018            <NA>       <NA>           <NA>
510       chr1.6245103.6245680            <NA>       <NA>           <NA>
511       chr1.6246675.6247113            <NA>       <NA>           <NA>
512       chr1.6259619.6260305            MIRc       SINE           SINE
513       chr1.6260484.6260861       (GGCTCC)n      Other  Simple_repeat
514       chr1.6260995.6262147        (CGCTC)n      Other  Simple_repeat
515       chr1.6260995.6262147         (CCGC)n      Other  Simple_repeat
516       chr1.6260995.6262147             L2c       LINE           LINE
517       chr1.6260995.6262147          (CCT)n      Other  Simple_repeat
518       chr1.6273299.6273579            <NA>       <NA>           <NA>
519       chr1.6276079.6276805            <NA>       <NA>           <NA>
520       chr1.6280748.6281203            <NA>       <NA>           <NA>
521       chr1.6290089.6290438           MLT1D        LTR            LTR
522       chr1.6290089.6290438           MLT1D        LTR            LTR
523       chr1.6293165.6293422            AluY       SINE           SINE
524       chr1.6303752.6303941            <NA>       <NA>           <NA>
525       chr1.6338940.6339622             MIR       SINE           SINE
526       chr1.6338940.6339622        (CAGCC)n      Other  Simple_repeat
527       chr1.6343267.6343859           MER5A        DNA            DNA
528       chr1.6348036.6348345           (CA)n      Other  Simple_repeat
529       chr1.6352280.6352532         (CCCT)n      Other  Simple_repeat
530       chr1.6353741.6354381             L2b       LINE           LINE
531       chr1.6358797.6360169      (CTCCCCT)n      Other  Simple_repeat
532       chr1.6363143.6363411           LTR13        LTR            LTR
533       chr1.6367745.6368153          MER52D        LTR            LTR
534       chr1.6385518.6386463           L1MC5       LINE           LINE
535       chr1.6392707.6394204          G-rich      Other Low_complexity
536       chr1.6392707.6394204          (GGC)n      Other  Simple_repeat
537       chr1.6392707.6394204        (CCGCC)n      Other  Simple_repeat
538       chr1.6392707.6394204        (CGCGC)n      Other  Simple_repeat
539       chr1.6404668.6405248            AluY       SINE           SINE
540       chr1.6404668.6405248         (AAAT)n      Other  Simple_repeat
541       chr1.6414172.6415045          AluSx4       SINE           SINE
542       chr1.6414172.6415045       (ACACAC)n      Other  Simple_repeat
543       chr1.6414172.6415045           AluJo       SINE           SINE
544       chr1.6418957.6419364          G-rich      Other Low_complexity
545       chr1.6419788.6420519            MIR3       SINE           SINE
546       chr1.6423437.6423909            <NA>       <NA>           <NA>
547       chr1.6424768.6425295        (GAGCG)n      Other  Simple_repeat
548       chr1.6429971.6430408            <NA>       <NA>           <NA>
549       chr1.6437958.6438637            MIRb       SINE           SINE
550       chr1.6437958.6438637            MIRb       SINE           SINE
551       chr1.6440326.6440881          G-rich      Other Low_complexity
552       chr1.6440326.6440881      (GCCCCCC)n      Other  Simple_repeat
553       chr1.6445013.6445495           (CA)n      Other  Simple_repeat
554       chr1.6448647.6449649          (GCC)n      Other  Simple_repeat
555       chr1.6448647.6449649            MIR3       SINE           SINE
556       chr1.6453904.6454980            <NA>       <NA>           <NA>
557       chr1.6455500.6455871            <NA>       <NA>           <NA>
558       chr1.6475346.6476025          (CTC)n      Other  Simple_repeat
559       chr1.6486279.6486919            MIRc       SINE           SINE
560       chr1.6489915.6491017            <NA>       <NA>           <NA>
561       chr1.6491517.6491869              L3       LINE           LINE
562       chr1.6497198.6497898          L1ME3A       LINE           LINE
563       chr1.6508667.6509017            MIRb       SINE           SINE
564       chr1.6509975.6510305            <NA>       <NA>           <NA>
565       chr1.6515565.6516349          AluJr4       SINE           SINE
566       chr1.6515565.6516349          L1ME4b       LINE           LINE
567       chr1.6515565.6516349          FLAM_A       SINE           SINE
568       chr1.6515565.6516349          L1ME4b       LINE           LINE
569       chr1.6517523.6517736            <NA>       <NA>           <NA>
570       chr1.6520072.6520623         OldhAT1        DNA            DNA
571       chr1.6520072.6520623          FLAM_C       SINE           SINE
572       chr1.6523529.6523887           AluSq       SINE           SINE
573       chr1.6544662.6545153            <NA>       <NA>           <NA>
574       chr1.6553643.6554743          AluSc8       SINE           SINE
575       chr1.6553643.6554743          G-rich      Other Low_complexity
576       chr1.6579482.6580797            <NA>       <NA>           <NA>
577       chr1.6600627.6604472        (GCGGC)n      Other  Simple_repeat
578       chr1.6612747.6614525          (CCG)n      Other  Simple_repeat
579       chr1.6612747.6614525       (CCGCCC)n      Other  Simple_repeat
580       chr1.6624768.6626057        (GCCCC)n      Other  Simple_repeat
581       chr1.6624768.6626057             L2a       LINE           LINE
582       chr1.6624768.6626057          L1ME3A       LINE           LINE
583       chr1.6624768.6626057           AluJo       SINE           SINE
584       chr1.6634528.6635080            <NA>       <NA>           <NA>
585       chr1.6646281.6646948           MER5B        DNA            DNA
586       chr1.6646281.6646948           AluJb       SINE           SINE
587       chr1.6656683.6657185           AluJb       SINE           SINE
588       chr1.6656683.6657185       BLACKJACK        DNA            DNA
589       chr1.6656683.6657185          MLT1H1        LTR            LTR
590       chr1.6656683.6657185          MLT1H1        LTR            LTR
591       chr1.6666804.6667023            <NA>       <NA>           <NA>
592       chr1.6672584.6673140          AluSq2       SINE           SINE
593       chr1.6674884.6675128            <NA>       <NA>           <NA>
594       chr1.6686325.6686736       Charlie1b        DNA            DNA
595       chr1.6686325.6686736           MLT1I        LTR            LTR
596       chr1.6691555.6691826         CR1_Mam       LINE           LINE
597       chr1.6700756.6702203           AluSx       SINE           SINE
598       chr1.6704228.6704468            <NA>       <NA>           <NA>
599       chr1.6719922.6720308            <NA>       <NA>           <NA>
600       chr1.6724425.6725197            MSTA        LTR            LTR
601       chr1.6724425.6725197            (T)n      Other  Simple_repeat
602       chr1.6724425.6725197          MER130        DNA            DNA
603       chr1.6727553.6727917           MER20        DNA            DNA
604       chr1.6743637.6744120            <NA>       <NA>           <NA>
605       chr1.6770655.6771281         OldhAT1        DNA            DNA
606       chr1.6784268.6785551       (GCCGGC)n      Other  Simple_repeat
607       chr1.6785895.6786654            <NA>       <NA>           <NA>
608       chr1.6793431.6793688            <NA>       <NA>           <NA>
609       chr1.6795840.6796482           AluJb       SINE           SINE
610       chr1.6800853.6801485            <NA>       <NA>           <NA>
611       chr1.6801998.6802701            <NA>       <NA>           <NA>
612       chr1.6803393.6803878       Tigger15a        DNA            DNA
613       chr1.6803393.6803878          AluJr4       SINE           SINE
614       chr1.6807692.6808108          AluSc8       SINE           SINE
615       chr1.6807692.6808108             L2b       LINE           LINE
616       chr1.6859409.6859752           AluJo       SINE           SINE
617       chr1.6860108.6860795            L1M5       LINE           LINE
618       chr1.6860108.6860795           AluSz       SINE           SINE
619       chr1.6867817.6868140           AluJo       SINE           SINE
620       chr1.6870715.6870881            <NA>       <NA>           <NA>
621       chr1.6874951.6875563            MIRb       SINE           SINE
622       chr1.6874951.6875563          AluSx3       SINE           SINE
623       chr1.6888345.6888536            <NA>       <NA>           <NA>
624       chr1.6889992.6890377            <NA>       <NA>           <NA>
625       chr1.6891885.6892457            MIRc       SINE           SINE
626       chr1.6904594.6905029           AluJo       SINE           SINE
627       chr1.6904594.6905029            (T)n      Other  Simple_repeat
628       chr1.6904594.6905029           AluJo       SINE           SINE
629       chr1.6924705.6925320            <NA>       <NA>           <NA>
630       chr1.6925805.6926158             MIR       SINE           SINE
631       chr1.6948290.6949354            MIRc       SINE           SINE
632       chr1.6948290.6949354            MIRc       SINE           SINE
633       chr1.6949922.6950631            MIRb       SINE           SINE
634       chr1.6949922.6950631           MLT1I        LTR            LTR
635       chr1.6962149.6963541        (CCTCC)n      Other  Simple_repeat
636       chr1.6962149.6963541            (C)n      Other  Simple_repeat
637       chr1.6970937.6971334            <NA>       <NA>           <NA>
638       chr1.6991351.6991786          L1ME2z       LINE           LINE
639       chr1.6991351.6991786          AluSz6       SINE           SINE
640       chr1.6998190.6998617           AluSx       SINE           SINE
641       chr1.6998190.6998617              L2       LINE           LINE
642       chr1.7013652.7014525            <NA>       <NA>           <NA>
643       chr1.7046323.7046702             L2c       LINE           LINE
644       chr1.7069945.7071056            MIRc       SINE           SINE
645       chr1.7075463.7075727          MER112        DNA            DNA
646       chr1.7075463.7075727           AluSx       SINE           SINE
647       chr1.7093378.7093689            <NA>       <NA>           <NA>
648       chr1.7117440.7118211          MER63B        DNA            DNA
649       chr1.7127572.7128067             L2c       LINE           LINE
650       chr1.7127572.7128067           MER68        LTR            LTR
651       chr1.7147956.7148494           (CA)n      Other  Simple_repeat
652       chr1.7149379.7149954            <NA>       <NA>           <NA>
653       chr1.7167294.7167547            L1M5       LINE           LINE
654       chr1.7172736.7173445          AluSq2       SINE           SINE
655       chr1.7177110.7177410            <NA>       <NA>           <NA>
656       chr1.7207782.7208352            <NA>       <NA>           <NA>
657       chr1.7265770.7266249           MER33        DNA            DNA
658       chr1.7267545.7267892            <NA>       <NA>           <NA>
659       chr1.7284979.7285428            <NA>       <NA>           <NA>
660       chr1.7299068.7299752            MIR3       SINE           SINE
661       chr1.7300966.7301277            <NA>       <NA>           <NA>
662       chr1.7334467.7334874            <NA>       <NA>           <NA>
663       chr1.7341189.7342023             MIR       SINE           SINE
664       chr1.7346779.7347379            <NA>       <NA>           <NA>
665       chr1.7363405.7363938            MIR3       SINE           SINE
666       chr1.7366832.7367215            <NA>       <NA>           <NA>
667       chr1.7369737.7370202          MER77B        LTR            LTR
668       chr1.7379515.7379918            <NA>       <NA>           <NA>
669       chr1.7388772.7390122            <NA>       <NA>           <NA>
670       chr1.7401823.7402374           L1ME1       LINE           LINE
671       chr1.7401823.7402374            MIRc       SINE           SINE
672       chr1.7438777.7439094            MIRb       SINE           SINE
673       chr1.7454199.7454463            MIRb       SINE           SINE
674       chr1.7456168.7456956         GA-rich      Other Low_complexity
675       chr1.7469372.7469502            <NA>       <NA>           <NA>
676       chr1.7470947.7472172         (CTGT)n      Other  Simple_repeat
677       chr1.7470947.7472172            MIR3       SINE           SINE
678       chr1.7478880.7479284            <NA>       <NA>           <NA>
679       chr1.7479863.7480237            <NA>       <NA>           <NA>
680       chr1.7482893.7483170            <NA>       <NA>           <NA>
681       chr1.7500713.7501069            <NA>       <NA>           <NA>
682       chr1.7505786.7506304            <NA>       <NA>           <NA>
683       chr1.7516362.7516814         Plat_L3       LINE           LINE
684       chr1.7517854.7518454            <NA>       <NA>           <NA>
685       chr1.7526394.7526950            <NA>       <NA>           <NA>
686       chr1.7528290.7528618          L1ME4a       LINE           LINE
687       chr1.7538171.7538412          MER63A        DNA            DNA
688       chr1.7538171.7538412           AluJb       SINE           SINE
689       chr1.7539588.7540093          MER91C        DNA            DNA
690       chr1.7539588.7540093             L2c       LINE           LINE
691       chr1.7549300.7550031             L2a       LINE           LINE
692       chr1.7549300.7550031             L2b       LINE           LINE
693       chr1.7557826.7558464          G-rich      Other Low_complexity
694       chr1.7561430.7561776            <NA>       <NA>           <NA>
695       chr1.7577223.7577521            <NA>       <NA>           <NA>
696       chr1.7586076.7586786            <NA>       <NA>           <NA>
697       chr1.7588201.7588602            MIRc       SINE           SINE
698       chr1.7590173.7590449            <NA>       <NA>           <NA>
699       chr1.7614248.7614910            <NA>       <NA>           <NA>
700       chr1.7616368.7616768            <NA>       <NA>           <NA>
701       chr1.7616961.7617355            <NA>       <NA>           <NA>
702       chr1.7621559.7622129            <NA>       <NA>           <NA>
703       chr1.7642091.7642585            <NA>       <NA>           <NA>
704       chr1.7645546.7645857            <NA>       <NA>           <NA>
705       chr1.7647174.7647838           AluJo       SINE           SINE
706       chr1.7667444.7668008            MIR3       SINE           SINE
707       chr1.7669446.7669914            <NA>       <NA>           <NA>
708       chr1.7672979.7673445            MIRb       SINE           SINE
709       chr1.7680008.7680865        (CCCTC)n      Other  Simple_repeat
710       chr1.7680008.7680865           (CG)n      Other  Simple_repeat
711       chr1.7680008.7680865          (CAG)n      Other  Simple_repeat
712       chr1.7695209.7695677            <NA>       <NA>           <NA>
713       chr1.7702429.7702659             L2b       LINE           LINE
714       chr1.7704512.7704924            <NA>       <NA>           <NA>
715       chr1.7719660.7719967            <NA>       <NA>           <NA>
716       chr1.7722073.7722717              L2       LINE           LINE
717       chr1.7752555.7753371            <NA>       <NA>           <NA>
718       chr1.7770872.7772383          (CGC)n      Other  Simple_repeat
719       chr1.7770872.7772383            MIRb       SINE           SINE
720       chr1.7783445.7783629            <NA>       <NA>           <NA>
721       chr1.7783798.7784438        (CCTCT)n      Other  Simple_repeat
722       chr1.7810372.7810694            <NA>       <NA>           <NA>
723       chr1.7845646.7846237             MIR       SINE           SINE
724       chr1.7845646.7846237          AluYm1       SINE           SINE
725       chr1.7902679.7903019           AluJr       SINE           SINE
726       chr1.7920538.7920897           AluJb       SINE           SINE
727       chr1.7940754.7941319            <NA>       <NA>           <NA>
728       chr1.7942252.7942710            <NA>       <NA>           <NA>
729       chr1.7953683.7954624           AluJo       SINE           SINE
730       chr1.7961156.7962151             L2a       LINE           LINE
731       chr1.7961156.7962151         (GCGT)n      Other  Simple_repeat
732       chr1.7975205.7975576            <NA>       <NA>           <NA>
733       chr1.7982191.7982708          AluSx1       SINE           SINE
734       chr1.7990106.7990678       (CATCAC)n      Other  Simple_repeat
735       chr1.7991924.7992362            <NA>       <NA>           <NA>
736       chr1.8004395.8005594            <NA>       <NA>           <NA>
737       chr1.8014629.8015458            <NA>       <NA>           <NA>
738       chr1.8020105.8020351            <NA>       <NA>           <NA>
739       chr1.8025629.8027230       (TCGCGC)n      Other  Simple_repeat
740       chr1.8025629.8027230          (CCG)n      Other  Simple_repeat
741       chr1.8032396.8032678            <NA>       <NA>           <NA>
742       chr1.8040514.8040944          LTR16A        LTR            LTR
743       chr1.8040514.8040944           L1MEd       LINE           LINE
744       chr1.8055919.8056344           AluJb       SINE           SINE
745       chr1.8055919.8056344          (TTT)n      Other  Simple_repeat
746       chr1.8055919.8056344             L2a       LINE           LINE
747       chr1.8061287.8061735             MIR       SINE           SINE
748       chr1.8062015.8062372       Charlie10        DNA            DNA
749       chr1.8062015.8062372          A-rich      Other Low_complexity
750       chr1.8062015.8062372           AluSz       SINE           SINE
751       chr1.8075541.8075907           AluSx       SINE           SINE
752       chr1.8075541.8075907         MER34C2        LTR            LTR
753       chr1.8076980.8077670          AluSx3       SINE           SINE
754       chr1.8077998.8078726             L2c       LINE           LINE
755       chr1.8083049.8084331          (TAT)n      Other  Simple_repeat
756       chr1.8090178.8090755            <NA>       <NA>           <NA>
757       chr1.8094507.8094759            <NA>       <NA>           <NA>
758       chr1.8097348.8098001           L1MC1       LINE           LINE
759       chr1.8115713.8116093      LTR104_Mam        LTR            LTR
760       chr1.8117977.8118527          AluSx3       SINE           SINE
761       chr1.8121173.8121859           AluJb       SINE           SINE
762       chr1.8133494.8134442         OldhAT1        DNA            DNA
763       chr1.8136721.8137167           AluJo       SINE           SINE
764       chr1.8136721.8137167            AluY       SINE           SINE
765       chr1.8137844.8138120        L4_C_Mam       LINE           LINE
766       chr1.8147893.8148257           LTR79        LTR            LTR
767       chr1.8147893.8148257            HAL1       LINE           LINE
768       chr1.8154674.8155061            <NA>       <NA>           <NA>
769       chr1.8155635.8155977        L4_B_Mam       LINE           LINE
770       chr1.8155635.8155977         GA-rich      Other Low_complexity
771       chr1.8155635.8155977           AluJb       SINE           SINE
772       chr1.8167220.8167798           (CA)n      Other  Simple_repeat
773       chr1.8167220.8167798          AluSx1       SINE           SINE
774       chr1.8174316.8174869           AluSz       SINE           SINE
775       chr1.8174316.8174869          L1ME3F       LINE           LINE
776       chr1.8184373.8184581          L1MC5a       LINE           LINE
777       chr1.8189581.8190297            <NA>       <NA>           <NA>
778       chr1.8197625.8198336           AluJr       SINE           SINE
779       chr1.8197625.8198336           L1MC4       LINE           LINE
780       chr1.8197625.8198336             MIR       SINE           SINE
781       chr1.8201292.8201713            <NA>       <NA>           <NA>
782       chr1.8202264.8202839              L3       LINE           LINE
783       chr1.8202264.8202839         MamRTE1       LINE           LINE
784       chr1.8211906.8212360            <NA>       <NA>           <NA>
785       chr1.8231955.8232658          MLT1N2        LTR            LTR
786       chr1.8231955.8232658         GA-rich      Other Low_complexity
787       chr1.8238212.8238539            <NA>       <NA>           <NA>
788       chr1.8239541.8240180          FLAM_C       SINE           SINE
789       chr1.8239541.8240180          AluSc8       SINE           SINE
790       chr1.8259345.8259777            <NA>       <NA>           <NA>
791       chr1.8269207.8269522           AluJb       SINE           SINE
792       chr1.8276278.8276811      ERVL-E-int        LTR            LTR
793       chr1.8276278.8276811          MLT2B4        LTR            LTR
794       chr1.8293148.8293527            L1M5       LINE           LINE
795       chr1.8303181.8303592           MER39        LTR            LTR
796       chr1.8303181.8303592          AluSx3       SINE           SINE
797       chr1.8314221.8314783            MIRb       SINE           SINE
798       chr1.8317983.8318454       (CCGAGA)n      Other  Simple_repeat
799       chr1.8323562.8324031              L3       LINE           LINE
800       chr1.8329482.8329921            <NA>       <NA>           <NA>
801       chr1.8343205.8343907            <NA>       <NA>           <NA>
802       chr1.8348914.8349361            <NA>       <NA>           <NA>
803       chr1.8351784.8352040            <NA>       <NA>           <NA>
804       chr1.8357465.8358089            <NA>       <NA>           <NA>
805       chr1.8358940.8359940       (CGCTCC)n      Other  Simple_repeat
806       chr1.8358940.8359940       (TTCTCC)n      Other  Simple_repeat
807       chr1.8367456.8368077            <NA>       <NA>           <NA>
808       chr1.8371027.8371725            <NA>       <NA>           <NA>
809       chr1.8373542.8374304            <NA>       <NA>           <NA>
810       chr1.8381910.8382315            <NA>       <NA>           <NA>
811       chr1.8395882.8397362           L1MB5       LINE           LINE
812       chr1.8395882.8397362             MIR       SINE           SINE
813       chr1.8395882.8397362            MIRb       SINE           SINE
814       chr1.8402144.8402645           AluSc       SINE           SINE
815       chr1.8402144.8402645           MLT1G        LTR            LTR
816       chr1.8402144.8402645         L1ME3Cz       LINE           LINE
817       chr1.8408042.8408435            <NA>       <NA>           <NA>
818       chr1.8409093.8409465            <NA>       <NA>           <NA>
819       chr1.8411966.8412603            <NA>       <NA>           <NA>
820       chr1.8421881.8422016            <NA>       <NA>           <NA>
821       chr1.8422725.8425337       (GGCCCC)n      Other  Simple_repeat
822       chr1.8422725.8425337             L2c       LINE           LINE
823       chr1.8438601.8439438            <NA>       <NA>           <NA>
824       chr1.8440107.8440518       Charlie4a        DNA            DNA
825       chr1.8440107.8440518          AluSc5       SINE           SINE
826       chr1.8443618.8443961        MSTA-int        LTR            LTR
827       chr1.8447781.8448153            <NA>       <NA>           <NA>
828       chr1.8448731.8449134           AluSg       SINE           SINE
829       chr1.8455662.8456783             L2c       LINE           LINE
830       chr1.8455662.8456783             L2a       LINE           LINE
831       chr1.8463170.8463927         GA-rich      Other Low_complexity
832       chr1.8464406.8464704             L2a       LINE           LINE
833       chr1.8481745.8482138              L3       LINE           LINE
834       chr1.8481745.8482138           L1MB8       LINE           LINE
835       chr1.8483031.8483405            <NA>       <NA>           <NA>
836       chr1.8492771.8493054           AluJb       SINE           SINE
837       chr1.8492771.8493054           AluJb       SINE           SINE
838       chr1.8495961.8496430           AluJr       SINE           SINE
839       chr1.8495961.8496430           AluJr       SINE           SINE
840       chr1.8506812.8507552          MER104        DNA            DNA
841       chr1.8506812.8507552           AluJb       SINE           SINE
842       chr1.8506812.8507552           AluSx       SINE           SINE
843       chr1.8510182.8510452            <NA>       <NA>           <NA>
844       chr1.8518093.8518527            <NA>       <NA>           <NA>
845       chr1.8525326.8526394            (T)n      Other  Simple_repeat
846       chr1.8542023.8542555         (CACA)n      Other  Simple_repeat
847       chr1.8542023.8542555           AluJr       SINE           SINE
848       chr1.8552816.8553506            <NA>       <NA>           <NA>
849       chr1.8556330.8556509            <NA>       <NA>           <NA>
850       chr1.8563048.8563742            <NA>       <NA>           <NA>
851       chr1.8570544.8570880       Charlie1b        DNA            DNA
852       chr1.8571376.8571866            <NA>       <NA>           <NA>
853       chr1.8580620.8580952          L1ME2z       LINE           LINE
854       chr1.8580620.8580952           AluJb       SINE           SINE
855       chr1.8590722.8591218            <NA>       <NA>           <NA>
856       chr1.8598113.8599139            <NA>       <NA>           <NA>
857       chr1.8602915.8603077             L2c       LINE           LINE
858       chr1.8625973.8627078          LTR19A        LTR            LTR
859       chr1.8629420.8629871            <NA>       <NA>           <NA>
860       chr1.8631274.8631773          AluJr4       SINE           SINE
861       chr1.8652380.8652960           THE1C        LTR            LTR
862       chr1.8652380.8652960             FAM       SINE           SINE
863       chr1.8660310.8660764       Tigger19a        DNA            DNA
864       chr1.8660310.8660764            MIRc       SINE           SINE
865       chr1.8661338.8661787             L2a       LINE           LINE
866       chr1.8668325.8668452            <NA>       <NA>           <NA>
867       chr1.8670195.8671256             L2a       LINE           LINE
868       chr1.8670195.8671256       Charlie17        DNA            DNA
869       chr1.8678664.8679905          AluSc8       SINE           SINE
870       chr1.8678664.8679905            MER3        DNA            DNA
871       chr1.8701063.8701441           (AC)n      Other  Simple_repeat
872       chr1.8702970.8703852      (GGCCGCT)n      Other  Simple_repeat
873       chr1.8706996.8707445            <NA>       <NA>           <NA>
874       chr1.8712163.8712995            <NA>       <NA>           <NA>
875       chr1.8726271.8727004           AluSg       SINE           SINE
876       chr1.8726271.8727004           AluSx       SINE           SINE
877       chr1.8740205.8740424        Tigger3b        DNA            DNA
878       chr1.8789381.8790123            <NA>       <NA>           <NA>
879       chr1.8816900.8818206            (T)n      Other  Simple_repeat
880       chr1.8816900.8818206      (CCGCCCC)n      Other  Simple_repeat
881       chr1.8822679.8823202        AmnSINE1       SINE           SINE
882       chr1.8825907.8826488           MLT1M        LTR            LTR
883       chr1.8825907.8826488          MER44A        DNA            DNA
884       chr1.8848647.8849279          AluSx1       SINE           SINE
885       chr1.8848647.8849279         (CAGC)n      Other  Simple_repeat
886       chr1.8848647.8849279         (AAAT)n      Other  Simple_repeat
887       chr1.8857907.8858607           AluSx       SINE           SINE
888       chr1.8857907.8858607     ERVL-B4-int        LTR            LTR
889       chr1.8862612.8862832            <NA>       <NA>           <NA>
890       chr1.8869128.8869555            <NA>       <NA>           <NA>
891       chr1.8871692.8872287          MER5A1        DNA            DNA
892       chr1.8873577.8873895          G-rich      Other Low_complexity
893       chr1.8877508.8879521           AluSp       SINE           SINE
894       chr1.8877508.8879521       (GCGCGG)n      Other  Simple_repeat
895       chr1.8877508.8879521       (CGCCTG)n      Other  Simple_repeat
896       chr1.8890016.8890934             Alu       SINE           SINE
897       chr1.8890016.8890934            (A)n      Other  Simple_repeat
898       chr1.8890016.8890934          MER51B        LTR            LTR
899       chr1.8890016.8890934            AluY       SINE           SINE
900       chr1.8890016.8890934           AluJb       SINE           SINE
901       chr1.8899851.8900377          AluSx1       SINE           SINE
902       chr1.8899851.8900377         MER34A1        LTR            LTR
903       chr1.8899851.8900377          MER41B        LTR            LTR
904       chr1.8899851.8900377           AluSz       SINE           SINE
905       chr1.8903953.8904388        (TCTCC)n      Other  Simple_repeat
906       chr1.8917985.8918474           AluSx       SINE           SINE
907       chr1.8937733.8938131           AluJb       SINE           SINE
908       chr1.8937733.8938131           MLT1D        LTR            LTR
909       chr1.8941771.8942357       Tigger15a        DNA            DNA
910       chr1.8941771.8942357           AluSx       SINE           SINE
911       chr1.8943491.8943820           MLT1M        LTR            LTR
912       chr1.8962784.8963178              L2       LINE           LINE
913       chr1.8986210.8986620           AluJo       SINE           SINE
914       chr1.8987817.8988444            MIR3       SINE           SINE
915       chr1.9004763.9005544         MER106B        DNA            DNA
916       chr1.9010129.9010272            <NA>       <NA>           <NA>
917       chr1.9039790.9041110      (GCCCCGA)n      Other  Simple_repeat
918       chr1.9039790.9041110            L1M5       LINE           LINE
919       chr1.9039790.9041110             L2c       LINE           LINE
920       chr1.9039790.9041110             MIR       SINE           SINE
921       chr1.9065227.9065724           LTR56        LTR            LTR
922       chr1.9065227.9065724         MamTip2        DNA            DNA
923       chr1.9065227.9065724             MIR       SINE           SINE
924       chr1.9065227.9065724           AluJo       SINE           SINE
925       chr1.9071562.9071953            <NA>       <NA>           <NA>
926       chr1.9084852.9086268          MER5A1        DNA            DNA
927       chr1.9084852.9086268           MER4E        LTR            LTR
928       chr1.9084852.9086268           LTR8B        LTR            LTR
929       chr1.9101491.9101991            <NA>       <NA>           <NA>
930       chr1.9105114.9105853             L2a       LINE           LINE
931       chr1.9110629.9111370            MIRb       SINE           SINE
932       chr1.9112795.9113308             MIR       SINE           SINE
933       chr1.9122044.9122488           L1MC4       LINE           LINE
934       chr1.9127441.9129953      (GCCCAGA)n      Other  Simple_repeat
935       chr1.9127441.9129953       (GCCCCC)n      Other  Simple_repeat
936       chr1.9142246.9142602       Charlie4a        DNA            DNA
937       chr1.9142246.9142602         (TTCC)n      Other  Simple_repeat
938       chr1.9142246.9142602           AluSz       SINE           SINE
939       chr1.9144947.9145532          MER45A        DNA            DNA
940       chr1.9149616.9150202            <NA>       <NA>           <NA>
941       chr1.9162410.9163643           AluSp       SINE           SINE
942       chr1.9180301.9180508             L2a       LINE           LINE
943       chr1.9180301.9180508             L2a       LINE           LINE
944       chr1.9180904.9181743            MIRb       SINE           SINE
945       chr1.9181938.9183634            <NA>       <NA>           <NA>
946       chr1.9192638.9193134            <NA>       <NA>           <NA>
947       chr1.9194123.9194295           AluJb       SINE           SINE
948       chr1.9196279.9197075            MIR3       SINE           SINE
949       chr1.9198502.9199034         (CGGG)n      Other  Simple_repeat
950       chr1.9201407.9202149         (CCCT)n      Other  Simple_repeat
951       chr1.9201407.9202149          (CCT)n      Other  Simple_repeat
952       chr1.9201407.9202149          (GCT)n      Other  Simple_repeat
953       chr1.9218021.9218368          MER124      Other           DNA?
954       chr1.9231658.9231863            MIRc       SINE           SINE
955       chr1.9234126.9235450             MIR       SINE           SINE
956       chr1.9234126.9235450       (CCCCGC)n      Other  Simple_repeat
957       chr1.9238291.9238729             L2a       LINE           LINE
958       chr1.9244353.9244740             MIR       SINE           SINE
959       chr1.9249509.9250291              L3       LINE           LINE
960       chr1.9250534.9250966            <NA>       <NA>           <NA>
961       chr1.9253745.9254044             MIR       SINE           SINE
962       chr1.9257606.9258245             L2b       LINE           LINE
963       chr1.9267118.9267562          AluSx1       SINE           SINE
964       chr1.9269791.9270016            <NA>       <NA>           <NA>
965       chr1.9270585.9270753            <NA>       <NA>           <NA>
966       chr1.9271424.9271749            <NA>       <NA>           <NA>
967       chr1.9275254.9276051        MIR1_Amn       SINE           SINE
968       chr1.9280439.9280883            MIRc       SINE           SINE
969       chr1.9291775.9293316      (CGCGCCC)n      Other  Simple_repeat
970       chr1.9291775.9293316        (GGGGC)n      Other  Simple_repeat
971       chr1.9291775.9293316      (CAGGCGC)n      Other  Simple_repeat
972       chr1.9291775.9293316          (GCG)n      Other  Simple_repeat
973       chr1.9293468.9294597          (CGC)n      Other  Simple_repeat
974       chr1.9293468.9294597           (GT)n      Other  Simple_repeat
975       chr1.9294939.9295230           (GT)n      Other  Simple_repeat
976       chr1.9300041.9300527     ERVL-B4-int        LTR            LTR
977       chr1.9302960.9303658        ERVL-int        LTR            LTR
978       chr1.9315528.9316008        (AAAAC)n      Other  Simple_repeat
979       chr1.9321305.9321954             L2a       LINE           LINE
980       chr1.9322899.9323223            <NA>       <NA>           <NA>
981       chr1.9349901.9350815           (AC)n      Other  Simple_repeat
982       chr1.9349901.9350815         (GTGT)n      Other  Simple_repeat
983       chr1.9363166.9363440            <NA>       <NA>           <NA>
984       chr1.9366001.9366443            <NA>       <NA>           <NA>
985       chr1.9371461.9371942            <NA>       <NA>           <NA>
986       chr1.9375742.9376311            <NA>       <NA>           <NA>
987       chr1.9376761.9377343            <NA>       <NA>           <NA>
988       chr1.9384465.9385222         (CCCT)n      Other  Simple_repeat
989       chr1.9388884.9389076            MIRb       SINE           SINE
990       chr1.9400021.9401052             L2c       LINE           LINE
991       chr1.9410766.9411304            MIRb       SINE           SINE
992       chr1.9412968.9414073             L2b       LINE           LINE
993       chr1.9428542.9429446       Tigger15a        DNA            DNA
994       chr1.9428542.9429446             L2a       LINE           LINE
995       chr1.9435226.9435511      CR1-3_Croc       LINE           LINE
996       chr1.9435226.9435511            MIR3       SINE           SINE
997       chr1.9443915.9444408            <NA>       <NA>           <NA>
998       chr1.9453426.9453868            <NA>       <NA>           <NA>
999       chr1.9455853.9456236            <NA>       <NA>           <NA>
1000      chr1.9459693.9460381          MLT1E2        LTR            LTR
1001      chr1.9473074.9473537      (CCTCCAG)n      Other  Simple_repeat
1002      chr1.9476858.9477138           L1MB5       LINE           LINE
1003      chr1.9476858.9477138           MLT1K        LTR            LTR
1004      chr1.9477638.9478064            <NA>       <NA>           <NA>
1005      chr1.9490984.9491386            FRAM       SINE           SINE
1006      chr1.9490984.9491386         AluYk11       SINE           SINE
1007      chr1.9495120.9495971         GA-rich      Other Low_complexity
1008      chr1.9495120.9495971           L1MC1       LINE           LINE
1009      chr1.9529226.9529570           AluJo       SINE           SINE
1010      chr1.9531182.9531560             MIR       SINE           SINE
1011      chr1.9531182.9531560            MIRb       SINE           SINE
1012      chr1.9531182.9531560          AluSx1       SINE           SINE
1013      chr1.9539178.9540403       (CGGCGA)n      Other  Simple_repeat
1014      chr1.9546700.9547137           MLT1L        LTR            LTR
1015      chr1.9555229.9555741            AluY       SINE           SINE
1016      chr1.9555229.9555741           AluSx       SINE           SINE
1017      chr1.9558114.9559473            MIRc       SINE           SINE
1018      chr1.9558114.9559473             L2a       LINE           LINE
1019      chr1.9558114.9559473             L2a       LINE           LINE
1020      chr1.9561524.9561783            <NA>       <NA>           <NA>
1021      chr1.9573654.9573896       Charlie4a        DNA            DNA
1022      chr1.9588430.9589673          (GCC)n      Other  Simple_repeat
1023      chr1.9588430.9589673             MIR       SINE           SINE
1024      chr1.9593464.9594195             MIR       SINE           SINE
1025      chr1.9615487.9615988           AluJb       SINE           SINE
1026      chr1.9626817.9627571           AluSx       SINE           SINE
1027      chr1.9626817.9627571            MIRb       SINE           SINE
1028      chr1.9640922.9641279             L2a       LINE           LINE
1029      chr1.9651608.9652515            <NA>       <NA>           <NA>
1030      chr1.9671409.9671745          FLAM_C       SINE           SINE
1031      chr1.9671409.9671745           AluJo       SINE           SINE
1032      chr1.9676875.9677246            <NA>       <NA>           <NA>
1033      chr1.9687212.9688546          G-rich      Other Low_complexity
1034      chr1.9687212.9688546            MIRb       SINE           SINE
1035      chr1.9689079.9689750            <NA>       <NA>           <NA>
1036      chr1.9690010.9690404            <NA>       <NA>           <NA>
1037      chr1.9700315.9700673             L2a       LINE           LINE
1038      chr1.9702343.9702572              L3       LINE           LINE
1039      chr1.9702343.9702572           AluSq       SINE           SINE
1040      chr1.9718966.9719704        (GCTGG)n      Other  Simple_repeat
1041      chr1.9718966.9719704          AluSx3       SINE           SINE
1042      chr1.9721669.9722010            <NA>       <NA>           <NA>
1043      chr1.9724792.9725423           AluSp       SINE           SINE
1044      chr1.9752844.9753580           AluSx       SINE           SINE
1045      chr1.9752844.9753580           MER1B        DNA            DNA
1046      chr1.9752844.9753580           AluSp       SINE           SINE
1047      chr1.9755462.9755980            <NA>       <NA>           <NA>
1048      chr1.9759426.9760003            AluY       SINE           SINE
1049      chr1.9759426.9760003          MER58A        DNA            DNA
1050      chr1.9766620.9767228          AluSz6       SINE           SINE
1051      chr1.9766620.9767228            MIRc       SINE           SINE
1052      chr1.9766620.9767228             L2a       LINE           LINE
1053      chr1.9766620.9767228            MIRb       SINE           SINE
1054      chr1.9792140.9792706          AluSx1       SINE           SINE
1055      chr1.9796739.9797264              L3       LINE           LINE
1056      chr1.9796739.9797264          FLAM_A       SINE           SINE
1057      chr1.9804512.9805286       Chap1_Mam        DNA            DNA
1058      chr1.9804512.9805286           AluJb       SINE           SINE
1059      chr1.9804512.9805286           AluSg       SINE           SINE
1060      chr1.9804512.9805286       Chap1_Mam        DNA            DNA
1061      chr1.9808901.9809581           AluSz       SINE           SINE
1062      chr1.9823034.9824784          G-rich      Other Low_complexity
1063      chr1.9823034.9824784          (GCC)n      Other  Simple_repeat
1064      chr1.9825254.9825957            MIRb       SINE           SINE
1065      chr1.9835507.9836425            <NA>       <NA>           <NA>
1066      chr1.9848068.9848273            <NA>       <NA>           <NA>
1067      chr1.9861272.9861615            <NA>       <NA>           <NA>
1068      chr1.9867260.9867936            <NA>       <NA>           <NA>
1069      chr1.9872827.9873052            <NA>       <NA>           <NA>
1070      chr1.9874716.9875655             L2b       LINE           LINE
1071      chr1.9876952.9877329            <NA>       <NA>           <NA>
1072      chr1.9885968.9886679             MIR       SINE           SINE
1073      chr1.9885968.9886679           MER20        DNA            DNA
1074      chr1.9885968.9886679        MIR1_Amn       SINE           SINE
1075      chr1.9890194.9890905            <NA>       <NA>           <NA>
1076      chr1.9898314.9898512          AluSc5       SINE           SINE
1077      chr1.9900253.9900949          AluSc8       SINE           SINE
1078      chr1.9904607.9904948            <NA>       <NA>           <NA>
1079      chr1.9910064.9911129        (GGGCG)n      Other  Simple_repeat
1080      chr1.9910064.9911129       (GGCGGA)n      Other  Simple_repeat
1081      chr1.9922034.9922938           AluSx       SINE           SINE
1082      chr1.9929390.9929862            MIR3       SINE           SINE
1083      chr1.9942472.9943814            <NA>       <NA>           <NA>
1084      chr1.9950286.9950821          AluSx1       SINE           SINE
1085      chr1.9950286.9950821           AluSz       SINE           SINE
1086      chr1.9960647.9961489            <NA>       <NA>           <NA>
1087      chr1.9977827.9978677           AluSx       SINE           SINE
1088      chr1.9977827.9978677          LTR67B        LTR            LTR
1089      chr1.9977827.9978677           AluSx       SINE           SINE
1090      chr1.9977827.9978677          LTR67B        LTR            LTR
1091      chr1.9977827.9978677           LTR83        LTR            LTR
1092      chr1.9996839.9998167        (CCCGC)n      Other  Simple_repeat
1093      chr1.9996839.9998167          (GGC)n      Other  Simple_repeat
1094      chr1.9996839.9998167       (AGGCGG)n      Other  Simple_repeat
1095      chr1.9996839.9998167           AluSx       SINE           SINE
1096    chr1.10006174.10006577           AluJb       SINE           SINE
1097    chr1.10006174.10006577          AluSz6       SINE           SINE
1098    chr1.10015577.10016316           AluJb       SINE           SINE
1099    chr1.10015577.10016316        (TTTCT)n      Other  Simple_repeat
1100    chr1.10015577.10016316           AluSx       SINE           SINE
1101    chr1.10031572.10031805            <NA>       <NA>           <NA>
1102    chr1.10032446.10033841          G-rich      Other Low_complexity
1103    chr1.10045089.10045717           MER1A        DNA            DNA
1104    chr1.10045089.10045717         Kanga1c        DNA            DNA
1105    chr1.10045089.10045717             L2a       LINE           LINE
1106    chr1.10046067.10046857           MLT1J        LTR            LTR
1107    chr1.10046067.10046857       MLT1J-int        LTR            LTR
1108    chr1.10046067.10046857       MLT1J-int        LTR            LTR
1109    chr1.10046067.10046857       MLT1J-int        LTR            LTR
1110    chr1.10048487.10048688             L2a       LINE           LINE
1111    chr1.10052481.10052748          MER45A        DNA            DNA
1112    chr1.10055806.10056073           AluSz       SINE           SINE
1113    chr1.10055806.10056073        (AAAAC)n      Other  Simple_repeat
1114    chr1.10057444.10057924           AluJo       SINE           SINE
1115    chr1.10057444.10057924           AluJb       SINE           SINE
1116    chr1.10064528.10064695           MLT1O        LTR            LTR
1117    chr1.10064528.10064695              L2       LINE           LINE
1118    chr1.10066780.10067303          AluSx1       SINE           SINE
1119    chr1.10074096.10075005             FAM       SINE           SINE
1120    chr1.10074096.10075005             L2a       LINE           LINE
1121    chr1.10082728.10083673           L1PA8       LINE           LINE
1122    chr1.10082728.10083673             L2a       LINE           LINE
1123    chr1.10084993.10085478          AluSx3       SINE           SINE
1124    chr1.10108148.10108997           (GT)n      Other  Simple_repeat
1125    chr1.10117804.10118389             L2a       LINE           LINE
1126    chr1.10117804.10118389             MIR       SINE           SINE
1127    chr1.10117804.10118389             MIR       SINE           SINE
1128    chr1.10117804.10118389       (TTCATT)n      Other  Simple_repeat
1129    chr1.10117804.10118389          AluSx1       SINE           SINE
1130    chr1.10123007.10123404          AluSx1       SINE           SINE
1131    chr1.10152849.10153194           LTR50        LTR            LTR
1132    chr1.10152849.10153194           LTR50        LTR            LTR
1133    chr1.10154733.10155718          AluSq2       SINE           SINE
1134    chr1.10154733.10155718          L1ME4a       LINE           LINE
1135    chr1.10154733.10155718           (GA)n      Other  Simple_repeat
1136    chr1.10154733.10155718           (GT)n      Other  Simple_repeat
1137    chr1.10154733.10155718             MIR       SINE           SINE
1138    chr1.10165230.10165645             L2a       LINE           LINE
1139    chr1.10195586.10195923           AluJo       SINE           SINE
1140    chr1.10195586.10195923           AluJb       SINE           SINE
1141    chr1.10195586.10195923           AluSc       SINE           SINE
1142    chr1.10204189.10204791          AluSq2       SINE           SINE
1143    chr1.10209805.10212197      (CACCGCC)n      Other  Simple_repeat
1144    chr1.10225669.10225934            <NA>       <NA>           <NA>
1145    chr1.10228610.10228838            <NA>       <NA>           <NA>
1146    chr1.10253509.10254193           AluJo       SINE           SINE
1147    chr1.10253509.10254193             MIR       SINE           SINE
1148    chr1.10259626.10260411          AluSx1       SINE           SINE
1149    chr1.10259626.10260411           AluJb       SINE           SINE
1150    chr1.10259626.10260411        Tigger3b        DNA            DNA
1151    chr1.10283091.10283834            AluY       SINE           SINE
1152    chr1.10286087.10286739           AluSx       SINE           SINE
1153    chr1.10289219.10289578             L2a       LINE           LINE
1154    chr1.10304137.10304650            <NA>       <NA>           <NA>
1155    chr1.10337444.10337778            <NA>       <NA>           <NA>
1156    chr1.10338031.10338308            <NA>       <NA>           <NA>
1157    chr1.10339686.10340095            <NA>       <NA>           <NA>
1158    chr1.10377284.10377859           AluSg       SINE           SINE
1159    chr1.10378318.10378842            <NA>       <NA>           <NA>
1160    chr1.10385734.10386028             L2a       LINE           LINE
1161    chr1.10385734.10386028          AluSx1       SINE           SINE
1162    chr1.10387716.10388013            <NA>       <NA>           <NA>
1163    chr1.10398462.10399999            <NA>       <NA>           <NA>
1164    chr1.10403620.10404012            <NA>       <NA>           <NA>
1165    chr1.10415310.10415675            <NA>       <NA>           <NA>
1166    chr1.10419307.10419934          AluSx3       SINE           SINE
1167    chr1.10420538.10420912            AluY       SINE           SINE
1168    chr1.10428136.10428278             MIR       SINE           SINE
1169    chr1.10430118.10431279             L2a       LINE           LINE
1170    chr1.10430118.10431279            MIRb       SINE           SINE
1171    chr1.10438435.10439220          AluSx1       SINE           SINE
1172    chr1.10444786.10445301            MIRb       SINE           SINE
1173    chr1.10444786.10445301           AluJo       SINE           SINE
1174    chr1.10450223.10450657            <NA>       <NA>           <NA>
1175    chr1.10456756.10457209          AluJr4       SINE           SINE
1176    chr1.10458997.10459542          AluSx3       SINE           SINE
1177    chr1.10471814.10472846            MIRb       SINE           SINE
1178    chr1.10474807.10475779        (GCCCC)n      Other  Simple_repeat
1179    chr1.10494594.10495781            <NA>       <NA>           <NA>
1180    chr1.10507267.10507730            <NA>       <NA>           <NA>
1181    chr1.10508680.10509172            AluY       SINE           SINE
1182    chr1.10510633.10511123             L2c       LINE           LINE
1183    chr1.10518891.10519685            <NA>       <NA>           <NA>
1184    chr1.10528163.10528957            <NA>       <NA>           <NA>
1185    chr1.10530388.10531178            <NA>       <NA>           <NA>
1186    chr1.10539212.10539988          UCON14      Other           DNA?
1187    chr1.10546889.10547218          LTR67B        LTR            LTR
1188    chr1.10546889.10547218          LTR67B        LTR            LTR
1189    chr1.10550016.10550587             L2b       LINE           LINE
1190    chr1.10550016.10550587             L2b       LINE           LINE
1191    chr1.10555802.10556635            <NA>       <NA>           <NA>
1192    chr1.10575758.10575925            L1M5       LINE           LINE
1193    chr1.10591580.10592223          L1ME4b       LINE           LINE
1194    chr1.10591580.10592223           (TG)n      Other  Simple_repeat
1195    chr1.10599235.10599833            <NA>       <NA>           <NA>
1196    chr1.10606104.10606521           MLT1J        LTR            LTR
1197    chr1.10606104.10606521          L1ME3F       LINE           LINE
1198    chr1.10612511.10613186         MamRTE1       LINE           LINE
1199    chr1.10639524.10641887        AmnSINE1       SINE           SINE
1200    chr1.10646406.10646610            <NA>       <NA>           <NA>
1201    chr1.10649030.10649676            <NA>       <NA>           <NA>
1202    chr1.10651474.10651746            <NA>       <NA>           <NA>
1203    chr1.10657176.10657647          (TAA)n      Other  Simple_repeat
1204    chr1.10662464.10663167           (AC)n      Other  Simple_repeat
1205    chr1.10663302.10664208          G-rich      Other Low_complexity
1206    chr1.10676833.10677719            <NA>       <NA>           <NA>
1207    chr1.10679527.10680000            <NA>       <NA>           <NA>
1208    chr1.10680631.10680806            <NA>       <NA>           <NA>
1209    chr1.10685713.10686557            <NA>       <NA>           <NA>
1210    chr1.10691598.10692762         (TGGA)n      Other  Simple_repeat
1211    chr1.10693957.10695473      (CGCCCGC)n      Other  Simple_repeat
1212    chr1.10693957.10695473         (GCGG)n      Other  Simple_repeat
1213    chr1.10693957.10695473       (CGGCCC)n      Other  Simple_repeat
1214    chr1.10693957.10695473          (CCG)n      Other  Simple_repeat
1215    chr1.10693957.10695473       (GCGCCC)n      Other  Simple_repeat
1216    chr1.10693957.10695473      (CCGCTGC)n      Other  Simple_repeat
1217    chr1.10700119.10700546            <NA>       <NA>           <NA>
1218    chr1.10704037.10705189            <NA>       <NA>           <NA>
1219    chr1.10705793.10706383            <NA>       <NA>           <NA>
1220    chr1.10714390.10714982             MIR       SINE           SINE
1221    chr1.10716459.10717946            (T)n      Other  Simple_repeat
1222    chr1.10716459.10717946       (CCCTGC)n      Other  Simple_repeat
1223    chr1.10720411.10720918            <NA>       <NA>           <NA>
1224    chr1.10723738.10724622            <NA>       <NA>           <NA>
1225    chr1.10731035.10731573           AluSg       SINE           SINE
1226    chr1.10731035.10731573       Charlie1a        DNA            DNA
1227    chr1.10731035.10731573           AluJb       SINE           SINE
1228    chr1.10734069.10734226            <NA>       <NA>           <NA>
1229    chr1.10735346.10735829            <NA>       <NA>           <NA>
1230    chr1.10736684.10737808             L2c       LINE           LINE
1231    chr1.10736684.10737808             L2c       LINE           LINE
1232    chr1.10744722.10745520          MER45A        DNA            DNA
1233    chr1.10745899.10746202            MIRb       SINE           SINE
1234    chr1.10745899.10746202        MIR1_Amn       SINE           SINE
1235    chr1.10755868.10756634            <NA>       <NA>           <NA>
1236    chr1.10786277.10786685            MIRb       SINE           SINE
1237    chr1.10788609.10789048            <NA>       <NA>           <NA>
1238    chr1.10793772.10795921           (GT)n      Other  Simple_repeat
1239    chr1.10793772.10795921         (CCGC)n      Other  Simple_repeat
1240    chr1.10796200.10796893         (CGCT)n      Other  Simple_repeat
1241    chr1.10803047.10803441            <NA>       <NA>           <NA>
1242    chr1.10820375.10820914            MIR3       SINE           SINE
1243    chr1.10820375.10820914          G-rich      Other Low_complexity
1244    chr1.10820375.10820914          AluSx1       SINE           SINE
1245    chr1.10824851.10825236      (GCCCCAC)n      Other  Simple_repeat
1246    chr1.10835885.10836301            <NA>       <NA>           <NA>
1247    chr1.10837261.10837664            MIR3       SINE           SINE
1248    chr1.10856919.10857278            <NA>       <NA>           <NA>
1249    chr1.10857484.10857953           (TC)n      Other  Simple_repeat
1250    chr1.10861887.10862229            <NA>       <NA>           <NA>
1251    chr1.10866506.10867556       (CCCCGC)n      Other  Simple_repeat
1252    chr1.10866506.10867556          G-rich      Other Low_complexity
1253    chr1.10880208.10880524             L2a       LINE           LINE
1254    chr1.10880208.10880524           AluJb       SINE           SINE
1255    chr1.10901485.10902119            <NA>       <NA>           <NA>
1256    chr1.10909906.10910341            MIRb       SINE           SINE
1257    chr1.10910544.10911531             MIR       SINE           SINE
1258    chr1.10910544.10911531           (CA)n      Other  Simple_repeat
1259    chr1.10941930.10942358            <NA>       <NA>           <NA>
1260    chr1.10952065.10952262             L2c       LINE           LINE
1261    chr1.10957098.10957811            <NA>       <NA>           <NA>
1262    chr1.10960938.10961489            <NA>       <NA>           <NA>
1263    chr1.10962411.10962914           AluSz       SINE           SINE
1264    chr1.10962411.10962914         MER102b        DNA            DNA
1265    chr1.10962411.10962914             MIR       SINE           SINE
1266    chr1.10962411.10962914           AluJr       SINE           SINE
1267    chr1.10975546.10976307          AluSx3       SINE           SINE
1268    chr1.10975546.10976307            MIRb       SINE           SINE
1269    chr1.10975546.10976307             MIR       SINE           SINE
1270    chr1.10980136.10980621          G-rich      Other Low_complexity
1271    chr1.11012053.11013486             MIR       SINE           SINE
1272    chr1.11012053.11013486        (GCCCC)n      Other  Simple_repeat
1273    chr1.11012053.11013486             L2c       LINE           LINE
1274    chr1.11037695.11038229            MIRb       SINE           SINE
1275    chr1.11053740.11054397            <NA>       <NA>           <NA>
1276    chr1.11059089.11060760       (CCCCAG)n      Other  Simple_repeat
1277    chr1.11059089.11060760          G-rich      Other Low_complexity
1278    chr1.11059089.11060760          G-rich      Other Low_complexity
1279    chr1.11099081.11100161      Charlie29a        DNA            DNA
1280    chr1.11099081.11100161            MIRc       SINE           SINE
1281    chr1.11134069.11134684           AluJo       SINE           SINE
1282    chr1.11135016.11135182            <NA>       <NA>           <NA>
1283    chr1.11143837.11144249           MER5B        DNA            DNA
1284    chr1.11152054.11152634              U6      Other          snRNA
1285    chr1.11158559.11159454           AluSp       SINE           SINE
1286    chr1.11176139.11176939            <NA>       <NA>           <NA>
1287    chr1.11178044.11178624          L1ME4c       LINE           LINE
1288    chr1.11187464.11188227           MER1B        DNA            DNA
1289    chr1.11189095.11189376            <NA>       <NA>           <NA>
1290    chr1.11194396.11194815       (CAAGGA)n      Other  Simple_repeat
1291    chr1.11236696.11237624          AluSx1       SINE           SINE
1292    chr1.11241428.11242164            MIRb       SINE           SINE
1293    chr1.11241428.11242164          MER91B        DNA            DNA
1294    chr1.11241428.11242164           AluSx       SINE           SINE
1295    chr1.11254574.11255110            MIRc       SINE           SINE
1296    chr1.11254574.11255110         Kanga1c        DNA            DNA
1297    chr1.11254574.11255110           AluJo       SINE           SINE
1298    chr1.11254574.11255110         Kanga1b        DNA            DNA
1299    chr1.11254574.11255110           AluSc       SINE           SINE
1300    chr1.11262074.11262931            <NA>       <NA>           <NA>
1301    chr1.11272652.11274132          MER63C        DNA            DNA
1302    chr1.11272652.11274132             L2c       LINE           LINE
1303    chr1.11272652.11274132        (CCGCC)n      Other  Simple_repeat
1304    chr1.11287053.11287231            <NA>       <NA>           <NA>
1305    chr1.11289066.11289238       CR1-8_Crp       LINE           LINE
1306    chr1.11292559.11293112           (AC)n      Other  Simple_repeat
1307    chr1.11320129.11320573            <NA>       <NA>           <NA>
1308    chr1.11321704.11322348             L2c       LINE           LINE
1309    chr1.11321704.11322348           (CT)n      Other  Simple_repeat
1310    chr1.11331503.11332009            MIRb       SINE           SINE
1311    chr1.11331503.11332009             L2a       LINE           LINE
1312    chr1.11333723.11333925            <NA>       <NA>           <NA>
1313    chr1.11337157.11337958           (AT)n      Other  Simple_repeat
1314    chr1.11337157.11337958        (TACAC)n      Other  Simple_repeat
1315    chr1.11337157.11337958           (AT)n      Other  Simple_repeat
1316    chr1.11339986.11340191            <NA>       <NA>           <NA>
1317    chr1.11373026.11374470            MIRc       SINE           SINE
1318    chr1.11373026.11374470           (TG)n      Other  Simple_repeat
1319    chr1.11374579.11375152           AluSx       SINE           SINE
1320    chr1.11375476.11376052             MIR       SINE           SINE
1321    chr1.11384288.11384483 ERV3-16A3_I-int        LTR            LTR
1322    chr1.11387423.11388007            MIRb       SINE           SINE
1323    chr1.11387423.11388007         (CTCC)n      Other  Simple_repeat
1324    chr1.11450952.11451249          MER91B        DNA            DNA
1325    chr1.11450952.11451249        MIR1_Amn       SINE           SINE
1326    chr1.11473628.11473887           AluJb       SINE           SINE
1327    chr1.11478625.11479832            <NA>       <NA>           <NA>
1328    chr1.11480004.11480724           (CA)n      Other  Simple_repeat
1329    chr1.11535739.11536173            MIR3       SINE           SINE
1330    chr1.11540333.11540671            <NA>       <NA>           <NA>
1331    chr1.11550582.11551077            <NA>       <NA>           <NA>
1332    chr1.11563441.11564219          L1ME4c       LINE           LINE
1333    chr1.11563441.11564219           AluJb       SINE           SINE
1334    chr1.11572041.11573168             MIR       SINE           SINE
1335    chr1.11572041.11573168       Ricksha_c        DNA            DNA
1336    chr1.11594141.11594623            <NA>       <NA>           <NA>
1337    chr1.11615151.11615627            MIRc       SINE           SINE
1338    chr1.11615151.11615627           AluJb       SINE           SINE
1339    chr1.11635861.11636411            AluY       SINE           SINE
1340    chr1.11642342.11642686            <NA>       <NA>           <NA>
1341    chr1.11645646.11646309           AluJr       SINE           SINE
1342    chr1.11645646.11646309              L3       LINE           LINE
1343    chr1.11645646.11646309             MIR       SINE           SINE
1344    chr1.11650481.11650936          (CCT)n      Other  Simple_repeat
1345    chr1.11653182.11654958        (CCCCG)n      Other  Simple_repeat
1346    chr1.11653182.11654958        (GCGGG)n      Other  Simple_repeat
1347    chr1.11663802.11665173          AluSz6       SINE           SINE
1348    chr1.11663802.11665173           AluJb       SINE           SINE
1349    chr1.11680398.11681872             MIR       SINE           SINE
1350    chr1.11690799.11691140           (GT)n      Other  Simple_repeat
1351    chr1.11690799.11691140        (GCCCC)n      Other  Simple_repeat
1352    chr1.11691158.11692136        (GCCCC)n      Other  Simple_repeat
1353    chr1.11702043.11702625           (CA)n      Other  Simple_repeat
1354    chr1.11707422.11708342            MIRc       SINE           SINE
1355    chr1.11707422.11708342             MIR       SINE           SINE
1356    chr1.11707422.11708342            MIR3       SINE           SINE
1357    chr1.11707422.11708342            MIRb       SINE           SINE
1358    chr1.11707422.11708342           AluSz       SINE           SINE
1359    chr1.11719286.11720243           L1MC2       LINE           LINE
1360    chr1.11719286.11720243            MIRb       SINE           SINE
1361    chr1.11729630.11730301       (GCACAT)n      Other  Simple_repeat
1362    chr1.11735651.11737279          MER31B        LTR            LTR
1363    chr1.11735651.11737279             MIR       SINE           SINE
1364    chr1.11749014.11749564           (CT)n      Other  Simple_repeat
1365    chr1.11749014.11749564            MIRc       SINE           SINE
1366    chr1.11753631.11754225              L2       LINE           LINE
1367    chr1.11753631.11754225           THE1B        LTR            LTR
1368    chr1.11761836.11762281            <NA>       <NA>           <NA>
1369    chr1.11784902.11785551            <NA>       <NA>           <NA>
1370    chr1.11787250.11787950            <NA>       <NA>           <NA>
1371    chr1.11790518.11791307           (AC)n      Other  Simple_repeat
1372    chr1.11792123.11792871             L2c       LINE           LINE
1373    chr1.11792123.11792871            MIRc       SINE           SINE
1374    chr1.11796465.11796702            <NA>       <NA>           <NA>
1375    chr1.11800837.11801034            <NA>       <NA>           <NA>
1376    chr1.11802830.11803983            <NA>       <NA>           <NA>
1377    chr1.11805169.11806733          (CTG)n      Other  Simple_repeat
1378    chr1.11821319.11821987           AluSz       SINE           SINE
1379    chr1.11821319.11821987          L1ME3E       LINE           LINE
1380    chr1.11821319.11821987          L1ME3E       LINE           LINE
1381    chr1.11822017.11822474          L1ME3E       LINE           LINE
1382    chr1.11822017.11822474         L1ME3Cz       LINE           LINE
1383    chr1.11822017.11822474           AluJb       SINE           SINE
1384    chr1.11838191.11838954            MIRb       SINE           SINE
1385    chr1.11841111.11841466            <NA>       <NA>           <NA>
1386    chr1.11842094.11842694            <NA>       <NA>           <NA>
1387    chr1.11847529.11848549            <NA>       <NA>           <NA>
1388    chr1.11856543.11857244            MIRb       SINE           SINE
1389    chr1.11856543.11857244        UCON132b        DNA            DNA
1390    chr1.11858639.11859904          (GCT)n      Other  Simple_repeat
1391    chr1.11858639.11859904           AluYc       SINE           SINE
1392    chr1.11869747.11869969            <NA>       <NA>           <NA>
1393    chr1.11874138.11874585            <NA>       <NA>           <NA>
1394    chr1.11880918.11881370             MIR       SINE           SINE
1395    chr1.11880918.11881370        (CCCCT)n      Other  Simple_repeat
1396    chr1.11882836.11883489        (CTCCT)n      Other  Simple_repeat
1397    chr1.11887215.11887571            <NA>       <NA>           <NA>
1398    chr1.11893667.11894355            MIRb       SINE           SINE
1399    chr1.11893667.11894355         (GGAT)n      Other  Simple_repeat
1400    chr1.11898810.11899496            <NA>       <NA>           <NA>
1401    chr1.11907777.11909810              U5      Other          snRNA
1402    chr1.11907777.11909810           MER1B        DNA            DNA
1403    chr1.11907777.11909810           MLT1J        LTR            LTR
1404    chr1.11907777.11909810           AluSx       SINE           SINE
1405    chr1.11907777.11909810   (GCCCCGCCGT)n      Other  Simple_repeat
1406    chr1.11907777.11909810              U5      Other          snRNA
1407    chr1.11918791.11919336            <NA>       <NA>           <NA>
1408    chr1.11925787.11926874         (CCGC)n      Other  Simple_repeat
1409    chr1.11925787.11926874         (CGCC)n      Other  Simple_repeat
1410    chr1.11925787.11926874          G-rich      Other Low_complexity
1411    chr1.11925787.11926874           (AC)n      Other  Simple_repeat
1412    chr1.11925787.11926874           AluSg       SINE           SINE
1413    chr1.11934290.11935185             MIR       SINE           SINE
1414    chr1.11934290.11935185        (GGCGG)n      Other  Simple_repeat
1415    chr1.11934290.11935185          (TGC)n      Other  Simple_repeat
1416    chr1.11934290.11935185            MIR3       SINE           SINE
1417    chr1.11934290.11935185             MIR       SINE           SINE
1418    chr1.11944178.11944871          AluSx1       SINE           SINE
1419    chr1.11944178.11944871             MIR       SINE           SINE
1420    chr1.11944178.11944871           (AC)n      Other  Simple_repeat
1421    chr1.11957147.11957472            <NA>       <NA>           <NA>
1422    chr1.11966743.11967498            <NA>       <NA>           <NA>
1423    chr1.11979632.11981016           MER33        DNA            DNA
1424    chr1.11979632.11981016             L2c       LINE           LINE
1425    chr1.11989732.11990112      Charlie15a        DNA            DNA
1426    chr1.11990456.11991507             L2c       LINE           LINE
1427    chr1.11990456.11991507             L2c       LINE           LINE
1428    chr1.11996411.11996768          AluSx1       SINE           SINE
1429    chr1.12001883.12002594          AluJr4       SINE           SINE
1430    chr1.12005392.12005924            <NA>       <NA>           <NA>
1431    chr1.12014551.12015222             L2a       LINE           LINE
1432    chr1.12014551.12015222           AluSg       SINE           SINE
1433    chr1.12019153.12020196             MIR       SINE           SINE
1434    chr1.12030835.12031987            MIRb       SINE           SINE
1435    chr1.12032039.12032470            <NA>       <NA>           <NA>
1436    chr1.12038619.12039354             MIR       SINE           SINE
1437    chr1.12040666.12040849           LTR64        LTR            LTR
1438    chr1.12046700.12047282           (AC)n      Other  Simple_repeat
1439    chr1.12051872.12052515             L2b       LINE           LINE
1440    chr1.12063217.12063533            <NA>       <NA>           <NA>
1441    chr1.12067650.12068562          AluSx1       SINE           SINE
1442    chr1.12067650.12068562         MamTip2        DNA            DNA
1443    chr1.12067650.12068562            MIR3       SINE           SINE
1444    chr1.12069578.12069999              L3       LINE           LINE
1445    chr1.12069578.12069999             L2b       LINE           LINE
1446    chr1.12075640.12076160           MLT1D        LTR            LTR
1447    chr1.12075640.12076160          LTR19A        LTR            LTR
1448    chr1.12075640.12076160           AluSp       SINE           SINE
1449    chr1.12076523.12076909            <NA>       <NA>           <NA>
1450    chr1.12079452.12079874            <NA>       <NA>           <NA>
1451    chr1.12118688.12119064          LTR41B        LTR            LTR
1452    chr1.12118688.12119064           AluSg       SINE           SINE
1453    chr1.12124730.12125430           AluSg       SINE           SINE
1454    chr1.12124730.12125430        (AAACA)n      Other  Simple_repeat
1455    chr1.12124730.12125430          MER5A1        DNA            DNA
1456    chr1.12124730.12125430             MIR       SINE           SINE
1457    chr1.12125506.12126438            <NA>       <NA>           <NA>
1458    chr1.12148286.12148621            MIRc       SINE           SINE
1459    chr1.12148286.12148621            MIRc       SINE           SINE
1460    chr1.12153437.12153711            <NA>       <NA>           <NA>
1461    chr1.12159942.12160094             L2a       LINE           LINE
1462    chr1.12161734.12162379          MER5A1        DNA            DNA
1463    chr1.12178042.12178437            MIRb       SINE           SINE
1464    chr1.12178042.12178437             MIR       SINE           SINE
1465    chr1.12184193.12184666            <NA>       <NA>           <NA>
1466    chr1.12186090.12186451             L2b       LINE           LINE
1467    chr1.12208561.12209395            FRAM       SINE           SINE
1468    chr1.12229711.12231412             L2a       LINE           LINE
1469    chr1.12243760.12244107            <NA>       <NA>           <NA>
1470    chr1.12249114.12249525            <NA>       <NA>           <NA>
1471    chr1.12272053.12272362           AluJo       SINE           SINE
1472    chr1.12272053.12272362         MamRTE1       LINE           LINE
1473    chr1.12276366.12276663            <NA>       <NA>           <NA>
1474    chr1.12279856.12280358            <NA>       <NA>           <NA>
1475    chr1.12290685.12291266            AluY       SINE           SINE
1476    chr1.12301570.12302098          MER21C        LTR            LTR
1477    chr1.12301570.12302098        Tigger3a        DNA            DNA
1478    chr1.12305330.12305797           AluJb       SINE           SINE
1479    chr1.12319983.12320391            <NA>       <NA>           <NA>
1480    chr1.12338065.12338486            <NA>       <NA>           <NA>
1481    chr1.12342400.12343003            <NA>       <NA>           <NA>
1482    chr1.12359830.12360350             L3b       LINE           LINE
1483    chr1.12376614.12376928             MIR       SINE           SINE
1484    chr1.12376614.12376928             MIR       SINE           SINE
1485    chr1.12397501.12398002             L2a       LINE           LINE
1486    chr1.12405372.12406862         MER102b        DNA            DNA
1487    chr1.12405372.12406862            MIRc       SINE           SINE
1488    chr1.12433415.12434496           (GA)n      Other  Simple_repeat
1489    chr1.12433415.12434496           (TG)n      Other  Simple_repeat
1490    chr1.12433415.12434496          (GGA)n      Other  Simple_repeat
1491    chr1.12435702.12435967             MIR       SINE           SINE
1492    chr1.12450542.12450719          MER47B        DNA            DNA
1493    chr1.12451201.12451682            <NA>       <NA>           <NA>
1494    chr1.12453836.12454936            MIR3       SINE           SINE
1495    chr1.12453836.12454936            MIRb       SINE           SINE
1496    chr1.12457065.12457382            <NA>       <NA>           <NA>
1497    chr1.12460105.12460442            <NA>       <NA>           <NA>
1498    chr1.12460813.12461485            <NA>       <NA>           <NA>
1499    chr1.12472791.12473184       MamRep434        DNA            DNA
1500    chr1.12475407.12475755            <NA>       <NA>           <NA>
1501    chr1.12477979.12478767            <NA>       <NA>           <NA>
1502    chr1.12480818.12481221            <NA>       <NA>           <NA>
1503    chr1.12486323.12487022             L2a       LINE           LINE
1504    chr1.12488761.12488965            <NA>       <NA>           <NA>
1505    chr1.12495716.12496886       (CCAGGT)n      Other  Simple_repeat
1506    chr1.12501734.12502042             L2c       LINE           LINE
1507    chr1.12505968.12506184            <NA>       <NA>           <NA>
1508    chr1.12511561.12512409            AluY       SINE           SINE
1509    chr1.12514703.12514938          L1ME3F       LINE           LINE
1510    chr1.12514703.12514938          L1ME3F       LINE           LINE
1511    chr1.12529346.12529729          L1ME4b       LINE           LINE
1512    chr1.12540006.12540788            MIRb       SINE           SINE
1513    chr1.12541120.12541430            MIRb       SINE           SINE
1514    chr1.12549864.12550320           AluJr       SINE           SINE
1515    chr1.12552953.12553717              L2       LINE           LINE
1516    chr1.12556350.12556896            MIRb       SINE           SINE
1517    chr1.12559152.12559429            <NA>       <NA>           <NA>
1518    chr1.12572310.12573324            AluY       SINE           SINE
1519    chr1.12572310.12573324       Charlie1b        DNA            DNA
1520    chr1.12572310.12573324          MER117        DNA            DNA
1521    chr1.12572310.12573324             L2b       LINE           LINE
1522    chr1.12573772.12574290            MIRc       SINE           SINE
1523    chr1.12573772.12574290           AluJb       SINE           SINE
1524    chr1.12584820.12586190           (TG)n      Other  Simple_repeat
1525    chr1.12584820.12586190            MIRb       SINE           SINE
1526    chr1.12594920.12595465             L2a       LINE           LINE
1527    chr1.12594920.12595465          G-rich      Other Low_complexity
1528    chr1.12595714.12596777            MIRb       SINE           SINE
1529    chr1.12603843.12604732       Charlie4z        DNA            DNA
1530    chr1.12603843.12604732            MIRb       SINE           SINE
1531    chr1.12615994.12616788            <NA>       <NA>           <NA>
1532    chr1.12618012.12620097         (CGCT)n      Other  Simple_repeat
1533    chr1.12618012.12620097           MER5A        DNA            DNA
1534    chr1.12636532.12636952          G-rich      Other Low_complexity
1535    chr1.12658588.12659396          MER41E        LTR            LTR
1536    chr1.12658588.12659396             L2a       LINE           LINE
1537    chr1.12658588.12659396         (TGAA)n      Other  Simple_repeat
1538    chr1.12658588.12659396             L2b       LINE           LINE
1539    chr1.12851820.12852301          LTR45B        LTR            LTR
1540    chr1.12851820.12852301           AluSg       SINE           SINE
1541    chr1.12851820.12852301          LTR45B        LTR            LTR
1542    chr1.12851820.12852301           AluSg       SINE           SINE
1543    chr1.13469425.13469972            <NA>       <NA>           <NA>
1544    chr1.13487482.13488060           (TG)n      Other  Simple_repeat
1545    chr1.13492652.13493091          AluSx1       SINE           SINE
1546    chr1.13505125.13505396            <NA>       <NA>           <NA>
1547    chr1.13512472.13512810            <NA>       <NA>           <NA>
1548    chr1.13512997.13513524            <NA>       <NA>           <NA>
1549    chr1.13517342.13517476            <NA>       <NA>           <NA>
1550    chr1.13523974.13524436           MLT1L        LTR            LTR
1551    chr1.13535339.13535844          MER63C        DNA            DNA
1552    chr1.13535339.13535844            MIR3       SINE           SINE
1553    chr1.13535339.13535844          MER31A        LTR            LTR
1554    chr1.13536609.13537063          MER21C        LTR            LTR
1555    chr1.13540206.13540364             MIR       SINE           SINE
1556    chr1.13540974.13541212            <NA>       <NA>           <NA>
1557    chr1.13543536.13544366          A-rich      Other Low_complexity
1558    chr1.13549001.13549476            MSTD        LTR            LTR
1559    chr1.13550620.13550919           L1MEd       LINE           LINE
1560    chr1.13583646.13584771            <NA>       <NA>           <NA>
1561    chr1.13587302.13587943          (GGA)n      Other  Simple_repeat
1562    chr1.13593552.13594186            <NA>       <NA>           <NA>
1563    chr1.13600931.13601634          MER31B        LTR            LTR
1564    chr1.13600931.13601634          AluSz6       SINE           SINE
1565    chr1.13617417.13618157           AluSc       SINE           SINE
1566    chr1.13619947.13620269            <NA>       <NA>           <NA>
1567    chr1.13652284.13652604           AluSg       SINE           SINE
1568    chr1.13665482.13666457          AluSx1       SINE           SINE
1569    chr1.13665482.13666457           MER81        DNA            DNA
1570    chr1.13665482.13666457            MIRb       SINE           SINE
1571    chr1.13699515.13701050              L2       LINE           LINE
1572    chr1.13699515.13701050           (GT)n      Other  Simple_repeat
1573    chr1.13725712.13726267        Charlie1        DNA            DNA
1574    chr1.13725712.13726267             MIR       SINE           SINE
1575    chr1.13725712.13726267             MIR       SINE           SINE
1576    chr1.13725712.13726267            MIRb       SINE           SINE
1577    chr1.13748724.13750074         (CCGG)n      Other  Simple_repeat
1578    chr1.13748724.13750074          (CGC)n      Other  Simple_repeat
1579    chr1.13748724.13750074         (GCCC)n      Other  Simple_repeat
1580    chr1.13757385.13758342            (T)n      Other  Simple_repeat
1581    chr1.13757385.13758342          AluSx1       SINE           SINE
1582    chr1.13764595.13765532           AluSg       SINE           SINE
1583    chr1.13783343.13783962        MIR1_Amn       SINE           SINE
1584    chr1.13792523.13792994             MIR       SINE           SINE
1585    chr1.13801020.13801527         MER103C        DNA            DNA
1586    chr1.13801020.13801527             MIR       SINE           SINE
1587    chr1.13808883.13809194           MER5B        DNA            DNA
1588    chr1.13808883.13809194             L2a       LINE           LINE
1589    chr1.13811249.13811655             L2c       LINE           LINE
1590    chr1.13813739.13813895            <NA>       <NA>           <NA>
1591    chr1.13828628.13829247        (GTGAG)n      Other  Simple_repeat
1592    chr1.13830728.13831222            <NA>       <NA>           <NA>
1593    chr1.13892325.13893448      (GCGCCGC)n      Other  Simple_repeat
1594    chr1.13960377.13960837            <NA>       <NA>           <NA>
1595    chr1.13965877.13966399          LTR80A        LTR            LTR
1596    chr1.13965877.13966399         (CTCC)n      Other  Simple_repeat
1597    chr1.14095064.14095275           MER20        DNA            DNA
1598    chr1.14095064.14095275       MamRep137        DNA            DNA
1599    chr1.14098494.14098892            <NA>       <NA>           <NA>
1600    chr1.14113776.14114377            MIRb       SINE           SINE
1601    chr1.14119259.14119921             MIR       SINE           SINE
1602    chr1.14190477.14190953           MLT1H        LTR            LTR
1603    chr1.14190477.14190953           MLT1H        LTR            LTR
1604    chr1.14214796.14215486             L2c       LINE           LINE
1605    chr1.14268086.14268327             MIR       SINE           SINE
1606    chr1.14281440.14281743            <NA>       <NA>           <NA>
1607    chr1.14296544.14297190          AluSx3       SINE           SINE
1608    chr1.14296544.14297190           (TG)n      Other  Simple_repeat
1609    chr1.14296544.14297190          MLT1H2        LTR            LTR
1610    chr1.14332280.14332581          L1ME3F       LINE           LINE
1611    chr1.14346104.14346490            <NA>       <NA>           <NA>
1612    chr1.14366189.14366610          LTR1D1        LTR            LTR
1613    chr1.14436922.14437441            MIRb       SINE           SINE
1614    chr1.14479837.14480379             L2c       LINE           LINE
1615    chr1.14492665.14493463           (CA)n      Other  Simple_repeat
1616    chr1.14492665.14493463             L2a       LINE           LINE
1617    chr1.14492665.14493463           LTR79        LTR            LTR
1618    chr1.14515230.14515572             MIR       SINE           SINE
1619    chr1.14515230.14515572             L2c       LINE           LINE
1620    chr1.14560922.14561472           MLT1M        LTR            LTR
1621    chr1.14560922.14561472           MLT1M        LTR            LTR
1622    chr1.14597723.14599720          (CTC)n      Other  Simple_repeat
1623    chr1.14597723.14599720          (CCG)n      Other  Simple_repeat
1624    chr1.14597723.14599720          (GCG)n      Other  Simple_repeat
1625    chr1.14602294.14602445            <NA>       <NA>           <NA>
1626    chr1.14605908.14607036            MIRc       SINE           SINE
1627    chr1.14605908.14607036             MIR       SINE           SINE
1628    chr1.14605908.14607036            MIRb       SINE           SINE
1629    chr1.14605908.14607036           MER20        DNA            DNA
1630    chr1.14605908.14607036             L2a       LINE           LINE
1631    chr1.14612228.14612638    tRNA-Thr-ACA      Other           tRNA
1632    chr1.14612228.14612638            MIRc       SINE           SINE
1633    chr1.14612228.14612638            MIR3       SINE           SINE
1634    chr1.14612228.14612638            MIRb       SINE           SINE
1635    chr1.14612228.14612638           MER20        DNA            DNA
1636    chr1.14617671.14618305            MIR3       SINE           SINE
1637    chr1.14627073.14628200             L2a       LINE           LINE
1638    chr1.14627073.14628200             L2b       LINE           LINE
1639    chr1.14627073.14628200           (CT)n      Other  Simple_repeat
1640    chr1.14634544.14634858            <NA>       <NA>           <NA>
1641    chr1.14649430.14649785             MIR       SINE           SINE
1642    chr1.14653712.14654119             MIR       SINE           SINE
1643    chr1.14653712.14654119             L2a       LINE           LINE
1644    chr1.14653712.14654119           MER20        DNA            DNA
1645    chr1.14653712.14654119          AluSq2       SINE           SINE
1646    chr1.14677400.14677908            <NA>       <NA>           <NA>
1647    chr1.14683055.14683409             L2b       LINE           LINE
1648    chr1.14731711.14732612             MIR       SINE           SINE
1649    chr1.14731711.14732612             MIR       SINE           SINE
1650    chr1.14731711.14732612          MER119        DNA            DNA
1651    chr1.14731711.14732612           AluSz       SINE           SINE
1652    chr1.14732908.14733703            <NA>       <NA>           <NA>
1653    chr1.14742130.14742846             L2a       LINE           LINE
1654    chr1.14742130.14742846             L2b       LINE           LINE
1655    chr1.14742130.14742846             L2a       LINE           LINE
1656    chr1.14742130.14742846         (TGAA)n      Other  Simple_repeat
1657    chr1.14782777.14783534             L2c       LINE           LINE
1658    chr1.14802585.14803093           MER20        DNA            DNA
1659    chr1.14802585.14803093            MIRc       SINE           SINE
1660    chr1.14814970.14815690            MIRb       SINE           SINE
1661    chr1.14814970.14815690            MIRb       SINE           SINE
1662    chr1.14826115.14826677             L2c       LINE           LINE
1663    chr1.14850224.14850492           AluSc       SINE           SINE
1664    chr1.14850224.14850492        Tigger9a        DNA            DNA
1665    chr1.14850224.14850492            MIRb       SINE           SINE
1666    chr1.14875702.14876609          MER63A        DNA            DNA
1667    chr1.14875702.14876609             MIR       SINE           SINE
1668    chr1.14882015.14882376          MER5A1        DNA            DNA
1669    chr1.14882015.14882376            MIRc       SINE           SINE
1670    chr1.14910112.14910514           MER20        DNA            DNA
1671    chr1.14915352.14915905            MIRb       SINE           SINE
1672    chr1.14915352.14915905            MIRb       SINE           SINE
1673    chr1.14915352.14915905             MIR       SINE           SINE
1674    chr1.14922914.14925236        MIR1_Amn       SINE           SINE
1675    chr1.14922914.14925236       (GGGGGC)n      Other  Simple_repeat
1676    chr1.14922914.14925236          G-rich      Other Low_complexity
1677    chr1.14922914.14925236          G-rich      Other Low_complexity
1678    chr1.14929504.14930255            <NA>       <NA>           <NA>
1679    chr1.14939883.14940295           MLT1M        LTR            LTR
1680    chr1.14939883.14940295              L3       LINE           LINE
1681    chr1.14942784.14943454           (GT)n      Other  Simple_repeat
1682    chr1.14945334.14946146         (CCTC)n      Other  Simple_repeat
1683    chr1.14945334.14946146             MIR       SINE           SINE
1684    chr1.14946845.14947189            <NA>       <NA>           <NA>
1685    chr1.14968510.14969306           MLT1D        LTR            LTR
1686    chr1.14980903.14981148            <NA>       <NA>           <NA>
1687    chr1.14996073.14996995             L2b       LINE           LINE
1688    chr1.14996073.14996995             L2b       LINE           LINE
1689    chr1.15021015.15021851            MIRc       SINE           SINE
1690    chr1.15021015.15021851           THE1B        LTR            LTR
1691    chr1.15027489.15028608            MIR3       SINE           SINE
1692    chr1.15027489.15028608         (TGTT)n      Other  Simple_repeat
1693    chr1.15033416.15033728           L1MB8       LINE           LINE
1694    chr1.15046373.15047093        Tigger2a        DNA            DNA
1695    chr1.15046373.15047093            MIRb       SINE           SINE
1696    chr1.15056901.15057255            MIRb       SINE           SINE
1697    chr1.15089401.15089958          MER65D        LTR            LTR
1698    chr1.15090280.15090879            MIRc       SINE           SINE
1699    chr1.15099871.15100774      (GAGCTCA)n      Other  Simple_repeat
1700    chr1.15099871.15100774            MIRb       SINE           SINE
1701    chr1.15106354.15107281            MIR3       SINE           SINE
1702    chr1.15112100.15112696            MIRb       SINE           SINE
1703    chr1.15112100.15112696           (TG)n      Other  Simple_repeat
1704    chr1.15128480.15129138           MER5B        DNA            DNA
1705    chr1.15128480.15129138           MER5A        DNA            DNA
1706    chr1.15139584.15140472           AluSx       SINE           SINE
1707    chr1.15139584.15140472       (AAAACC)n      Other  Simple_repeat
1708    chr1.15152376.15154813      (CCGCCTC)n      Other  Simple_repeat
1709    chr1.15152376.15154813           (GT)n      Other  Simple_repeat
1710    chr1.15158759.15159118          MER112        DNA            DNA
1711    chr1.15168566.15168945        X7C_LINE       LINE           LINE
1712    chr1.15168566.15168945            MIRc       SINE           SINE
1713    chr1.15178903.15179465           L1ME2       LINE           LINE
1714    chr1.15187247.15187852            <NA>       <NA>           <NA>
1715    chr1.15196836.15197532           MLT1K        LTR            LTR
1716    chr1.15200638.15200908           MLT1B        LTR            LTR
1717    chr1.15200638.15200908      UCON80_AMi      Other        Unknown
1718    chr1.15206477.15207019            MIRb       SINE           SINE
1719    chr1.15207271.15208289             L2a       LINE           LINE
1720    chr1.15214324.15214922            <NA>       <NA>           <NA>
1721    chr1.15220956.15221488            <NA>       <NA>           <NA>
1722    chr1.15226506.15227487           MER20        DNA            DNA
1723    chr1.15243332.15243831            <NA>       <NA>           <NA>
1724    chr1.15247095.15247542            <NA>       <NA>           <NA>
1725    chr1.15260412.15261709          MLT1E2        LTR            LTR
1726    chr1.15260412.15261709             MIR       SINE           SINE
1727    chr1.15272355.15272967            <NA>       <NA>           <NA>
1728    chr1.15304700.15305218       MamRep564      Other        Unknown
1729    chr1.15304700.15305218             MIR       SINE           SINE
1730    chr1.15323112.15324121           THE1A        LTR            LTR
1731    chr1.15323112.15324121            MIRc       SINE           SINE
1732    chr1.15323112.15324121             MIR       SINE           SINE
1733    chr1.15337579.15338214           MER20        DNA            DNA
1734    chr1.15337579.15338214            MIRc       SINE           SINE
1735    chr1.15337579.15338214           MLT1D        LTR            LTR
1736    chr1.15338279.15338469           MLT1D        LTR            LTR
1737    chr1.15343895.15344156            <NA>       <NA>           <NA>
1738    chr1.15352371.15352777            <NA>       <NA>           <NA>
1739    chr1.15354316.15354517              L3       LINE           LINE
1740    chr1.15356092.15356522           LTR24        LTR            LTR
1741    chr1.15356957.15357188          L1ME4a       LINE           LINE
1742    chr1.15377324.15377592           AluJb       SINE           SINE
1743    chr1.15379357.15379794         LTR5_Hs        LTR            LTR
1744    chr1.15382970.15383436           (CA)n      Other  Simple_repeat
1745    chr1.15382970.15383436            MIRb       SINE           SINE
1746    chr1.15409365.15410271          UCON78        DNA            DNA
1747    chr1.15409365.15410271           (CG)n      Other  Simple_repeat
1748    chr1.15416066.15416655            MIRc       SINE           SINE
1749    chr1.15423203.15423678            MIRb       SINE           SINE
1750    chr1.15426676.15427204         (CCCT)n      Other  Simple_repeat
1751    chr1.15431088.15431630            MIR3       SINE           SINE
1752    chr1.15431088.15431630           AluJr       SINE           SINE
1753    chr1.15444247.15444825           AluJr       SINE           SINE
1754    chr1.15463925.15464751           AluSz       SINE           SINE
1755    chr1.15463925.15464751             MIR       SINE           SINE
1756    chr1.15489455.15489662         GA-rich      Other Low_complexity
1757    chr1.15492486.15493101           MER20        DNA            DNA
1758    chr1.15501511.15501871           AluJb       SINE           SINE
1759    chr1.15502582.15502925            <NA>       <NA>           <NA>
1760    chr1.15507131.15507769             L2c       LINE           LINE
1761    chr1.15523903.15525515          G-rich      Other Low_complexity
1762    chr1.15523903.15525515       (CCCCGC)n      Other  Simple_repeat
1763    chr1.15523903.15525515        (CCGCC)n      Other  Simple_repeat
1764    chr1.15526461.15527221            MIR3       SINE           SINE
1765    chr1.15543354.15543942             L2a       LINE           LINE
1766    chr1.15543354.15543942        L2-1_AMi       LINE           LINE
1767    chr1.15568863.15569371            <NA>       <NA>           <NA>
1768    chr1.15582905.15583329          AluSx1       SINE           SINE
1769    chr1.15582905.15583329           (CA)n      Other  Simple_repeat
1770    chr1.15584583.15585349           AluJo       SINE           SINE
1771    chr1.15595087.15595526          AluSz6       SINE           SINE
1772    chr1.15595087.15595526        (AATAA)n      Other  Simple_repeat
1773    chr1.15595087.15595526           AluSg       SINE           SINE
1774    chr1.15596770.15597169          MER21C        LTR            LTR
1775    chr1.15596770.15597169           MSTB1        LTR            LTR
1776    chr1.15601629.15602057          MER5A1        DNA            DNA
1777    chr1.15601629.15602057        Tigger3a        DNA            DNA
1778    chr1.15601629.15602057           AluJo       SINE           SINE
1779    chr1.15603056.15603992           (AC)n      Other  Simple_repeat
1780    chr1.15616839.15618242             L2c       LINE           LINE
1781    chr1.15616839.15618242          G-rich      Other Low_complexity
1782    chr1.15616839.15618242         (GAGC)n      Other  Simple_repeat
1783    chr1.15616839.15618242          G-rich      Other Low_complexity
1784    chr1.15656605.15656936            <NA>       <NA>           <NA>
1785    chr1.15662577.15662819            <NA>       <NA>           <NA>
1786    chr1.15676967.15677257          LTR19B        LTR            LTR
1787    chr1.15678595.15678960            MSTA        LTR            LTR
1788    chr1.15678595.15678960           AluSz       SINE           SINE
1789    chr1.15680215.15680512              L2       LINE           LINE
1790    chr1.15680215.15680512          AluSz6       SINE           SINE
1791    chr1.15680215.15680512          AluSg4       SINE           SINE
1792    chr1.15681114.15681505          FLAM_A       SINE           SINE
1793    chr1.15684056.15684404          (GCC)n      Other  Simple_repeat
1794    chr1.15684573.15685243            <NA>       <NA>           <NA>
1795    chr1.15691359.15692071           AluJr       SINE           SINE
1796    chr1.15691359.15692071           AluJo       SINE           SINE
1797    chr1.15700415.15700790            MIR3       SINE           SINE
1798    chr1.15700415.15700790       (TCTCCC)n      Other  Simple_repeat
1799    chr1.15703218.15704175        (GCCAG)n      Other  Simple_repeat
1800    chr1.15706783.15707162             L2a       LINE           LINE
1801    chr1.15706783.15707162          MER58A        DNA            DNA
1802    chr1.15706783.15707162           AluJb       SINE           SINE
1803    chr1.15714390.15715200            <NA>       <NA>           <NA>
1804    chr1.15717374.15717904           AluJo       SINE           SINE
1805    chr1.15722891.15723101            <NA>       <NA>           <NA>
1806    chr1.15741189.15741897            <NA>       <NA>           <NA>
1807    chr1.15749451.15749896            <NA>       <NA>           <NA>
1808    chr1.15757559.15758362            MIRb       SINE           SINE
1809    chr1.15758566.15759694            MIRb       SINE           SINE
1810    chr1.15760512.15761053           AluSz       SINE           SINE
1811    chr1.15760512.15761053            (T)n      Other  Simple_repeat
1812    chr1.15760512.15761053         (CTGG)n      Other  Simple_repeat
1813    chr1.15761822.15762021            <NA>       <NA>           <NA>
1814    chr1.15765907.15766130           MER5A        DNA            DNA
1815    chr1.15765907.15766130           AluJb       SINE           SINE
1816    chr1.15772211.15772471            <NA>       <NA>           <NA>
1817    chr1.15775649.15776082          MER21A        LTR            LTR
1818    chr1.15780592.15781246           AluSc       SINE           SINE
1819    chr1.15788623.15789213           AluJo       SINE           SINE
1820    chr1.15788623.15789213          MER90a        LTR            LTR
1821    chr1.15792061.15792404           AluSx       SINE           SINE
1822    chr1.15795073.15795633          FLAM_C       SINE           SINE
1823    chr1.15795073.15795633          LTR37A        LTR            LTR
1824    chr1.15795073.15795633           AluSx       SINE           SINE
1825    chr1.15796512.15796937            MIRb       SINE           SINE
1826    chr1.15796512.15796937           L1MD3       LINE           LINE
1827    chr1.15799055.15799392            <NA>       <NA>           <NA>
1828    chr1.15800171.15800973            MIRb       SINE           SINE
1829    chr1.15800171.15800973             L2b       LINE           LINE
1830    chr1.15801105.15801377             L2b       LINE           LINE
1831    chr1.15801105.15801377             L2b       LINE           LINE
1832    chr1.15804200.15804424           AluSx       SINE           SINE
1833    chr1.15804200.15804424             L2a       LINE           LINE
1834    chr1.15815441.15815981        MIR1_Amn       SINE           SINE
1835    chr1.15815441.15815981            (T)n      Other  Simple_repeat
1836    chr1.15825405.15826155           AluSg       SINE           SINE
1837    chr1.15825405.15826155          FLAM_C       SINE           SINE
1838    chr1.15825405.15826155        L2-3_Crp       LINE           LINE
1839    chr1.15834348.15836452            (T)n      Other  Simple_repeat
1840    chr1.15834348.15836452           (GC)n      Other  Simple_repeat
1841    chr1.15847202.15848910           (CG)n      Other  Simple_repeat
1842    chr1.15847202.15848910          (GCC)n      Other  Simple_repeat
1843    chr1.15847202.15848910      (GCGTCGG)n      Other  Simple_repeat
1844    chr1.15849182.15850304            <NA>       <NA>           <NA>
1845    chr1.15860112.15860587            AluY       SINE           SINE
1846    chr1.15860112.15860587           AluJb       SINE           SINE
1847    chr1.15860112.15860587           (GT)n      Other  Simple_repeat
1848    chr1.15860112.15860587           AluJb       SINE           SINE
1849    chr1.15886163.15886804            <NA>       <NA>           <NA>
1850    chr1.15895168.15895488           AluSp       SINE           SINE
1851    chr1.15895168.15895488           L1MB3       LINE           LINE
1852    chr1.15916534.15917392           AluJb       SINE           SINE
1853    chr1.15916534.15917392           AluJb       SINE           SINE
1854    chr1.15919424.15919612            <NA>       <NA>           <NA>
1855    chr1.15923297.15923717          AluSx4       SINE           SINE
1856    chr1.15924649.15925394           AluSp       SINE           SINE
1857    chr1.15924649.15925394            MIRc       SINE           SINE
1858    chr1.15935199.15935875            <NA>       <NA>           <NA>
1859    chr1.15949166.15950180            <NA>       <NA>           <NA>
1860    chr1.15952423.15953038           MLT1H        LTR            LTR
1861    chr1.15952423.15953038           MLT1H        LTR            LTR
1862    chr1.15952423.15953038          L1ME3D       LINE           LINE
1863    chr1.15955950.15956614      Charlie23a        DNA            DNA
1864    chr1.15975037.15976296             L2c       LINE           LINE
1865    chr1.15975037.15976296             MIR       SINE           SINE
1866    chr1.15975037.15976296            MIRb       SINE           SINE
1867    chr1.15989654.15990160            <NA>       <NA>           <NA>
1868    chr1.15994485.15994945             L2c       LINE           LINE
1869    chr1.15997503.15997869             L2c       LINE           LINE
1870    chr1.15997503.15997869             MIR       SINE           SINE
1871    chr1.16009002.16009382             L2a       LINE           LINE
1872    chr1.16012567.16013729            MIRb       SINE           SINE
1873    chr1.16012567.16013729            MIR3       SINE           SINE
1874    chr1.16012567.16013729             L2b       LINE           LINE
1875    chr1.16017309.16018550        (TCCCC)n      Other  Simple_repeat
1876    chr1.16017309.16018550              L3       LINE           LINE
1877    chr1.16019566.16019882          G-rich      Other Low_complexity
1878    chr1.16026503.16027220          G-rich      Other Low_complexity
1879    chr1.16026503.16027220             MIR       SINE           SINE
1880    chr1.16032654.16033265            MIRc       SINE           SINE
1881    chr1.16038490.16038854         LTR16A1        LTR            LTR
1882    chr1.16038490.16038854           AluSx       SINE           SINE
1883    chr1.16044111.16044468         (CACA)n      Other  Simple_repeat
1884    chr1.16046857.16047358        MIR1_Amn       SINE           SINE
1885    chr1.16046857.16047358           AluJo       SINE           SINE
1886    chr1.16048572.16049086             MIR       SINE           SINE
1887    chr1.16055694.16056499            MIRc       SINE           SINE
1888    chr1.16055694.16056499            MIRc       SINE           SINE
1889    chr1.16068305.16068768            MIRc       SINE           SINE
1890    chr1.16073122.16074116          G-rich      Other Low_complexity
1891    chr1.16073122.16074116        (CGCCT)n      Other  Simple_repeat
1892    chr1.16073122.16074116          (GCC)n      Other  Simple_repeat
1893    chr1.16073122.16074116          G-rich      Other Low_complexity
1894    chr1.16073122.16074116            MIRc       SINE           SINE
1895    chr1.16076089.16076365          G-rich      Other Low_complexity
1896    chr1.16078956.16079538          MER91A        DNA            DNA
1897    chr1.16078956.16079538          MER91A        DNA            DNA
1898    chr1.16078956.16079538            MIR3       SINE           SINE
1899    chr1.16080630.16081048          MER58A        DNA            DNA
1900    chr1.16080630.16081048           AluSx       SINE           SINE
1901    chr1.16082271.16082787            MIRc       SINE           SINE
1902    chr1.16082271.16082787             L2b       LINE           LINE
1903    chr1.16088871.16089404            <NA>       <NA>           <NA>
1904    chr1.16096349.16096750             L2b       LINE           LINE
1905    chr1.16111542.16112380           AluJr       SINE           SINE
1906    chr1.16111542.16112380         (CTGT)n      Other  Simple_repeat
1907    chr1.16111542.16112380           (CA)n      Other  Simple_repeat
1908    chr1.16112965.16113444            MIRb       SINE           SINE
1909    chr1.16133057.16134435            MIRc       SINE           SINE
1910    chr1.16138568.16139816            MIRb       SINE           SINE
1911    chr1.16138568.16139816             L2a       LINE           LINE
1912    chr1.16140924.16141209          FLAM_C       SINE           SINE
1913    chr1.16143626.16144300      (CCCGCCT)n      Other  Simple_repeat
1914    chr1.16143626.16144300         (GGAG)n      Other  Simple_repeat
1915    chr1.16144922.16147144            MIRb       SINE           SINE
1916    chr1.16144922.16147144            MIRb       SINE           SINE
1917    chr1.16144922.16147144            MIR3       SINE           SINE
1918    chr1.16151217.16151686            MIR3       SINE           SINE
1919    chr1.16151217.16151686        Tigger17        DNA            DNA
1920    chr1.16152043.16152954          G-rich      Other Low_complexity
1921    chr1.16153972.16154264            <NA>       <NA>           <NA>
1922    chr1.16154804.16156396         (GCCC)n      Other  Simple_repeat
1923    chr1.16164209.16164603             L2a       LINE           LINE
1924    chr1.16164209.16164603             MIR       SINE           SINE
1925    chr1.16167387.16168328      (AGGCAGG)n      Other  Simple_repeat
1926    chr1.16167387.16168328           AluJo       SINE           SINE
1927    chr1.16167387.16168328          AluSx3       SINE           SINE
1928    chr1.16173053.16173876            MIRb       SINE           SINE
1929    chr1.16173053.16173876            MIRb       SINE           SINE
1930    chr1.16175682.16176226            <NA>       <NA>           <NA>
1931    chr1.16181632.16182452             L2a       LINE           LINE
1932    chr1.16187656.16188271       (CCCTGC)n      Other  Simple_repeat
1933    chr1.16187656.16188271          (ATG)n      Other  Simple_repeat
1934    chr1.16187656.16188271            MIRb       SINE           SINE
1935    chr1.16206265.16207237            <NA>       <NA>           <NA>
1936    chr1.16208291.16208498            MIRc       SINE           SINE
1937    chr1.16216174.16216465            <NA>       <NA>           <NA>
1938    chr1.16217067.16217833             MIR       SINE           SINE
1939    chr1.16226156.16227328              L3       LINE           LINE
1940    chr1.16226156.16227328           AluSx       SINE           SINE
1941    chr1.16236151.16237564            MIRb       SINE           SINE
1942    chr1.16236151.16237564             MIR       SINE           SINE
1943    chr1.16236151.16237564          (TTA)n      Other  Simple_repeat
1944    chr1.16236151.16237564            MIR3       SINE           SINE
1945    chr1.16244278.16244787            MIRb       SINE           SINE
1946    chr1.16248270.16249229            <NA>       <NA>           <NA>
1947    chr1.16254464.16254967         (TTTC)n      Other  Simple_repeat
1948    chr1.16260727.16261243           AluJr       SINE           SINE
1949    chr1.16266336.16267020          FLAM_A       SINE           SINE
1950    chr1.16302918.16303442           THE1D        LTR            LTR
1951    chr1.16302918.16303442          AluSz6       SINE           SINE
1952    chr1.16302918.16303442           MER20        DNA            DNA
1953    chr1.16324301.16324958           AluJo       SINE           SINE
1954    chr1.16324301.16324958           AluJb       SINE           SINE
1955    chr1.16338922.16339266          AluSq2       SINE           SINE
1956    chr1.16348959.16349104            <NA>       <NA>           <NA>
1957    chr1.16351585.16352993          (CGC)n      Other  Simple_repeat
1958    chr1.16351585.16352993           (GC)n      Other  Simple_repeat
1959    chr1.16351585.16352993            MIRb       SINE           SINE
1960    chr1.16366955.16368412            <NA>       <NA>           <NA>
1961    chr1.16375359.16376333           AluSx       SINE           SINE
1962    chr1.16386467.16386673            <NA>       <NA>           <NA>
1963    chr1.16387395.16387908            <NA>       <NA>           <NA>
1964    chr1.16396586.16396991            <NA>       <NA>           <NA>
1965    chr1.16403000.16403398           MLT1K        LTR            LTR
1966    chr1.16434613.16434961           L1MB8       LINE           LINE
1967    chr1.16434613.16434961           AluJr       SINE           SINE
1968    chr1.16440245.16441497       (AGGCAG)n      Other  Simple_repeat
1969    chr1.16451969.16452575             L2c       LINE           LINE
1970    chr1.16457751.16457996           AluJb       SINE           SINE
1971    chr1.16464918.16465503          MLT1F2        LTR            LTR
1972    chr1.16464918.16465503           AluSc       SINE           SINE
1973    chr1.16475764.16476188            <NA>       <NA>           <NA>
1974    chr1.16484178.16484563            <NA>       <NA>           <NA>
1975    chr1.16492885.16493231           AluSc       SINE           SINE
1976    chr1.16492885.16493231           AluSx       SINE           SINE
1977    chr1.16498522.16499885            MIRb       SINE           SINE
1978    chr1.16498522.16499885       (GGCCGG)n      Other  Simple_repeat
1979    chr1.16513594.16514867           LTR75        LTR            LTR
1980    chr1.16513594.16514867          MER45B        DNA            DNA
1981    chr1.16513594.16514867              U1      Other          snRNA
1982    chr1.16513594.16514867       Charlie4a        DNA            DNA
1983    chr1.16534781.16535673    tRNA-Glu-GAA      Other           tRNA
1984    chr1.16612612.16613037            <NA>       <NA>           <NA>
1985    chr1.16613216.16613995      (CCGCGCC)n      Other  Simple_repeat
1986    chr1.16613216.16613995       (CCTGCG)n      Other  Simple_repeat
1987    chr1.16620863.16621472          AluSc8       SINE           SINE
1988    chr1.16620863.16621472          MER91B        DNA            DNA
1989    chr1.16620863.16621472             MIR       SINE           SINE
1990    chr1.16625014.16625184            <NA>       <NA>           <NA>
1991    chr1.16630924.16631536            <NA>       <NA>           <NA>
1992    chr1.16643816.16645158            MER3        DNA            DNA
1993    chr1.16677999.16678357    tRNA-Gly-GGG      Other           tRNA
1994    chr1.16709613.16710091             MIR       SINE           SINE
1995    chr1.16717471.16718467            <NA>       <NA>           <NA>
1996    chr1.16718751.16719225            <NA>       <NA>           <NA>
1997    chr1.16725611.16725917    tRNA-Val-GTG      Other           tRNA
1998    chr1.16727245.16727990    tRNA-Gly-GGG      Other           tRNA
1999    chr1.16770470.16770638         MamRTE1       LINE           LINE
2000    chr1.16770470.16770638          MER63A        DNA            DNA
2001    chr1.16872257.16873103    tRNA-Glu-GAA      Other           tRNA
2002    chr1.16888911.16889906    tRNA-Asn-AAC      Other           tRNA
2003    chr1.16895437.16896963       Charlie4a        DNA            DNA
2004    chr1.16895437.16896963              U1      Other          snRNA
2005    chr1.16895437.16896963          MER45B        DNA            DNA
2006    chr1.16895437.16896963          LTR75B        LTR            LTR
2007    chr1.16903843.16904289       LTR23-int        LTR            LTR
2008    chr1.16903843.16904289          AluYc3       SINE           SINE
2009    chr1.16904487.16905563       Charlie4a        DNA            DNA
2010    chr1.16904487.16905563            LTR4        LTR            LTR
2011    chr1.16913600.16914654       (CCCCGC)n      Other  Simple_repeat
2012    chr1.16913600.16914654            MIRb       SINE           SINE
2013    chr1.16921562.16922195            <NA>       <NA>           <NA>
2014    chr1.16927259.16927839            <NA>       <NA>           <NA>
2015    chr1.16938826.16939137            <NA>       <NA>           <NA>
2016    chr1.16951579.16952034             MIR       SINE           SINE
2017    chr1.16951579.16952034          MER91B        DNA            DNA
2018    chr1.16951579.16952034           AluSg       SINE           SINE
2019    chr1.16960665.16961170       (CTGGAG)n      Other  Simple_repeat
2020    chr1.16960665.16961170       (GGCCTC)n      Other  Simple_repeat
2021    chr1.16963584.16963855             MIR       SINE           SINE
2022    chr1.16963584.16963855          AluSx3       SINE           SINE
2023    chr1.16967156.16967782            MIRb       SINE           SINE
2024    chr1.16971851.16972254           MLT1K        LTR            LTR
2025    chr1.16986778.16987395            <NA>       <NA>           <NA>
2026    chr1.17003924.17004288          AluSg4       SINE           SINE
2027    chr1.17003924.17004288             MIR       SINE           SINE
2028    chr1.17003924.17004288             MIR       SINE           SINE
2029    chr1.17011473.17012346       (CCGGCC)n      Other  Simple_repeat
2030    chr1.17011473.17012346            MIRb       SINE           SINE
2031    chr1.17011473.17012346           AluSp       SINE           SINE
2032    chr1.17022585.17022857            <NA>       <NA>           <NA>
2033    chr1.17023009.17023445            <NA>       <NA>           <NA>
2034    chr1.17053656.17054631            MIRc       SINE           SINE
2035    chr1.17053656.17054631          AluSx3       SINE           SINE
2036    chr1.17059586.17060224            MIRb       SINE           SINE
2037    chr1.17061846.17062191         (TCAT)n      Other  Simple_repeat
2038    chr1.17061846.17062191             L2c       LINE           LINE
2039    chr1.17061846.17062191           MER94        DNA            DNA
2040    chr1.17063567.17064014          AluSx1       SINE           SINE
2041    chr1.17070051.17070709            MIRb       SINE           SINE
2042    chr1.17070051.17070709             MIR       SINE           SINE
2043    chr1.17070051.17070709          AluSx1       SINE           SINE
2044    chr1.17075460.17075759           MER33        DNA            DNA
2045    chr1.17081505.17081676            <NA>       <NA>           <NA>
2046    chr1.17091015.17091187            <NA>       <NA>           <NA>
2047    chr1.17119302.17119634            <NA>       <NA>           <NA>
2048    chr1.17122325.17123066             MIR       SINE           SINE
2049    chr1.17122325.17123066            MIRb       SINE           SINE
2050    chr1.17122325.17123066             L2c       LINE           LINE
2051    chr1.17125831.17126339      (TGTCCTG)n      Other  Simple_repeat
2052    chr1.17128196.17129041           AluSx       SINE           SINE
2053    chr1.17128196.17129041          LTR24B        LTR            LTR
2054    chr1.17128196.17129041           AluJr       SINE           SINE
2055    chr1.17134078.17135122           LTR56        LTR            LTR
2056    chr1.17134078.17135122           (CA)n      Other  Simple_repeat
2057    chr1.17155334.17156213           LTR76        LTR            LTR
2058    chr1.17155334.17156213          MER51A        LTR            LTR
2059    chr1.17163060.17163527            <NA>       <NA>           <NA>
2060    chr1.17168045.17168453             MIR       SINE           SINE
2061    chr1.17182038.17182378            L1M4       LINE           LINE
2062    chr1.17189925.17190302            <NA>       <NA>           <NA>
2063    chr1.17200094.17200583         MER102c        DNA            DNA
2064    chr1.17200094.17200583          PABL_B        LTR            LTR
2065    chr1.17200094.17200583          AluSz6       SINE           SINE
2066    chr1.17207097.17207766            MIR3       SINE           SINE
2067    chr1.17207097.17207766            MIRb       SINE           SINE
2068    chr1.17208146.17208381            <NA>       <NA>           <NA>
2069    chr1.17210349.17210589            <NA>       <NA>           <NA>
2070    chr1.17212333.17213598              L3       LINE           LINE
2071    chr1.17212333.17213598            MIRc       SINE           SINE
2072    chr1.17212333.17213598           MER83        LTR            LTR
2073    chr1.17233791.17234086            MIRb       SINE           SINE
2074    chr1.17236921.17237574             L2a       LINE           LINE
2075    chr1.17236921.17237574             MIR       SINE           SINE
2076    chr1.17239465.17239897             L2c       LINE           LINE
2077    chr1.17251809.17252026             L2c       LINE           LINE
2078    chr1.17265207.17265728            MIRb       SINE           SINE
2079    chr1.17265207.17265728             L2c       LINE           LINE
2080    chr1.17274110.17274752            <NA>       <NA>           <NA>
2081    chr1.17289726.17290049            <NA>       <NA>           <NA>
2082    chr1.17335953.17336484            <NA>       <NA>           <NA>
2083    chr1.17348301.17348667            MIRb       SINE           SINE
2084    chr1.17360118.17360528          AluSx1       SINE           SINE
2085    chr1.17360118.17360528           LTR62        LTR            LTR
2086    chr1.17369569.17369806             L2a       LINE           LINE
2087    chr1.17405931.17406641    HERV-Fc2_LTR        LTR            LTR
2088    chr1.17419576.17420218            MIRb       SINE           SINE
2089    chr1.17423744.17424305            <NA>       <NA>           <NA>
2090    chr1.17426086.17426470            <NA>       <NA>           <NA>
2091    chr1.17437673.17438879      (GCCGCGG)n      Other  Simple_repeat
2092    chr1.17439034.17440183            (A)n      Other  Simple_repeat
2093    chr1.17443472.17443876             L2b       LINE           LINE
2094    chr1.17443472.17443876            MIRc       SINE           SINE
2095    chr1.17443472.17443876          MER5A1        DNA            DNA
2096    chr1.17443472.17443876           AluJb       SINE           SINE
2097    chr1.17460277.17460618            MIRb       SINE           SINE
2098    chr1.17475707.17476306           AluJb       SINE           SINE
2099    chr1.17475707.17476306           L1ME2       LINE           LINE
2100    chr1.17477287.17477886           AluSc       SINE           SINE
2101    chr1.17477287.17477886           AluSx       SINE           SINE
2102    chr1.17485350.17485788          AluSx1       SINE           SINE
2103    chr1.17485350.17485788             L2a       LINE           LINE
2104    chr1.17494089.17494710             L2a       LINE           LINE
2105    chr1.17494089.17494710             L2a       LINE           LINE
2106    chr1.17494089.17494710            MIRb       SINE           SINE
2107    chr1.17502166.17503088           AluSg       SINE           SINE
2108    chr1.17502166.17503088            MIRb       SINE           SINE
2109    chr1.17502166.17503088           MLT1H        LTR            LTR
2110    chr1.17508045.17508279            <NA>       <NA>           <NA>
2111    chr1.17516349.17516827            <NA>       <NA>           <NA>
2112    chr1.17531887.17532453            <NA>       <NA>           <NA>
2113    chr1.17538138.17539166             L2a       LINE           LINE
2114    chr1.17538138.17539166             L2a       LINE           LINE
2115    chr1.17538138.17539166             L2a       LINE           LINE
2116    chr1.17538138.17539166            MIRb       SINE           SINE
2117    chr1.17539517.17541162       (GTGGCC)n      Other  Simple_repeat
2118    chr1.17545414.17545991             L2c       LINE           LINE
2119    chr1.17545414.17545991             L2c       LINE           LINE
2120    chr1.17551058.17551488            MIRb       SINE           SINE
2121    chr1.17551058.17551488             L2b       LINE           LINE
2122    chr1.17551706.17552369            MIRc       SINE           SINE
2123    chr1.17551706.17552369          G-rich      Other Low_complexity
2124    chr1.17551706.17552369            MIRc       SINE           SINE
2125    chr1.17551706.17552369             MIR       SINE           SINE
2126    chr1.17553985.17554491            MIRb       SINE           SINE
2127    chr1.17553985.17554491            MIR3       SINE           SINE
2128    chr1.17561644.17562086        (TGCCC)n      Other  Simple_repeat
2129    chr1.17561644.17562086       (CTTTTC)n      Other  Simple_repeat
2130    chr1.17561644.17562086            MIRb       SINE           SINE
2131    chr1.17569213.17570319             L2a       LINE           LINE
2132    chr1.17581947.17582280            <NA>       <NA>           <NA>
2133    chr1.17587545.17588732            MIRb       SINE           SINE
2134    chr1.17593967.17594343             MIR       SINE           SINE
2135    chr1.17596269.17596484            <NA>       <NA>           <NA>
2136    chr1.17605530.17606328            MIRc       SINE           SINE
2137    chr1.17605530.17606328            MIRb       SINE           SINE
2138    chr1.17605530.17606328           AluSx       SINE           SINE
2139    chr1.17606786.17607222            MIRc       SINE           SINE
2140    chr1.17606786.17607222           AluJo       SINE           SINE
2141    chr1.17612067.17612313         (CATC)n      Other  Simple_repeat
2142    chr1.17612067.17612313          MER63A        DNA            DNA
2143    chr1.17612067.17612313         (CATC)n      Other  Simple_repeat
2144    chr1.17618018.17619353            MIRb       SINE           SINE
2145    chr1.17618018.17619353          (CCT)n      Other  Simple_repeat
2146    chr1.17624775.17625258            <NA>       <NA>           <NA>
2147    chr1.17633641.17633947           AluSx       SINE           SINE
2148    chr1.17653668.17654397            MIR3       SINE           SINE
2149    chr1.17653668.17654397            MIR3       SINE           SINE
2150    chr1.17661508.17662159            MIRb       SINE           SINE
2151    chr1.17661508.17662159             MIR       SINE           SINE
2152    chr1.17666015.17666407          MLT2B4        LTR            LTR
2153    chr1.17676346.17677054            <NA>       <NA>           <NA>
2154    chr1.17679297.17679768            MIRb       SINE           SINE
2155    chr1.17679297.17679768           MER81        DNA            DNA
2156    chr1.17679297.17679768            MIRb       SINE           SINE
2157    chr1.17679297.17679768            MIRb       SINE           SINE
2158    chr1.17686194.17686553             L2c       LINE           LINE
2159    chr1.17688910.17689379            MIRb       SINE           SINE
2160    chr1.17688910.17689379            MIRb       SINE           SINE
2161    chr1.17696451.17697236             L2c       LINE           LINE
2162    chr1.17701242.17701941             L2a       LINE           LINE
2163    chr1.17717841.17718283         LTR16A2        LTR            LTR
2164    chr1.17732487.17732882          MLT1H2        LTR            LTR
2165    chr1.17732487.17732882            MIR3       SINE           SINE
2166    chr1.17757515.17757831      ERVL-E-int        LTR            LTR
2167    chr1.17768582.17769234            MIRb       SINE           SINE
2168    chr1.17798119.17798427             L2c       LINE           LINE
2169    chr1.17818991.17819874           AluJb       SINE           SINE
2170    chr1.17826163.17826621          G-rich      Other Low_complexity
2171    chr1.17831678.17831893            MIRb       SINE           SINE
2172    chr1.17858051.17858442            <NA>       <NA>           <NA>
2173    chr1.17866427.17866874            MIR3       SINE           SINE
2174    chr1.17874123.17875269             MIR       SINE           SINE
2175    chr1.17874123.17875269      CR1-3_Croc       LINE           LINE
2176    chr1.17874123.17875269            MIR3       SINE           SINE
2177    chr1.17875602.17876307           MLT1K        LTR            LTR
2178    chr1.17875602.17876307          MLT1J2        LTR            LTR
2179    chr1.17891170.17891572             MIR       SINE           SINE
2180    chr1.17891170.17891572          (TGC)n      Other  Simple_repeat
2181    chr1.17891170.17891572       (TTGCTG)n      Other  Simple_repeat
2182    chr1.17891170.17891572             L2b       LINE           LINE
2183    chr1.17894304.17894535           MLT1K        LTR            LTR
2184    chr1.17909299.17909977          MER58C        DNA            DNA
2185    chr1.17909299.17909977 Helitron1Na_Mam      Other             RC
2186    chr1.17909299.17909977         LTR33A_        LTR            LTR
2187    chr1.17910551.17910912          MER113        DNA            DNA
2188    chr1.17910551.17910912          MER4A1        LTR            LTR
2189    chr1.17919443.17920339           AluJr       SINE           SINE
2190    chr1.17922899.17923082             L2a       LINE           LINE
2191    chr1.17930444.17931276            MIRb       SINE           SINE
2192    chr1.17930444.17931276             L2a       LINE           LINE
2193    chr1.17930444.17931276             L2a       LINE           LINE
2194    chr1.17955528.17956060             MIR       SINE           SINE
2195    chr1.17955528.17956060            MIR3       SINE           SINE
2196    chr1.18091867.18092442             L2b       LINE           LINE
2197    chr1.18091867.18092442             L2b       LINE           LINE
2198    chr1.18100597.18100920            <NA>       <NA>           <NA>
2199    chr1.18107931.18108705        (GAGCC)n      Other  Simple_repeat
2200    chr1.18107931.18108705          (CCG)n      Other  Simple_repeat
2201    chr1.18109910.18110628            <NA>       <NA>           <NA>
2202    chr1.18116363.18116605            MIRc       SINE           SINE
2203    chr1.18146311.18146557        MIR1_Amn       SINE           SINE
2204    chr1.18148949.18149626            <NA>       <NA>           <NA>
2205    chr1.18166390.18166806            MIRb       SINE           SINE
2206    chr1.18166390.18166806             L2c       LINE           LINE
2207    chr1.18182545.18183108         (TGAA)n      Other  Simple_repeat
2208    chr1.18217479.18217824            MIRc       SINE           SINE
2209    chr1.18234671.18235264           THE1C        LTR            LTR
2210    chr1.18234671.18235264           MER5B        DNA            DNA
2211    chr1.18234671.18235264             L2a       LINE           LINE
2212    chr1.18256267.18256735             L2c       LINE           LINE
2213    chr1.18288712.18288920            <NA>       <NA>           <NA>
2214    chr1.18290482.18291077            <NA>       <NA>           <NA>
2215    chr1.18344668.18345044            <NA>       <NA>           <NA>
2216    chr1.18373785.18374414             MIR       SINE           SINE
2217    chr1.18373785.18374414            MIRb       SINE           SINE
2218    chr1.18373785.18374414            MIRc       SINE           SINE
2219    chr1.18385165.18385830         GA-rich      Other Low_complexity
2220    chr1.18396359.18396945           MER68        LTR            LTR
2221    chr1.18422179.18422389       LTR49-int        LTR            LTR
2222    chr1.18422179.18422389          MER41B        LTR            LTR
2223    chr1.18475609.18475978           AluJo       SINE           SINE
2224    chr1.18475609.18475978          MER74A        LTR            LTR
2225    chr1.18480497.18481297            <NA>       <NA>           <NA>
2226    chr1.18557565.18558179             L2a       LINE           LINE
2227    chr1.18575546.18575993            MIR3       SINE           SINE
2228    chr1.18581320.18581827         MER113A        DNA            DNA
2229    chr1.18581320.18581827          (TAT)n      Other  Simple_repeat
2230    chr1.18581320.18581827           AluSz       SINE           SINE
2231    chr1.18584551.18585175             MIR       SINE           SINE
2232    chr1.18584551.18585175           L1ME1       LINE           LINE
2233    chr1.18597181.18597874             L2a       LINE           LINE
2234    chr1.18597181.18597874            MIRc       SINE           SINE
2235    chr1.18602821.18603099            MIRb       SINE           SINE
2236    chr1.18618382.18619165             MIR       SINE           SINE
2237    chr1.18618382.18619165          L1ME4a       LINE           LINE
2238    chr1.18630922.18631248         GA-rich      Other Low_complexity
2239    chr1.18635815.18636113           (TG)n      Other  Simple_repeat
2240    chr1.18643272.18644067            <NA>       <NA>           <NA>
2241    chr1.18655519.18655865           (GT)n      Other  Simple_repeat
2242    chr1.18681361.18681630            <NA>       <NA>           <NA>
2243    chr1.18693687.18694103            <NA>       <NA>           <NA>
2244    chr1.18703044.18703594            <NA>       <NA>           <NA>
2245    chr1.18717062.18717442          (CCG)n      Other  Simple_repeat
2246    chr1.18717062.18717442             L2b       LINE           LINE
2247    chr1.18726636.18727330             L3b       LINE           LINE
2248    chr1.18726636.18727330           (CA)n      Other  Simple_repeat
2249    chr1.18793921.18794751            MIRc       SINE           SINE
2250    chr1.18793921.18794751            MIRc       SINE           SINE
2251    chr1.18793921.18794751             MIR       SINE           SINE
2252    chr1.18806000.18806708             L2b       LINE           LINE
2253    chr1.18806000.18806708             L2b       LINE           LINE
2254    chr1.18820384.18821199           (GT)n      Other  Simple_repeat
2255    chr1.18875052.18875704            <NA>       <NA>           <NA>
2256    chr1.18882431.18882911            MIRb       SINE           SINE
2257    chr1.18882431.18882911            MIRb       SINE           SINE
2258    chr1.18884078.18884548         LTR86A1        LTR            LTR
2259    chr1.18901999.18903204            <NA>       <NA>           <NA>
2260    chr1.18909218.18909429            MIRb       SINE           SINE
2261    chr1.18912995.18913515            <NA>       <NA>           <NA>
2262    chr1.18922111.18922871             MIR       SINE           SINE
2263    chr1.18922111.18922871            MIR3       SINE           SINE
2264    chr1.18926338.18926952        (AGGCC)n      Other  Simple_repeat
2265    chr1.18937025.18937414            MIRb       SINE           SINE
2266    chr1.18938343.18939074             L2b       LINE           LINE
2267    chr1.18938343.18939074            MIR3       SINE           SINE
2268    chr1.18944989.18945722             L2c       LINE           LINE
2269    chr1.18949101.18950487             L2b       LINE           LINE
2270    chr1.18949101.18950487           (GT)n      Other  Simple_repeat
2271    chr1.18949101.18950487            MIRc       SINE           SINE
2272    chr1.18954678.18955064            <NA>       <NA>           <NA>
2273    chr1.18955353.18957359            MIRb       SINE           SINE
2274    chr1.18955353.18957359      (GGCGCCG)n      Other  Simple_repeat
2275    chr1.18955353.18957359          (GCT)n      Other  Simple_repeat
2276    chr1.18955353.18957359          (CCG)n      Other  Simple_repeat
2277    chr1.18955353.18957359      (GGCCCCG)n      Other  Simple_repeat
2278    chr1.18965145.18966284            MIRb       SINE           SINE
2279    chr1.18965145.18966284          L1ME4b       LINE           LINE
2280    chr1.19003436.19003740           L1MEc       LINE           LINE
2281    chr1.19005413.19005712        Charlie7        DNA            DNA
2282    chr1.19005413.19005712             L2c       LINE           LINE
2283    chr1.19005413.19005712           THE1B        LTR            LTR
2284    chr1.19009883.19010299            MIRb       SINE           SINE
2285    chr1.19010715.19011469          LTR88a        LTR            LTR
2286    chr1.19010715.19011469            MIRc       SINE           SINE
2287    chr1.19012161.19012563            <NA>       <NA>           <NA>
2288    chr1.19035408.19035638           MLT1C        LTR            LTR
2289    chr1.19035408.19035638          MER45A        DNA            DNA
2290    chr1.19045291.19046136            MIRb       SINE           SINE
2291    chr1.19045291.19046136             L3b       LINE           LINE
2292    chr1.19052240.19052936           AluSg       SINE           SINE
2293    chr1.19052240.19052936           L1MC4       LINE           LINE
2294    chr1.19057193.19057781           AluSx       SINE           SINE
2295    chr1.19057193.19057781             L2a       LINE           LINE
2296    chr1.19059714.19060052            <NA>       <NA>           <NA>
2297    chr1.19061625.19062074             L2b       LINE           LINE
2298    chr1.19066171.19066519           MER53        DNA            DNA
2299    chr1.19079383.19079819            <NA>       <NA>           <NA>
2300    chr1.19081163.19081968            MIRc       SINE           SINE
2301    chr1.19086385.19086696            <NA>       <NA>           <NA>
2302    chr1.19094549.19095537            MIR3       SINE           SINE
2303    chr1.19096185.19096667          (CTT)n      Other  Simple_repeat
2304    chr1.19112426.19112770            <NA>       <NA>           <NA>
2305    chr1.19113672.19114067            <NA>       <NA>           <NA>
2306    chr1.19121280.19121489            <NA>       <NA>           <NA>
2307    chr1.19122581.19122955            <NA>       <NA>           <NA>
2308    chr1.19140603.19141036            <NA>       <NA>           <NA>
2309    chr1.19151379.19152095            <NA>       <NA>           <NA>
2310    chr1.19156731.19157128            <NA>       <NA>           <NA>
2311    chr1.19169402.19170163            <NA>       <NA>           <NA>
2312    chr1.19179690.19180296           (CA)n      Other  Simple_repeat
2313    chr1.19179690.19180296          AluSz6       SINE           SINE
2314    chr1.19195683.19195942             L2c       LINE           LINE
2315    chr1.19197611.19198173           AluJb       SINE           SINE
2316    chr1.19203380.19203822           AluSx       SINE           SINE
2317    chr1.19209323.19211114          (CCG)n      Other  Simple_repeat
2318    chr1.19232397.19232711            <NA>       <NA>           <NA>
2319    chr1.19241111.19241666         MER102a        DNA            DNA
2320    chr1.19241111.19241666           AluJb       SINE           SINE
2321    chr1.19251149.19252510          MER45A        DNA            DNA
2322    chr1.19251149.19252510           AluJo       SINE           SINE
2323    chr1.19251149.19252510          AluSx1       SINE           SINE
2324    chr1.19257624.19257900            <NA>       <NA>           <NA>
2325    chr1.19260190.19261128            <NA>       <NA>           <NA>
2326    chr1.19274099.19274546            <NA>       <NA>           <NA>
2327    chr1.19288327.19289385           L1MEc       LINE           LINE
2328    chr1.19288327.19289385          FLAM_C       SINE           SINE
2329    chr1.19311124.19313252        (GGCGC)n      Other  Simple_repeat
2330    chr1.19311124.19313252            MIRb       SINE           SINE
2331    chr1.19336704.19336861           L1MCb       LINE           LINE
2332    chr1.19338412.19338657            <NA>       <NA>           <NA>
2333    chr1.19341361.19341778            <NA>       <NA>           <NA>
2334    chr1.19343083.19343853            MIRc       SINE           SINE
2335    chr1.19344468.19344778            <NA>       <NA>           <NA>
2336    chr1.19352940.19353285            <NA>       <NA>           <NA>
2337    chr1.19375719.19376161            MIRb       SINE           SINE
2338    chr1.19376562.19376772             L2b       LINE           LINE
2339    chr1.19384147.19384563         (CCCT)n      Other  Simple_repeat
2340    chr1.19384147.19384563            MIRb       SINE           SINE
2341    chr1.19398463.19398739            <NA>       <NA>           <NA>
2342    chr1.19400163.19400679            <NA>       <NA>           <NA>
2343    chr1.19429582.19430612            MIRb       SINE           SINE
2344    chr1.19436021.19436354             MIR       SINE           SINE
2345    chr1.19436021.19436354         Tigger7        DNA            DNA
2346    chr1.19440503.19440796            AluY       SINE           SINE
2347    chr1.19445898.19446210            <NA>       <NA>           <NA>
2348    chr1.19448527.19448745            <NA>       <NA>           <NA>
2349    chr1.19448802.19449552          AluSz6       SINE           SINE
2350    chr1.19450856.19451151            <NA>       <NA>           <NA>
2351    chr1.19468383.19468836        (GCAGG)n      Other  Simple_repeat
2352    chr1.19469258.19470042          MER113        DNA            DNA
2353    chr1.19469258.19470042           (AC)n      Other  Simple_repeat
2354    chr1.19469258.19470042           AluJb       SINE           SINE
2355    chr1.19479199.19479686          AluSx3       SINE           SINE
2356    chr1.19484436.19486237          (GGC)n      Other  Simple_repeat
2357    chr1.19484436.19486237        (GCGGC)n      Other  Simple_repeat
2358    chr1.19484436.19486237        (GCCCA)n      Other  Simple_repeat
2359    chr1.19484436.19486237             L2a       LINE           LINE
2360    chr1.19559478.19560121           AluSx       SINE           SINE
2361    chr1.19559478.19560121       LTR37-int        LTR            LTR
2362    chr1.19582238.19582628       Charlie4z        DNA            DNA
2363    chr1.19596374.19597766            <NA>       <NA>           <NA>
2364    chr1.19632021.19632489           L1MC4       LINE           LINE
2365    chr1.19632021.19632489           (GT)n      Other  Simple_repeat
2366    chr1.19632021.19632489           L1MC4       LINE           LINE
2367    chr1.19640454.19641134       (GGCCCA)n      Other  Simple_repeat
2368    chr1.19640454.19641134            MIRb       SINE           SINE
2369    chr1.19643948.19644333            <NA>       <NA>           <NA>
2370    chr1.19644587.19645224         (GGGA)n      Other  Simple_repeat
2371    chr1.19644587.19645224        (GGCCG)n      Other  Simple_repeat
2372    chr1.19644587.19645224           (TC)n      Other  Simple_repeat
2373    chr1.19644587.19645224       (TGTCTC)n      Other  Simple_repeat
2374    chr1.19651051.19651584            MIRb       SINE           SINE
2375    chr1.19653643.19654108            <NA>       <NA>           <NA>
2376    chr1.19659474.19660063           AluJb       SINE           SINE
2377    chr1.19659474.19660063          A-rich      Other Low_complexity
2378    chr1.19665626.19666409            <NA>       <NA>           <NA>
2379    chr1.19676361.19676744            MIRb       SINE           SINE
2380    chr1.19682348.19682597          MER91C        DNA            DNA
2381    chr1.19704350.19705079            MIR3       SINE           SINE
2382    chr1.19715451.19716043           AluJo       SINE           SINE
2383    chr1.19733858.19734752             MIR       SINE           SINE
2384    chr1.19733858.19734752          (TTA)n      Other  Simple_repeat
2385    chr1.19733858.19734752             L2a       LINE           LINE
2386    chr1.19733858.19734752             MIR       SINE           SINE
2387    chr1.19737402.19737766            <NA>       <NA>           <NA>
2388    chr1.19744451.19744942             MIR       SINE           SINE
2389    chr1.19744451.19744942             L2b       LINE           LINE
2390    chr1.19750556.19750801         (TGCC)n      Other  Simple_repeat
2391    chr1.19750556.19750801             L2c       LINE           LINE
2392    chr1.19752106.19752593            <NA>       <NA>           <NA>
2393    chr1.19758249.19758798            <NA>       <NA>           <NA>
2394    chr1.19759773.19760001             L2a       LINE           LINE
2395    chr1.19765696.19765979            <NA>       <NA>           <NA>
2396    chr1.19768382.19769022          MER5A1        DNA            DNA
2397    chr1.19768382.19769022           MLT1L        LTR            LTR
2398    chr1.19792254.19792722             L2a       LINE           LINE
2399    chr1.19792254.19792722       MamRep137        DNA            DNA
2400    chr1.19799493.19800583            MIR3       SINE           SINE
2401    chr1.19799493.19800583          G-rich      Other Low_complexity
2402    chr1.19799493.19800583       (GGAGGC)n      Other  Simple_repeat
2403    chr1.19799493.19800583        (CGGCC)n      Other  Simple_repeat
2404    chr1.19799493.19800583            MIRc       SINE           SINE
2405    chr1.19799493.19800583             L2b       LINE           LINE
2406    chr1.19814372.19814959            <NA>       <NA>           <NA>
2407    chr1.19815983.19816290            MIRb       SINE           SINE
2408    chr1.19825189.19825673              L2       LINE           LINE
2409    chr1.19860985.19861537            MIRb       SINE           SINE
2410    chr1.19866856.19867144            <NA>       <NA>           <NA>
2411    chr1.19869624.19870457           AluJr       SINE           SINE
2412    chr1.19869624.19870457         L1ME3Cz       LINE           LINE
2413    chr1.19869624.19870457           AluSx       SINE           SINE
2414    chr1.19881970.19883109            MIRb       SINE           SINE
2415    chr1.19881970.19883109          (GCG)n      Other  Simple_repeat
2416    chr1.19881970.19883109             L2b       LINE           LINE
2417    chr1.19918102.19918566           AluSp       SINE           SINE
2418    chr1.19918614.19919139           AluSp       SINE           SINE
2419    chr1.19948848.19949307         L1PREC2       LINE           LINE
2420    chr1.19948848.19949307           LTR79        LTR            LTR
2421    chr1.19974837.19975474            MIRc       SINE           SINE
2422    chr1.19974837.19975474          FLAM_C       SINE           SINE
2423    chr1.20069991.20070354            <NA>       <NA>           <NA>
2424    chr1.20100802.20101399             L2b       LINE           LINE
2425    chr1.20100802.20101399           AluJr       SINE           SINE
2426    chr1.20124331.20124959            MIRb       SINE           SINE
2427    chr1.20124331.20124959             MIR       SINE           SINE
2428    chr1.20126494.20126828            MIRb       SINE           SINE
2429    chr1.20126494.20126828             L2b       LINE           LINE
2430    chr1.20144739.20145065           MER53        DNA            DNA
2431    chr1.20144739.20145065           AluSz       SINE           SINE
2432    chr1.20152013.20152768            MIRb       SINE           SINE
2433    chr1.20164527.20165801             L2a       LINE           LINE
2434    chr1.20164527.20165801           (TG)n      Other  Simple_repeat
2435    chr1.20185790.20186700            MIR3       SINE           SINE
2436    chr1.20185790.20186700        (CCCCA)n      Other  Simple_repeat
2437    chr1.20195035.20195568              L2       LINE           LINE
2438    chr1.20212647.20213399            MIR3       SINE           SINE
2439    chr1.20212647.20213399            (A)n      Other  Simple_repeat
2440    chr1.20216740.20216916           MLT1I        LTR            LTR
2441    chr1.20265261.20265931        MamSINE1       SINE           SINE
2442    chr1.20265261.20265931           (AG)n      Other  Simple_repeat
2443    chr1.20265261.20265931            MIRb       SINE           SINE
2444    chr1.20279434.20279889             L2a       LINE           LINE
2445    chr1.20281889.20282160             L2b       LINE           LINE
2446    chr1.20290490.20291507         GA-rich      Other Low_complexity
2447    chr1.20290490.20291507           (GT)n      Other  Simple_repeat
2448    chr1.20290490.20291507           (CT)n      Other  Simple_repeat
2449    chr1.20308339.20308928            <NA>       <NA>           <NA>
2450    chr1.20342762.20343409       (CGCGAG)n      Other  Simple_repeat
2451    chr1.20358588.20359218            <NA>       <NA>           <NA>
2452    chr1.20361919.20362419            <NA>       <NA>           <NA>
2453    chr1.20366970.20367816         GA-rich      Other Low_complexity
2454    chr1.20366970.20367816             L2a       LINE           LINE
2455    chr1.20375661.20375828            <NA>       <NA>           <NA>
2456    chr1.20376847.20377283            MIRb       SINE           SINE
2457    chr1.20411177.20411671        MamSINE1       SINE           SINE
2458    chr1.20426879.20427387            MIRb       SINE           SINE
2459    chr1.20426879.20427387            MIR3       SINE           SINE
2460    chr1.20430228.20430836            MIRb       SINE           SINE
2461    chr1.20430228.20430836          G-rich      Other Low_complexity
2462    chr1.20439241.20439568         LTR16E1        LTR            LTR
2463    chr1.20439241.20439568           MLT1K        LTR            LTR
2464    chr1.20443707.20444469           (CA)n      Other  Simple_repeat
2465    chr1.20453813.20454929            MIRb       SINE           SINE
2466    chr1.20473152.20473638            <NA>       <NA>           <NA>
2467    chr1.20483861.20484761      (CCAGCCT)n      Other  Simple_repeat
2468    chr1.20485256.20485828          G-rich      Other Low_complexity
2469    chr1.20485256.20485828           (GC)n      Other  Simple_repeat
2470    chr1.20485256.20485828        (GCTGC)n      Other  Simple_repeat
2471    chr1.20486614.20486914            <NA>       <NA>           <NA>
2472    chr1.20493737.20494754          LTR88a        LTR            LTR
2473    chr1.20493737.20494754             L2a       LINE           LINE
2474    chr1.20496111.20496568             L2c       LINE           LINE
2475    chr1.20496111.20496568            MSTA        LTR            LTR
2476    chr1.20507419.20508360             L2a       LINE           LINE
2477    chr1.20522413.20522828            <NA>       <NA>           <NA>
2478    chr1.20551952.20553856        (GGGGA)n      Other  Simple_repeat
2479    chr1.20551952.20553856       (CCAGCC)n      Other  Simple_repeat
2480    chr1.20551952.20553856          (AGG)n      Other  Simple_repeat
2481    chr1.20575125.20575784             L2b       LINE           LINE
2482    chr1.20588742.20589170            <NA>       <NA>           <NA>
2483    chr1.20601533.20601791            <NA>       <NA>           <NA>
2484    chr1.20604217.20604734          MLT1A0        LTR            LTR
2485    chr1.20613540.20614275             L2c       LINE           LINE
2486    chr1.20613540.20614275         (GCAG)n      Other  Simple_repeat
2487    chr1.20613540.20614275             L2a       LINE           LINE
2488    chr1.20633096.20634938            MIR3       SINE           SINE
2489    chr1.20633096.20634938            MIRb       SINE           SINE
2490    chr1.20633096.20634938          (CGG)n      Other  Simple_repeat
2491    chr1.20633096.20634938       (GGCTCG)n      Other  Simple_repeat
2492    chr1.20633096.20634938            MIRb       SINE           SINE
2493    chr1.20633096.20634938           MLT2D        LTR            LTR
2494    chr1.20633096.20634938            MIR3       SINE           SINE
2495    chr1.20640093.20640717             L2b       LINE           LINE
2496    chr1.20640093.20640717             L2b       LINE           LINE
2497    chr1.20643387.20643850             L2a       LINE           LINE
2498    chr1.20643387.20643850             L2b       LINE           LINE
2499    chr1.20643387.20643850            MIRb       SINE           SINE
2500    chr1.20643387.20643850          MER44A        DNA            DNA
2501    chr1.20660634.20662134        MIR1_Amn       SINE           SINE
2502    chr1.20696398.20697368           AluJr       SINE           SINE
2503    chr1.20698417.20698866             L2a       LINE           LINE
2504    chr1.20698417.20698866             L2a       LINE           LINE
2505    chr1.20702498.20702866             L2c       LINE           LINE
2506    chr1.20705393.20705680            MIRb       SINE           SINE
2507    chr1.20705393.20705680           LTR64        LTR            LTR
2508    chr1.20717350.20718521          G-rich      Other Low_complexity
2509    chr1.20717350.20718521          AluSq2       SINE           SINE
2510    chr1.20724930.20725723             MIR       SINE           SINE
2511    chr1.20724930.20725723             L2b       LINE           LINE
2512    chr1.20724930.20725723             L2b       LINE           LINE
2513    chr1.20731959.20733773      (GCGCCCC)n      Other  Simple_repeat
2514    chr1.20731959.20733773            MIRb       SINE           SINE
2515    chr1.20731959.20733773           AluJo       SINE           SINE
2516    chr1.20731959.20733773           AluJb       SINE           SINE
2517    chr1.20731959.20733773           AluJb       SINE           SINE
2518    chr1.20739826.20740152           AluSx       SINE           SINE
2519    chr1.20767042.20767754          AluSx1       SINE           SINE
2520    chr1.20767042.20767754             MIR       SINE           SINE
2521    chr1.20767042.20767754            MIRb       SINE           SINE
2522    chr1.20786062.20788011       (CGCCGC)n      Other  Simple_repeat
2523    chr1.20820465.20820979          MER52C        LTR            LTR
2524    chr1.20885084.20885570           MER1B        DNA            DNA
2525    chr1.20885084.20885570            MIRb       SINE           SINE
2526    chr1.20893799.20894546           MER85        DNA            DNA
2527    chr1.20896749.20897237        Tigger3b        DNA            DNA
2528    chr1.20921387.20921734            <NA>       <NA>           <NA>
2529    chr1.20962662.20963074    Tigger2b_Pri        DNA            DNA
2530    chr1.20962662.20963074          FLAM_C       SINE           SINE
2531    chr1.20962662.20963074    Tigger2b_Pri        DNA            DNA
2532    chr1.20978293.20978722         Tigger7        DNA            DNA
2533    chr1.20978293.20978722         Tigger7        DNA            DNA
2534    chr1.20981825.20982571         (TATA)n      Other  Simple_repeat
2535    chr1.21012879.21013230           L1PBa       LINE           LINE
2536    chr1.21021280.21021622          AluSz6       SINE           SINE
2537    chr1.21021280.21021622           AluSx       SINE           SINE
2538    chr1.21022220.21022789            <NA>       <NA>           <NA>
2539    chr1.21035064.21036395          MER52D        LTR            LTR
2540    chr1.21035064.21036395          MER52D        LTR            LTR
2541    chr1.21035064.21036395          MER52D        LTR            LTR
2542    chr1.21058216.21058623         MER102c        DNA            DNA
2543    chr1.21058216.21058623           AluJb       SINE           SINE
2544    chr1.21072771.21073132             MIR       SINE           SINE
2545    chr1.21091128.21091479          AluSz6       SINE           SINE
2546    chr1.21113039.21113134            FRAM       SINE           SINE
2547    chr1.21117600.21118219            (A)n      Other  Simple_repeat
2548    chr1.21139567.21139909             FAM       SINE           SINE
2549    chr1.21149477.21150255            <NA>       <NA>           <NA>
2550    chr1.21151902.21152946           AluJb       SINE           SINE
2551    chr1.21151902.21152946       Charlie1a        DNA            DNA
2552    chr1.21151902.21152946          AluJr4       SINE           SINE
2553    chr1.21175748.21176227          (CCG)n      Other  Simple_repeat
2554    chr1.21176556.21177458          (CGC)n      Other  Simple_repeat
2555    chr1.21176556.21177458            MIRb       SINE           SINE
2556    chr1.21194876.21195602           AluJb       SINE           SINE
2557    chr1.21194876.21195602            MIRb       SINE           SINE
2558    chr1.21194876.21195602            MIRc       SINE           SINE
2559    chr1.21194876.21195602           AluJb       SINE           SINE
2560    chr1.21200689.21201227           AluJb       SINE           SINE
2561    chr1.21200689.21201227           L1MCa       LINE           LINE
2562    chr1.21200689.21201227          MLT2B4        LTR            LTR
2563    chr1.21200689.21201227           AluSp       SINE           SINE
2564    chr1.21217691.21218543            <NA>       <NA>           <NA>
2565    chr1.21225108.21225523            <NA>       <NA>           <NA>
2566    chr1.21232072.21232405           AluJr       SINE           SINE
2567    chr1.21234819.21235119          AluSz6       SINE           SINE
2568    chr1.21237666.21238299            MIRb       SINE           SINE
2569    chr1.21238499.21238719            MIRb       SINE           SINE
2570    chr1.21251918.21252513            <NA>       <NA>           <NA>
2571    chr1.21254999.21255639            <NA>       <NA>           <NA>
2572    chr1.21261651.21263078             L2b       LINE           LINE
2573    chr1.21261651.21263078             L2c       LINE           LINE
2574    chr1.21266294.21266501            <NA>       <NA>           <NA>
2575    chr1.21269510.21270466            MIRb       SINE           SINE
2576    chr1.21269510.21270466            MIRb       SINE           SINE
2577    chr1.21269510.21270466       (AGAACC)n      Other  Simple_repeat
2578    chr1.21269510.21270466            MIRb       SINE           SINE
2579    chr1.21269510.21270466            MIRc       SINE           SINE
2580    chr1.21280049.21280763             L2b       LINE           LINE
2581    chr1.21289346.21290551           MER81        DNA            DNA
2582    chr1.21289346.21290551       (GGCAGC)n      Other  Simple_repeat
2583    chr1.21289346.21290551          (GCC)n      Other  Simple_repeat
2584    chr1.21294818.21295287             MIR       SINE           SINE
2585    chr1.21294818.21295287          FLAM_C       SINE           SINE
2586    chr1.21297975.21298253           AluJo       SINE           SINE
2587    chr1.21302611.21303151            <NA>       <NA>           <NA>
2588    chr1.21303166.21303610             MIR       SINE           SINE
2589    chr1.21303166.21303610        Charlie8        DNA            DNA
2590    chr1.21308863.21309594             MIR       SINE           SINE
2591    chr1.21308863.21309594         (TGAA)n      Other  Simple_repeat
2592    chr1.21312546.21313494          AluJr4       SINE           SINE
2593    chr1.21312546.21313494             MIR       SINE           SINE
2594    chr1.21312546.21313494            MIRb       SINE           SINE
2595    chr1.21318653.21318964            <NA>       <NA>           <NA>
2596    chr1.21320525.21320833            MIRb       SINE           SINE
2597    chr1.21324201.21324999             FAM       SINE           SINE
2598    chr1.21331990.21332294            <NA>       <NA>           <NA>
2599    chr1.21332800.21333176            MIRb       SINE           SINE
2600    chr1.21334277.21334961            MIR3       SINE           SINE
2601    chr1.21334277.21334961              L2       LINE           LINE
2602    chr1.21344679.21346065      (GCTCCCG)n      Other  Simple_repeat
2603    chr1.21344679.21346065           (TG)n      Other  Simple_repeat
2604    chr1.21344679.21346065           (CG)n      Other  Simple_repeat
2605    chr1.21344679.21346065           (TG)n      Other  Simple_repeat
2606    chr1.21353891.21354056              L3       LINE           LINE
2607    chr1.21368361.21369188           AluSx       SINE           SINE
2608    chr1.21368361.21369188         (CCTT)n      Other  Simple_repeat
2609    chr1.21368361.21369188             L3b       LINE           LINE
2610    chr1.21368361.21369188             L2a       LINE           LINE
2611    chr1.21368361.21369188            MIRb       SINE           SINE
2612    chr1.21370636.21370975          AluSx1       SINE           SINE
2613    chr1.21386361.21386966           L1MC4       LINE           LINE
2614    chr1.21386361.21386966          MER41B        LTR            LTR
2615    chr1.21386361.21386966          AluSx1       SINE           SINE
2616    chr1.21386361.21386966          MER41B        LTR            LTR
2617    chr1.21386361.21386966       (CCTCTC)n      Other  Simple_repeat
2618    chr1.21439789.21440460       (GCAGGC)n      Other  Simple_repeat
2619    chr1.21439789.21440460          G-rich      Other Low_complexity
2620    chr1.21452104.21452431              L3       LINE           LINE
2621    chr1.21454003.21454244         LTR16B2        LTR            LTR
2622    chr1.21472055.21472589            MIRc       SINE           SINE
2623    chr1.21490667.21491377          LTR28C        LTR            LTR
2624    chr1.21491765.21492530            MIRb       SINE           SINE
2625    chr1.21491765.21492530             L2b       LINE           LINE
2626    chr1.21497707.21498145             MIR       SINE           SINE
2627    chr1.21503635.21504239          FLAM_A       SINE           SINE
2628    chr1.21508862.21509304       (GACAGA)n      Other  Simple_repeat
2629    chr1.21508862.21509304          G-rich      Other Low_complexity
2630    chr1.21511656.21512294            MIRc       SINE           SINE
2631    chr1.21511656.21512294            MIRb       SINE           SINE
2632    chr1.21519535.21519780           AluSz       SINE           SINE
2633    chr1.21534741.21535234            MIRb       SINE           SINE
2634    chr1.21534741.21535234             L2a       LINE           LINE
2635    chr1.21538136.21538624             MIR       SINE           SINE
2636    chr1.21538136.21538624            MIRc       SINE           SINE
2637    chr1.21541793.21542361            <NA>       <NA>           <NA>
2638    chr1.21552676.21553053          FLAM_A       SINE           SINE
2639    chr1.21552676.21553053          L1ME4a       LINE           LINE
2640    chr1.21553676.21553936             L2a       LINE           LINE
2641    chr1.21564822.21564991            MIRb       SINE           SINE
2642    chr1.21568244.21568686            <NA>       <NA>           <NA>
2643    chr1.21573914.21575111            MIRb       SINE           SINE
2644    chr1.21579829.21580199             MIR       SINE           SINE
2645    chr1.21579829.21580199           AluJr       SINE           SINE
2646    chr1.21586761.21587528             MIR       SINE           SINE
2647    chr1.21586761.21587528          G-rich      Other Low_complexity
2648    chr1.21594581.21594845             MIR       SINE           SINE
2649    chr1.21594581.21594845          G-rich      Other Low_complexity
2650    chr1.21595487.21595818            MIRb       SINE           SINE
2651    chr1.21604535.21604788             L2b       LINE           LINE
2652    chr1.21607651.21608276            <NA>       <NA>           <NA>
2653    chr1.21618885.21619673             L2b       LINE           LINE
2654    chr1.21618885.21619673       (AGAGAC)n      Other  Simple_repeat
2655    chr1.21622470.21622716        (GCCCG)n      Other  Simple_repeat
2656    chr1.21622470.21622716      (GGCTCCG)n      Other  Simple_repeat
2657    chr1.21622470.21622716        (GGCGG)n      Other  Simple_repeat
2658    chr1.21630993.21631378            MIRc       SINE           SINE
2659    chr1.21631834.21632532            MIRc       SINE           SINE
2660    chr1.21631834.21632532            MIR3       SINE           SINE
2661    chr1.21631834.21632532            MIRc       SINE           SINE
2662    chr1.21638422.21639173           AluSz       SINE           SINE
2663    chr1.21638422.21639173          L1ME4a       LINE           LINE
2664    chr1.21638422.21639173            MIRb       SINE           SINE
2665    chr1.21641974.21642717            MIRb       SINE           SINE
2666    chr1.21641974.21642717             MIR       SINE           SINE
2667    chr1.21647911.21648229            MIR3       SINE           SINE
2668    chr1.21651170.21652020           (CA)n      Other  Simple_repeat
2669    chr1.21651170.21652020      (CACACAG)n      Other  Simple_repeat
2670    chr1.21651170.21652020           (AC)n      Other  Simple_repeat
2671    chr1.21651170.21652020      (CACACAG)n      Other  Simple_repeat
2672    chr1.21651170.21652020           (CG)n      Other  Simple_repeat
2673    chr1.21651170.21652020        (CGCCC)n      Other  Simple_repeat
2674    chr1.21651170.21652020          G-rich      Other Low_complexity
2675    chr1.21655866.21656040            MIR3       SINE           SINE
2676    chr1.21659118.21660054           AluSp       SINE           SINE
2677    chr1.21659118.21660054            MIRc       SINE           SINE
2678    chr1.21659118.21660054             MIR       SINE           SINE
2679    chr1.21659118.21660054        (CTGCC)n      Other  Simple_repeat
2680    chr1.21669144.21670060          (CCG)n      Other  Simple_repeat
2681    chr1.21669144.21670060        (CCCCG)n      Other  Simple_repeat
2682    chr1.21669144.21670060            MIR3       SINE           SINE
2683    chr1.21669144.21670060            MIRc       SINE           SINE
2684    chr1.21703343.21703979          AluJr4       SINE           SINE
2685    chr1.21706616.21706811            <NA>       <NA>           <NA>
2686    chr1.21725824.21726303            <NA>       <NA>           <NA>
2687    chr1.21742623.21742928            <NA>       <NA>           <NA>
2688    chr1.21764694.21765304          AluSg7       SINE           SINE
2689    chr1.21764694.21765304          MER21B        LTR            LTR
2690    chr1.21782230.21784104          (CCG)n      Other  Simple_repeat
2691    chr1.21782230.21784104        MIR1_Amn       SINE           SINE
2692    chr1.21782230.21784104           AluSp       SINE           SINE
2693    chr1.21791763.21791971          MER41B        LTR            LTR
2694    chr1.21791763.21791971            AluY       SINE           SINE
2695    chr1.21804549.21804984             MIR       SINE           SINE
2696    chr1.21804549.21804984            MIRb       SINE           SINE
2697    chr1.21804549.21804984           AluSx       SINE           SINE
2698    chr1.21804549.21804984        (AAAAC)n      Other  Simple_repeat
2699    chr1.21814369.21815575             MIR       SINE           SINE
2700    chr1.21814369.21815575          FLAM_C       SINE           SINE
2701    chr1.21816734.21817219             L2a       LINE           LINE
2702    chr1.21822182.21822806          G-rich      Other Low_complexity
2703    chr1.21823305.21823900            <NA>       <NA>           <NA>
2704    chr1.21828849.21829543            MIRc       SINE           SINE
2705    chr1.21830123.21830587           AluSq       SINE           SINE
2706    chr1.21841241.21841885            MIRb       SINE           SINE
2707    chr1.21852993.21853644            MIRc       SINE           SINE
2708    chr1.21852993.21853644            AluY       SINE           SINE
2709    chr1.21855295.21856201             L2a       LINE           LINE
2710    chr1.21861017.21861285             L2b       LINE           LINE
2711    chr1.21861017.21861285             L2b       LINE           LINE
2712    chr1.21861017.21861285             L2c       LINE           LINE
2713    chr1.21862122.21862520         L1ME3Cz       LINE           LINE
2714    chr1.21862122.21862520           AluSx       SINE           SINE
2715    chr1.21866359.21866656           MLT1K        LTR            LTR
2716    chr1.21866359.21866656           MLT1K        LTR            LTR
2717    chr1.21869709.21870250            <NA>       <NA>           <NA>
2718    chr1.21874708.21876224            MIRb       SINE           SINE
2719    chr1.21874708.21876224         LTR16A1        LTR            LTR
2720    chr1.21874708.21876224            MIRb       SINE           SINE
2721    chr1.21874708.21876224             L2c       LINE           LINE
2722    chr1.21880319.21880663            <NA>       <NA>           <NA>
2723    chr1.21882485.21882763            MER3        DNA            DNA
2724    chr1.21882485.21882763           MADE1        DNA            DNA
2725    chr1.21882485.21882763            MER3        DNA            DNA
2726    chr1.21882485.21882763              L3       LINE           LINE
2727    chr1.21885575.21886249       (GACAGA)n      Other  Simple_repeat
2728    chr1.21896673.21897222            <NA>       <NA>           <NA>
2729    chr1.21901451.21901810         (CCTG)n      Other  Simple_repeat
2730    chr1.21904752.21905251             L2a       LINE           LINE
2731    chr1.21904752.21905251           (AC)n      Other  Simple_repeat
2732    chr1.21904752.21905251             L2a       LINE           LINE
2733    chr1.21904752.21905251           (AC)n      Other  Simple_repeat
2734    chr1.21909645.21910327            <NA>       <NA>           <NA>
2735    chr1.21911248.21911817        (GCCCA)n      Other  Simple_repeat
2736    chr1.21915369.21915649            MIRb       SINE           SINE
2737    chr1.21919595.21919959             MIR       SINE           SINE
2738    chr1.21919595.21919959          MER5A1        DNA            DNA
2739    chr1.21919595.21919959             MIR       SINE           SINE
2740    chr1.21919595.21919959           AluSz       SINE           SINE
2741    chr1.21920230.21921526            MIRb       SINE           SINE
2742    chr1.21920230.21921526       (AATAAC)n      Other  Simple_repeat
2743    chr1.21920230.21921526            MIRb       SINE           SINE
2744    chr1.21924699.21924995             L2c       LINE           LINE
2745    chr1.21930089.21930535             L2a       LINE           LINE
2746    chr1.21930089.21930535           AluSz       SINE           SINE
2747    chr1.21930989.21931768            <NA>       <NA>           <NA>
2748    chr1.21935266.21936974             L2b       LINE           LINE
2749    chr1.21935266.21936974             L2c       LINE           LINE
2750    chr1.21935266.21936974            MIRb       SINE           SINE
2751    chr1.21937182.21937752      (GGCCCGC)n      Other  Simple_repeat
2752    chr1.21937182.21937752          G-rich      Other Low_complexity
2753    chr1.21939666.21940286            <NA>       <NA>           <NA>
2754    chr1.21942403.21943540         MER103C        DNA            DNA
2755    chr1.21942403.21943540            AluY       SINE           SINE
2756    chr1.21942403.21943540      Charlie10a        DNA            DNA
2757    chr1.21942403.21943540          AluSq2       SINE           SINE
2758    chr1.21944466.21944842            <NA>       <NA>           <NA>
2759    chr1.21955557.21956277            MIRb       SINE           SINE
2760    chr1.21956537.21957382            MIRc       SINE           SINE
2761    chr1.21963870.21964396             L2b       LINE           LINE
2762    chr1.21963870.21964396          AluSx4       SINE           SINE
2763    chr1.21968740.21969275         LTR33A_        LTR            LTR
2764    chr1.21968740.21969275           AluJb       SINE           SINE
2765    chr1.21974659.21975103           AluSp       SINE           SINE
2766    chr1.21974659.21975103            MIR3       SINE           SINE
2767    chr1.21980516.21981191          MER91C        DNA            DNA
2768    chr1.21994141.21994774         LTR33A_        LTR            LTR
2769    chr1.21994141.21994774           AluJb       SINE           SINE
2770    chr1.21999603.21999968           AluSp       SINE           SINE
2771    chr1.21999603.21999968            MIR3       SINE           SINE
2772    chr1.22005150.22006031          MER91C        DNA            DNA
2773    chr1.22005150.22006031            MIR3       SINE           SINE
2774    chr1.22019065.22019554            <NA>       <NA>           <NA>
2775    chr1.22024901.22026263          AluSx1       SINE           SINE
2776    chr1.22024901.22026263            MIRb       SINE           SINE
2777    chr1.22024901.22026263            MIRb       SINE           SINE
2778    chr1.22031359.22031984            AluY       SINE           SINE
2779    chr1.22039653.22040200           AluSc       SINE           SINE
2780    chr1.22039653.22040200        (AACAA)n      Other  Simple_repeat
2781    chr1.22039653.22040200            MIRc       SINE           SINE
2782    chr1.22052374.22053893          AluSx1       SINE           SINE
2783    chr1.22052374.22053893            MIRc       SINE           SINE
2784    chr1.22052374.22053893        (GGCGG)n      Other  Simple_repeat
2785    chr1.22052374.22053893          (GCG)n      Other  Simple_repeat
2786    chr1.22077839.22078073            <NA>       <NA>           <NA>
2787    chr1.22092251.22092610            <NA>       <NA>           <NA>
2788    chr1.22096146.22096659          AluSx3       SINE           SINE
2789    chr1.22105601.22105931            MIRb       SINE           SINE
2790    chr1.22111644.22112149         GA-rich      Other Low_complexity
2791    chr1.22111644.22112149            MIRc       SINE           SINE
2792    chr1.22112595.22113240            MIRb       SINE           SINE
2793    chr1.22114548.22114977            <NA>       <NA>           <NA>
2794    chr1.22120130.22120501            <NA>       <NA>           <NA>
2795    chr1.22121266.22121962             MIR       SINE           SINE
2796    chr1.22122372.22122800            MIRb       SINE           SINE
2797    chr1.22126472.22126958            MIRb       SINE           SINE
2798    chr1.22126472.22126958             MIR       SINE           SINE
2799    chr1.22131783.22132786            MIR3       SINE           SINE
2800    chr1.22133234.22134326             L2b       LINE           LINE
2801    chr1.22141824.22142926        (CAGCG)n      Other  Simple_repeat
2802    chr1.22143078.22143495      (TGCCCGC)n      Other  Simple_repeat
2803    chr1.22143078.22143495          (GCG)n      Other  Simple_repeat
2804    chr1.22143078.22143495         (GCGG)n      Other  Simple_repeat
2805    chr1.22143685.22143957            MIRc       SINE           SINE
2806    chr1.22209214.22209589             L2a       LINE           LINE
2807    chr1.22216176.22216744          MLT1E2        LTR            LTR
2808    chr1.22222267.22222468            <NA>       <NA>           <NA>
2809    chr1.22229339.22229883            MIRb       SINE           SINE
2810    chr1.22241232.22241594           L1MB8       LINE           LINE
2811    chr1.22250687.22251204            MIRb       SINE           SINE
2812    chr1.22250687.22251204          (TCC)n      Other  Simple_repeat
2813    chr1.22255544.22256118           LTR33        LTR            LTR
2814    chr1.22255544.22256118          AluSz6       SINE           SINE
2815    chr1.22273743.22274154             MIR       SINE           SINE
2816    chr1.22273743.22274154             MIR       SINE           SINE
2817    chr1.22275714.22276384            MIRb       SINE           SINE
2818    chr1.22317257.22317876            MIRb       SINE           SINE
2819    chr1.22317257.22317876           AluJr       SINE           SINE
2820    chr1.22333155.22333389            MIRc       SINE           SINE
2821    chr1.22341956.22342554       (AGAGAC)n      Other  Simple_repeat
2822    chr1.22362793.22363355            MIRb       SINE           SINE
2823    chr1.22375814.22376353            MIRb       SINE           SINE
2824    chr1.22380419.22380640            <NA>       <NA>           <NA>
2825    chr1.22383854.22384012             L2c       LINE           LINE
2826    chr1.22388685.22389522             MIR       SINE           SINE
2827    chr1.22388685.22389522             L2a       LINE           LINE
2828    chr1.22388685.22389522             L2b       LINE           LINE
2829    chr1.22388685.22389522            MIRc       SINE           SINE
2830    chr1.22388685.22389522         MamTip2        DNA            DNA
2831    chr1.22400612.22401201             L2b       LINE           LINE
2832    chr1.22407126.22407443            MIRb       SINE           SINE
2833    chr1.22407126.22407443          A-rich      Other Low_complexity
2834    chr1.22412615.22413342            MIRc       SINE           SINE
2835    chr1.22412615.22413342        MIR1_Amn       SINE           SINE
2836    chr1.22412615.22413342           (GT)n      Other  Simple_repeat
2837    chr1.22412615.22413342         GA-rich      Other Low_complexity
2838    chr1.22412615.22413342            MIRb       SINE           SINE
2839    chr1.22416447.22417032            MIRc       SINE           SINE
2840    chr1.22416447.22417032            MIR3       SINE           SINE
2841    chr1.22418716.22419427             L2c       LINE           LINE
2842    chr1.22418716.22419427         (GGAT)n      Other  Simple_repeat
2843    chr1.22418716.22419427            MIRb       SINE           SINE
2844    chr1.22420378.22420828            MIRc       SINE           SINE
2845    chr1.22447577.22448130              L2       LINE           LINE
2846    chr1.22451685.22452869          MER58B        DNA            DNA
2847    chr1.22465042.22465619          MER52C        LTR            LTR
2848    chr1.22471123.22471909       MamRep605      Other           LTR?
2849    chr1.22471123.22471909             MIR       SINE           SINE
2850    chr1.22471123.22471909           LTR53        LTR            LTR
2851    chr1.22487815.22488079             L2c       LINE           LINE
2852    chr1.22488179.22488810             L2a       LINE           LINE
2853    chr1.22500277.22500807              L2       LINE           LINE
2854    chr1.22527193.22527607            <NA>       <NA>           <NA>
2855    chr1.22527617.22528188            <NA>       <NA>           <NA>
2856    chr1.22556310.22556598         GA-rich      Other Low_complexity
2857    chr1.22563164.22563489          (CGG)n      Other  Simple_repeat
2858    chr1.22563903.22564179            <NA>       <NA>           <NA>
2859    chr1.22575549.22575994           L1MB3       LINE           LINE
2860    chr1.22575549.22575994              L2       LINE           LINE
2861    chr1.22575549.22575994            MIRb       SINE           SINE
2862    chr1.22578209.22580071            <NA>       <NA>           <NA>
2863    chr1.22582657.22583268            MIR3       SINE           SINE
2864    chr1.22601816.22602380           (TG)n      Other  Simple_repeat
2865    chr1.22611520.22611947            <NA>       <NA>           <NA>
2866    chr1.22625532.22626177           MLT1I        LTR            LTR
2867    chr1.22641759.22642606            MIRb       SINE           SINE
2868    chr1.22649825.22650530            <NA>       <NA>           <NA>
2869    chr1.22662348.22662742             L2b       LINE           LINE
2870    chr1.22665699.22666104            MIRb       SINE           SINE
2871    chr1.22665699.22666104          L1ME3G       LINE           LINE
2872    chr1.22674040.22674514        MamSINE1       SINE           SINE
2873    chr1.22674040.22674514             MIR       SINE           SINE
2874    chr1.22677971.22679084            MIRb       SINE           SINE
2875    chr1.22677971.22679084           (AC)n      Other  Simple_repeat
2876    chr1.22679101.22679414           (AC)n      Other  Simple_repeat
2877    chr1.22685305.22686105            <NA>       <NA>           <NA>
2878    chr1.22689543.22689897            MIR3       SINE           SINE
2879    chr1.22704244.22704952             MIR       SINE           SINE
2880    chr1.22704244.22704952          L1ME4a       LINE           LINE
2881    chr1.22710178.22710585            <NA>       <NA>           <NA>
2882    chr1.22710757.22710989          G-rich      Other Low_complexity
2883    chr1.22711551.22712387            MIRc       SINE           SINE
2884    chr1.22723033.22723544            <NA>       <NA>           <NA>
2885    chr1.22735095.22735888           AluJr       SINE           SINE
2886    chr1.22739573.22740181            <NA>       <NA>           <NA>
2887    chr1.22750180.22751162          MER113        DNA            DNA
2888    chr1.22750180.22751162             MIR       SINE           SINE
2889    chr1.22750180.22751162          MER113        DNA            DNA
2890    chr1.22750180.22751162            MIR3       SINE           SINE
2891    chr1.22756245.22756821            <NA>       <NA>           <NA>
2892    chr1.22780778.22781034            <NA>       <NA>           <NA>
2893    chr1.22790319.22790859            <NA>       <NA>           <NA>
2894    chr1.22804474.22804718            <NA>       <NA>           <NA>
2895    chr1.22805278.22805572            <NA>       <NA>           <NA>
2896    chr1.22808844.22809304             MIR       SINE           SINE
2897    chr1.22817574.22817878            <NA>       <NA>           <NA>
2898    chr1.22818930.22819284            MIR3       SINE           SINE
2899    chr1.22818930.22819284           (TC)n      Other  Simple_repeat
2900    chr1.22826569.22826974             L2b       LINE           LINE
2901    chr1.22827638.22828374            MIRb       SINE           SINE
2902    chr1.22829076.22829459            <NA>       <NA>           <NA>
2903    chr1.22831887.22832546            MIRb       SINE           SINE
2904    chr1.22831887.22832546            MIRc       SINE           SINE
2905    chr1.22841070.22841644             L2b       LINE           LINE
2906    chr1.22841070.22841644            MIR3       SINE           SINE
2907    chr1.22845051.22845741             MIR       SINE           SINE
2908    chr1.22845051.22845741           (AC)n      Other  Simple_repeat
2909    chr1.22861770.22862374            MIRc       SINE           SINE
2910    chr1.22861770.22862374            MIRb       SINE           SINE
2911    chr1.22864411.22864715           MLT1J        LTR            LTR
2912    chr1.22870248.22871063            MIRb       SINE           SINE
2913    chr1.22870248.22871063             L2b       LINE           LINE
2914    chr1.22870248.22871063            MIRb       SINE           SINE
2915    chr1.22870248.22871063             MIR       SINE           SINE
2916    chr1.22880002.22880670            MIR3       SINE           SINE
2917    chr1.22880002.22880670            MIRb       SINE           SINE
2918    chr1.22886264.22886781             L2b       LINE           LINE
2919    chr1.22886264.22886781           AluSp       SINE           SINE
2920    chr1.22886964.22887457            <NA>       <NA>           <NA>
2921    chr1.22888866.22889442           AluJb       SINE           SINE
2922    chr1.22893514.22894136          MER117        DNA            DNA
2923    chr1.22893514.22894136            MIRb       SINE           SINE
2924    chr1.22895395.22895830            <NA>       <NA>           <NA>
2925    chr1.22921100.22921982          G-rich      Other Low_complexity
2926    chr1.22921100.22921982            MIRb       SINE           SINE
2927    chr1.22921100.22921982             L2a       LINE           LINE
2928    chr1.22930244.22930725            MIRb       SINE           SINE
2929    chr1.22952834.22954406           MER5C        DNA            DNA
2930    chr1.22952834.22954406       (CCAGCA)n      Other  Simple_repeat
2931    chr1.22952834.22954406            MIR3       SINE           SINE
2932    chr1.22952834.22954406        UCON132b        DNA            DNA
2933    chr1.22963215.22963867            <NA>       <NA>           <NA>
2934    chr1.22964166.22964504          AluSx1       SINE           SINE
2935    chr1.22964166.22964504          MLT1H2        LTR            LTR
2936    chr1.22969179.22969655            L1M5       LINE           LINE
2937    chr1.22971486.22972017            MIRb       SINE           SINE
2938    chr1.22976377.22976934             L2c       LINE           LINE
2939    chr1.22976377.22976934            MIRb       SINE           SINE
2940    chr1.22976377.22976934              L2       LINE           LINE
2941    chr1.22976377.22976934             MIR       SINE           SINE
2942    chr1.22978233.22978795          AluSc8       SINE           SINE
2943    chr1.22978233.22978795            L1MD       LINE           LINE
2944    chr1.22978233.22978795         (TTCA)n      Other  Simple_repeat
2945    chr1.22978233.22978795             L2b       LINE           LINE
2946    chr1.22978233.22978795             L2a       LINE           LINE
2947    chr1.22978233.22978795           AluJr       SINE           SINE
2948    chr1.23019033.23020381             L2c       LINE           LINE
2949    chr1.23019033.23020381      (GCGCGGC)n      Other  Simple_repeat
2950    chr1.23019033.23020381          (GGC)n      Other  Simple_repeat
2951    chr1.23020847.23021233            <NA>       <NA>           <NA>
2952    chr1.23044425.23044896            <NA>       <NA>           <NA>
2953    chr1.23078938.23079369            <NA>       <NA>           <NA>
2954    chr1.23097389.23097655              L2       LINE           LINE
2955    chr1.23097389.23097655           AluJo       SINE           SINE
2956    chr1.23098637.23099041              L2       LINE           LINE
2957    chr1.23100040.23100726             L2a       LINE           LINE
2958    chr1.23100040.23100726      Charlie15a        DNA            DNA
2959    chr1.23102105.23102726          MER58A        DNA            DNA
2960    chr1.23102105.23102726           AluJr       SINE           SINE
2961    chr1.23103134.23103612           AluJr       SINE           SINE
2962    chr1.23103134.23103612      CR1-3_Croc       LINE           LINE
2963    chr1.23103134.23103612              L3       LINE           LINE
2964    chr1.23108996.23109379            <NA>       <NA>           <NA>
2965    chr1.23112165.23112428            MIR3       SINE           SINE
2966    chr1.23114436.23114814            MIR3       SINE           SINE
2967    chr1.23116194.23116439           AluJr       SINE           SINE
2968    chr1.23116194.23116439          AluJr4       SINE           SINE
2969    chr1.23122350.23122639            <NA>       <NA>           <NA>
2970    chr1.23126796.23127127            <NA>       <NA>           <NA>
2971    chr1.23129955.23130188            <NA>       <NA>           <NA>
2972    chr1.23140750.23141535            <NA>       <NA>           <NA>
2973    chr1.23153086.23153549          A-rich      Other Low_complexity
2974    chr1.23154213.23154632           L1ME1       LINE           LINE
2975    chr1.23154213.23154632           AluJr       SINE           SINE
2976    chr1.23154213.23154632            AluY       SINE           SINE
2977    chr1.23167281.23169016      (GCCCGCG)n      Other  Simple_repeat
2978    chr1.23167281.23169016          (CCG)n      Other  Simple_repeat
2979    chr1.23177308.23178741       Charlie4z        DNA            DNA
2980    chr1.23177308.23178741            MIRb       SINE           SINE
2981    chr1.23177308.23178741            MIRb       SINE           SINE
2982    chr1.23177308.23178741            MIRb       SINE           SINE
2983    chr1.23177308.23178741             L2b       LINE           LINE
2984    chr1.23177308.23178741              L3       LINE           LINE
2985    chr1.23184430.23184987       (TGTATA)n      Other  Simple_repeat
2986    chr1.23184430.23184987           AluJb       SINE           SINE
2987    chr1.23188637.23189299             L2c       LINE           LINE
2988    chr1.23188637.23189299             FAM       SINE           SINE
2989    chr1.23188637.23189299           AluSp       SINE           SINE
2990    chr1.23196804.23197462            MIRb       SINE           SINE
2991    chr1.23196804.23197462          AluSx1       SINE           SINE
2992    chr1.23214733.23215138             L2a       LINE           LINE
2993    chr1.23214733.23215138              L2       LINE           LINE
2994    chr1.23214733.23215138           AluJb       SINE           SINE
2995    chr1.23216871.23217917          (CGC)n      Other  Simple_repeat
2996    chr1.23216871.23217917          (CTC)n      Other  Simple_repeat
2997    chr1.23216871.23217917             L2a       LINE           LINE
2998    chr1.23224812.23225456            MIRc       SINE           SINE
2999    chr1.23343250.23345001       (CCACCC)n      Other  Simple_repeat
3000    chr1.23367898.23370081          A-rich      Other Low_complexity
3001    chr1.23377080.23377739             L2b       LINE           LINE
3002    chr1.23383886.23384173            MIRc       SINE           SINE
3003    chr1.23384741.23385570          AluSx1       SINE           SINE
3004    chr1.23384741.23385570            MIR3       SINE           SINE
3005    chr1.23384741.23385570       Tigger12c        DNA            DNA
3006    chr1.23384741.23385570        Tigger12        DNA            DNA
3007    chr1.23392884.23395345           MER1A        DNA            DNA
3008    chr1.23392884.23395345           (AC)n      Other  Simple_repeat
3009    chr1.23392884.23395345             MIR       SINE           SINE
3010    chr1.23392884.23395345            MIRb       SINE           SINE
3011    chr1.23392884.23395345         MER103C        DNA            DNA
3012    chr1.23392884.23395345            MIRc       SINE           SINE
3013    chr1.23392884.23395345       Tigger19a        DNA            DNA
3014    chr1.23392884.23395345          L1ME4c       LINE           LINE
3015    chr1.23402510.23403292             L2a       LINE           LINE
3016    chr1.23402510.23403292         (AATG)n      Other  Simple_repeat
3017    chr1.23402510.23403292             MIR       SINE           SINE
3018    chr1.23403608.23404318            MIRb       SINE           SINE
3019    chr1.23403608.23404318         MamRTE1       LINE           LINE
3020    chr1.23403608.23404318             L2b       LINE           LINE
3021    chr1.23411495.23412154           LTR61        LTR            LTR
3022    chr1.23417499.23418246           (CA)n      Other  Simple_repeat
3023    chr1.23417499.23418246             L2b       LINE           LINE
3024    chr1.23422363.23422696            <NA>       <NA>           <NA>
3025    chr1.23422942.23425300            MIRb       SINE           SINE
3026    chr1.23422942.23425300       (CCCCGC)n      Other  Simple_repeat
3027    chr1.23422942.23425300       (CCCCCG)n      Other  Simple_repeat
3028    chr1.23422942.23425300            (C)n      Other  Simple_repeat
3029    chr1.23422942.23425300           (GT)n      Other  Simple_repeat
3030    chr1.23444000.23444528          AluSc8       SINE           SINE
3031    chr1.23444000.23444528          AluSx1       SINE           SINE
3032    chr1.23444000.23444528            MIRb       SINE           SINE
3033    chr1.23449855.23450149            <NA>       <NA>           <NA>
3034    chr1.23469293.23469878           AluJo       SINE           SINE
3035    chr1.23469293.23469878             MIR       SINE           SINE
3036    chr1.23469293.23469878              L2       LINE           LINE
3037    chr1.23469293.23469878            MIRb       SINE           SINE
3038    chr1.23475242.23475661          MLT1N2        LTR            LTR
3039    chr1.23475242.23475661             L2b       LINE           LINE
3040    chr1.23478898.23479355           MLT1O        LTR            LTR
3041    chr1.23483106.23484957         CR1_Mam       LINE           LINE
3042    chr1.23483106.23484957          G-rich      Other Low_complexity
3043    chr1.23483106.23484957            MIRb       SINE           SINE
3044    chr1.23496796.23497701           MER96        DNA            DNA
3045    chr1.23496796.23497701            MIRb       SINE           SINE
3046    chr1.23496796.23497701           AluJb       SINE           SINE
3047    chr1.23528153.23528778            MIR3       SINE           SINE
3048    chr1.23528153.23528778            MIRb       SINE           SINE
3049    chr1.23530712.23531715            (T)n      Other  Simple_repeat
3050    chr1.23530712.23531715            (C)n      Other  Simple_repeat
3051    chr1.23539562.23540359           AluSz       SINE           SINE
3052    chr1.23539562.23540359            MIRc       SINE           SINE
3053    chr1.23539562.23540359            MIR3       SINE           SINE
3054    chr1.23539562.23540359            AluY       SINE           SINE
3055    chr1.23544168.23544374           AluJr       SINE           SINE
3056    chr1.23544168.23544374            MIRb       SINE           SINE
3057    chr1.23544631.23545246             MIR       SINE           SINE
3058    chr1.23554361.23555309         (GAAG)n      Other  Simple_repeat
3059    chr1.23554361.23555309       (GAGCCA)n      Other  Simple_repeat
3060    chr1.23554361.23555309            MIRb       SINE           SINE
3061    chr1.23556092.23556655        MIR1_Amn       SINE           SINE
3062    chr1.23556092.23556655            MIRb       SINE           SINE
3063    chr1.23558126.23559811            MIRc       SINE           SINE
3064    chr1.23562162.23562611            <NA>       <NA>           <NA>
3065    chr1.23564601.23564917           AluSz       SINE           SINE
3066    chr1.23568183.23569165            <NA>       <NA>           <NA>
3067    chr1.23575437.23575877            <NA>       <NA>           <NA>
3068    chr1.23577013.23577928            MIR3       SINE           SINE
3069    chr1.23577013.23577928            (A)n      Other  Simple_repeat
3070    chr1.23585594.23585993            <NA>       <NA>           <NA>
3071    chr1.23586662.23587050             MIR       SINE           SINE
3072    chr1.23586662.23587050           AluSx       SINE           SINE
3073    chr1.23586662.23587050           AluJb       SINE           SINE
3074    chr1.23592575.23593204           AluJr       SINE           SINE
3075    chr1.23592575.23593204            MIRb       SINE           SINE
3076    chr1.23592575.23593204              L2       LINE           LINE
3077    chr1.23592575.23593204              L2       LINE           LINE
3078    chr1.23593634.23593937             L2b       LINE           LINE
3079    chr1.23597765.23598093             L2a       LINE           LINE
3080    chr1.23619342.23620011            MIRc       SINE           SINE
3081    chr1.23619342.23620011          (CCG)n      Other  Simple_repeat
3082    chr1.23619342.23620011       (GGCGTG)n      Other  Simple_repeat
3083    chr1.23619342.23620011      (CCCCTCC)n      Other  Simple_repeat
3084    chr1.23634872.23635477             MIR       SINE           SINE
3085    chr1.23637374.23638126          AluSg7       SINE           SINE
3086    chr1.23637374.23638126            MIRc       SINE           SINE
3087    chr1.23643948.23644401          MER45A        DNA            DNA
3088    chr1.23645711.23646400            MIRc       SINE           SINE
3089    chr1.23645711.23646400            MIRb       SINE           SINE
3090    chr1.23651048.23651684           MLT1O        LTR            LTR
3091    chr1.23651048.23651684            MIR3       SINE           SINE
3092    chr1.23657745.23658092            <NA>       <NA>           <NA>
3093    chr1.23665136.23665551           AluSz       SINE           SINE
3094    chr1.23673054.23673694          FLAM_C       SINE           SINE
3095    chr1.23673054.23673694            L1M5       LINE           LINE
3096    chr1.23673054.23673694             L2a       LINE           LINE
3097    chr1.23691561.23692695            <NA>       <NA>           <NA>
3098    chr1.23696692.23696901            <NA>       <NA>           <NA>
3099    chr1.23707686.23708131             L2a       LINE           LINE
3100    chr1.23707686.23708131           AluJb       SINE           SINE
3101    chr1.23718463.23718916             L2a       LINE           LINE
3102    chr1.23742927.23745070            MIRb       SINE           SINE
3103    chr1.23742927.23745070          G-rich      Other Low_complexity
3104    chr1.23742927.23745070          AluSg7       SINE           SINE
3105    chr1.23751147.23751765            <NA>       <NA>           <NA>
3106    chr1.23756794.23757250            <NA>       <NA>           <NA>
3107    chr1.23758943.23759712           AluJo       SINE           SINE
3108    chr1.23758943.23759712            MIRb       SINE           SINE
3109    chr1.23768637.23769016           MER20        DNA            DNA
3110    chr1.23768637.23769016           MLT1I        LTR            LTR
3111    chr1.23772039.23772559           AluJb       SINE           SINE
3112    chr1.23772039.23772559        Tigger5b        DNA            DNA
3113    chr1.23772039.23772559         Tigger7        DNA            DNA
3114    chr1.23777876.23778838            MIRb       SINE           SINE
3115    chr1.23777876.23778838            (C)n      Other  Simple_repeat
3116    chr1.23777876.23778838        (GAGGC)n      Other  Simple_repeat
3117    chr1.23777876.23778838        MIR1_Amn       SINE           SINE
3118    chr1.23779839.23780329            <NA>       <NA>           <NA>
3119    chr1.23790174.23790532          AluYk3       SINE           SINE
3120    chr1.23790174.23790532            MIRc       SINE           SINE
3121    chr1.23790827.23792869          G-rich      Other Low_complexity
3122    chr1.23799423.23801278            MIRb       SINE           SINE
3123    chr1.23799423.23801278       (CCCCCG)n      Other  Simple_repeat
3124    chr1.23807432.23807752             L2c       LINE           LINE
3125    chr1.23809653.23810125           MLT1C        LTR            LTR
3126    chr1.23809653.23810125            MIRb       SINE           SINE
3127    chr1.23810881.23811144            <NA>       <NA>           <NA>
3128    chr1.23824800.23825813            MIRb       SINE           SINE
3129    chr1.23824800.23825813            MIR3       SINE           SINE
3130    chr1.23824800.23825813             L2b       LINE           LINE
3131    chr1.23824800.23825813          AluSx1       SINE           SINE
3132    chr1.23838101.23838853          LTR1A2        LTR            LTR
3133    chr1.23838101.23838853          LTR1A2        LTR            LTR
3134    chr1.23838101.23838853           L1MB4       LINE           LINE
3135    chr1.23848882.23849615          AluSq2       SINE           SINE
3136    chr1.23848882.23849615           AluSg       SINE           SINE
3137    chr1.23865566.23865876            <NA>       <NA>           <NA>
3138    chr1.23867337.23868813        MIR1_Amn       SINE           SINE
3139    chr1.23867337.23868813            MIR3       SINE           SINE
3140    chr1.23867337.23868813           AluJb       SINE           SINE
3141    chr1.23875314.23875845     MamGypLTR1d        LTR            LTR
3142    chr1.23902865.23903346          (GGC)n      Other  Simple_repeat
3143    chr1.23902865.23903346        (AGCCT)n      Other  Simple_repeat
3144    chr1.23902865.23903346           AluJo       SINE           SINE
3145    chr1.23916779.23917245           MER5A        DNA            DNA
3146    chr1.23916779.23917245           AluJo       SINE           SINE
3147    chr1.23919970.23920462       (CAGCCC)n      Other  Simple_repeat
3148    chr1.23919970.23920462             MIR       SINE           SINE
3149    chr1.23930898.23931455           AluSq       SINE           SINE
3150    chr1.23951563.23952069        MIR1_Amn       SINE           SINE
3151    chr1.23951563.23952069          AluSq2       SINE           SINE
3152    chr1.23958994.23960498             L2b       LINE           LINE
3153    chr1.23973458.23974044           AluJo       SINE           SINE
3154    chr1.23973458.23974044          L1ME3F       LINE           LINE
3155    chr1.23973458.23974044          AluSx3       SINE           SINE
3156    chr1.23979822.23980871       (CTCCAC)n      Other  Simple_repeat
3157    chr1.23984469.23984752            <NA>       <NA>           <NA>
3158    chr1.23999041.23999762           THE1D        LTR            LTR
3159    chr1.23999041.23999762             L2c       LINE           LINE
3160    chr1.23999041.23999762           AluSz       SINE           SINE
3161    chr1.24009339.24010024             L2b       LINE           LINE
3162    chr1.24009339.24010024              L2       LINE           LINE
3163    chr1.24015883.24016197            <NA>       <NA>           <NA>
3164    chr1.24018576.24019299             L2a       LINE           LINE
3165    chr1.24018576.24019299            MIRc       SINE           SINE
3166    chr1.24022534.24023012          MER67B        LTR            LTR
3167    chr1.24022534.24023012       (CCCACT)n      Other  Simple_repeat
3168    chr1.24022534.24023012          MER67B        LTR            LTR
3169    chr1.24028026.24028710           AluJr       SINE           SINE
3170    chr1.24028026.24028710          L1ME4b       LINE           LINE
3171    chr1.24028026.24028710           AluSx       SINE           SINE
3172    chr1.24046247.24047367             MIR       SINE           SINE
3173    chr1.24046247.24047367           AluJb       SINE           SINE
3174    chr1.24046247.24047367             Alu       SINE           SINE
3175    chr1.24046247.24047367          MER115        DNA            DNA
3176    chr1.24052255.24052844           AluSp       SINE           SINE
3177    chr1.24070885.24071365          MER20B        DNA            DNA
3178    chr1.24077297.24077798             L2c       LINE           LINE
3179    chr1.24096051.24096816             MIR       SINE           SINE
3180    chr1.24096051.24096816            MIR3       SINE           SINE
3181    chr1.24096051.24096816         GA-rich      Other Low_complexity
3182    chr1.24096051.24096816           (GT)n      Other  Simple_repeat
3183    chr1.24107938.24108087            <NA>       <NA>           <NA>
3184    chr1.24108862.24109170            MIRc       SINE           SINE
3185    chr1.24108862.24109170            MIR3       SINE           SINE
3186    chr1.24108862.24109170             L2b       LINE           LINE
3187    chr1.24112039.24112897           LTR32        LTR            LTR
3188    chr1.24117709.24118208          AluSx1       SINE           SINE
3189    chr1.24120125.24120874            <NA>       <NA>           <NA>
3190    chr1.24126071.24126742            MIR3       SINE           SINE
3191    chr1.24126071.24126742            MIRc       SINE           SINE
3192    chr1.24136196.24136607           AluJb       SINE           SINE
3193    chr1.24136196.24136607             L2a       LINE           LINE
3194    chr1.24142697.24143644          L1ME4a       LINE           LINE
3195    chr1.24149750.24151752             L2c       LINE           LINE
3196    chr1.24149750.24151752          AluSx1       SINE           SINE
3197    chr1.24149750.24151752          MER34B        LTR            LTR
3198    chr1.24149750.24151752          LTR10D        LTR            LTR
3199    chr1.24149750.24151752          MER34B        LTR            LTR
3200    chr1.24168177.24168505            MIRb       SINE           SINE
3201    chr1.24186833.24188034      (CCCGCCT)n      Other  Simple_repeat
3202    chr1.24186833.24188034            (G)n      Other  Simple_repeat
3203    chr1.24191901.24192444             L2c       LINE           LINE
3204    chr1.24191901.24192444             MIR       SINE           SINE
3205    chr1.24191901.24192444           AluSq       SINE           SINE
3206    chr1.24199345.24199698            MIRc       SINE           SINE
3207    chr1.24201930.24202696            <NA>       <NA>           <NA>
3208    chr1.24203189.24203677         (CCTC)n      Other  Simple_repeat
3209    chr1.24215387.24215681             L2a       LINE           LINE
3210    chr1.24236132.24237150             MIR       SINE           SINE
3211    chr1.24236132.24237150             L2c       LINE           LINE
3212    chr1.24266295.24267017         (GGGA)n      Other  Simple_repeat
3213    chr1.24266295.24267017            MIRb       SINE           SINE
3214    chr1.24276777.24277186        L4_C_Mam       LINE           LINE
3215    chr1.24276777.24277186             MIR       SINE           SINE
3216    chr1.24309818.24310178            MIRb       SINE           SINE
3217    chr1.24315455.24315649          MER91B        DNA            DNA
3218    chr1.24319234.24320015            <NA>       <NA>           <NA>
3219    chr1.24321938.24322697            <NA>       <NA>           <NA>
3220    chr1.24330034.24330441           MER5A        DNA            DNA
3221    chr1.24330034.24330441           L1MA6       LINE           LINE
3222    chr1.24330034.24330441           MER5A        DNA            DNA
3223    chr1.24330034.24330441             MIR       SINE           SINE
3224    chr1.24336804.24337132          MER91C        DNA            DNA
3225    chr1.24336804.24337132          MER91C        DNA            DNA
3226    chr1.24344116.24344915            MIRc       SINE           SINE
3227    chr1.24344116.24344915           AluJb       SINE           SINE
3228    chr1.24351952.24352663   (GCAGGTGTGA)n      Other  Simple_repeat
3229    chr1.24351952.24352663            MIRb       SINE           SINE
3230    chr1.24363123.24363499            MIRb       SINE           SINE
3231    chr1.24365077.24365572        AmnSINE1       SINE           SINE
3232    chr1.24369152.24369561            MIRb       SINE           SINE
3233    chr1.24369152.24369561            MIRb       SINE           SINE
3234    chr1.24369152.24369561             L2b       LINE           LINE
3235    chr1.24383989.24384707            MIRb       SINE           SINE
3236    chr1.24391336.24391561            <NA>       <NA>           <NA>
3237    chr1.24391935.24392774           LTR52        LTR            LTR
3238    chr1.24394004.24394238          L1ME3A       LINE           LINE
3239    chr1.24409571.24409900          MER44C        DNA            DNA
3240    chr1.24413408.24413841            <NA>       <NA>           <NA>
3241    chr1.24415315.24416304            <NA>       <NA>           <NA>
3242    chr1.24416947.24417350            <NA>       <NA>           <NA>
3243    chr1.24417750.24417910             L2a       LINE           LINE
3244    chr1.24419236.24419546            <NA>       <NA>           <NA>
3245    chr1.24425582.24425859            MIRb       SINE           SINE
3246    chr1.24425582.24425859            FRAM       SINE           SINE
3247    chr1.24425582.24425859             L2c       LINE           LINE
3248    chr1.24427285.24428511            MIRb       SINE           SINE
3249    chr1.24427285.24428511          MER39B        LTR            LTR
3250    chr1.24427285.24428511           AluJb       SINE           SINE
3251    chr1.24427285.24428511           (AG)n      Other  Simple_repeat
3252    chr1.24427285.24428511          MER39B        LTR            LTR
3253    chr1.24443367.24443636          MER117        DNA            DNA
3254    chr1.24464512.24464984         MER102c        DNA            DNA
3255    chr1.24464512.24464984       Tigger15a        DNA            DNA
3256    chr1.24468601.24469428            <NA>       <NA>           <NA>
3257    chr1.24502093.24503478         GA-rich      Other Low_complexity
3258    chr1.24502093.24503478       (CCCCCG)n      Other  Simple_repeat
3259    chr1.24502093.24503478        (GCGGG)n      Other  Simple_repeat
3260    chr1.24502093.24503478            (A)n      Other  Simple_repeat
3261    chr1.24511704.24511920         Tigger1        DNA            DNA
3262    chr1.24515652.24516071           AluSg       SINE           SINE
3263    chr1.24541091.24541265            <NA>       <NA>           <NA>
3264    chr1.24555598.24556367             L2a       LINE           LINE
3265    chr1.24567924.24568401            <NA>       <NA>           <NA>
3266    chr1.24584044.24584633            <NA>       <NA>           <NA>
3267    chr1.24587038.24587566            MIRb       SINE           SINE
3268    chr1.24587038.24587566             L3b       LINE           LINE
3269    chr1.24587038.24587566         MamTip2        DNA            DNA
3270    chr1.24587038.24587566           AluJb       SINE           SINE
3271    chr1.24591664.24592355             L2a       LINE           LINE
3272    chr1.24600731.24601712          FLAM_A       SINE           SINE
3273    chr1.24635138.24635551            <NA>       <NA>           <NA>
3274    chr1.24642280.24644265            AluY       SINE           SINE
3275    chr1.24642280.24644265       (GAGGCC)n      Other  Simple_repeat
3276    chr1.24664417.24664886            <NA>       <NA>           <NA>
3277    chr1.24673393.24673590             L2b       LINE           LINE
3278    chr1.24673393.24673590            (G)n      Other  Simple_repeat
3279    chr1.24683451.24684298           AluSg       SINE           SINE
3280    chr1.24683451.24684298           LTR23        LTR            LTR
3281    chr1.24683451.24684298          MER112        DNA            DNA
3282    chr1.24688389.24689114            MIRb       SINE           SINE
3283    chr1.24688389.24689114          MER104        DNA            DNA
3284    chr1.24688389.24689114              L3       LINE           LINE
3285    chr1.24694070.24694886            MIR3       SINE           SINE
3286    chr1.24694070.24694886             MIR       SINE           SINE
3287    chr1.24694070.24694886           AluJb       SINE           SINE
3288    chr1.24695546.24696016            <NA>       <NA>           <NA>
3289    chr1.24704815.24705976           AluJb       SINE           SINE
3290    chr1.24704815.24705976            MIRb       SINE           SINE
3291    chr1.24704815.24705976            MIR3       SINE           SINE
3292    chr1.24707862.24708082          G-rich      Other Low_complexity
3293    chr1.24707862.24708082          AluSx3       SINE           SINE
3294    chr1.24713025.24713818         MamTip2        DNA            DNA
3295    chr1.24713025.24713818            MIR3       SINE           SINE
3296    chr1.24718861.24719332           AluSz       SINE           SINE
3297    chr1.24718861.24719332           AluJr       SINE           SINE
3298    chr1.24720185.24720434            <NA>       <NA>           <NA>
3299    chr1.24724670.24725320           MLT1L        LTR            LTR
3300    chr1.24724670.24725320             L2b       LINE           LINE
3301    chr1.24724670.24725320             MIR       SINE           SINE
3302    chr1.24727469.24727748          AluSq2       SINE           SINE
3303    chr1.24730451.24731084            <NA>       <NA>           <NA>
3304    chr1.24735509.24736370             L2a       LINE           LINE
3305    chr1.24735509.24736370           (AG)n      Other  Simple_repeat
3306    chr1.24735509.24736370           (GT)n      Other  Simple_repeat
3307    chr1.24742331.24742590             L2a       LINE           LINE
3308    chr1.24744881.24745921          (CAG)n      Other  Simple_repeat
3309    chr1.24764686.24765269          (TTG)n      Other  Simple_repeat
3310    chr1.24764686.24765269             L2a       LINE           LINE
3311    chr1.24764686.24765269             MIR       SINE           SINE
3312    chr1.24769967.24770536           AluJb       SINE           SINE
3313    chr1.24793743.24794488         L1PREC2       LINE           LINE
3314    chr1.24804091.24804517         (TGTG)n      Other  Simple_repeat
3315    chr1.24805627.24805799            <NA>       <NA>           <NA>
3316    chr1.24830630.24830960          L1ME3G       LINE           LINE
3317    chr1.24835059.24835469          AluSz6       SINE           SINE
3318    chr1.24847825.24848891           AluJr       SINE           SINE
3319    chr1.24898076.24898558             L3b       LINE           LINE
3320    chr1.24906559.24906883             L2a       LINE           LINE
3321    chr1.24906559.24906883            MIRc       SINE           SINE
3322    chr1.24909536.24909889            MIR3       SINE           SINE
3323    chr1.24929495.24929964          (GCC)n      Other  Simple_repeat
3324    chr1.24932342.24932617            <NA>       <NA>           <NA>
3325    chr1.24970351.24971406            MIRc       SINE           SINE
3326    chr1.24970351.24971406            MIRb       SINE           SINE
3327    chr1.24972238.24972615            MIRb       SINE           SINE
3328    chr1.24972238.24972615            MIRb       SINE           SINE
3329    chr1.25008122.25008352          MER117        DNA            DNA
3330    chr1.25008122.25008352            MIRc       SINE           SINE
3331    chr1.25022334.25023264            <NA>       <NA>           <NA>
3332    chr1.25032078.25032667            MIR3       SINE           SINE
3333    chr1.25032078.25032667            MIRb       SINE           SINE
3334    chr1.25032078.25032667       Tigger13a        DNA            DNA
3335    chr1.25037197.25037953             L2b       LINE           LINE
3336    chr1.25037197.25037953            MIRc       SINE           SINE
3337    chr1.25037197.25037953        (CCACC)n      Other  Simple_repeat
3338    chr1.25042393.25042879          MER52A        LTR            LTR
3339    chr1.25066360.25066813            MIRb       SINE           SINE
3340    chr1.25090972.25091540            MIR3       SINE           SINE
3341    chr1.25090972.25091540            MIR3       SINE           SINE
3342    chr1.25096654.25097162           MER20        DNA            DNA
3343    chr1.25096654.25097162           L1MEf       LINE           LINE
3344    chr1.25101489.25102010            MIR3       SINE           SINE
3345    chr1.25103317.25103600            <NA>       <NA>           <NA>
3346    chr1.25122829.25123136 ERV3-16A3_I-int        LTR            LTR
3347    chr1.25122829.25123136            ORSL        DNA            DNA
3348    chr1.25123639.25123855            ORSL        DNA            DNA
3349    chr1.25123639.25123855 ERV3-16A3_I-int        LTR            LTR
3350    chr1.25145875.25146483            <NA>       <NA>           <NA>
3351    chr1.25182588.25183163            <NA>       <NA>           <NA>
3352    chr1.25199949.25200436          G-rich      Other Low_complexity
3353    chr1.25223532.25223850          FLAM_C       SINE           SINE
3354    chr1.25231916.25233445           MER5B        DNA            DNA
3355    chr1.25231916.25233445           LTR8B        LTR            LTR
3356    chr1.25239484.25240424            FRAM       SINE           SINE
3357    chr1.25246426.25248049          G-rich      Other Low_complexity
3358    chr1.25254016.25254351            <NA>       <NA>           <NA>
3359    chr1.25255716.25256189           MER1A        DNA            DNA
3360    chr1.25255716.25256189           AluJr       SINE           SINE
3361    chr1.25267560.25268386            MIRb       SINE           SINE
3362    chr1.25267560.25268386             L2a       LINE           LINE
3363    chr1.25267560.25268386           AluSx       SINE           SINE
3364    chr1.25302450.25302682            <NA>       <NA>           <NA>
3365    chr1.25304886.25305449         (TCAT)n      Other  Simple_repeat
3366    chr1.25304886.25305449             L2c       LINE           LINE
3367    chr1.25304886.25305449         (TATT)n      Other  Simple_repeat
3368    chr1.25304886.25305449          AluSx1       SINE           SINE
3369    chr1.25319978.25320971           AluSp       SINE           SINE
3370    chr1.25319978.25320971       Tigger15a        DNA            DNA
3371    chr1.25319978.25320971           AluJb       SINE           SINE
3372    chr1.25338071.25339278            <NA>       <NA>           <NA>
3373    chr1.25343717.25344232             L2a       LINE           LINE
3374    chr1.25343717.25344232           AluJb       SINE           SINE
3375    chr1.25352203.25352540            AluY       SINE           SINE
3376    chr1.25361262.25361637            <NA>       <NA>           <NA>
3377    chr1.25369166.25369899        MIR1_Amn       SINE           SINE
3378    chr1.25369166.25369899          G-rich      Other Low_complexity
3379    chr1.25369166.25369899          AluSz6       SINE           SINE
3380    chr1.25371558.25372159           AluJb       SINE           SINE
3381    chr1.25389734.25390181            <NA>       <NA>           <NA>
3382    chr1.25403154.25403404            MIRb       SINE           SINE
3383    chr1.25430018.25431414        (CCGGC)n      Other  Simple_repeat
3384    chr1.25430018.25431414          (GCG)n      Other  Simple_repeat
3385    chr1.25430018.25431414          G-rich      Other Low_complexity
3386    chr1.25442138.25442563          MER5A1        DNA            DNA
3387    chr1.25468115.25468501            <NA>       <NA>           <NA>
3388    chr1.25471119.25471322          AluSz6       SINE           SINE
3389    chr1.25474300.25474898         MER102b        DNA            DNA
3390    chr1.25474300.25474898         MamTip2        DNA            DNA
3391    chr1.25482215.25482864             L2b       LINE           LINE
3392    chr1.25482215.25482864             MIR       SINE           SINE
3393    chr1.25492078.25492705             L2c       LINE           LINE
3394    chr1.25492078.25492705             L2a       LINE           LINE
3395    chr1.25501217.25502088            MIRb       SINE           SINE
3396    chr1.25501217.25502088          MER5A1        DNA            DNA
3397    chr1.25503710.25504246           MER5A        DNA            DNA
3398    chr1.25503710.25504246           AluJb       SINE           SINE
3399    chr1.25507012.25507310           L1PA2       LINE           LINE
3400    chr1.25520612.25521082             MIR       SINE           SINE
3401    chr1.25523488.25524057            MIRb       SINE           SINE
3402    chr1.25543291.25544324        MIR1_Amn       SINE           SINE
3403    chr1.25543291.25544324          (GGC)n      Other  Simple_repeat
3404    chr1.25543291.25544324        (GCCGG)n      Other  Simple_repeat
3405    chr1.25549364.25550423             MIR       SINE           SINE
3406    chr1.25549364.25550423             L2c       LINE           LINE
3407    chr1.25555202.25555473            <NA>       <NA>           <NA>
3408    chr1.25556693.25557262             MIR       SINE           SINE
3409    chr1.25566685.25567469            <NA>       <NA>           <NA>
3410    chr1.25568991.25569331            <NA>       <NA>           <NA>
3411    chr1.25572720.25573032            MIRb       SINE           SINE
3412    chr1.25574625.25575106            <NA>       <NA>           <NA>
3413    chr1.25586191.25586945           (GT)n      Other  Simple_repeat
3414    chr1.25587881.25588523         LTR5_Hs        LTR            LTR
3415    chr1.25590130.25590426          MLT2B2        LTR            LTR
3416    chr1.25590130.25590426             L2b       LINE           LINE
3417    chr1.25608349.25608849           AluSx       SINE           SINE
3418    chr1.25608349.25608849           MER33        DNA            DNA
3419    chr1.25608349.25608849           MLT1I        LTR            LTR
3420    chr1.25615892.25617366          (CGG)n      Other  Simple_repeat
3421    chr1.25615892.25617366          MER52D        LTR            LTR
3422    chr1.25617612.25618533            <NA>       <NA>           <NA>
3423    chr1.25619177.25619531            <NA>       <NA>           <NA>
3424    chr1.25645485.25645905            <NA>       <NA>           <NA>
3425    chr1.25651112.25651622            <NA>       <NA>           <NA>
3426    chr1.25658879.25659459            <NA>       <NA>           <NA>
3427    chr1.25667846.25668309             L2a       LINE           LINE
3428    chr1.25672805.25673361             L2b       LINE           LINE
3429    chr1.25672805.25673361             MIR       SINE           SINE
3430    chr1.25672805.25673361             MIR       SINE           SINE
3431    chr1.25683709.25684128             L2b       LINE           LINE
3432    chr1.25688447.25689100            MIRc       SINE           SINE
3433    chr1.25688447.25689100             L2b       LINE           LINE
3434    chr1.25695128.25695581            <NA>       <NA>           <NA>
3435    chr1.25695834.25696355            MIR3       SINE           SINE
3436    chr1.25695834.25696355         (TTTC)n      Other  Simple_repeat
3437    chr1.25698435.25698676            MIRc       SINE           SINE
3438    chr1.25698435.25698676             L2c       LINE           LINE
3439    chr1.25698435.25698676           AluSg       SINE           SINE
3440    chr1.25699487.25700894          (TTG)n      Other  Simple_repeat
3441    chr1.25708230.25708624          MER41B        LTR            LTR
3442    chr1.25708230.25708624           AluSq       SINE           SINE
3443    chr1.25727267.25728643            MIRc       SINE           SINE
3444    chr1.25727267.25728643            MIRc       SINE           SINE
3445    chr1.25727267.25728643          MLT1J1        LTR            LTR
3446    chr1.25736176.25736781            MIRb       SINE           SINE
3447    chr1.25736176.25736781           AluJb       SINE           SINE
3448    chr1.25743413.25745120            MIR3       SINE           SINE
3449    chr1.25743413.25745120       Tigger19b        DNA            DNA
3450    chr1.25743413.25745120       (CCTCAC)n      Other  Simple_repeat
3451    chr1.25743413.25745120       Tigger19b        DNA            DNA
3452    chr1.25760566.25761044            MIRb       SINE           SINE
3453    chr1.25765219.25765419            <NA>       <NA>           <NA>
3454    chr1.25766279.25766892            MIRc       SINE           SINE
3455    chr1.25768781.25769364           (CA)n      Other  Simple_repeat
3456    chr1.25771000.25772084            MIR3       SINE           SINE
3457    chr1.25772912.25773197             L2a       LINE           LINE
3458    chr1.25775080.25775382            <NA>       <NA>           <NA>
3459    chr1.25782844.25783067            <NA>       <NA>           <NA>
3460    chr1.25784608.25785223            MIR3       SINE           SINE
3461    chr1.25784608.25785223             L2a       LINE           LINE
3462    chr1.25786876.25787351        (TCTCC)n      Other  Simple_repeat
3463    chr1.25794322.25794693             L2b       LINE           LINE
3464    chr1.25794322.25794693           AluSc       SINE           SINE
3465    chr1.25796749.25797230           (TG)n      Other  Simple_repeat
3466    chr1.25797902.25798319             L2c       LINE           LINE
3467    chr1.25799758.25801287        (CCCCG)n      Other  Simple_repeat
3468    chr1.25799758.25801287              L3       LINE           LINE
3469    chr1.25799758.25801287            MIRc       SINE           SINE
3470    chr1.25809842.25811291             L2b       LINE           LINE
3471    chr1.25809842.25811291            MIRc       SINE           SINE
3472    chr1.25809842.25811291            MIRc       SINE           SINE
3473    chr1.25819087.25821067          MER45A        DNA            DNA
3474    chr1.25819087.25821067           (GT)n      Other  Simple_repeat
3475    chr1.25819087.25821067        MIR1_Amn       SINE           SINE
3476    chr1.25829086.25829583            <NA>       <NA>           <NA>
3477    chr1.25842536.25843050         Tigger1        DNA            DNA
3478    chr1.25842536.25843050           AluJr       SINE           SINE
3479    chr1.25845197.25845560              L2       LINE           LINE
3480    chr1.25848688.25848861           MER77        LTR            LTR
3481    chr1.25858740.25859836            MIRb       SINE           SINE
3482    chr1.25858740.25859836       (CCGGCC)n      Other  Simple_repeat
3483    chr1.25858740.25859836        (CCGCC)n      Other  Simple_repeat
3484    chr1.25874859.25876424            <NA>       <NA>           <NA>
3485    chr1.25879786.25879914            MIRc       SINE           SINE
3486    chr1.25890435.25890835          LTR22A        LTR            LTR
3487    chr1.25892268.25892921          AluSx1       SINE           SINE
3488    chr1.25892268.25892921            (T)n      Other  Simple_repeat
3489    chr1.25892268.25892921            MIR3       SINE           SINE
3490    chr1.25895237.25895833            AluY       SINE           SINE
3491    chr1.25895237.25895833         MER102b        DNA            DNA
3492    chr1.25905085.25907311         (AGGG)n      Other  Simple_repeat
3493    chr1.25909017.25909417            <NA>       <NA>           <NA>
3494    chr1.25912220.25912740          L1ME4b       LINE           LINE
3495    chr1.25914151.25914611          MER115        DNA            DNA
3496    chr1.25914151.25914611          MER115        DNA            DNA
3497    chr1.25914151.25914611             MIR       SINE           SINE
3498    chr1.25918078.25918271            <NA>       <NA>           <NA>
3499    chr1.25922389.25923509            MIR3       SINE           SINE
3500    chr1.25922389.25923509            MIRb       SINE           SINE
3501    chr1.25958430.25958842       Tigger15a        DNA            DNA
3502    chr1.25958430.25958842           MLT1I        LTR            LTR
3503    chr1.25990830.25991327            MIRc       SINE           SINE
3504    chr1.25990830.25991327          AluSc5       SINE           SINE
3505    chr1.25992176.25992704          FLAM_A       SINE           SINE
3506    chr1.25992176.25992704          (TCA)n      Other  Simple_repeat
3507    chr1.25992176.25992704            MIRb       SINE           SINE
3508    chr1.25997015.25997473            MIRc       SINE           SINE
3509    chr1.25997666.25998667            <NA>       <NA>           <NA>
3510    chr1.26010100.26010378          LTR35A        LTR            LTR
3511    chr1.26010727.26011198          LTR35A        LTR            LTR
3512    chr1.26010727.26011198          MER74A        LTR            LTR
3513    chr1.26010727.26011198             L2a       LINE           LINE
3514    chr1.26016546.26017389            MIR3       SINE           SINE
3515    chr1.26016546.26017389             MIR       SINE           SINE
3516    chr1.26017483.26018071          FLAM_A       SINE           SINE
3517    chr1.26020402.26021143             L2b       LINE           LINE
3518    chr1.26020402.26021143             L2b       LINE           LINE
3519    chr1.26021622.26022407            MIRb       SINE           SINE
3520    chr1.26021622.26022407            MIR3       SINE           SINE
3521    chr1.26035062.26036915             L2c       LINE           LINE
3522    chr1.26043925.26044109            <NA>       <NA>           <NA>
3523    chr1.26045730.26046363       (CTCCGG)n      Other  Simple_repeat
3524    chr1.26049558.26050024         LTR16D1        LTR            LTR
3525    chr1.26054065.26054456            <NA>       <NA>           <NA>
3526    chr1.26060747.26061201            <NA>       <NA>           <NA>
3527    chr1.26065835.26068173             MIR       SINE           SINE
3528    chr1.26065835.26068173            MIRc       SINE           SINE
3529    chr1.26065835.26068173          G-rich      Other Low_complexity
3530    chr1.26065835.26068173             L2c       LINE           LINE
3531    chr1.26065835.26068173          AluSx3       SINE           SINE
3532    chr1.26081659.26082032            <NA>       <NA>           <NA>
3533    chr1.26083207.26083690            <NA>       <NA>           <NA>
3534    chr1.26093564.26095115          LTR10C        LTR            LTR
3535    chr1.26093564.26095115            MIRc       SINE           SINE
3536    chr1.26093564.26095115            MIRb       SINE           SINE
3537    chr1.26097863.26098043       MamRep605      Other           LTR?
3538    chr1.26101816.26102520         MamTip3        DNA            DNA
3539    chr1.26101816.26102520           L1MA8       LINE           LINE
3540    chr1.26101816.26102520             L2b       LINE           LINE
3541    chr1.26103836.26104264      MamRep1879        DNA            DNA
3542    chr1.26103836.26104264           L1MC1       LINE           LINE
3543    chr1.26103836.26104264          AluSx1       SINE           SINE
3544    chr1.26104456.26105262          AluSx1       SINE           SINE
3545    chr1.26104456.26105262           (AC)n      Other  Simple_repeat
3546    chr1.26104456.26105262             MIR       SINE           SINE
3547    chr1.26104456.26105262            MIRc       SINE           SINE
3548    chr1.26104456.26105262          L1MC5a       LINE           LINE
3549    chr1.26110702.26112588          (GCC)n      Other  Simple_repeat
3550    chr1.26110702.26112588          (CGG)n      Other  Simple_repeat
3551    chr1.26110702.26112588      (GCCCCCA)n      Other  Simple_repeat
3552    chr1.26123291.26123675            <NA>       <NA>           <NA>
3553    chr1.26126394.26126735            <NA>       <NA>           <NA>
3554    chr1.26127320.26127922            MIRb       SINE           SINE
3555    chr1.26144911.26145832            MIRc       SINE           SINE
3556    chr1.26144911.26145832          LTR16A        LTR            LTR
3557    chr1.26156545.26156981            <NA>       <NA>           <NA>
3558    chr1.26158942.26159668            <NA>       <NA>           <NA>
3559    chr1.26161079.26162239          (GGC)n      Other  Simple_repeat
3560    chr1.26161079.26162239            MIR3       SINE           SINE
3561    chr1.26164260.26164711          (CGC)n      Other  Simple_repeat
3562    chr1.26168925.26170537       (CGACCC)n      Other  Simple_repeat
3563    chr1.26177023.26177564       Charlie4a        DNA            DNA
3564    chr1.26177023.26177564             MIR       SINE           SINE
3565    chr1.26181702.26182038            MIRb       SINE           SINE
3566    chr1.26190307.26190760            <NA>       <NA>           <NA>
3567    chr1.26201095.26201574            MIR3       SINE           SINE
3568    chr1.26210321.26210907            <NA>       <NA>           <NA>
3569    chr1.26225096.26225901            <NA>       <NA>           <NA>
3570    chr1.26233720.26234973             L2b       LINE           LINE
3571    chr1.26233720.26234973           MER20        DNA            DNA
3572    chr1.26254208.26255012            <NA>       <NA>           <NA>
3573    chr1.26275659.26276585            <NA>       <NA>           <NA>
3574    chr1.26279668.26280644       (CTGACC)n      Other  Simple_repeat
3575    chr1.26279668.26280644        (CCTCC)n      Other  Simple_repeat
3576    chr1.26279668.26280644       (CTGACC)n      Other  Simple_repeat
3577    chr1.26284665.26285338            <NA>       <NA>           <NA>
3578    chr1.26306194.26306885            (G)n      Other  Simple_repeat
3579    chr1.26321181.26322159             L2c       LINE           LINE
3580    chr1.26331420.26331932          L1MC5a       LINE           LINE
3581    chr1.26336116.26337138       (CCGCCC)n      Other  Simple_repeat
3582    chr1.26345658.26346185            <NA>       <NA>           <NA>
3583    chr1.26351414.26352206         (TCAT)n      Other  Simple_repeat
3584    chr1.26351414.26352206              L3       LINE           LINE
3585    chr1.26351414.26352206           (CA)n      Other  Simple_repeat
3586    chr1.26363793.26364235          7SLRNA      Other         srpRNA
3587    chr1.26363793.26364235           MER5A        DNA            DNA
3588    chr1.26363793.26364235            MIR3       SINE           SINE
3589    chr1.26372062.26372316            <NA>       <NA>           <NA>
3590    chr1.26378008.26378767           AluJr       SINE           SINE
3591    chr1.26378008.26378767             L2a       LINE           LINE
3592    chr1.26391546.26391898             L2a       LINE           LINE
3593    chr1.26396347.26396497            AluY       SINE           SINE
3594    chr1.26396347.26396497             MIR       SINE           SINE
3595    chr1.26404601.26405017           AluJo       SINE           SINE
3596    chr1.26404601.26405017             L2a       LINE           LINE
3597    chr1.26405054.26405699            AluY       SINE           SINE
3598    chr1.26405054.26405699          AluSq2       SINE           SINE
3599    chr1.26408620.26408857            <NA>       <NA>           <NA>
3600    chr1.26410906.26411509            <NA>       <NA>           <NA>
3601    chr1.26417079.26417453            <NA>       <NA>           <NA>
3602    chr1.26418810.26419471            MIRc       SINE           SINE
3603    chr1.26431906.26432812            <NA>       <NA>           <NA>
3604    chr1.26450956.26451430           (TG)n      Other  Simple_repeat
3605    chr1.26471566.26473557          (GCC)n      Other  Simple_repeat
3606    chr1.26500093.26501688            <NA>       <NA>           <NA>
3607    chr1.26510525.26511092         Tigger1        DNA            DNA
3608    chr1.26510525.26511092           AluJo       SINE           SINE
3609    chr1.26510525.26511092           AluSz       SINE           SINE
3610    chr1.26521652.26521933           AluSz       SINE           SINE
3611    chr1.26521652.26521933             L2a       LINE           LINE
3612    chr1.26529662.26530627       (GCGGCG)n      Other  Simple_repeat
3613    chr1.26531019.26531950            <NA>       <NA>           <NA>
3614    chr1.26541970.26542536         (TGTG)n      Other  Simple_repeat
3615    chr1.26541970.26542536       (TGTGCA)n      Other  Simple_repeat
3616    chr1.26541970.26542536         (TGTG)n      Other  Simple_repeat
3617    chr1.26620129.26621660        MIR1_Amn       SINE           SINE
3618    chr1.26633752.26634158           AluSx       SINE           SINE
3619    chr1.26633752.26634158       MER41-int        LTR            LTR
3620    chr1.26633752.26634158           AluSp       SINE           SINE
3621    chr1.26635592.26636184       MER41-int        LTR            LTR
3622    chr1.26635592.26636184       MER41-int        LTR            LTR
3623    chr1.26635592.26636184          MER41B        LTR            LTR
3624    chr1.26635592.26636184          FLAM_C       SINE           SINE
3625    chr1.26666950.26667189            L1M5       LINE           LINE
3626    chr1.26668192.26668594           L1MA3       LINE           LINE
3627    chr1.26668192.26668594          AluSq2       SINE           SINE
3628    chr1.26668192.26668594           L1MA3       LINE           LINE
3629    chr1.26677388.26677973            <NA>       <NA>           <NA>
3630    chr1.26685270.26685610            (A)n      Other  Simple_repeat
3631    chr1.26685270.26685610           AluSx       SINE           SINE
3632    chr1.26687826.26688150           AluJb       SINE           SINE
3633    chr1.26692248.26693409            <NA>       <NA>           <NA>
3634    chr1.26695324.26696234         (CCGC)n      Other  Simple_repeat
3635    chr1.26695324.26696234         (CCCT)n      Other  Simple_repeat
3636    chr1.26695324.26696234          (GCC)n      Other  Simple_repeat
3637    chr1.26696693.26697457          (CGG)n      Other  Simple_repeat
3638    chr1.26696693.26697457          (CCT)n      Other  Simple_repeat
3639    chr1.26696693.26697457       (CCCCAC)n      Other  Simple_repeat
3640    chr1.26696693.26697457          (GGC)n      Other  Simple_repeat
3641    chr1.26697947.26698518            <NA>       <NA>           <NA>
3642    chr1.26705774.26706105            <NA>       <NA>           <NA>
3643    chr1.26723237.26723975            <NA>       <NA>           <NA>
3644    chr1.26726847.26727065            <NA>       <NA>           <NA>
3645    chr1.26731026.26731691            <NA>       <NA>           <NA>
3646    chr1.26744072.26744811            <NA>       <NA>           <NA>
3647    chr1.26753220.26753647            <NA>       <NA>           <NA>
3648    chr1.26768768.26769178          A-rich      Other Low_complexity
3649    chr1.26771440.26772510            <NA>       <NA>           <NA>
3650    chr1.26772817.26773131            <NA>       <NA>           <NA>
3651    chr1.26782550.26782875             L2a       LINE           LINE
3652    chr1.26784030.26784304            <NA>       <NA>           <NA>
3653    chr1.26786688.26787335            <NA>       <NA>           <NA>
3654    chr1.26787405.26788672             L2b       LINE           LINE
3655    chr1.26787405.26788672         MamRTE1       LINE           LINE
3656    chr1.26787405.26788672            MIRb       SINE           SINE
3657    chr1.26788946.26789461            <NA>       <NA>           <NA>
3658    chr1.26799570.26800356            <NA>       <NA>           <NA>
3659    chr1.26805716.26806207      MLT1J2-int        LTR            LTR
3660    chr1.26805716.26806207           AluJb       SINE           SINE
3661    chr1.26805716.26806207           AluJb       SINE           SINE
3662    chr1.26809998.26810375          AluSx4       SINE           SINE
3663    chr1.26809998.26810375           LTR50        LTR            LTR
3664    chr1.26809998.26810375          AluSq2       SINE           SINE
3665    chr1.26825477.26825734         MLT1E1A        LTR            LTR
3666    chr1.26825477.26825734         MLT1E1A        LTR            LTR
3667    chr1.26826222.26827284             L2a       LINE           LINE
3668    chr1.26826222.26827284          (GGC)n      Other  Simple_repeat
3669    chr1.26826222.26827284          (CGC)n      Other  Simple_repeat
3670    chr1.26826222.26827284       (GCAGCG)n      Other  Simple_repeat
3671    chr1.26833608.26834161            <NA>       <NA>           <NA>
3672    chr1.26838748.26839414             L2b       LINE           LINE
3673    chr1.26853160.26853675            <NA>       <NA>           <NA>
3674    chr1.26864458.26865580            MIR3       SINE           SINE
3675    chr1.26872445.26872657            <NA>       <NA>           <NA>
3676    chr1.26877906.26878558          AluSg7       SINE           SINE
3677    chr1.26877906.26878558          MER113        DNA            DNA
3678    chr1.26877906.26878558           AluSx       SINE           SINE
3679    chr1.26887300.26887534            <NA>       <NA>           <NA>
3680    chr1.26889595.26890600             MIR       SINE           SINE
3681    chr1.26899462.26900603            <NA>       <NA>           <NA>
3682    chr1.26907483.26908020             L2c       LINE           LINE
3683    chr1.26907483.26908020           AluSq       SINE           SINE
3684    chr1.26913793.26914574            <NA>       <NA>           <NA>
3685    chr1.26921306.26922442          MER45A        DNA            DNA
3686    chr1.26921306.26922442            MIRc       SINE           SINE
3687    chr1.26938078.26938369            <NA>       <NA>           <NA>
3688    chr1.26940438.26940776           AluSp       SINE           SINE
3689    chr1.26940438.26940776          AluSx3       SINE           SINE
3690    chr1.26959751.26960270            <NA>       <NA>           <NA>
3691    chr1.26960429.26960742             L2b       LINE           LINE
3692    chr1.26961884.26962104          L1ME3F       LINE           LINE
3693    chr1.26966878.26967316              L2       LINE           LINE
3694    chr1.26966878.26967316            MIRb       SINE           SINE
3695    chr1.26966878.26967316           AluSx       SINE           SINE
3696    chr1.26972180.26972651            <NA>       <NA>           <NA>
3697    chr1.26990635.26991009             L2a       LINE           LINE
3698    chr1.26990635.26991009            MIRb       SINE           SINE
3699    chr1.26990635.26991009            MIRb       SINE           SINE
3700    chr1.26993079.26994301            MIR3       SINE           SINE
3701    chr1.26993079.26994301            (G)n      Other  Simple_repeat
3702    chr1.26993079.26994301       (CCCCGA)n      Other  Simple_repeat
3703    chr1.26994429.26995030            <NA>       <NA>           <NA>
3704    chr1.26997611.26998048            <NA>       <NA>           <NA>
3705    chr1.26999267.27000001           AluSq       SINE           SINE
3706    chr1.27004367.27005115            <NA>       <NA>           <NA>
3707    chr1.27009999.27010165            MIR3       SINE           SINE
3708    chr1.27010748.27011361             L2b       LINE           LINE
3709    chr1.27012579.27013374        (CCGCT)n      Other  Simple_repeat
3710    chr1.27012579.27013374            MIR3       SINE           SINE
3711    chr1.27012579.27013374            AluY       SINE           SINE
3712    chr1.27021364.27021999             L2a       LINE           LINE
3713    chr1.27021364.27021999          MER41E        LTR            LTR
3714    chr1.27021364.27021999          MER61B        LTR            LTR
3715    chr1.27027133.27027500             L2a       LINE           LINE
3716    chr1.27031547.27031968         (CCCT)n      Other  Simple_repeat
3717    chr1.27044464.27044977          AluSx1       SINE           SINE
3718    chr1.27044464.27044977             MIR       SINE           SINE
3719    chr1.27045870.27046163            <NA>       <NA>           <NA>
3720    chr1.27061908.27062306           AluSz       SINE           SINE
3721    chr1.27070747.27071478      ERVL-E-int        LTR            LTR
3722    chr1.27070747.27071478      LTR105_Mam        LTR            LTR
3723    chr1.27074133.27074767           AluJo       SINE           SINE
3724    chr1.27074133.27074767      ERVL-E-int        LTR            LTR
3725    chr1.27086418.27087167         MLT1E1A        LTR            LTR
3726    chr1.27086418.27087167           (CA)n      Other  Simple_repeat
3727    chr1.27086418.27087167            MIRc       SINE           SINE
3728    chr1.27086418.27087167           AluSz       SINE           SINE
3729    chr1.27090858.27091353      ERVL-E-int        LTR            LTR
3730    chr1.27097478.27097798        Tigger4b        DNA            DNA
3731    chr1.27099186.27100136         GA-rich      Other Low_complexity
3732    chr1.27099186.27100136       (GGCAGG)n      Other  Simple_repeat
3733    chr1.27100616.27101213            <NA>       <NA>           <NA>
3734    chr1.27102465.27103083         (TGCC)n      Other  Simple_repeat
3735    chr1.27106626.27107089            MIRc       SINE           SINE
3736    chr1.27111877.27112549            MIRc       SINE           SINE
3737    chr1.27111877.27112549            MIRb       SINE           SINE
3738    chr1.27117677.27118259            MIRb       SINE           SINE
3739    chr1.27117677.27118259             L2b       LINE           LINE
3740    chr1.27118689.27119424            MIR3       SINE           SINE
3741    chr1.27118689.27119424           (AC)n      Other  Simple_repeat
3742    chr1.27122506.27123053          G-rich      Other Low_complexity
3743    chr1.27132384.27132975            MIR3       SINE           SINE
3744    chr1.27132384.27132975            MIRb       SINE           SINE
3745    chr1.27139010.27139539            MIRb       SINE           SINE
3746    chr1.27145202.27146291             L2c       LINE           LINE
3747    chr1.27152609.27153097            <NA>       <NA>           <NA>
3748    chr1.27153490.27155630      (GGCTGTG)n      Other  Simple_repeat
3749    chr1.27153490.27155630       (GCTCCA)n      Other  Simple_repeat
3750    chr1.27153490.27155630            (A)n      Other  Simple_repeat
3751    chr1.27153490.27155630             MIR       SINE           SINE
3752    chr1.27153490.27155630             MIR       SINE           SINE
3753    chr1.27165503.27165761          FLAM_C       SINE           SINE
3754    chr1.27192620.27193048           AluSg       SINE           SINE
3755    chr1.27192620.27193048           AluJo       SINE           SINE
3756    chr1.27197848.27198386            MIRc       SINE           SINE
3757    chr1.27197848.27198386            MIR3       SINE           SINE
3758    chr1.27218898.27219009           AluJb       SINE           SINE
3759    chr1.27233872.27235046       (CGCAGG)n      Other  Simple_repeat
3760    chr1.27233872.27235046           (GT)n      Other  Simple_repeat
3761    chr1.27235220.27235724           (TC)n      Other  Simple_repeat
3762    chr1.27235220.27235724           (TG)n      Other  Simple_repeat
3763    chr1.27284594.27285165           AluSx       SINE           SINE
3764    chr1.27292036.27292446            MIRb       SINE           SINE
3765    chr1.27296802.27297005       (CCCAGC)n      Other  Simple_repeat
3766    chr1.27299360.27300124             L2c       LINE           LINE
3767    chr1.27300625.27301301            <NA>       <NA>           <NA>
3768    chr1.27306792.27307234            <NA>       <NA>           <NA>
3769    chr1.27321914.27322826             L2b       LINE           LINE
3770    chr1.27321914.27322826            MIR3       SINE           SINE
3771    chr1.27332653.27333287             L2c       LINE           LINE
3772    chr1.27341646.27343598            MIRb       SINE           SINE
3773    chr1.27341646.27343598           (TG)n      Other  Simple_repeat
3774    chr1.27347234.27347611             L2b       LINE           LINE
3775    chr1.27349345.27350106            <NA>       <NA>           <NA>
3776    chr1.27351064.27351823             L2c       LINE           LINE
3777    chr1.27357359.27357907       (CCTGCT)n      Other  Simple_repeat
3778    chr1.27360354.27360827            <NA>       <NA>           <NA>
3779    chr1.27365311.27367257         (ATGT)n      Other  Simple_repeat
3780    chr1.27372576.27372933          AluSq2       SINE           SINE
3781    chr1.27380370.27380792            MIR3       SINE           SINE
3782    chr1.27381395.27381622            MIRb       SINE           SINE
3783    chr1.27383101.27383432          G-rich      Other Low_complexity
3784    chr1.27391549.27392050            <NA>       <NA>           <NA>
3785    chr1.27392178.27392971        (GCCGC)n      Other  Simple_repeat
3786    chr1.27395466.27395848            <NA>       <NA>           <NA>
3787    chr1.27402418.27402968         MamTip2        DNA            DNA
3788    chr1.27402418.27402968            MIRb       SINE           SINE
3789    chr1.27404974.27405459            <NA>       <NA>           <NA>
3790    chr1.27416400.27416913       Tigger19a        DNA            DNA
3791    chr1.27418260.27418978            <NA>       <NA>           <NA>
3792    chr1.27427227.27427481            <NA>       <NA>           <NA>
3793    chr1.27428082.27429180            (T)n      Other  Simple_repeat
3794    chr1.27434192.27434641              L3       LINE           LINE
3795    chr1.27434192.27434641            MIR3       SINE           SINE
3796    chr1.27436092.27436989           AluJo       SINE           SINE
3797    chr1.27438506.27438961            <NA>       <NA>           <NA>
3798    chr1.27448881.27449479             L2c       LINE           LINE
3799    chr1.27448881.27449479           AluSz       SINE           SINE
3800    chr1.27451015.27451727          FLAM_C       SINE           SINE
3801    chr1.27451015.27451727              L2       LINE           LINE
3802    chr1.27455309.27455669             L2c       LINE           LINE
3803    chr1.27489655.27490801            MIR3       SINE           SINE
3804    chr1.27489655.27490801            MIRb       SINE           SINE
3805    chr1.27496659.27497136           (TC)n      Other  Simple_repeat
3806    chr1.27496659.27497136             L2a       LINE           LINE
3807    chr1.27504112.27505587           (CT)n      Other  Simple_repeat
3808    chr1.27504112.27505587             MIR       SINE           SINE
3809    chr1.27504112.27505587            MIRc       SINE           SINE
3810    chr1.27504112.27505587            MIRc       SINE           SINE
3811    chr1.27517859.27518689          AluSx3       SINE           SINE
3812    chr1.27517859.27518689             L2c       LINE           LINE
3813    chr1.27517859.27518689             L2b       LINE           LINE
3814    chr1.27517859.27518689          G-rich      Other Low_complexity
3815    chr1.27519309.27519939         MamTip2        DNA            DNA
3816    chr1.27525419.27526217             L2b       LINE           LINE
3817    chr1.27527073.27527587            <NA>       <NA>           <NA>
3818    chr1.27527825.27529426       (GCCCTC)n      Other  Simple_repeat
3819    chr1.27527825.27529426         (CCTC)n      Other  Simple_repeat
3820    chr1.27536575.27537230            <NA>       <NA>           <NA>
3821    chr1.27538874.27539035            MIR3       SINE           SINE
3822    chr1.27540368.27540915            (A)n      Other  Simple_repeat
3823    chr1.27540368.27540915             L2c       LINE           LINE
3824    chr1.27542211.27543423            MIRb       SINE           SINE
3825    chr1.27551166.27551826            <NA>       <NA>           <NA>
3826    chr1.27556737.27558146            <NA>       <NA>           <NA>
3827    chr1.27560421.27560925           (GT)n      Other  Simple_repeat
3828    chr1.27563402.27564239            MIR3       SINE           SINE
3829    chr1.27568062.27568923            <NA>       <NA>           <NA>
3830    chr1.27569076.27569673             MIR       SINE           SINE
3831    chr1.27569076.27569673            MIRb       SINE           SINE
3832    chr1.27572915.27573256            MIR3       SINE           SINE
3833    chr1.27574789.27576238          (CCG)n      Other  Simple_repeat
3834    chr1.27574789.27576238          G-rich      Other Low_complexity
3835    chr1.27574789.27576238            MIR3       SINE           SINE
3836    chr1.27589319.27589692       (TCTGTG)n      Other  Simple_repeat
3837    chr1.27589319.27589692           (TG)n      Other  Simple_repeat
3838    chr1.27589925.27590339            <NA>       <NA>           <NA>
3839    chr1.27594551.27595406         GA-rich      Other Low_complexity
3840    chr1.27599163.27599546       (CAGGGC)n      Other  Simple_repeat
3841    chr1.27599163.27599546            MIR3       SINE           SINE
3842    chr1.27601871.27602613        (CCAGC)n      Other  Simple_repeat
3843    chr1.27601871.27602613       (TCCCGC)n      Other  Simple_repeat
3844    chr1.27603288.27604318         (CTCT)n      Other  Simple_repeat
3845    chr1.27603288.27604318         (TCCC)n      Other  Simple_repeat
3846    chr1.27603288.27604318       (CCTCGC)n      Other  Simple_repeat
3847    chr1.27603288.27604318          G-rich      Other Low_complexity
3848    chr1.27606350.27607084            MIRc       SINE           SINE
3849    chr1.27612417.27612813            MIR3       SINE           SINE
3850    chr1.27621465.27621830            MIRb       SINE           SINE
3851    chr1.27628698.27628989            <NA>       <NA>           <NA>
3852    chr1.27635516.27635802           AluJo       SINE           SINE
3853    chr1.27643821.27644290              L3       LINE           LINE
3854    chr1.27643821.27644290            MIR3       SINE           SINE
3855    chr1.27648511.27648901            MIRb       SINE           SINE
3856    chr1.27650599.27651193         LTR16E1        LTR            LTR
3857    chr1.27650599.27651193            MIRb       SINE           SINE
3858    chr1.27650599.27651193             L2a       LINE           LINE
3859    chr1.27655264.27655523             L2a       LINE           LINE
3860    chr1.27656050.27656399            MIRb       SINE           SINE
3861    chr1.27659312.27659932            MIRc       SINE           SINE
3862    chr1.27659312.27659932            MIR3       SINE           SINE
3863    chr1.27660061.27660364            <NA>       <NA>           <NA>
3864    chr1.27662980.27663613            <NA>       <NA>           <NA>
3865    chr1.27671994.27672992      (TCTGCAC)n      Other  Simple_repeat
3866    chr1.27671994.27672992            MIRb       SINE           SINE
3867    chr1.27671994.27672992      ERVL-E-int        LTR            LTR
3868    chr1.27688009.27688239           LTR32        LTR            LTR
3869    chr1.27688009.27688239       MER4B-int        LTR            LTR
3870    chr1.27689540.27689994       MER21-int        LTR            LTR
3871    chr1.27713426.27713712          LTR19B        LTR            LTR
3872    chr1.27725441.27726663         (GCCC)n      Other  Simple_repeat
3873    chr1.27725441.27726663          G-rich      Other Low_complexity
3874    chr1.27772803.27773946       (CAGCCC)n      Other  Simple_repeat
3875    chr1.27778155.27778380            <NA>       <NA>           <NA>
3876    chr1.27785832.27786286             L2a       LINE           LINE
3877    chr1.27789481.27789975            <NA>       <NA>           <NA>
3878    chr1.27793188.27793577            <NA>       <NA>           <NA>
3879    chr1.27817231.27817673       MER21-int        LTR            LTR
3880    chr1.27817231.27817673       MER21-int        LTR            LTR
3881    chr1.27830444.27831595           AluSz       SINE           SINE
3882    chr1.27830444.27831595             L2c       LINE           LINE
3883    chr1.27830444.27831595             L2b       LINE           LINE
3884    chr1.27851657.27852232           SVA_F Retroposon     Retroposon
3885    chr1.27857964.27858701            MIRb       SINE           SINE
3886    chr1.27863209.27863528            <NA>       <NA>           <NA>
3887    chr1.27872394.27873559          G-rich      Other Low_complexity
3888    chr1.27872394.27873559            MIRb       SINE           SINE
3889    chr1.27872394.27873559             L2b       LINE           LINE
3890    chr1.27872394.27873559             L2b       LINE           LINE
3891    chr1.27872394.27873559       (AGGTGG)n      Other  Simple_repeat
3892    chr1.27914136.27915160              L3       LINE           LINE
3893    chr1.27933850.27934113           AluJr       SINE           SINE
3894    chr1.27933850.27934113           AluJb       SINE           SINE
3895    chr1.27934833.27935513             L2c       LINE           LINE
3896    chr1.27959463.27960450            <NA>       <NA>           <NA>
3897    chr1.27966653.27967142            <NA>       <NA>           <NA>
3898    chr1.27968606.27969051             L2a       LINE           LINE
3899    chr1.27971728.27972032            <NA>       <NA>           <NA>
3900    chr1.27991110.27991557      Charlie10b        DNA            DNA
3901    chr1.27991110.27991557            MIR3       SINE           SINE
3902    chr1.27993813.27994641          L1ME4a       LINE           LINE
3903    chr1.27993813.27994641           MLT1F        LTR            LTR
3904    chr1.27993813.27994641           AluSx       SINE           SINE
3905    chr1.28028943.28029749           AluJr       SINE           SINE
3906    chr1.28028943.28029749       Tigger15a        DNA            DNA
3907    chr1.28028943.28029749       Tigger15a        DNA            DNA
3908    chr1.28028943.28029749           AluSq       SINE           SINE
3909    chr1.28031232.28031709            <NA>       <NA>           <NA>
3910    chr1.28065648.28066231          MER44C        DNA            DNA
3911    chr1.28065648.28066231           AluSg       SINE           SINE
3912    chr1.28065648.28066231          MER44C        DNA            DNA
3913    chr1.28075981.28076332            <NA>       <NA>           <NA>
3914    chr1.28078192.28079444             MIR       SINE           SINE
3915    chr1.28078192.28079444          AluSz6       SINE           SINE
3916    chr1.28078192.28079444             MIR       SINE           SINE
3917    chr1.28078192.28079444             MIR       SINE           SINE
3918    chr1.28087855.28089083           AluSp       SINE           SINE
3919    chr1.28091299.28091461             L2a       LINE           LINE
3920    chr1.28098963.28099533           AluSx       SINE           SINE
3921    chr1.28098963.28099533       Charlie1b        DNA            DNA
3922    chr1.28104929.28105683            MIRb       SINE           SINE
3923    chr1.28104929.28105683             MIR       SINE           SINE
3924    chr1.28129106.28129585            <NA>       <NA>           <NA>
3925    chr1.28153154.28153472           AluJo       SINE           SINE
3926    chr1.28153154.28153472           AluJb       SINE           SINE
3927    chr1.28172340.28173094            MIRb       SINE           SINE
3928    chr1.28172340.28173094             L2b       LINE           LINE
3929    chr1.28172340.28173094            MIRc       SINE           SINE
3930    chr1.28172340.28173094           AluJr       SINE           SINE
3931    chr1.28173741.28174078           (CA)n      Other  Simple_repeat
3932    chr1.28173741.28174078           (CA)n      Other  Simple_repeat
3933    chr1.28190424.28191494          L1ME3C       LINE           LINE
3934    chr1.28190424.28191494            L1M5       LINE           LINE
3935    chr1.28190424.28191494           (TC)n      Other  Simple_repeat
3936    chr1.28190424.28191494            MIRb       SINE           SINE
3937    chr1.28190424.28191494       (TCCTCT)n      Other  Simple_repeat
3938    chr1.28190424.28191494          FLAM_C       SINE           SINE
3939    chr1.28208815.28209205         (ATAA)n      Other  Simple_repeat
3940    chr1.28230141.28230312            <NA>       <NA>           <NA>
3941    chr1.28232375.28233140             L2c       LINE           LINE
3942    chr1.28232375.28233140            MIRb       SINE           SINE
3943    chr1.28235707.28237142         LTR16D1        LTR            LTR
3944    chr1.28239094.28239320          FLAM_A       SINE           SINE
3945    chr1.28244918.28245103            <NA>       <NA>           <NA>
3946    chr1.28246944.28247553          AluSx1       SINE           SINE
3947    chr1.28246944.28247553         (GAAA)n      Other  Simple_repeat
3948    chr1.28248331.28249254            MIR3       SINE           SINE
3949    chr1.28248331.28249254            MIRc       SINE           SINE
3950    chr1.28259086.28260807       (CCCCTC)n      Other  Simple_repeat
3951    chr1.28259086.28260807        (CCTCC)n      Other  Simple_repeat
3952    chr1.28266995.28267278            <NA>       <NA>           <NA>
3953    chr1.28273199.28273790            MIRb       SINE           SINE
3954    chr1.28278761.28279332            MIRc       SINE           SINE
3955    chr1.28278761.28279332            MIRb       SINE           SINE
3956    chr1.28280521.28280975            <NA>       <NA>           <NA>
3957    chr1.28296757.28297282             MIR       SINE           SINE
3958    chr1.28313922.28314291            <NA>       <NA>           <NA>
3959    chr1.28328698.28329768           AluSz       SINE           SINE
3960    chr1.28328698.28329768           AluSp       SINE           SINE
3961    chr1.28328698.28329768          AluJr4       SINE           SINE
3962    chr1.28343474.28343849           AluSx       SINE           SINE
3963    chr1.28346196.28346722          AluSx1       SINE           SINE
3964    chr1.28346196.28346722           MARNA        DNA            DNA
3965    chr1.28346196.28346722           AluJr       SINE           SINE
3966    chr1.28351643.28352044          AluSc8       SINE           SINE
3967    chr1.28351643.28352044            HAL1       LINE           LINE
3968    chr1.28351643.28352044            (T)n      Other  Simple_repeat
3969    chr1.28351643.28352044            AluY       SINE           SINE
3970    chr1.28353583.28353891            MIRb       SINE           SINE
3971    chr1.28353583.28353891           AluSx       SINE           SINE
3972    chr1.28354060.28354708             L2a       LINE           LINE
3973    chr1.28354060.28354708             MIR       SINE           SINE
3974    chr1.28354060.28354708             L2b       LINE           LINE
3975    chr1.28359758.28359953            <NA>       <NA>           <NA>
3976    chr1.28369409.28370600            <NA>       <NA>           <NA>
3977    chr1.28391945.28392548           L1MA6       LINE           LINE
3978    chr1.28391945.28392548          MER44C        DNA            DNA
3979    chr1.28391945.28392548           AluJb       SINE           SINE
3980    chr1.28400673.28401184           AluSx       SINE           SINE
3981    chr1.28400673.28401184           LTR38        LTR            LTR
3982    chr1.28403191.28403525          LTR16A        LTR            LTR
3983    chr1.28416471.28416783          (GTA)n      Other  Simple_repeat
3984    chr1.28416471.28416783            L1M5       LINE           LINE
3985    chr1.28417454.28417865          MER44B        DNA            DNA
3986    chr1.28417454.28417865           AluJo       SINE           SINE
3987    chr1.28433845.28434553          AluSx1       SINE           SINE
3988    chr1.28433845.28434553            MIR3       SINE           SINE
3989    chr1.28433845.28434553          AluSc8       SINE           SINE
3990    chr1.28437423.28438441           AluJb       SINE           SINE
3991    chr1.28437423.28438441          MLT1A0        LTR            LTR
3992    chr1.28456149.28456850            MSTA        LTR            LTR
3993    chr1.28456149.28456850           AluJb       SINE           SINE
3994    chr1.28456149.28456850           AluJb       SINE           SINE
3995    chr1.28458266.28458835           AluJb       SINE           SINE
3996    chr1.28471580.28471909             L2c       LINE           LINE
3997    chr1.28500992.28501314          AluSx1       SINE           SINE
3998    chr1.28505563.28506939          AluSz6       SINE           SINE
3999    chr1.28505563.28506939           AluSx       SINE           SINE
4000    chr1.28505563.28506939           AluSg       SINE           SINE
4001    chr1.28507085.28507721             U17      Other          snRNA
4002    chr1.28507085.28507721           AluSg       SINE           SINE
4003    chr1.28517685.28519284              L2       LINE           LINE
4004    chr1.28517685.28519284         (GCGG)n      Other  Simple_repeat
4005    chr1.28517685.28519284             L2b       LINE           LINE
4006    chr1.28537704.28538245            <NA>       <NA>           <NA>
4007    chr1.28544451.28545132            AluY       SINE           SINE
4008    chr1.28544451.28545132           LTR13        LTR            LTR
4009    chr1.28552589.28553914           AluSc       SINE           SINE
4010    chr1.28552589.28553914        (GCCCC)n      Other  Simple_repeat
4011    chr1.28552589.28553914             MIR       SINE           SINE
4012    chr1.28581059.28582373            MIRb       SINE           SINE
4013    chr1.28581059.28582373            MIRb       SINE           SINE
4014    chr1.28590084.28590424           AluSc       SINE           SINE
4015    chr1.28590084.28590424             MIR       SINE           SINE
4016    chr1.28591563.28592156            MIRc       SINE           SINE
4017    chr1.28591563.28592156             L2c       LINE           LINE
4018    chr1.28591563.28592156       (GGCTGG)n      Other  Simple_repeat
4019    chr1.28592175.28593125       (GGCTGG)n      Other  Simple_repeat
4020    chr1.28592175.28593125            MIRb       SINE           SINE
4021    chr1.28592175.28593125          G-rich      Other Low_complexity
4022    chr1.28601526.28602339           AluSz       SINE           SINE
4023    chr1.28601526.28602339             L2c       LINE           LINE
4024    chr1.28601526.28602339            MIR3       SINE           SINE
4025    chr1.28604572.28605187         MamRTE1       LINE           LINE
4026    chr1.28606749.28607097            MIRb       SINE           SINE
4027    chr1.28606749.28607097             L2c       LINE           LINE
4028    chr1.28642394.28643616            MIRb       SINE           SINE
4029    chr1.28646145.28646348           AluJo       SINE           SINE
4030    chr1.28648023.28649365          AluJr4       SINE           SINE
4031    chr1.28648023.28649365           AluSc       SINE           SINE
4032    chr1.28648023.28649365            L1M4       LINE           LINE
4033    chr1.28653942.28654449           AluSx       SINE           SINE
4034    chr1.28653942.28654449       HERVL-int        LTR            LTR
4035    chr1.28668280.28669939            MIR3       SINE           SINE
4036    chr1.28668280.28669939         (CGCC)n      Other  Simple_repeat
4037    chr1.28668280.28669939          G-rich      Other Low_complexity
4038    chr1.28682794.28683169          MER63A        DNA            DNA
4039    chr1.28718720.28719214            <NA>       <NA>           <NA>
4040    chr1.28736169.28738046         (TTCC)n      Other  Simple_repeat
4041    chr1.28750886.28752354           AluSz       SINE           SINE
4042    chr1.28750886.28752354           AluSx       SINE           SINE
4043    chr1.28750886.28752354             L2c       LINE           LINE
4044    chr1.28750886.28752354            MIRc       SINE           SINE
4045    chr1.28750886.28752354          MER63D        DNA            DNA
4046    chr1.28750886.28752354          AluSx4       SINE           SINE
4047    chr1.28761177.28761496           AluJb       SINE           SINE
4048    chr1.28761177.28761496           AluSp       SINE           SINE
4049    chr1.28775124.28775537            <NA>       <NA>           <NA>
4050    chr1.28784926.28785752             L2b       LINE           LINE
4051    chr1.28784926.28785752         GA-rich      Other Low_complexity
4052    chr1.28784926.28785752          AluYf1       SINE           SINE
4053    chr1.28792748.28793246           AluJo       SINE           SINE
4054    chr1.28796782.28797177            <NA>       <NA>           <NA>
4055    chr1.28811811.28812688            MIRb       SINE           SINE
4056    chr1.28811811.28812688          G-rich      Other Low_complexity
4057    chr1.28815394.28815765           AluJb       SINE           SINE
4058    chr1.28815394.28815765         (TGAA)n      Other  Simple_repeat
4059    chr1.28828431.28828737         Tigger1        DNA            DNA
4060    chr1.28828431.28828737            FRAM       SINE           SINE
4061    chr1.28828431.28828737           AluSx       SINE           SINE
4062    chr1.28831397.28831816           AluSc       SINE           SINE
4063    chr1.28831397.28831816           AluJb       SINE           SINE
4064    chr1.28848289.28848780           MLT1A        LTR            LTR
4065    chr1.28848289.28848780             L2c       LINE           LINE
4066    chr1.28848289.28848780             MIR       SINE           SINE
4067    chr1.28860126.28860851          AluSx1       SINE           SINE
4068    chr1.28860126.28860851          MLT1J2        LTR            LTR
4069    chr1.28860126.28860851            MIRb       SINE           SINE
4070    chr1.28860126.28860851            MIRc       SINE           SINE
4071    chr1.28862317.28863903             MIR       SINE           SINE
4072    chr1.28862317.28863903             L2c       LINE           LINE
4073    chr1.28877071.28877601       (CACATA)n      Other  Simple_repeat
4074    chr1.28882043.28882486            MIRc       SINE           SINE
4075    chr1.28884646.28885279           (AC)n      Other  Simple_repeat
4076    chr1.28886815.28888430        AmnSINE2       SINE           SINE
4077    chr1.28886815.28888430        (CCCGG)n      Other  Simple_repeat
4078    chr1.28886815.28888430      (TCTGTCG)n      Other  Simple_repeat
4079    chr1.28914115.28915607            MIR3       SINE           SINE
4080    chr1.28914115.28915607         (TCGC)n      Other  Simple_repeat
4081    chr1.28914115.28915607          (GGC)n      Other  Simple_repeat
4082    chr1.28972221.28972835           AluJb       SINE           SINE
4083    chr1.28972221.28972835           AluJo       SINE           SINE
4084    chr1.28978819.28979246         Ricksha        DNA            DNA
4085    chr1.28983627.28983922           LTR1D        LTR            LTR
4086    chr1.28985292.28985891             L2a       LINE           LINE
4087    chr1.28985292.28985891             HY3      Other          scRNA
4088    chr1.28985292.28985891            L1HS       LINE           LINE
4089    chr1.29033926.29034261            MIRc       SINE           SINE
4090    chr1.29033926.29034261             L2b       LINE           LINE
4091    chr1.29043403.29043976            MER3        DNA            DNA
4092    chr1.29043403.29043976             L2a       LINE           LINE
4093    chr1.29090924.29091751             L2b       LINE           LINE
4094    chr1.29090924.29091751            MIRc       SINE           SINE
4095    chr1.29113242.29113984            MIRb       SINE           SINE
4096    chr1.29122199.29123767            <NA>       <NA>           <NA>
4097    chr1.29123877.29125030        (GCCCC)n      Other  Simple_repeat
4098    chr1.29123877.29125030      (CGCCAGA)n      Other  Simple_repeat
4099    chr1.29133735.29134362          G-rich      Other Low_complexity
4100    chr1.29145699.29146260            <NA>       <NA>           <NA>
4101    chr1.29156549.29157467             MIR       SINE           SINE
4102    chr1.29156549.29157467           LTR14        LTR            LTR
4103    chr1.29180897.29182361          (GGC)n      Other  Simple_repeat
4104    chr1.29180897.29182361            MIRb       SINE           SINE
4105    chr1.29196875.29197943           AluJb       SINE           SINE
4106    chr1.29196875.29197943           MER5A        DNA            DNA
4107    chr1.29196875.29197943            MIRc       SINE           SINE
4108    chr1.29196875.29197943            MIRb       SINE           SINE
4109    chr1.29202357.29203276            MIRc       SINE           SINE
4110    chr1.29208359.29208767            MIRc       SINE           SINE
4111    chr1.29208359.29208767            MIR3       SINE           SINE
4112    chr1.29208895.29209836             L2c       LINE           LINE
4113    chr1.29208895.29209836          MER112        DNA            DNA
4114    chr1.29208895.29209836             L2c       LINE           LINE
4115    chr1.29208895.29209836            MIRb       SINE           SINE
4116    chr1.29210258.29210504            AluY       SINE           SINE
4117    chr1.29210258.29210504             L2b       LINE           LINE
4118    chr1.29227108.29227795           AluSx       SINE           SINE
4119    chr1.29230575.29231276            MIRb       SINE           SINE
4120    chr1.29236179.29238589              L3       LINE           LINE
4121    chr1.29236179.29238589      (GTGTTGT)n      Other  Simple_repeat
4122    chr1.29236179.29238589           (GT)n      Other  Simple_repeat
4123    chr1.29236179.29238589           (GT)n      Other  Simple_repeat
4124    chr1.29239135.29239523            <NA>       <NA>           <NA>
4125    chr1.29245711.29246231            <NA>       <NA>           <NA>
4126    chr1.29249193.29249654       (CACACA)n      Other  Simple_repeat
4127    chr1.29258505.29258940            <NA>       <NA>           <NA>
4128    chr1.29259341.29260344          G-rich      Other Low_complexity
4129    chr1.29271452.29272540         MER102b        DNA            DNA
4130    chr1.29282947.29283682            <NA>       <NA>           <NA>
4131    chr1.29290426.29291030            MIRb       SINE           SINE
4132    chr1.29290426.29291030              L3       LINE           LINE
4133    chr1.29302386.29302529        Tigger3b        DNA            DNA
4134    chr1.29306048.29306753            MIRb       SINE           SINE
4135    chr1.29306048.29306753             L2b       LINE           LINE
4136    chr1.29324950.29325242            <NA>       <NA>           <NA>
4137    chr1.29332151.29332721          LTR41C        LTR            LTR
4138    chr1.29415407.29415684            <NA>       <NA>           <NA>
4139    chr1.29425569.29425988            <NA>       <NA>           <NA>
4140    chr1.29426732.29427339            MIRb       SINE           SINE
4141    chr1.29453404.29453774             L2b       LINE           LINE
4142    chr1.29453404.29453774          (TCC)n      Other  Simple_repeat
4143    chr1.29498871.29499229             L3b       LINE           LINE
4144    chr1.29498871.29499229            MIRb       SINE           SINE
4145    chr1.29513366.29513776           MLT1K        LTR            LTR
4146    chr1.29513366.29513776           MLT1K        LTR            LTR
4147    chr1.29550140.29550640          G-rich      Other Low_complexity
4148    chr1.29550140.29550640           MLT1I        LTR            LTR
4149    chr1.29551658.29552153             L2b       LINE           LINE
4150    chr1.29551658.29552153          MER91C        DNA            DNA
4151    chr1.29554065.29554841            MIRb       SINE           SINE
4152    chr1.29554065.29554841           (TG)n      Other  Simple_repeat
4153    chr1.29563371.29563982     HERV4_I-int        LTR            LTR
4154    chr1.29569956.29570517            LTR8        LTR            LTR
4155    chr1.29579599.29580377          L1ME3A       LINE           LINE
4156    chr1.29592612.29593233            <NA>       <NA>           <NA>
4157    chr1.29639938.29640560            MIRb       SINE           SINE
4158    chr1.29649468.29649817           MLT1K        LTR            LTR
4159    chr1.29675489.29676081            MSTA        LTR            LTR
4160    chr1.29682440.29683259            MIRb       SINE           SINE
4161    chr1.29688442.29689044           L1MCc       LINE           LINE
4162    chr1.29697948.29698481          G-rich      Other Low_complexity
4163    chr1.29697948.29698481        (GCAGG)n      Other  Simple_repeat
4164    chr1.29703648.29703981            <NA>       <NA>           <NA>
4165    chr1.29706906.29707289          G-rich      Other Low_complexity
4166    chr1.29709296.29710125            MIRc       SINE           SINE
4167    chr1.29793021.29793522          MER58B        DNA            DNA
4168    chr1.29793021.29793522          LTR41B        LTR            LTR
4169    chr1.29811354.29811580             L2a       LINE           LINE
4170    chr1.29812538.29812986            <NA>       <NA>           <NA>
4171    chr1.29824637.29825932        (CAGGC)n      Other  Simple_repeat
4172    chr1.29824637.29825932           (CA)n      Other  Simple_repeat
4173    chr1.29838880.29839175            MIRc       SINE           SINE
4174    chr1.29838880.29839175           MLT1O        LTR            LTR
4175    chr1.29849112.29849511          LTR16C        LTR            LTR
4176    chr1.29855864.29856070            <NA>       <NA>           <NA>
4177    chr1.29856641.29857202        (GGCTG)n      Other  Simple_repeat
4178    chr1.29864986.29865426          L1ME3G       LINE           LINE
4179    chr1.29866649.29866940             L2a       LINE           LINE
4180    chr1.29875556.29876052           MER89        LTR            LTR
4181    chr1.29897425.29897656            <NA>       <NA>           <NA>
4182    chr1.29900669.29901155             MIR       SINE           SINE
4183    chr1.29901527.29901944            MIR3       SINE           SINE
4184    chr1.29962210.29963259            <NA>       <NA>           <NA>
4185    chr1.29973428.29973689            <NA>       <NA>           <NA>
4186    chr1.29974151.29974932            MIRb       SINE           SINE
4187    chr1.29974151.29974932            MIR3       SINE           SINE
4188    chr1.29975011.29975341            MIR3       SINE           SINE
4189    chr1.30001053.30001726            MIRb       SINE           SINE
4190    chr1.30001053.30001726            MIRb       SINE           SINE
4191    chr1.30001053.30001726           MER85        DNA            DNA
4192    chr1.30001053.30001726            MIRb       SINE           SINE
4193    chr1.30008313.30008848   ERV3-16A3_LTR        LTR            LTR
4194    chr1.30008313.30008848            MIRc       SINE           SINE
4195    chr1.30008313.30008848           (GT)n      Other  Simple_repeat
4196    chr1.30008313.30008848       (TGTGTG)n      Other  Simple_repeat
4197    chr1.30034478.30035089            MIRb       SINE           SINE
4198    chr1.30058985.30059358           MLT1K        LTR            LTR
4199    chr1.30083700.30084640             L2b       LINE           LINE
4200    chr1.30083700.30084640            MIR3       SINE           SINE
4201    chr1.30083700.30084640           MLT1O        LTR            LTR
4202    chr1.30088734.30089362           AluSz       SINE           SINE
4203    chr1.30088734.30089362         ORSL-2a        DNA            DNA
4204    chr1.30106046.30106426            MIRb       SINE           SINE
4205    chr1.30106046.30106426             MIR       SINE           SINE
4206    chr1.30111508.30112083            <NA>       <NA>           <NA>
4207    chr1.30128715.30129420         (TTTC)n      Other  Simple_repeat
4208    chr1.30128715.30129420          G-rich      Other Low_complexity
4209    chr1.30172525.30172906             MIR       SINE           SINE
4210    chr1.30172525.30172906            MIRb       SINE           SINE
4211    chr1.30184688.30185120            <NA>       <NA>           <NA>
4212    chr1.30191125.30191637              L2       LINE           LINE
4213    chr1.30220876.30221249          L1ME4b       LINE           LINE
4214    chr1.30253802.30254130            <NA>       <NA>           <NA>
4215    chr1.30264348.30265143            MIR3       SINE           SINE
4216    chr1.30264348.30265143             MIR       SINE           SINE
4217    chr1.30264348.30265143           MER33        DNA            DNA
4218    chr1.30286700.30287245            <NA>       <NA>           <NA>
4219    chr1.30511769.30512470             L2c       LINE           LINE
4220    chr1.30511769.30512470             MIR       SINE           SINE
4221    chr1.30511769.30512470           LTR33        LTR            LTR
4222    chr1.30513162.30513526             L2b       LINE           LINE
4223    chr1.30513162.30513526             L2b       LINE           LINE
4224    chr1.30513162.30513526            MIR3       SINE           SINE
4225    chr1.30513162.30513526         LTR16E1        LTR            LTR
4226    chr1.30522377.30522906           LTR33        LTR            LTR
4227    chr1.30522377.30522906             L2b       LINE           LINE
4228    chr1.30523109.30523601             MIR       SINE           SINE
4229    chr1.30525897.30526442            <NA>       <NA>           <NA>
4230    chr1.30527401.30528026             L2b       LINE           LINE
4231    chr1.30600696.30601002           LTR27        LTR            LTR
4232    chr1.30618275.30618893            MIR3       SINE           SINE
4233    chr1.30618275.30618893            MIRb       SINE           SINE
4234    chr1.30638800.30639502            <NA>       <NA>           <NA>
4235    chr1.30655685.30656447          MER91C        DNA            DNA
4236    chr1.30655685.30656447             L2b       LINE           LINE
4237    chr1.30668107.30668296          AluSz6       SINE           SINE
4238    chr1.30685165.30685906       (CCCCGC)n      Other  Simple_repeat
4239    chr1.30685165.30685906           MLT1O        LTR            LTR
4240    chr1.30697798.30698606            <NA>       <NA>           <NA>
4241    chr1.30700988.30701558             L2b       LINE           LINE
4242    chr1.30706514.30707085            MIRb       SINE           SINE
4243    chr1.30707258.30708416            MIRb       SINE           SINE
4244    chr1.30707258.30708416           L1MA9       LINE           LINE
4245    chr1.30713472.30713676            <NA>       <NA>           <NA>
4246    chr1.30717999.30719579            <NA>       <NA>           <NA>
4247    chr1.30727698.30728202         (TCTC)n      Other  Simple_repeat
4248    chr1.30727698.30728202             L3b       LINE           LINE
4249    chr1.30732387.30732999           (GT)n      Other  Simple_repeat
4250    chr1.30756544.30757176             MIR       SINE           SINE
4251    chr1.30756544.30757176             L3b       LINE           LINE
4252    chr1.30756544.30757176            MIR3       SINE           SINE
4253    chr1.30763596.30763983            MIR3       SINE           SINE
4254    chr1.30773435.30773923           AluJr       SINE           SINE
4255    chr1.30773435.30773923        (AGGAG)n      Other  Simple_repeat
4256    chr1.30778434.30778677             MIR       SINE           SINE
4257    chr1.30778434.30778677           MLT1K        LTR            LTR
4258    chr1.30779556.30780057            MIRc       SINE           SINE
4259    chr1.30779556.30780057            MIRb       SINE           SINE
4260    chr1.30779556.30780057           L1MB3       LINE           LINE
4261    chr1.30779556.30780057           AluJb       SINE           SINE
4262    chr1.30782430.30783306       (CCCCAA)n      Other  Simple_repeat
4263    chr1.30782430.30783306            MIR3       SINE           SINE
4264    chr1.30795028.30795337        MIR1_Amn       SINE           SINE
4265    chr1.30795028.30795337            MIRb       SINE           SINE
4266    chr1.30798233.30798615             MIR       SINE           SINE
4267    chr1.30798233.30798615         MER102b        DNA            DNA
4268    chr1.30801540.30802206            MIR3       SINE           SINE
4269    chr1.30803394.30803842            MIRb       SINE           SINE
4270    chr1.30803394.30803842            MIRb       SINE           SINE
4271    chr1.30809294.30810325          L1ME4c       LINE           LINE
4272    chr1.30809294.30810325             L2a       LINE           LINE
4273    chr1.30809294.30810325          LTR85a        LTR            LTR
4274    chr1.30816345.30817355             L2b       LINE           LINE
4275    chr1.30816345.30817355            MIRb       SINE           SINE
4276    chr1.30816345.30817355            MIRc       SINE           SINE
4277    chr1.30818615.30818842             L2a       LINE           LINE
4278    chr1.30823782.30824966             L2b       LINE           LINE
4279    chr1.30823782.30824966             L2c       LINE           LINE
4280    chr1.30840841.30841832            MIRb       SINE           SINE
4281    chr1.30840841.30841832             L2c       LINE           LINE
4282    chr1.30842633.30842994            MIR3       SINE           SINE
4283    chr1.30847440.30847730        (CCCCT)n      Other  Simple_repeat
4284    chr1.30852070.30852415           (GT)n      Other  Simple_repeat
4285    chr1.30854231.30854385           MLT1J        LTR            LTR
4286    chr1.30856234.30856806           (AC)n      Other  Simple_repeat
4287    chr1.30856234.30856806             MIR       SINE           SINE
4288    chr1.30858435.30859250             L2b       LINE           LINE
4289    chr1.30858435.30859250           (CA)n      Other  Simple_repeat
4290    chr1.30858435.30859250             L2b       LINE           LINE
4291    chr1.30887564.30888986             L2b       LINE           LINE
4292    chr1.30887564.30888986            MIR3       SINE           SINE
4293    chr1.30887564.30888986           (CA)n      Other  Simple_repeat
4294    chr1.30894525.30895021           (GT)n      Other  Simple_repeat
4295    chr1.30901244.30901516            <NA>       <NA>           <NA>
4296    chr1.30905801.30906126           (AC)n      Other  Simple_repeat
4297    chr1.30905801.30906126           (AC)n      Other  Simple_repeat
4298    chr1.30907242.30908066           (CA)n      Other  Simple_repeat
4299    chr1.30907242.30908066       (TCCCCC)n      Other  Simple_repeat
4300    chr1.30908652.30908989          G-rich      Other Low_complexity
4301    chr1.30908652.30908989          G-rich      Other Low_complexity
4302    chr1.30908652.30908989      (GCCCCCA)n      Other  Simple_repeat
4303    chr1.30911202.30911822              L3       LINE           LINE
4304    chr1.30929117.30929868            MIRc       SINE           SINE
4305    chr1.30929117.30929868            MIRc       SINE           SINE
4306    chr1.30933349.30934446           (CA)n      Other  Simple_repeat
4307    chr1.30933349.30934446             MIR       SINE           SINE
4308    chr1.30933349.30934446             L2a       LINE           LINE
4309    chr1.30936635.30937190            <NA>       <NA>           <NA>
4310    chr1.30941915.30942130            <NA>       <NA>           <NA>
4311    chr1.30942454.30942984           AluJr       SINE           SINE
4312    chr1.30948714.30949180           AluJb       SINE           SINE
4313    chr1.30964535.30965159            <NA>       <NA>           <NA>
4314    chr1.30966783.30967206            <NA>       <NA>           <NA>
4315    chr1.30975997.30976465          AluSx1       SINE           SINE
4316    chr1.30977140.30977453        Tigger4b        DNA            DNA
4317    chr1.30990625.30990867            <NA>       <NA>           <NA>
4318    chr1.30996256.30996482            <NA>       <NA>           <NA>
4319    chr1.31007286.31007904            <NA>       <NA>           <NA>
4320    chr1.31010211.31010980          MLT1F2        LTR            LTR
4321    chr1.31010211.31010980          MLT1F2        LTR            LTR
4322    chr1.31010211.31010980           AluJr       SINE           SINE
4323    chr1.31025125.31025766           AluSx       SINE           SINE
4324    chr1.31036496.31037107           AluJr       SINE           SINE
4325    chr1.31038282.31038638             L2a       LINE           LINE
4326    chr1.31041576.31041749            MSTB        LTR            LTR
4327    chr1.31047164.31047604           AluSg       SINE           SINE
4328    chr1.31064801.31066233            MIRb       SINE           SINE
4329    chr1.31101003.31101423            <NA>       <NA>           <NA>
4330    chr1.31111050.31111657             L2c       LINE           LINE
4331    chr1.31111050.31111657          AluSz6       SINE           SINE
4332    chr1.31111050.31111657             L2c       LINE           LINE
4333    chr1.31111050.31111657            MIRb       SINE           SINE
4334    chr1.31119779.31121081           AluSx       SINE           SINE
4335    chr1.31119779.31121081           AluJb       SINE           SINE
4336    chr1.31119779.31121081           (CA)n      Other  Simple_repeat
4337    chr1.31119779.31121081     MamGypLTR3a        LTR            LTR
4338    chr1.31119779.31121081          MER63A        DNA            DNA
4339    chr1.31119779.31121081            MIRb       SINE           SINE
4340    chr1.31127298.31127782          L1ME3G       LINE           LINE
4341    chr1.31127298.31127782             L2c       LINE           LINE
4342    chr1.31127298.31127782            MIRb       SINE           SINE
4343    chr1.31127298.31127782          AluSq2       SINE           SINE
4344    chr1.31145656.31146083           LTR23        LTR            LTR
4345    chr1.31145656.31146083             L2b       LINE           LINE
4346    chr1.31145656.31146083          L1ME3G       LINE           LINE
4347    chr1.31145656.31146083          L1ME3G       LINE           LINE
4348    chr1.31154574.31155174            MIRb       SINE           SINE
4349    chr1.31154574.31155174          G-rich      Other Low_complexity
4350    chr1.31155264.31155859            MIRc       SINE           SINE
4351    chr1.31155264.31155859           LTR54        LTR            LTR
4352    chr1.31162622.31163103           AluSq       SINE           SINE
4353    chr1.31162622.31163103             MIR       SINE           SINE
4354    chr1.31162622.31163103           (TG)n      Other  Simple_repeat
4355    chr1.31170614.31171212          AluSz6       SINE           SINE
4356    chr1.31170614.31171212            MIR3       SINE           SINE
4357    chr1.31170614.31171212            LTR8        LTR            LTR
4358    chr1.31181553.31182041       (TCCAAG)n      Other  Simple_repeat
4359    chr1.31182066.31182670            <NA>       <NA>           <NA>
4360    chr1.31185612.31185944            MIRc       SINE           SINE
4361    chr1.31185612.31185944           MER5B        DNA            DNA
4362    chr1.31185612.31185944           MER5A        DNA            DNA
4363    chr1.31185612.31185944             L2b       LINE           LINE
4364    chr1.31215933.31216471             MIR       SINE           SINE
4365    chr1.31215933.31216471             MIR       SINE           SINE
4366    chr1.31218707.31218984            <NA>       <NA>           <NA>
4367    chr1.31223943.31224130              L3       LINE           LINE
4368    chr1.31238751.31240149           (CA)n      Other  Simple_repeat
4369    chr1.31238751.31240149      (GCGCCGG)n      Other  Simple_repeat
4370    chr1.31238751.31240149      (GCGCGGA)n      Other  Simple_repeat
4371    chr1.31238751.31240149        (AGCGC)n      Other  Simple_repeat
4372    chr1.31238751.31240149          G-rich      Other Low_complexity
4373    chr1.31238751.31240149            MIRb       SINE           SINE
4374    chr1.31272465.31272680            MIRb       SINE           SINE
4375    chr1.31274966.31275436            MIR3       SINE           SINE
4376    chr1.31274966.31275436          AluSz6       SINE           SINE
4377    chr1.31296376.31297872             L2b       LINE           LINE
4378    chr1.31296376.31297872             L2b       LINE           LINE
4379    chr1.31306277.31306875          MER44C        DNA            DNA
4380    chr1.31306277.31306875        L4_A_Mam       LINE           LINE
4381    chr1.31306277.31306875           AluJr       SINE           SINE
4382    chr1.31306277.31306875           AluSc       SINE           SINE
4383    chr1.31326519.31326784      (GCTGACA)n      Other  Simple_repeat
4384    chr1.31355961.31356159            <NA>       <NA>           <NA>
4385    chr1.31368615.31369137            <NA>       <NA>           <NA>
4386    chr1.31372737.31374023            MIRb       SINE           SINE
4387    chr1.31381612.31382921            MIR3       SINE           SINE
4388    chr1.31381612.31382921             L2b       LINE           LINE
4389    chr1.31381612.31382921             L2b       LINE           LINE
4390    chr1.31381612.31382921           MLT1J        LTR            LTR
4391    chr1.31388445.31388701          MER45A        DNA            DNA
4392    chr1.31394462.31395288            MIR3       SINE           SINE
4393    chr1.31394462.31395288            MIRc       SINE           SINE
4394    chr1.31394462.31395288            MIR3       SINE           SINE
4395    chr1.31394462.31395288          AluSx1       SINE           SINE
4396    chr1.31407064.31407480      MamRep4096        DNA            DNA
4397    chr1.31413014.31414186       (GGGGCC)n      Other  Simple_repeat
4398    chr1.31413014.31414186         (GTCC)n      Other  Simple_repeat
4399    chr1.31421420.31421830             L2c       LINE           LINE
4400    chr1.31422488.31423139             L2c       LINE           LINE
4401    chr1.31422488.31423139             L2a       LINE           LINE
4402    chr1.31444784.31445274           LTR44        LTR            LTR
4403    chr1.31444784.31445274            MIRb       SINE           SINE
4404    chr1.31505895.31506223            <NA>       <NA>           <NA>
4405    chr1.31520748.31521299         MamTip3        DNA            DNA
4406    chr1.31523824.31524164             MIR       SINE           SINE
4407    chr1.31530928.31531857 ERV24B_Prim-int        LTR            LTR
4408    chr1.31532120.31532534 ERV24B_Prim-int        LTR            LTR
4409    chr1.31548645.31550209             L2a       LINE           LINE
4410    chr1.31548645.31550209            MIR3       SINE           SINE
4411    chr1.31548645.31550209             L2a       LINE           LINE
4412    chr1.31548645.31550209           MER99        DNA            DNA
4413    chr1.31562823.31563510          MER41B        LTR            LTR
4414    chr1.31563970.31564531            MIRb       SINE           SINE
4415    chr1.31563970.31564531            MIR3       SINE           SINE
4416    chr1.31563970.31564531             L2b       LINE           LINE
4417    chr1.31573835.31574589            AluY       SINE           SINE
4418    chr1.31573835.31574589           AluJb       SINE           SINE
4419    chr1.31574909.31575218            <NA>       <NA>           <NA>
4420    chr1.31576320.31576859            <NA>       <NA>           <NA>
4421    chr1.31577894.31578159             MIR       SINE           SINE
4422    chr1.31580281.31580783             L2b       LINE           LINE
4423    chr1.31583930.31584879          G-rich      Other Low_complexity
4424    chr1.31591676.31592267            MIRb       SINE           SINE
4425    chr1.31591676.31592267       (TCTCTG)n      Other  Simple_repeat
4426    chr1.31593885.31594549             L2b       LINE           LINE
4427    chr1.31593885.31594549            MIRb       SINE           SINE
4428    chr1.31593885.31594549           AluJb       SINE           SINE
4429    chr1.31617678.31618447           (TG)n      Other  Simple_repeat
4430    chr1.31625525.31625962            <NA>       <NA>           <NA>
4431    chr1.31627704.31628450            <NA>       <NA>           <NA>
4432    chr1.31629032.31629285              L3       LINE           LINE
4433    chr1.31633106.31633400            <NA>       <NA>           <NA>
4434    chr1.31634548.31635028           MLT1I        LTR            LTR
4435    chr1.31639387.31639877             L2b       LINE           LINE
4436    chr1.31639387.31639877             L2c       LINE           LINE
4437    chr1.31644350.31645403            MIR3       SINE           SINE
4438    chr1.31646788.31647448              L2       LINE           LINE
4439    chr1.31646788.31647448             L2c       LINE           LINE
4440    chr1.31663925.31664312       (GGGAAG)n      Other  Simple_repeat
4441    chr1.31663925.31664312            MIR3       SINE           SINE
4442    chr1.31666223.31666941             L2a       LINE           LINE
4443    chr1.31666223.31666941             L2a       LINE           LINE
4444    chr1.31669741.31670294            <NA>       <NA>           <NA>
4445    chr1.31674837.31676298             L2a       LINE           LINE
4446    chr1.31674837.31676298           AluJo       SINE           SINE
4447    chr1.31674837.31676298             MIR       SINE           SINE
4448    chr1.31674837.31676298           AluSx       SINE           SINE
4449    chr1.31681440.31682003            MIRb       SINE           SINE
4450    chr1.31681440.31682003            MIRc       SINE           SINE
4451    chr1.31681440.31682003            MIR3       SINE           SINE
4452    chr1.31681440.31682003      Charlie19a        DNA            DNA
4453    chr1.31684136.31684366            <NA>       <NA>           <NA>
4454    chr1.31689722.31690342            MIRb       SINE           SINE
4455    chr1.31691989.31692294            <NA>       <NA>           <NA>
4456    chr1.31700871.31701505            <NA>       <NA>           <NA>
4457    chr1.31703594.31704291            MIR3       SINE           SINE
4458    chr1.31703594.31704291          (GGA)n      Other  Simple_repeat
4459    chr1.31708251.31708660           AluJr       SINE           SINE
4460    chr1.31708251.31708660             L2a       LINE           LINE
4461    chr1.31712557.31713100             MIR       SINE           SINE
4462    chr1.31714326.31715876            MIR3       SINE           SINE
4463    chr1.31723816.31724209            MIRc       SINE           SINE
4464    chr1.31726064.31726655            MIRb       SINE           SINE
4465    chr1.31726064.31726655             MIR       SINE           SINE
4466    chr1.31734544.31734907              L3       LINE           LINE
4467    chr1.31736868.31737386            <NA>       <NA>           <NA>
4468    chr1.31745185.31745979         OldhAT1        DNA            DNA
4469    chr1.31746775.31747121             L2b       LINE           LINE
4470    chr1.31748291.31748789            MIRb       SINE           SINE
4471    chr1.31748291.31748789             L2b       LINE           LINE
4472    chr1.31750393.31751083             L2c       LINE           LINE
4473    chr1.31751945.31752384            MIRb       SINE           SINE
4474    chr1.31755167.31755639             L2b       LINE           LINE
4475    chr1.31760491.31761362          G-rich      Other Low_complexity
4476    chr1.31760491.31761362         (CGCC)n      Other  Simple_repeat
4477    chr1.31760491.31761362          G-rich      Other Low_complexity
4478    chr1.31761864.31763352            MIRb       SINE           SINE
4479    chr1.31761864.31763352          G-rich      Other Low_complexity
4480    chr1.31761864.31763352        (CCACC)n      Other  Simple_repeat
4481    chr1.31764418.31765437       (CATGTG)n      Other  Simple_repeat
4482    chr1.31769809.31770423             MIR       SINE           SINE
4483    chr1.31770933.31771581           (GT)n      Other  Simple_repeat
4484    chr1.31772222.31772821            <NA>       <NA>           <NA>
4485    chr1.31780836.31781623             L2b       LINE           LINE
4486    chr1.31780836.31781623             L2b       LINE           LINE
4487    chr1.31781749.31782837          G-rich      Other Low_complexity
4488    chr1.31781749.31782837           (TG)n      Other  Simple_repeat
4489    chr1.31788117.31789674            MIRc       SINE           SINE
4490    chr1.31795969.31796608            MIRb       SINE           SINE
4491    chr1.31798519.31799217            MIRb       SINE           SINE
4492    chr1.31798519.31799217            MIR3       SINE           SINE
4493    chr1.31798519.31799217            MIR3       SINE           SINE
4494    chr1.31811569.31811897            MIRb       SINE           SINE
4495    chr1.31813914.31814808            <NA>       <NA>           <NA>
4496    chr1.31815491.31816224            MIRc       SINE           SINE
4497    chr1.31827034.31827385         LTR16E1        LTR            LTR
4498    chr1.31827034.31827385         LTR16E1        LTR            LTR
4499    chr1.31830148.31830525            <NA>       <NA>           <NA>
4500    chr1.31831696.31832874            MIRb       SINE           SINE
4501    chr1.31831696.31832874            MIRb       SINE           SINE
4502    chr1.31831696.31832874             MIR       SINE           SINE
4503    chr1.31855512.31855791             L2a       LINE           LINE
4504    chr1.31855512.31855791             MIR       SINE           SINE
4505    chr1.31866257.31866639          AluSx3       SINE           SINE
4506    chr1.31866257.31866639           MER49        LTR            LTR
4507    chr1.31880287.31880716            MIRb       SINE           SINE
4508    chr1.31880287.31880716        MIR1_Amn       SINE           SINE
4509    chr1.31880287.31880716         GA-rich      Other Low_complexity
4510    chr1.31881141.31882009          L1ME4b       LINE           LINE
4511    chr1.31923796.31924199           AluJo       SINE           SINE
4512    chr1.31932571.31932791            <NA>       <NA>           <NA>
4513    chr1.31937317.31938849          (CGG)n      Other  Simple_repeat
4514    chr1.31937317.31938849        (CGGCG)n      Other  Simple_repeat
4515    chr1.31937317.31938849          (CGG)n      Other  Simple_repeat
4516    chr1.31937317.31938849          (GCC)n      Other  Simple_repeat
4517    chr1.31937317.31938849         (GCTG)n      Other  Simple_repeat
4518    chr1.31939868.31940071            <NA>       <NA>           <NA>
4519    chr1.31944088.31945051            MIRb       SINE           SINE
4520    chr1.31944088.31945051            MER2        DNA            DNA
4521    chr1.31954695.31955567         (AGGC)n      Other  Simple_repeat
4522    chr1.31954695.31955567             MIR       SINE           SINE
4523    chr1.31955985.31956683           AluSq       SINE           SINE
4524    chr1.31963970.31964616           AluSp       SINE           SINE
4525    chr1.31970738.31971371           AluJb       SINE           SINE
4526    chr1.31970738.31971371            (T)n      Other  Simple_repeat
4527    chr1.31970738.31971371           LTR79        LTR            LTR
4528    chr1.31977708.31978183           LTR33        LTR            LTR
4529    chr1.31977708.31978183           LTR50        LTR            LTR
4530    chr1.31978887.31979334           AluJo       SINE           SINE
4531    chr1.31981944.31982275           MLT1K        LTR            LTR
4532    chr1.31981944.31982275             L2b       LINE           LINE
4533    chr1.31984728.31984978             L2b       LINE           LINE
4534    chr1.31987233.31987610            <NA>       <NA>           <NA>
4535    chr1.32003534.32003831        Charlie8        DNA            DNA
4536    chr1.32013246.32015077            <NA>       <NA>           <NA>
4537    chr1.32031875.32032481            <NA>       <NA>           <NA>
4538    chr1.32037622.32038152            <NA>       <NA>           <NA>
4539    chr1.32039476.32039866            <NA>       <NA>           <NA>
4540    chr1.32052888.32053343           AluJo       SINE           SINE
4541    chr1.32052888.32053343             L2b       LINE           LINE
4542    chr1.32055953.32056246            <NA>       <NA>           <NA>
4543    chr1.32062276.32063082            AluY       SINE           SINE
4544    chr1.32062276.32063082            MIRb       SINE           SINE
4545    chr1.32063364.32063716            <NA>       <NA>           <NA>
4546    chr1.32066468.32066810           AluJo       SINE           SINE
4547    chr1.32066468.32066810            MIRc       SINE           SINE
4548    chr1.32072387.32073671              L2       LINE           LINE
4549    chr1.32107705.32108941         AluSq10       SINE           SINE
4550    chr1.32116218.32116391          AluYk3       SINE           SINE
4551    chr1.32116218.32116391         Tigger1        DNA            DNA
4552    chr1.32116218.32116391           AluSp       SINE           SINE
4553    chr1.32120802.32121630          AluSx1       SINE           SINE
4554    chr1.32120802.32121630           AluSz       SINE           SINE
4555    chr1.32120802.32121630              L2       LINE           LINE
4556    chr1.32133363.32133842           L1M4c       LINE           LINE
4557    chr1.32133363.32133842           AluJo       SINE           SINE
4558    chr1.32133363.32133842           L1M4c       LINE           LINE
4559    chr1.32133363.32133842          AluSx1       SINE           SINE
4560    chr1.32139080.32139311             L2b       LINE           LINE
4561    chr1.32142753.32143219           AluJb       SINE           SINE
4562    chr1.32150970.32151793           AluJr       SINE           SINE
4563    chr1.32150970.32151793           L1MEc       LINE           LINE
4564    chr1.32150970.32151793           L1MEc       LINE           LINE
4565    chr1.32179291.32180895            MIR3       SINE           SINE
4566    chr1.32179291.32180895           (GC)n      Other  Simple_repeat
4567    chr1.32199754.32201716             MIR       SINE           SINE
4568    chr1.32199754.32201716          (CTG)n      Other  Simple_repeat
4569    chr1.32199754.32201716           (TC)n      Other  Simple_repeat
4570    chr1.32205284.32206087            <NA>       <NA>           <NA>
4571    chr1.32208912.32209294            <NA>       <NA>           <NA>
4572    chr1.32215525.32216081            <NA>       <NA>           <NA>
4573    chr1.32221907.32222971           AluJo       SINE           SINE
4574    chr1.32235965.32236555             L2c       LINE           LINE
4575    chr1.32235965.32236555         Tigger7        DNA            DNA
4576    chr1.32235965.32236555         Tigger7        DNA            DNA
4577    chr1.32235965.32236555          AluSc8       SINE           SINE
4578    chr1.32239895.32241735            <NA>       <NA>           <NA>
4579    chr1.32248016.32248707           MER5B        DNA            DNA
4580    chr1.32248016.32248707       (GAGCCG)n      Other  Simple_repeat
4581    chr1.32263881.32264464           AluJb       SINE           SINE
4582    chr1.32263881.32264464          FLAM_A       SINE           SINE
4583    chr1.32272889.32274099           (TG)n      Other  Simple_repeat
4584    chr1.32276309.32276840            <NA>       <NA>           <NA>
4585    chr1.32291765.32292706            MIR3       SINE           SINE
4586    chr1.32291765.32292706        (GGGCC)n      Other  Simple_repeat
4587    chr1.32304086.32304617             L2c       LINE           LINE
4588    chr1.32304086.32304617           AluJr       SINE           SINE
4589    chr1.32304086.32304617           AluSz       SINE           SINE
4590    chr1.32316241.32317070            AluY       SINE           SINE
4591    chr1.32316241.32317070            MIRc       SINE           SINE
4592    chr1.32316241.32317070            MIR3       SINE           SINE
4593    chr1.32334388.32334772            <NA>       <NA>           <NA>
4594    chr1.32335018.32336661        (CCCCT)n      Other  Simple_repeat
4595    chr1.32335018.32336661        (CTCCG)n      Other  Simple_repeat
4596    chr1.32345310.32345906              L2       LINE           LINE
4597    chr1.32345310.32345906              L2       LINE           LINE
4598    chr1.32351102.32352459            <NA>       <NA>           <NA>
4599    chr1.32353992.32354346        L2-3_Crp       LINE           LINE
4600    chr1.32361721.32362753          G-rich      Other Low_complexity
4601    chr1.32361721.32362753          G-rich      Other Low_complexity
4602    chr1.32372126.32372448            <NA>       <NA>           <NA>
4603    chr1.32393937.32395307             L2a       LINE           LINE
4604    chr1.32400724.32401432            MIRb       SINE           SINE
4605    chr1.32400724.32401432          MER45A        DNA            DNA
4606    chr1.32400724.32401432          AluSx3       SINE           SINE
4607    chr1.32413683.32414198   HUERS-P3b-int        LTR            LTR
4608    chr1.32447987.32449057  HERVIP10FH-int        LTR            LTR
4609    chr1.32447987.32449057           LTR13        LTR            LTR
4610    chr1.32464203.32465543           MLT1C        LTR            LTR
4611    chr1.32464203.32465543             L2a       LINE           LINE
4612    chr1.32471055.32471407          (GGC)n      Other  Simple_repeat
4613    chr1.32485489.32485894            <NA>       <NA>           <NA>
4614    chr1.32487193.32487636       Charlie10        DNA            DNA
4615    chr1.32487193.32487636           AluSz       SINE           SINE
4616    chr1.32492502.32492942           AluSq       SINE           SINE
4617    chr1.32492502.32492942             L2c       LINE           LINE
4618    chr1.32494112.32494983           AluSq       SINE           SINE
4619    chr1.32494112.32494983            MIR3       SINE           SINE
4620    chr1.32494112.32494983           (AC)n      Other  Simple_repeat
4621    chr1.32494112.32494983           AluSx       SINE           SINE
4622    chr1.32500112.32501333           L1MB5       LINE           LINE
4623    chr1.32500112.32501333     (GGGCGAGA)n      Other  Simple_repeat
4624    chr1.32500112.32501333          (GGC)n      Other  Simple_repeat
4625    chr1.32500112.32501333          G-rich      Other Low_complexity
4626    chr1.32500112.32501333         (CCGG)n      Other  Simple_repeat
4627    chr1.32500112.32501333           L1MC4       LINE           LINE
4628    chr1.32500112.32501333           AluJb       SINE           SINE
4629    chr1.32520391.32521025          LTR41C        LTR            LTR
4630    chr1.32520391.32521025            AluY       SINE           SINE
4631    chr1.32520391.32521025          AluSq2       SINE           SINE
4632    chr1.32525866.32526321           AluJb       SINE           SINE
4633    chr1.32525866.32526321          MER58B        DNA            DNA
4634    chr1.32525866.32526321           MLT1I        LTR            LTR
4635    chr1.32539103.32540824          G-rich      Other Low_complexity
4636    chr1.32539103.32540824            MIRc       SINE           SINE
4637    chr1.32611975.32612618           AluSx       SINE           SINE
4638    chr1.32650293.32651803            <NA>       <NA>           <NA>
4639    chr1.32661198.32661678            L1P4       LINE           LINE
4640    chr1.32661198.32661678           AluSp       SINE           SINE
4641    chr1.32661198.32661678            L1P4       LINE           LINE
4642    chr1.32666945.32667515          LTR13A        LTR            LTR
4643    chr1.32685537.32685861            <NA>       <NA>           <NA>
4644    chr1.32695230.32695636            <NA>       <NA>           <NA>
4645    chr1.32701191.32703771          AluSq2       SINE           SINE
4646    chr1.32701191.32703771             L2c       LINE           LINE
4647    chr1.32701191.32703771            MIR3       SINE           SINE
4648    chr1.32712099.32712670            MIRb       SINE           SINE
4649    chr1.32712099.32712670            MIRb       SINE           SINE
4650    chr1.32716705.32717049            <NA>       <NA>           <NA>
4651    chr1.32724940.32725508            MIRb       SINE           SINE
4652    chr1.32729928.32730396           AluJb       SINE           SINE
4653    chr1.32729928.32730396        UCON132b        DNA            DNA
4654    chr1.32729928.32730396            MIRb       SINE           SINE
4655    chr1.32741314.32741868            <NA>       <NA>           <NA>
4656    chr1.32746315.32746565            MIRb       SINE           SINE
4657    chr1.32753678.32754850         (ACAC)n      Other  Simple_repeat
4658    chr1.32753678.32754850           (AC)n      Other  Simple_repeat
4659    chr1.32758889.32759176            MIRb       SINE           SINE
4660    chr1.32758889.32759176            MIRb       SINE           SINE
4661    chr1.32759802.32760576            MIRc       SINE           SINE
4662    chr1.32759802.32760576           (GT)n      Other  Simple_repeat
4663    chr1.32767692.32768029        (TCCCC)n      Other  Simple_repeat
4664    chr1.32769558.32770485         MER103C        DNA            DNA
4665    chr1.32769558.32770485       (GGAGGC)n      Other  Simple_repeat
4666    chr1.32772895.32773483            <NA>       <NA>           <NA>
4667    chr1.32791965.32792184           L1MEg       LINE           LINE
4668    chr1.32806394.32806652         Tigger1        DNA            DNA
4669    chr1.32806770.32807394         LTR38A1        LTR            LTR
4670    chr1.32806770.32807394          L1PA15       LINE           LINE
4671    chr1.32806770.32807394         LTR38A1        LTR            LTR
4672    chr1.32810312.32810835             L2a       LINE           LINE
4673    chr1.32816725.32818601             L2c       LINE           LINE
4674    chr1.32830268.32831011          AluSz6       SINE           SINE
4675    chr1.32869723.32871714       (GAGTGA)n      Other  Simple_repeat
4676    chr1.32869723.32871714       (GAGACA)n      Other  Simple_repeat
4677    chr1.32869723.32871714       (CCCGCC)n      Other  Simple_repeat
4678    chr1.32869723.32871714            MIRb       SINE           SINE
4679    chr1.32872672.32873097            <NA>       <NA>           <NA>
4680    chr1.32876572.32877102             MIR       SINE           SINE
4681    chr1.32886393.32887452          (CCG)n      Other  Simple_repeat
4682    chr1.32892879.32893429            <NA>       <NA>           <NA>
4683    chr1.32899964.32900785         (ACCC)n      Other  Simple_repeat
4684    chr1.32899964.32900785           AluJr       SINE           SINE
4685    chr1.32899964.32900785            MIRb       SINE           SINE
4686    chr1.32901128.32901714            MIR3       SINE           SINE
4687    chr1.32912532.32913088            MER3        DNA            DNA
4688    chr1.32912532.32913088             L2a       LINE           LINE
4689    chr1.32912532.32913088       Charlie1a        DNA            DNA
4690    chr1.32925502.32926257     HERVS71-int        LTR            LTR
4691    chr1.32933471.32933918            AluY       SINE           SINE
4692    chr1.32933471.32933918            MIRc       SINE           SINE
4693    chr1.32933939.32934421          AluSz6       SINE           SINE
4694    chr1.32939639.32940159            MIR3       SINE           SINE
4695    chr1.32947592.32948101          AluSx1       SINE           SINE
4696    chr1.32953327.32953841            <NA>       <NA>           <NA>
4697    chr1.32963749.32965094       (CCGCGG)n      Other  Simple_repeat
4698    chr1.32963749.32965094          (CGC)n      Other  Simple_repeat
4699    chr1.32972745.32973750       (GCCCCC)n      Other  Simple_repeat
4700    chr1.32972745.32973750          G-rich      Other Low_complexity
4701    chr1.32972745.32973750            (T)n      Other  Simple_repeat
4702    chr1.32972745.32973750           SVA_E Retroposon     Retroposon
4703    chr1.32975158.32975845           SVA_E Retroposon     Retroposon
4704    chr1.32975158.32975845       (GGAGAG)n      Other  Simple_repeat
4705    chr1.32989068.32989527             L3b       LINE           LINE
4706    chr1.32992322.32992850            MIRb       SINE           SINE
4707    chr1.32997313.32997938            MIRb       SINE           SINE
4708    chr1.32997313.32997938            MIRb       SINE           SINE
4709    chr1.32997313.32997938             L2b       LINE           LINE
4710    chr1.33005616.33006180            MIRb       SINE           SINE
4711    chr1.33005616.33006180           MER1B        DNA            DNA
4712    chr1.33007188.33007749            <NA>       <NA>           <NA>
4713    chr1.33008429.33008821         MamRTE1       LINE           LINE
4714    chr1.33008429.33008821            MIRb       SINE           SINE
4715    chr1.33009588.33010118            MIRb       SINE           SINE
4716    chr1.33011201.33011627            <NA>       <NA>           <NA>
4717    chr1.33030195.33030895           AluJr       SINE           SINE
4718    chr1.33030195.33030895             MIR       SINE           SINE
4719    chr1.33030195.33030895          L1ME3A       LINE           LINE
4720    chr1.33036052.33037174         (ACGC)n      Other  Simple_repeat
4721    chr1.33047815.33048377           MLT1I        LTR            LTR
4722    chr1.33047815.33048377              L2       LINE           LINE
4723    chr1.33047815.33048377            MIRb       SINE           SINE
4724    chr1.33047815.33048377           AluSc       SINE           SINE
4725    chr1.33055088.33055868          LTR78B        LTR            LTR
4726    chr1.33055088.33055868          LTR78B        LTR            LTR
4727    chr1.33060584.33061159          MLT1F1        LTR            LTR
4728    chr1.33060584.33061159            MSTC        LTR            LTR
4729    chr1.33080807.33081560            <NA>       <NA>           <NA>
4730    chr1.33086169.33086812            MIRb       SINE           SINE
4731    chr1.33086169.33086812             L2b       LINE           LINE
4732    chr1.33097306.33097498             MIR       SINE           SINE
4733    chr1.33099165.33099808         (CCCT)n      Other  Simple_repeat
4734    chr1.33126950.33127626           MER53        DNA            DNA
4735    chr1.33126950.33127626        MIR1_Amn       SINE           SINE
4736    chr1.33137757.33138100            <NA>       <NA>           <NA>
4737    chr1.33140157.33140455            MIR3       SINE           SINE
4738    chr1.33169133.33169895            MER3        DNA            DNA
4739    chr1.33180627.33182237          G-rich      Other Low_complexity
4740    chr1.33188533.33189256 ERV3-16A3_I-int        LTR            LTR
4741    chr1.33218794.33219181           (AC)n      Other  Simple_repeat
4742    chr1.33218794.33219181            MIRb       SINE           SINE
4743    chr1.33219537.33220451            MIRb       SINE           SINE
4744    chr1.33220942.33221682            MIRb       SINE           SINE
4745    chr1.33229146.33229451             L2a       LINE           LINE
4746    chr1.33229146.33229451          AluSx1       SINE           SINE
4747    chr1.33248327.33248519            MIRc       SINE           SINE
4748    chr1.33248327.33248519          LTR85b        LTR            LTR
4749    chr1.33255491.33256204        (CGGCG)n      Other  Simple_repeat
4750    chr1.33255491.33256204          (GGC)n      Other  Simple_repeat
4751    chr1.33256434.33257224       (GAGCCG)n      Other  Simple_repeat
4752    chr1.33256434.33257224           (GT)n      Other  Simple_repeat
4753    chr1.33289339.33289762             L2b       LINE           LINE
4754    chr1.33295377.33295876        MIR1_Amn       SINE           SINE
4755    chr1.33298598.33299058            <NA>       <NA>           <NA>
4756    chr1.33306391.33307441            MIR3       SINE           SINE
4757    chr1.33306391.33307441      (GCGCCAC)n      Other  Simple_repeat
4758    chr1.33327664.33328310           MLT1F        LTR            LTR
4759    chr1.33327664.33328310            MIRb       SINE           SINE
4760    chr1.33331816.33332030            <NA>       <NA>           <NA>
4761    chr1.33336257.33336443           AluSx       SINE           SINE
4762    chr1.33338369.33339649            <NA>       <NA>           <NA>
4763    chr1.33342163.33342805            <NA>       <NA>           <NA>
4764    chr1.33343665.33343847            <NA>       <NA>           <NA>
4765    chr1.33346965.33347280            <NA>       <NA>           <NA>
4766    chr1.33348877.33350655            MIR3       SINE           SINE
4767    chr1.33348877.33350655        (CCCGG)n      Other  Simple_repeat
4768    chr1.33348877.33350655             MIR       SINE           SINE
4769    chr1.33348877.33350655             MIR       SINE           SINE
4770    chr1.33361570.33362058          AluSq2       SINE           SINE
4771    chr1.33361570.33362058            MIRb       SINE           SINE
4772    chr1.33367545.33368404            <NA>       <NA>           <NA>
4773    chr1.33378630.33379219            <NA>       <NA>           <NA>
4774    chr1.33379749.33380176           (CT)n      Other  Simple_repeat
4775    chr1.33384148.33384688           MER5A        DNA            DNA
4776    chr1.33384148.33384688             L2c       LINE           LINE
4777    chr1.33387644.33387975            MIRb       SINE           SINE
4778    chr1.33396639.33397042             MIR       SINE           SINE
4779    chr1.33400275.33400554          L1ME3G       LINE           LINE
4780    chr1.33400275.33400554             MIR       SINE           SINE
4781    chr1.33430328.33431248      (GCCGCCC)n      Other  Simple_repeat
4782    chr1.33430328.33431248        (GCCCG)n      Other  Simple_repeat
4783    chr1.33433551.33434060           (GT)n      Other  Simple_repeat
4784    chr1.33436668.33437105             L2c       LINE           LINE
4785    chr1.33443230.33443642             L2b       LINE           LINE
4786    chr1.33443230.33443642             L2b       LINE           LINE
4787    chr1.33443747.33444236            MIRb       SINE           SINE
4788    chr1.33455746.33456404           (AG)n      Other  Simple_repeat
4789    chr1.33455746.33456404          MLT1G3        LTR            LTR
4790    chr1.33458507.33458968         (ACAC)n      Other  Simple_repeat
4791    chr1.33458507.33458968              L2       LINE           LINE
4792    chr1.33470421.33471031            MIRc       SINE           SINE
4793    chr1.33470421.33471031        (TCCTC)n      Other  Simple_repeat
4794    chr1.33470421.33471031            MIRb       SINE           SINE
4795    chr1.33472235.33472874             MIR       SINE           SINE
4796    chr1.33502771.33503231           THE1C        LTR            LTR
4797    chr1.33575314.33575865              L2       LINE           LINE
4798    chr1.33585963.33586588             MIR       SINE           SINE
4799    chr1.33585963.33586588         (TCAC)n      Other  Simple_repeat
4800    chr1.33612815.33613265            AluY       SINE           SINE
4801    chr1.33633157.33633637            <NA>       <NA>           <NA>
4802    chr1.33634918.33635119            <NA>       <NA>           <NA>
4803    chr1.33641053.33641405             L2b       LINE           LINE
4804    chr1.33654397.33654695            MIRb       SINE           SINE
4805    chr1.33670297.33671501             L2b       LINE           LINE
4806    chr1.33670297.33671501             L2b       LINE           LINE
4807    chr1.33709793.33710438             MIR       SINE           SINE
4808    chr1.33709793.33710438             L2c       LINE           LINE
4809    chr1.33709793.33710438             L2c       LINE           LINE
4810    chr1.33709793.33710438         (TGAA)n      Other  Simple_repeat
4811    chr1.33712195.33712716            <NA>       <NA>           <NA>
4812    chr1.33719847.33720488            MIRb       SINE           SINE
4813    chr1.33719847.33720488             L2b       LINE           LINE
4814    chr1.33735551.33736027          MER58A        DNA            DNA
4815    chr1.33763188.33763801           MER5A        DNA            DNA
4816    chr1.33813972.33814787              L2       LINE           LINE
4817    chr1.33813972.33814787              L2       LINE           LINE
4818    chr1.33849270.33849621           L1ME1       LINE           LINE
4819    chr1.33860796.33861070        Charlie9        DNA            DNA
4820    chr1.33860796.33861070             MIR       SINE           SINE
4821    chr1.33893330.33893899             MIR       SINE           SINE
4822    chr1.33902484.33903594           MER5B        DNA            DNA
4823    chr1.33902484.33903594          A-rich      Other Low_complexity
4824    chr1.33917972.33918932             L2c       LINE           LINE
4825    chr1.33917972.33918932            MIRb       SINE           SINE
4826    chr1.33925639.33926011             L2b       LINE           LINE
4827    chr1.33943777.33944546             L2c       LINE           LINE
4828    chr1.33943777.33944546           (AT)n      Other  Simple_repeat
4829    chr1.33943777.33944546           (AC)n      Other  Simple_repeat
4830    chr1.33943777.33944546          MER58A        DNA            DNA
4831    chr1.33943777.33944546            MIRb       SINE           SINE
4832    chr1.33971273.33971809            <NA>       <NA>           <NA>
4833    chr1.33973076.33973318            <NA>       <NA>           <NA>
4834    chr1.33974204.33974639             L2b       LINE           LINE
4835    chr1.33974204.33974639             MIR       SINE           SINE
4836    chr1.33985556.33986086            MIRb       SINE           SINE
4837    chr1.33985556.33986086             L2c       LINE           LINE
4838    chr1.33986333.33986719        (GGGAA)n      Other  Simple_repeat
4839    chr1.33986333.33986719            MIRb       SINE           SINE
4840    chr1.33997742.33997966         GA-rich      Other Low_complexity
4841    chr1.34014016.34014878             L2c       LINE           LINE
4842    chr1.34057383.34058242            MIRb       SINE           SINE
4843    chr1.34066748.34067466            <NA>       <NA>           <NA>
4844    chr1.34108390.34108576            MIRb       SINE           SINE
4845    chr1.34149330.34149887            <NA>       <NA>           <NA>
4846    chr1.34155859.34156377            MIRc       SINE           SINE
4847    chr1.34162966.34164151        (CAAAA)n      Other  Simple_repeat
4848    chr1.34162966.34164151       (CCGCCG)n      Other  Simple_repeat
4849    chr1.34164841.34165300          (GCG)n      Other  Simple_repeat
4850    chr1.34164841.34165300        (CGCGG)n      Other  Simple_repeat
4851    chr1.34189034.34189378           (GT)n      Other  Simple_repeat
4852    chr1.34189034.34189378     (TGTGTGCA)n      Other  Simple_repeat
4853    chr1.34189034.34189378           (GT)n      Other  Simple_repeat
4854    chr1.34199734.34200311             L2b       LINE           LINE
4855    chr1.34199734.34200311             L2c       LINE           LINE
4856    chr1.34266105.34266724           MER5B        DNA            DNA
4857    chr1.34266105.34266724           MER5A        DNA            DNA
4858    chr1.34268142.34268884            MIRb       SINE           SINE
4859    chr1.34268142.34268884            MIR3       SINE           SINE
4860    chr1.34320207.34320513           MLT1H        LTR            LTR
4861    chr1.34372005.34372623       (ACATAC)n      Other  Simple_repeat
4862    chr1.34372005.34372623             L2a       LINE           LINE
4863    chr1.34378870.34379376            <NA>       <NA>           <NA>
4864    chr1.34419728.34420157            <NA>       <NA>           <NA>
4865    chr1.34460183.34460620             MIR       SINE           SINE
4866    chr1.34460183.34460620            MIRb       SINE           SINE
4867    chr1.34478651.34478968           MLT1I        LTR            LTR
4868    chr1.34500395.34500734            <NA>       <NA>           <NA>
4869    chr1.34549259.34549688         L1PREC2       LINE           LINE
4870    chr1.34590146.34590612            <NA>       <NA>           <NA>
4871    chr1.34597729.34598296          LTR88b        LTR            LTR
4872    chr1.34631349.34632039      LTR104_Mam        LTR            LTR
4873    chr1.34631349.34632039             L2b       LINE           LINE
4874    chr1.34631349.34632039           LTR7B        LTR            LTR
4875    chr1.34637708.34638608           THE1B        LTR            LTR
4876    chr1.34637708.34638608           MER72        LTR            LTR
4877    chr1.34637708.34638608          AluSq2       SINE           SINE
4878    chr1.34637708.34638608           MER72        LTR            LTR
4879    chr1.34662992.34663578          MLT2B4        LTR            LTR
4880    chr1.34662992.34663578         GA-rich      Other Low_complexity
4881    chr1.34681231.34681755             L2b       LINE           LINE
4882    chr1.34682830.34683196           AluJr       SINE           SINE
4883    chr1.34684230.34684532            <NA>       <NA>           <NA>
4884    chr1.34688196.34688847           MER5A        DNA            DNA
4885    chr1.34709675.34709829            <NA>       <NA>           <NA>
4886    chr1.34742561.34743128              L2       LINE           LINE
4887    chr1.34749712.34750319           MLT1K        LTR            LTR
4888    chr1.34749712.34750319          LTR16C        LTR            LTR
4889    chr1.34762919.34764024              L2       LINE           LINE
4890    chr1.34762919.34764024             L2c       LINE           LINE
4891    chr1.34762919.34764024         (TTTG)n      Other  Simple_repeat
4892    chr1.34762919.34764024         LTR16A1        LTR            LTR
4893    chr1.34771070.34771378              L2       LINE           LINE
4894    chr1.34776913.34777341            <NA>       <NA>           <NA>
4895    chr1.34777958.34778209            <NA>       <NA>           <NA>
4896    chr1.34781124.34781771            MIRc       SINE           SINE
4897    chr1.34783691.34783893            <NA>       <NA>           <NA>
4898    chr1.34786388.34786989       (GGCTGG)n      Other  Simple_repeat
4899    chr1.34787908.34788351            <NA>       <NA>           <NA>
4900    chr1.34798878.34799298       Chap1_Mam        DNA            DNA
4901    chr1.34798878.34799298              L3       LINE           LINE
4902    chr1.34804987.34805242            <NA>       <NA>           <NA>
4903    chr1.34806182.34806880          MLT1A1        LTR            LTR
4904    chr1.34825522.34826054            MIRb       SINE           SINE
4905    chr1.34835696.34836160       (ACAGAG)n      Other  Simple_repeat
4906    chr1.34843194.34843849             L3b       LINE           LINE
4907    chr1.34851533.34852031            <NA>       <NA>           <NA>
4908    chr1.34852728.34853298        Charlie8        DNA            DNA
4909    chr1.34859054.34860132             L2c       LINE           LINE
4910    chr1.34859054.34860132            MIRb       SINE           SINE
4911    chr1.34865947.34866757          G-rich      Other Low_complexity
4912    chr1.34884925.34886294          G-rich      Other Low_complexity
4913    chr1.34924751.34925262            <NA>       <NA>           <NA>
4914    chr1.34928666.34929222           (AC)n      Other  Simple_repeat
4915    chr1.34928666.34929222        (GCCGG)n      Other  Simple_repeat
4916    chr1.34929900.34930189            <NA>       <NA>           <NA>
4917    chr1.34930205.34930516            <NA>       <NA>           <NA>
4918    chr1.34975277.34975687             L2a       LINE           LINE
4919    chr1.34976325.34977758            MIRb       SINE           SINE
4920    chr1.34976325.34977758       (CAGGCG)n      Other  Simple_repeat
4921    chr1.34976325.34977758       (CAGGCC)n      Other  Simple_repeat
4922    chr1.34976325.34977758             L2a       LINE           LINE
4923    chr1.34984346.34985742        (CCGCT)n      Other  Simple_repeat
4924    chr1.34984346.34985742            MIRc       SINE           SINE
4925    chr1.34984346.34985742             L2a       LINE           LINE
4926    chr1.35031135.35032239           AluSx       SINE           SINE
4927    chr1.35047225.35047840            <NA>       <NA>           <NA>
4928    chr1.35079100.35079929             MIR       SINE           SINE
4929    chr1.35079100.35079929          AluSx1       SINE           SINE
4930    chr1.35085349.35085865          Zaphod        DNA            DNA
4931    chr1.35144926.35145363       HERV3-int        LTR            LTR
4932    chr1.35176642.35177427            AluY       SINE           SINE
4933    chr1.35176642.35177427           AluSq       SINE           SINE
4934    chr1.35176642.35177427           AluJb       SINE           SINE
4935    chr1.35191753.35193497          (TGG)n      Other  Simple_repeat
4936    chr1.35191753.35193497          (GCG)n      Other  Simple_repeat
4937    chr1.35191753.35193497       (CCGCCA)n      Other  Simple_repeat
4938    chr1.35202034.35202605         (TTTA)n      Other  Simple_repeat
4939    chr1.35210242.35211084            <NA>       <NA>           <NA>
4940    chr1.35268411.35269288            <NA>       <NA>           <NA>
4941    chr1.35279138.35279553       MLT1C-int        LTR            LTR
4942    chr1.35287740.35288571           AluSg       SINE           SINE
4943    chr1.35287740.35288571           AluJo       SINE           SINE
4944    chr1.35287740.35288571      LTR104_Mam        LTR            LTR
4945    chr1.35288696.35289133             L2c       LINE           LINE
4946    chr1.35298364.35298967           AluJb       SINE           SINE
4947    chr1.35298364.35298967          LTR41C        LTR            LTR
4948    chr1.35298364.35298967           L1MEc       LINE           LINE
4949    chr1.35304889.35305271          AluSc5       SINE           SINE
4950    chr1.35304889.35305271           L1MEf       LINE           LINE
4951    chr1.35320011.35320461          MER21C        LTR            LTR
4952    chr1.35320011.35320461          MER21C        LTR            LTR
4953    chr1.35360035.35360504             L2c       LINE           LINE
4954    chr1.35448519.35448754            <NA>       <NA>           <NA>
4955    chr1.35449427.35449668            MIRc       SINE           SINE
4956    chr1.35450941.35451406         GA-rich      Other Low_complexity
4957    chr1.35452303.35452440            <NA>       <NA>           <NA>
4958    chr1.35475288.35475855           AluJr       SINE           SINE
4959    chr1.35475288.35475855             L2b       LINE           LINE
4960    chr1.35505867.35506462            MIRb       SINE           SINE
4961    chr1.35538314.35538786           AluSx       SINE           SINE
4962    chr1.35544949.35545474           L1MEc       LINE           LINE
4963    chr1.35556841.35558231          (GGA)n      Other  Simple_repeat
4964    chr1.35558362.35558896          (CTG)n      Other  Simple_repeat
4965    chr1.35564610.35565336             MIR       SINE           SINE
4966    chr1.35567939.35568221              L2       LINE           LINE
4967    chr1.35568932.35569306             L2c       LINE           LINE
4968    chr1.35573027.35573908            MIRc       SINE           SINE
4969    chr1.35575683.35575936       (TGTGTC)n      Other  Simple_repeat
4970    chr1.35575683.35575936         GA-rich      Other Low_complexity
4971    chr1.35577087.35578025            <NA>       <NA>           <NA>
4972    chr1.35588859.35589454           (TG)n      Other  Simple_repeat
4973    chr1.35590064.35590326       (GTGTGG)n      Other  Simple_repeat
4974    chr1.35590650.35591435            <NA>       <NA>           <NA>
4975    chr1.35640904.35642187           AluSp       SINE           SINE
4976    chr1.35640904.35642187           AluSp       SINE           SINE
4977    chr1.35650365.35650949 ERV3-16A3_I-int        LTR            LTR
4978    chr1.35650365.35650949 ERV3-16A3_I-int        LTR            LTR
4979    chr1.35650365.35650949 ERV3-16A3_I-int        LTR            LTR
4980    chr1.35660876.35661281           (TG)n      Other  Simple_repeat
4981    chr1.35660876.35661281           AluJr       SINE           SINE
4982    chr1.35707336.35708397            <NA>       <NA>           <NA>
4983    chr1.35715205.35715915            <NA>       <NA>           <NA>
4984    chr1.35717766.35718470            <NA>       <NA>           <NA>
4985    chr1.35718498.35719248             L2a       LINE           LINE
4986    chr1.35726654.35727443          LTR16A        LTR            LTR
4987    chr1.35769240.35770302          MER96B        DNA            DNA
4988    chr1.35807470.35809333          AluSx1       SINE           SINE
4989    chr1.35807470.35809333         (GGGA)n      Other  Simple_repeat
4990    chr1.35807470.35809333       (CCCGCG)n      Other  Simple_repeat
4991    chr1.35807470.35809333          (GGC)n      Other  Simple_repeat
4992    chr1.35807470.35809333       (CCCCGC)n      Other  Simple_repeat
4993    chr1.35807470.35809333          (GCG)n      Other  Simple_repeat
4994    chr1.35845861.35846103           MLT1I        LTR            LTR
4995    chr1.35876899.35877458           AluJb       SINE           SINE
4996    chr1.35876899.35877458             L2b       LINE           LINE
4997    chr1.35882865.35884077      (CTGGCAG)n      Other  Simple_repeat
4998    chr1.35882865.35884077          (GCG)n      Other  Simple_repeat
4999    chr1.35882865.35884077        (CCCGC)n      Other  Simple_repeat
5000    chr1.35886769.35887131           (GT)n      Other  Simple_repeat
5001    chr1.35886769.35887131             L2b       LINE           LINE
5002    chr1.35886769.35887131           (GT)n      Other  Simple_repeat
5003    chr1.35893939.35894811             L2b       LINE           LINE
5004    chr1.35915664.35916623           MER5A        DNA            DNA
5005    chr1.35915664.35916623             MIR       SINE           SINE
5006    chr1.35915664.35916623             MIR       SINE           SINE
5007    chr1.35915664.35916623           AluSz       SINE           SINE
5008    chr1.35917653.35917949         (GAGT)n      Other  Simple_repeat
5009    chr1.35921707.35922095            <NA>       <NA>           <NA>
5010    chr1.35930303.35931932              L2       LINE           LINE
5011    chr1.35930303.35931932            MIRc       SINE           SINE
5012    chr1.36008622.36009034            <NA>       <NA>           <NA>
5013    chr1.36034616.36035020          MER51A        LTR            LTR
5014    chr1.36034616.36035020            MIRb       SINE           SINE
5015    chr1.36088532.36089945       (GCGGCA)n      Other  Simple_repeat
5016    chr1.36088532.36089945        Tigger5b        DNA            DNA
5017    chr1.36088532.36089945        Tigger5b        DNA            DNA
5018    chr1.36088532.36089945        Tigger5b        DNA            DNA
5019    chr1.36088532.36089945              L2       LINE           LINE
5020    chr1.36088532.36089945              L2       LINE           LINE
5021    chr1.36096711.36097538            <NA>       <NA>           <NA>
5022    chr1.36099527.36100274          (CAG)n      Other  Simple_repeat
5023    chr1.36109105.36109461            MIRb       SINE           SINE
5024    chr1.36119372.36119883            MIRc       SINE           SINE
5025    chr1.36125633.36126158              L2       LINE           LINE
5026    chr1.36126248.36126757           (GT)n      Other  Simple_repeat
5027    chr1.36133525.36133870             MIR       SINE           SINE
5028    chr1.36134652.36135264            <NA>       <NA>           <NA>
5029    chr1.36149006.36149924            MIRb       SINE           SINE
5030    chr1.36150637.36151190            <NA>       <NA>           <NA>
5031    chr1.36155516.36157431          G-rich      Other Low_complexity
5032    chr1.36155516.36157431          (GCC)n      Other  Simple_repeat
5033    chr1.36155516.36157431         GA-rich      Other Low_complexity
5034    chr1.36155516.36157431          G-rich      Other Low_complexity
5035    chr1.36161784.36162474           (TG)n      Other  Simple_repeat
5036    chr1.36161784.36162474       (CTCTGC)n      Other  Simple_repeat
5037    chr1.36161784.36162474            MIRb       SINE           SINE
5038    chr1.36162902.36163153             L2c       LINE           LINE
5039    chr1.36167063.36167778        L2-1_AMi       LINE           LINE
5040    chr1.36167063.36167778            MIRb       SINE           SINE
5041    chr1.36168386.36168843            MIRb       SINE           SINE
5042    chr1.36168386.36168843             MIR       SINE           SINE
5043    chr1.36175346.36176462            <NA>       <NA>           <NA>
5044    chr1.36179027.36179443          G-rich      Other Low_complexity
5045    chr1.36187711.36188701           AluJo       SINE           SINE
5046    chr1.36187711.36188701            MIRb       SINE           SINE
5047    chr1.36203405.36204625           MER20        DNA            DNA
5048    chr1.36217612.36217938         Tigger1        DNA            DNA
5049    chr1.36223784.36225304            MIRc       SINE           SINE
5050    chr1.36231002.36231519            <NA>       <NA>           <NA>
5051    chr1.36240193.36240677          MLT2B3        LTR            LTR
5052    chr1.36244534.36244859          AluSc5       SINE           SINE
5053    chr1.36248369.36249080           AluJr       SINE           SINE
5054    chr1.36248369.36249080           AluJr       SINE           SINE
5055    chr1.36248369.36249080             L2c       LINE           LINE
5056    chr1.36248369.36249080           AluSx       SINE           SINE
5057    chr1.36253636.36253752           AluJr       SINE           SINE
5058    chr1.36257216.36257653             L2a       LINE           LINE
5059    chr1.36266404.36266770            <NA>       <NA>           <NA>
5060    chr1.36272376.36272913              L3       LINE           LINE
5061    chr1.36273036.36273570            L1M4       LINE           LINE
5062    chr1.36275530.36275988            AluY       SINE           SINE
5063    chr1.36275530.36275988           AluSp       SINE           SINE
5064    chr1.36275530.36275988            L1M4       LINE           LINE
5065    chr1.36275530.36275988           AluJo       SINE           SINE
5066    chr1.36279088.36279662            <NA>       <NA>           <NA>
5067    chr1.36285441.36285958            <NA>       <NA>           <NA>
5068    chr1.36290503.36291229          AluSx1       SINE           SINE
5069    chr1.36290503.36291229           AluJb       SINE           SINE
5070    chr1.36299915.36300483        MIR1_Amn       SINE           SINE
5071    chr1.36300602.36300845             L2c       LINE           LINE
5072    chr1.36306012.36307507            <NA>       <NA>           <NA>
5073    chr1.36321081.36322098       (GGCCTG)n      Other  Simple_repeat
5074    chr1.36322994.36324178        (GGCGG)n      Other  Simple_repeat
5075    chr1.36322994.36324178          G-rich      Other Low_complexity
5076    chr1.36322994.36324178        (GGCGG)n      Other  Simple_repeat
5077    chr1.36322994.36324178            MIRb       SINE           SINE
5078    chr1.36327445.36327700            <NA>       <NA>           <NA>
5079    chr1.36342380.36343455            MIRb       SINE           SINE
5080    chr1.36349434.36349686            MIRb       SINE           SINE
5081    chr1.36350726.36351927            <NA>       <NA>           <NA>
5082    chr1.36352227.36352923            MIRb       SINE           SINE
5083    chr1.36352227.36352923             L2c       LINE           LINE
5084    chr1.36353051.36353196            <NA>       <NA>           <NA>
5085    chr1.36367583.36368085            <NA>       <NA>           <NA>
5086    chr1.36369097.36369305            <NA>       <NA>           <NA>
5087    chr1.36373482.36375066            <NA>       <NA>           <NA>
5088    chr1.36384925.36387119            MIRb       SINE           SINE
5089    chr1.36384925.36387119      (CCCGCTC)n      Other  Simple_repeat
5090    chr1.36384925.36387119      (CCCGCAC)n      Other  Simple_repeat
5091    chr1.36397234.36398118            MIRc       SINE           SINE
5092    chr1.36397234.36398118             L2a       LINE           LINE
5093    chr1.36400661.36401707         LTR2752        LTR            LTR
5094    chr1.36408527.36408819          MLT1N2        LTR            LTR
5095    chr1.36411942.36412239          MER51A        LTR            LTR
5096    chr1.36420848.36421540             L2c       LINE           LINE
5097    chr1.36448574.36449076             L2c       LINE           LINE
5098    chr1.36450055.36450928          G-rich      Other Low_complexity
5099    chr1.36450055.36450928            MIRb       SINE           SINE
5100    chr1.36458714.36459206           AluJb       SINE           SINE
5101    chr1.36463511.36464902        (CCCCA)n      Other  Simple_repeat
5102    chr1.36463511.36464902            MIRb       SINE           SINE
5103    chr1.36481469.36482513             MIR       SINE           SINE
5104    chr1.36516435.36517081            MIRb       SINE           SINE
5105    chr1.36524452.36524775            <NA>       <NA>           <NA>
5106    chr1.36528509.36528981             MIR       SINE           SINE
5107    chr1.36542879.36543531            MIRb       SINE           SINE
5108    chr1.36542879.36543531              L2       LINE           LINE
5109    chr1.36553622.36554365             L2a       LINE           LINE
5110    chr1.36553622.36554365            MIR3       SINE           SINE
5111    chr1.36575910.36576575            <NA>       <NA>           <NA>
5112    chr1.36603587.36603840            <NA>       <NA>           <NA>
5113    chr1.36609173.36609687            <NA>       <NA>           <NA>
5114    chr1.36613426.36614137       (GACACA)n      Other  Simple_repeat
5115    chr1.36637951.36638613            <NA>       <NA>           <NA>
5116    chr1.36650405.36650800           MLT1D        LTR            LTR
5117    chr1.36703659.36704194            <NA>       <NA>           <NA>
5118    chr1.36752990.36753391      LTR104_Mam        LTR            LTR
5119    chr1.36784414.36784798           MLT1I        LTR            LTR
5120    chr1.36814626.36815019         (ACAT)n      Other  Simple_repeat
5121    chr1.36816381.36816661            <NA>       <NA>           <NA>
5122    chr1.36865973.36866600           AluJr       SINE           SINE
5123    chr1.36865973.36866600            MIRb       SINE           SINE
5124    chr1.36865973.36866600             MIR       SINE           SINE
5125    chr1.36924190.36924817            <NA>       <NA>           <NA>
5126    chr1.36960314.36961023             L2a       LINE           LINE
5127    chr1.36966142.36966711            <NA>       <NA>           <NA>
5128    chr1.36984758.36984974            <NA>       <NA>           <NA>
5129    chr1.37006214.37006640            <NA>       <NA>           <NA>
5130    chr1.37032803.37033736        (GCCCG)n      Other  Simple_repeat
5131    chr1.37034341.37035009      (CTCCCCC)n      Other  Simple_repeat
5132    chr1.37034341.37035009       (CACTCA)n      Other  Simple_repeat
5133    chr1.37034341.37035009     (GCGAGAGC)n      Other  Simple_repeat
5134    chr1.37038300.37038615            <NA>       <NA>           <NA>
5135    chr1.37052206.37052503            <NA>       <NA>           <NA>
5136    chr1.37071768.37072299             L2b       LINE           LINE
5137    chr1.37071768.37072299             L2b       LINE           LINE
5138    chr1.37073861.37074148            <NA>       <NA>           <NA>
5139    chr1.37108813.37109167            <NA>       <NA>           <NA>
5140    chr1.37110494.37111117           LTR89        LTR            LTR
5141    chr1.37110494.37111117             L2c       LINE           LINE
5142    chr1.37118893.37119272         GA-rich      Other Low_complexity
5143    chr1.37153411.37153682            <NA>       <NA>           <NA>
5144    chr1.37174818.37175281           LTR33        LTR            LTR
5145    chr1.37255342.37255873          (TGT)n      Other  Simple_repeat
5146    chr1.37318918.37319639       (GTGTGT)n      Other  Simple_repeat
5147    chr1.37318918.37319639           (TG)n      Other  Simple_repeat
5148    chr1.37362500.37363284           L1MD3       LINE           LINE
5149    chr1.37362500.37363284             L2b       LINE           LINE
5150    chr1.37395079.37395573           MLT1O        LTR            LTR
5151    chr1.37410708.37411179            <NA>       <NA>           <NA>
5152    chr1.37420435.37420844           AluJb       SINE           SINE
5153    chr1.37420435.37420844             L2c       LINE           LINE
5154    chr1.37420435.37420844            MER2        DNA            DNA
5155    chr1.37425280.37425694          MER63A        DNA            DNA
5156    chr1.37425280.37425694      (CACTCCA)n      Other  Simple_repeat
5157    chr1.37425280.37425694           AluSx       SINE           SINE
5158    chr1.37434220.37434927           MER5B        DNA            DNA
5159    chr1.37434220.37434927             L2c       LINE           LINE
5160    chr1.37454697.37455400             MIR       SINE           SINE
5161    chr1.37471435.37472154             L2c       LINE           LINE
5162    chr1.37474273.37475021         GA-rich      Other Low_complexity
5163    chr1.37476591.37477691      (CCAGCCC)n      Other  Simple_repeat
5164    chr1.37479690.37480114            <NA>       <NA>           <NA>
5165    chr1.37487136.37487629            <NA>       <NA>           <NA>
5166    chr1.37498982.37499610           AluJb       SINE           SINE
5167    chr1.37498982.37499610             L2a       LINE           LINE
5168    chr1.37513835.37515304       Charlie4z        DNA            DNA
5169    chr1.37513835.37515304       (TCCCCC)n      Other  Simple_repeat
5170    chr1.37513835.37515304       (CCGCTC)n      Other  Simple_repeat
5171    chr1.37513835.37515304        (CGCCG)n      Other  Simple_repeat
5172    chr1.37513835.37515304              L2       LINE           LINE
5173    chr1.37534222.37534878          FLAM_A       SINE           SINE
5174    chr1.37553769.37554451          AluSz6       SINE           SINE
5175    chr1.37556675.37557211            MIRc       SINE           SINE
5176    chr1.37561930.37562062            <NA>       <NA>           <NA>
5177    chr1.37576522.37576874           AluSx       SINE           SINE
5178    chr1.37595394.37596487             L2a       LINE           LINE
5179    chr1.37595394.37596487             L2a       LINE           LINE
5180    chr1.37603074.37603587          MER58B        DNA            DNA
5181    chr1.37603074.37603587          LTR88a        LTR            LTR
5182    chr1.37634296.37635081            <NA>       <NA>           <NA>
5183    chr1.37663540.37664167            <NA>       <NA>           <NA>
5184    chr1.37682326.37682656            <NA>       <NA>           <NA>
5185    chr1.37689795.37690764          AluSx1       SINE           SINE
5186    chr1.37691492.37692875            <NA>       <NA>           <NA>
5187    chr1.37730129.37730489          LTR85a        LTR            LTR
5188    chr1.37741161.37741594            MIRb       SINE           SINE
5189    chr1.37741161.37741594            L1M6       LINE           LINE
5190    chr1.37752868.37753368        (GGCGG)n      Other  Simple_repeat
5191    chr1.37756367.37756737              L3       LINE           LINE
5192    chr1.37764253.37764718       (CTCCAC)n      Other  Simple_repeat
5193    chr1.37793803.37794339            <NA>       <NA>           <NA>
5194    chr1.37795359.37795607            <NA>       <NA>           <NA>
5195    chr1.37807348.37809265              L2       LINE           LINE
5196    chr1.37807348.37809265             L2b       LINE           LINE
5197    chr1.37807348.37809265        MIR1_Amn       SINE           SINE
5198    chr1.37807348.37809265          G-rich      Other Low_complexity
5199    chr1.37807348.37809265        (TGGGG)n      Other  Simple_repeat
5200    chr1.37811188.37811347            <NA>       <NA>           <NA>
5201    chr1.37858974.37860470            <NA>       <NA>           <NA>
5202    chr1.37875893.37876156           AluJb       SINE           SINE
5203    chr1.37884369.37884683        (TTTCC)n      Other  Simple_repeat
5204    chr1.37884369.37884683           AluJo       SINE           SINE
5205    chr1.37884369.37884683           AluSg       SINE           SINE
5206    chr1.37915144.37915645          MER46C        DNA            DNA
5207    chr1.37915144.37915645          L1ME4a       LINE           LINE
5208    chr1.37930719.37930961            <NA>       <NA>           <NA>
5209    chr1.37931148.37932171            MIR3       SINE           SINE
5210    chr1.37946051.37946447            MIRb       SINE           SINE
5211    chr1.37946609.37947240        (CCTGC)n      Other  Simple_repeat
5212    chr1.37954294.37954605            <NA>       <NA>           <NA>
5213    chr1.37958554.37959215          MER105        DNA            DNA
5214    chr1.37958554.37959215      Charlie15a        DNA            DNA
5215    chr1.37958554.37959215           AluJb       SINE           SINE
5216    chr1.37974996.37975624             L2c       LINE           LINE
5217    chr1.37974996.37975624          AluSz6       SINE           SINE
5218    chr1.37989364.37990340            MIR3       SINE           SINE
5219    chr1.37999250.38000185         OldhAT1        DNA            DNA
5220    chr1.38004532.38005014       (GTCTCT)n      Other  Simple_repeat
5221    chr1.38004532.38005014        Arthur1B        DNA            DNA
5222    chr1.38005173.38006465        (CCCCT)n      Other  Simple_repeat
5223    chr1.38005173.38006465          G-rich      Other Low_complexity
5224    chr1.38005173.38006465         GA-rich      Other Low_complexity
5225    chr1.38012294.38013280           AluSg       SINE           SINE
5226    chr1.38020417.38020978          AluSg7       SINE           SINE
5227    chr1.38022942.38023427          MER105        DNA            DNA
5228    chr1.38026714.38027053          AluSx1       SINE           SINE
5229    chr1.38029108.38030723       (GAGCGG)n      Other  Simple_repeat
5230    chr1.38029108.38030723      UCON80_AMi      Other        Unknown
5231    chr1.38040122.38040849           (GT)n      Other  Simple_repeat
5232    chr1.38040122.38040849           (AG)n      Other  Simple_repeat
5233    chr1.38045550.38048607          (GCC)n      Other  Simple_repeat
5234    chr1.38045550.38048607          (CCG)n      Other  Simple_repeat
5235    chr1.38045550.38048607          (CCG)n      Other  Simple_repeat
5236    chr1.38045550.38048607          (CCG)n      Other  Simple_repeat
5237    chr1.38055221.38055694             L2b       LINE           LINE
5238    chr1.38064155.38064858       (AGCTGG)n      Other  Simple_repeat
5239    chr1.38064155.38064858           LTR16        LTR            LTR
5240    chr1.38068283.38068601         (GGGA)n      Other  Simple_repeat
5241    chr1.38071830.38072221            MIRb       SINE           SINE
5242    chr1.38074008.38074387         GA-rich      Other Low_complexity
5243    chr1.38076167.38076474            MIRb       SINE           SINE
5244    chr1.38088339.38088807             L2a       LINE           LINE
5245    chr1.38117644.38118279            <NA>       <NA>           <NA>
5246    chr1.38123353.38123643            MIR3       SINE           SINE
5247    chr1.38129936.38130319           LTR33        LTR            LTR
5248    chr1.38135628.38135873            <NA>       <NA>           <NA>
5249    chr1.38138355.38139081            <NA>       <NA>           <NA>
5250    chr1.38207158.38207708         (GGCA)n      Other  Simple_repeat
5251    chr1.38217303.38217840            <NA>       <NA>           <NA>
5252    chr1.38221022.38221618          L1ME4a       LINE           LINE
5253    chr1.38221022.38221618            (T)n      Other  Simple_repeat
5254    chr1.38261333.38261995             L2b       LINE           LINE
5255    chr1.38291972.38292755            MIR3       SINE           SINE
5256    chr1.38291972.38292755             L2b       LINE           LINE
5257    chr1.38308842.38309204          LTR16D        LTR            LTR
5258    chr1.38308842.38309204          LTR16D        LTR            LTR
5259    chr1.38444870.38445581            <NA>       <NA>           <NA>
5260    chr1.38451496.38452039            (T)n      Other  Simple_repeat
5261    chr1.38476157.38477004       (CCGCGC)n      Other  Simple_repeat
5262    chr1.38489900.38490098           LTR79        LTR            LTR
5263    chr1.38507588.38508052          AluSq2       SINE           SINE
5264    chr1.38507588.38508052          (TAA)n      Other  Simple_repeat
5265    chr1.38507588.38508052            MIR3       SINE           SINE
5266    chr1.38578255.38578946          G-rich      Other Low_complexity
5267    chr1.38578255.38578946            MIRc       SINE           SINE
5268    chr1.38586934.38587606      MamGyp-int        LTR            LTR
5269    chr1.38586934.38587606           AluJb       SINE           SINE
5270    chr1.38608199.38608637           MER20        DNA            DNA
5271    chr1.38624291.38624837            MIRb       SINE           SINE
5272    chr1.38690913.38691263          MER44B        DNA            DNA
5273    chr1.38690913.38691263           L1ME2       LINE           LINE
5274    chr1.38728251.38728786            MIRc       SINE           SINE
5275    chr1.38740446.38741722             L2b       LINE           LINE
5276    chr1.38740446.38741722            MIRb       SINE           SINE
5277    chr1.38789845.38790291            <NA>       <NA>           <NA>
5278    chr1.38804063.38804521            <NA>       <NA>           <NA>
5279    chr1.38817601.38818947            MIRb       SINE           SINE
5280    chr1.38831997.38832333          MLT1J2        LTR            LTR
5281    chr1.38835136.38835548            <NA>       <NA>           <NA>
5282    chr1.38858890.38860564       (GCCTCC)n      Other  Simple_repeat
5283    chr1.38858890.38860564          (GCC)n      Other  Simple_repeat
5284    chr1.38858890.38860564          (GCC)n      Other  Simple_repeat
5285    chr1.38858890.38860564        (CAGGC)n      Other  Simple_repeat
5286    chr1.38858890.38860564          (GCC)n      Other  Simple_repeat
5287    chr1.38872731.38873877            <NA>       <NA>           <NA>
5288    chr1.38875825.38876071            <NA>       <NA>           <NA>
5289    chr1.38891855.38892194            <NA>       <NA>           <NA>
5290    chr1.38899736.38900050           L1MEc       LINE           LINE
5291    chr1.38915324.38915966           AluSz       SINE           SINE
5292    chr1.38915324.38915966            MIRc       SINE           SINE
5293    chr1.38920902.38921382            AluY       SINE           SINE
5294    chr1.38920902.38921382           L1MB5       LINE           LINE
5295    chr1.38920902.38921382             MIR       SINE           SINE
5296    chr1.38920902.38921382           AluSz       SINE           SINE
5297    chr1.38923558.38923925            <NA>       <NA>           <NA>
5298    chr1.38931404.38932119            AluY       SINE           SINE
5299    chr1.38931404.38932119            (A)n      Other  Simple_repeat
5300    chr1.38931404.38932119          MLT1H1        LTR            LTR
5301    chr1.38943658.38944149           AluJo       SINE           SINE
5302    chr1.38943658.38944149             L2b       LINE           LINE
5303    chr1.38943658.38944149           AluSz       SINE           SINE
5304    chr1.38958923.38959302            MSTD        LTR            LTR
5305    chr1.38964170.38964529            <NA>       <NA>           <NA>
5306    chr1.38986777.38987009        L4_B_Mam       LINE           LINE
5307    chr1.38990559.38992645       Charlie4z        DNA            DNA
5308    chr1.38990559.38992645          G-rich      Other Low_complexity
5309    chr1.39002694.39003667            AluY       SINE           SINE
5310    chr1.39002694.39003667             MIR       SINE           SINE
5311    chr1.39014196.39014469        (AGCAG)n      Other  Simple_repeat
5312    chr1.39014196.39014469           LTR52        LTR            LTR
5313    chr1.39025774.39027153           (CT)n      Other  Simple_repeat
5314    chr1.39025774.39027153           AluJb       SINE           SINE
5315    chr1.39025774.39027153              L2       LINE           LINE
5316    chr1.39025774.39027153           AluSp       SINE           SINE
5317    chr1.39047118.39048265         MER102c        DNA            DNA
5318    chr1.39047118.39048265           AluJb       SINE           SINE
5319    chr1.39060507.39061192          AluSz6       SINE           SINE
5320    chr1.39060507.39061192          AluYm1       SINE           SINE
5321    chr1.39060507.39061192           L1MD2       LINE           LINE
5322    chr1.39060507.39061192           AluSz       SINE           SINE
5323    chr1.39076152.39076913           AluSx       SINE           SINE
5324    chr1.39076152.39076913             L2c       LINE           LINE
5325    chr1.39080746.39081146            <NA>       <NA>           <NA>
5326    chr1.39081357.39082133        (CCGCT)n      Other  Simple_repeat
5327    chr1.39081357.39082133          (CGC)n      Other  Simple_repeat
5328    chr1.39086465.39087578            <NA>       <NA>           <NA>
5329    chr1.39092251.39092655            MIRb       SINE           SINE
5330    chr1.39092251.39092655          MER91C        DNA            DNA
5331    chr1.39092251.39092655           L1MC5       LINE           LINE
5332    chr1.39098369.39099149            MIRb       SINE           SINE
5333    chr1.39098369.39099149            MIRc       SINE           SINE
5334    chr1.39100312.39100556            <NA>       <NA>           <NA>
5335    chr1.39104562.39106665          (GCC)n      Other  Simple_repeat
5336    chr1.39104562.39106665          (GGA)n      Other  Simple_repeat
5337    chr1.39110762.39111240           AluJb       SINE           SINE
5338    chr1.39115283.39115714             L2c       LINE           LINE
5339    chr1.39117126.39117720           (GT)n      Other  Simple_repeat
5340    chr1.39118075.39118570            <NA>       <NA>           <NA>
5341    chr1.39129582.39129896            <NA>       <NA>           <NA>
5342    chr1.39132412.39133370            <NA>       <NA>           <NA>
5343    chr1.39135788.39136146           (AC)n      Other  Simple_repeat
5344    chr1.39141082.39141444             MIR       SINE           SINE
5345    chr1.39141082.39141444           MER5A        DNA            DNA
5346    chr1.39141082.39141444             MIR       SINE           SINE
5347    chr1.39141956.39143020            <NA>       <NA>           <NA>
5348    chr1.39145453.39145831             L2c       LINE           LINE
5349    chr1.39149079.39149294           AluSz       SINE           SINE
5350    chr1.39154483.39155216            <NA>       <NA>           <NA>
5351    chr1.39159192.39159507            <NA>       <NA>           <NA>
5352    chr1.39164927.39165694            <NA>       <NA>           <NA>
5353    chr1.39167661.39168431           AluSp       SINE           SINE
5354    chr1.39167661.39168431          AluSx1       SINE           SINE
5355    chr1.39167661.39168431             L2c       LINE           LINE
5356    chr1.39167661.39168431            MIRb       SINE           SINE
5357    chr1.39178314.39179609            MIRb       SINE           SINE
5358    chr1.39183707.39184899            <NA>       <NA>           <NA>
5359    chr1.39185687.39186084            <NA>       <NA>           <NA>
5360    chr1.39189581.39189930       (CTTTCT)n      Other  Simple_repeat
5361    chr1.39191548.39192720          AluSz6       SINE           SINE
5362    chr1.39204435.39205967      (CCTCTTC)n      Other  Simple_repeat
5363    chr1.39213575.39215255           AluSx       SINE           SINE
5364    chr1.39215466.39215842            <NA>       <NA>           <NA>
5365    chr1.39224588.39225261             L2b       LINE           LINE
5366    chr1.39224588.39225261          AluJr4       SINE           SINE
5367    chr1.39224588.39225261          AluYb8       SINE           SINE
5368    chr1.39230444.39231166            <NA>       <NA>           <NA>
5369    chr1.39234994.39235936           SVA_D Retroposon     Retroposon
5370    chr1.39234994.39235936           AluJr       SINE           SINE
5371    chr1.39238165.39238841            <NA>       <NA>           <NA>
5372    chr1.39254531.39254884          A-rich      Other Low_complexity
5373    chr1.39255132.39255632            MIR3       SINE           SINE
5374    chr1.39255132.39255632             L2c       LINE           LINE
5375    chr1.39256219.39256752        MIR1_Amn       SINE           SINE
5376    chr1.39256219.39256752              L2       LINE           LINE
5377    chr1.39256219.39256752           MER81        DNA            DNA
5378    chr1.39258379.39259189            <NA>       <NA>           <NA>
5379    chr1.39268934.39269685            <NA>       <NA>           <NA>
5380    chr1.39272016.39272628            <NA>       <NA>           <NA>
5381    chr1.39276158.39276427           AluJo       SINE           SINE
5382    chr1.39282661.39283154             L2a       LINE           LINE
5383    chr1.39293374.39293769            <NA>       <NA>           <NA>
5384    chr1.39295742.39296329           (GT)n      Other  Simple_repeat
5385    chr1.39295742.39296329           MLT1H        LTR            LTR
5386    chr1.39317939.39318632            <NA>       <NA>           <NA>
5387    chr1.39332216.39332587            <NA>       <NA>           <NA>
5388    chr1.39339933.39340403            MIRc       SINE           SINE
5389    chr1.39344332.39344784          AluSx1       SINE           SINE
5390    chr1.39344332.39344784           MER50        LTR            LTR
5391    chr1.39346987.39347412            <NA>       <NA>           <NA>
5392    chr1.39360820.39361270            <NA>       <NA>           <NA>
5393    chr1.39378402.39378635            <NA>       <NA>           <NA>
5394    chr1.39381732.39382101           AluJr       SINE           SINE
5395    chr1.39385308.39385922          AluSz6       SINE           SINE
5396    chr1.39387522.39387776            <NA>       <NA>           <NA>
5397    chr1.39391679.39392569            <NA>       <NA>           <NA>
5398    chr1.39395458.39395833            <NA>       <NA>           <NA>
5399    chr1.39398368.39399145           AluJb       SINE           SINE
5400    chr1.39398368.39399145           MER20        DNA            DNA
5401    chr1.39408384.39409830          G-rich      Other Low_complexity
5402    chr1.39408384.39409830       (TCGTCC)n      Other  Simple_repeat
5403    chr1.39408384.39409830       (CCCCGG)n      Other  Simple_repeat
5404    chr1.39408384.39409830       (TCGTCC)n      Other  Simple_repeat
5405    chr1.39408384.39409830        (GGCGC)n      Other  Simple_repeat
5406    chr1.39408384.39409830         (AGCC)n      Other  Simple_repeat
5407    chr1.39410872.39411379            <NA>       <NA>           <NA>
5408    chr1.39412645.39413229            <NA>       <NA>           <NA>
5409    chr1.39427463.39427620            <NA>       <NA>           <NA>
5410    chr1.39428033.39428281            <NA>       <NA>           <NA>
5411    chr1.39431855.39432241           AluJr       SINE           SINE
5412    chr1.39434922.39435392            <NA>       <NA>           <NA>
5413    chr1.39449520.39449932            AluY       SINE           SINE
5414    chr1.39449520.39449932           AluJr       SINE           SINE
5415    chr1.39449520.39449932          AluSx4       SINE           SINE
5416    chr1.39462143.39462580           AluJb       SINE           SINE
5417    chr1.39471084.39471597            <NA>       <NA>           <NA>
5418    chr1.39474840.39475108             L2c       LINE           LINE
5419    chr1.39475372.39476020           AluJb       SINE           SINE
5420    chr1.39475372.39476020             L2c       LINE           LINE
5421    chr1.39477460.39477867           AluJb       SINE           SINE
5422    chr1.39477460.39477867             L2c       LINE           LINE
5423    chr1.39477460.39477867            MIRc       SINE           SINE
5424    chr1.39481365.39481799            <NA>       <NA>           <NA>
5425    chr1.39489435.39489952            <NA>       <NA>           <NA>
5426    chr1.39490584.39492165             MIR       SINE           SINE
5427    chr1.39490584.39492165             L2a       LINE           LINE
5428    chr1.39490584.39492165       (CGGCCC)n      Other  Simple_repeat
5429    chr1.39490584.39492165       (AGCGTC)n      Other  Simple_repeat
5430    chr1.39490584.39492165      (CCCGCCT)n      Other  Simple_repeat
5431    chr1.39499423.39500100             L2a       LINE           LINE
5432    chr1.39507277.39507586            <NA>       <NA>           <NA>
5433    chr1.39508984.39509671            <NA>       <NA>           <NA>
5434    chr1.39525647.39526381          AluSx1       SINE           SINE
5435    chr1.39534827.39535091           AluJr       SINE           SINE
5436    chr1.39534827.39535091           L1MB8       LINE           LINE
5437    chr1.39534827.39535091           AluJr       SINE           SINE
5438    chr1.39535802.39536060            AluY       SINE           SINE
5439    chr1.39535802.39536060           L1MB8       LINE           LINE
5440    chr1.39535802.39536060          AluSz6       SINE           SINE
5441    chr1.39538949.39539505             L2a       LINE           LINE
5442    chr1.39538949.39539505        L2-1_AMi       LINE           LINE
5443    chr1.39538949.39539505          MER20B        DNA            DNA
5444    chr1.39540287.39540957             L2a       LINE           LINE
5445    chr1.39540287.39540957             L2a       LINE           LINE
5446    chr1.39559241.39559841            AluY       SINE           SINE
5447    chr1.39564351.39564616            <NA>       <NA>           <NA>
5448    chr1.39566371.39567036            <NA>       <NA>           <NA>
5449    chr1.39571113.39571380            <NA>       <NA>           <NA>
5450    chr1.39574145.39577047             MIR       SINE           SINE
5451    chr1.39574145.39577047          G-rich      Other Low_complexity
5452    chr1.39574145.39577047         (GGAC)n      Other  Simple_repeat
5453    chr1.39574145.39577047       (TTTTTC)n      Other  Simple_repeat
5454    chr1.39574145.39577047          (GCG)n      Other  Simple_repeat
5455    chr1.39574145.39577047        (CGGCG)n      Other  Simple_repeat
5456    chr1.39574145.39577047          MER20B        DNA            DNA
5457    chr1.39605951.39606580          MLT2B4        LTR            LTR
5458    chr1.39605951.39606580          AluYa5       SINE           SINE
5459    chr1.39609502.39610409          MLT2C2        LTR            LTR
5460    chr1.39609502.39610409             L2a       LINE           LINE
5461    chr1.39617532.39618131             L2a       LINE           LINE
5462    chr1.39617532.39618131            MIRb       SINE           SINE
5463    chr1.39625269.39626037            <NA>       <NA>           <NA>
5464    chr1.39632760.39633364      (CCTCGCC)n      Other  Simple_repeat
5465    chr1.39632760.39633364          G-rich      Other Low_complexity
5466    chr1.39632760.39633364      (GCCCGCC)n      Other  Simple_repeat
5467    chr1.39639313.39640208        (CCCGG)n      Other  Simple_repeat
5468    chr1.39646316.39647141          (CCT)n      Other  Simple_repeat
5469    chr1.39653311.39654096          MER117        DNA            DNA
5470    chr1.39657990.39658303            <NA>       <NA>           <NA>
5471    chr1.39671518.39673060      (GAGCCCA)n      Other  Simple_repeat
5472    chr1.39671518.39673060          (GCT)n      Other  Simple_repeat
5473    chr1.39691181.39691740          G-rich      Other Low_complexity
5474    chr1.39695169.39695332           LTR89        LTR            LTR
5475    chr1.39698895.39699137          LTR33B        LTR            LTR
5476    chr1.39701125.39702256           LTR46        LTR            LTR
5477    chr1.39701125.39702256           (CA)n      Other  Simple_repeat
5478    chr1.39701125.39702256           MLT1O        LTR            LTR
5479    chr1.39701125.39702256            MIRb       SINE           SINE
5480    chr1.39711271.39711915          MLT2C2        LTR            LTR
5481    chr1.39711271.39711915             L2a       LINE           LINE
5482    chr1.39711271.39711915           LTR50        LTR            LTR
5483    chr1.39711271.39711915          MER74A        LTR            LTR
5484    chr1.39720091.39720586             MIR       SINE           SINE
5485    chr1.39720091.39720586           AluJo       SINE           SINE
5486    chr1.39733095.39733482            <NA>       <NA>           <NA>
5487    chr1.39738611.39739577          MER58B        DNA            DNA
5488    chr1.39761612.39762059             L2a       LINE           LINE
5489    chr1.39788609.39789787      (CGGCGGG)n      Other  Simple_repeat
5490    chr1.39788609.39789787          G-rich      Other Low_complexity
5491    chr1.39788609.39789787          G-rich      Other Low_complexity
5492    chr1.39788609.39789787             L2a       LINE           LINE
5493    chr1.39788609.39789787             MIR       SINE           SINE
5494    chr1.39799108.39799578            MIRb       SINE           SINE
5495    chr1.39799693.39800206            MIR3       SINE           SINE
5496    chr1.39799693.39800206             MIR       SINE           SINE
5497    chr1.39816067.39817136            MIRc       SINE           SINE
5498    chr1.39816067.39817136             MIR       SINE           SINE
5499    chr1.39816067.39817136            MIR3       SINE           SINE
5500    chr1.39832303.39832720           AluJr       SINE           SINE
5501    chr1.39845573.39846543            MIRb       SINE           SINE
5502    chr1.39882698.39883815            MIRb       SINE           SINE
5503    chr1.39882698.39883815            MIRb       SINE           SINE
5504    chr1.39882698.39883815          AluSx1       SINE           SINE
5505    chr1.39892692.39893576            MIRb       SINE           SINE
5506    chr1.39895148.39895396            MIRc       SINE           SINE
5507    chr1.39899074.39899251            <NA>       <NA>           <NA>
5508    chr1.39900789.39902628       (CGTAGT)n      Other  Simple_repeat
5509    chr1.39900789.39902628          G-rich      Other Low_complexity
5510    chr1.39900789.39902628            MIRb       SINE           SINE
5511    chr1.39919412.39920120          MER41A        LTR            LTR
5512    chr1.39919412.39920120          MER63B        DNA            DNA
5513    chr1.39919412.39920120           AluJo       SINE           SINE
5514    chr1.39952246.39953047           THE1D        LTR            LTR
5515    chr1.39952246.39953047           AluJo       SINE           SINE
5516    chr1.39952246.39953047            MIRb       SINE           SINE
5517    chr1.39952246.39953047            MIRb       SINE           SINE
5518    chr1.39952246.39953047              L3       LINE           LINE
5519    chr1.39952246.39953047            MIRb       SINE           SINE
5520    chr1.39954917.39955890            <NA>       <NA>           <NA>
5521    chr1.39969198.39969570            <NA>       <NA>           <NA>
5522    chr1.39970122.39970588           AluJb       SINE           SINE
5523    chr1.39970122.39970588            MIRb       SINE           SINE
5524    chr1.39971239.39971529             MIR       SINE           SINE
5525    chr1.39973441.39974066             L2a       LINE           LINE
5526    chr1.39973441.39974066           AluJo       SINE           SINE
5527    chr1.39976774.39977477          LTR10D        LTR            LTR
5528    chr1.39976774.39977477            MER3        DNA            DNA
5529    chr1.39976774.39977477             L2b       LINE           LINE
5530    chr1.39981874.39982408           AluJo       SINE           SINE
5531    chr1.39981874.39982408         (TTCC)n      Other  Simple_repeat
5532    chr1.39981874.39982408              L3       LINE           LINE
5533    chr1.40015063.40015494          MLT1J1        LTR            LTR
5534    chr1.40032387.40032712            <NA>       <NA>           <NA>
5535    chr1.40036718.40036868            <NA>       <NA>           <NA>
5536    chr1.40039452.40041179            MIRb       SINE           SINE
5537    chr1.40049866.40050143              L2       LINE           LINE
5538    chr1.40049866.40050143      CR1-3_Croc       LINE           LINE
5539    chr1.40049866.40050143              L3       LINE           LINE
5540    chr1.40054224.40054708           AluSx       SINE           SINE
5541    chr1.40054224.40054708          AluSz6       SINE           SINE
5542    chr1.40054932.40055141          AluSz6       SINE           SINE
5543    chr1.40054932.40055141             L2c       LINE           LINE
5544    chr1.40057286.40057751        (TTTCT)n      Other  Simple_repeat
5545    chr1.40058689.40059046           AluSz       SINE           SINE
5546    chr1.40058689.40059046            MIRc       SINE           SINE
5547    chr1.40059342.40060115            MIR3       SINE           SINE
5548    chr1.40064641.40065314           AluJb       SINE           SINE
5549    chr1.40066909.40067486              L2       LINE           LINE
5550    chr1.40076749.40077189             L2c       LINE           LINE
5551    chr1.40078431.40078953          AluSx1       SINE           SINE
5552    chr1.40078431.40078953          L1PA17       LINE           LINE
5553    chr1.40084778.40085254           LTR13        LTR            LTR
5554    chr1.40096786.40097863             MIR       SINE           SINE
5555    chr1.40143751.40144385            MIRb       SINE           SINE
5556    chr1.40161098.40162162             L2b       LINE           LINE
5557    chr1.40161098.40162162          G-rich      Other Low_complexity
5558    chr1.40186478.40186883             L2c       LINE           LINE
5559    chr1.40187374.40188246            <NA>       <NA>           <NA>
5560    chr1.40241673.40242453          AluSg7       SINE           SINE
5561    chr1.40248486.40248791            <NA>       <NA>           <NA>
5562    chr1.40257384.40258620       Charlie2b        DNA            DNA
5563    chr1.40264240.40264808           AluSx       SINE           SINE
5564    chr1.40264240.40264808            MIRb       SINE           SINE
5565    chr1.40264240.40264808            MIRc       SINE           SINE
5566    chr1.40264240.40264808           AluJb       SINE           SINE
5567    chr1.40267758.40268211          MLT1J2        LTR            LTR
5568    chr1.40305414.40305843            MIR3       SINE           SINE
5569    chr1.40309654.40309904           (CA)n      Other  Simple_repeat
5570    chr1.40313605.40313945            <NA>       <NA>           <NA>
5571    chr1.40315119.40317206         GA-rich      Other Low_complexity
5572    chr1.40315119.40317206            MIRb       SINE           SINE
5573    chr1.40338439.40339200           AluSx       SINE           SINE
5574    chr1.40338439.40339200            MIRb       SINE           SINE
5575    chr1.40362740.40362970            HAL1       LINE           LINE
5576    chr1.40373426.40374945             MIR       SINE           SINE
5577    chr1.40373426.40374945         (CTTC)n      Other  Simple_repeat
5578    chr1.40373426.40374945          G-rich      Other Low_complexity
5579    chr1.40373426.40374945           (GT)n      Other  Simple_repeat
5580    chr1.40373426.40374945         GA-rich      Other Low_complexity
5581    chr1.40392198.40392658            <NA>       <NA>           <NA>
5582    chr1.40410574.40410952         CR1_Mam       LINE           LINE
5583    chr1.40435463.40436154          AluSq2       SINE           SINE
5584    chr1.40435463.40436154          MLT1G3        LTR            LTR
5585    chr1.40435463.40436154     ERVL-B4-int        LTR            LTR
5586    chr1.40438364.40438794          LTR16C        LTR            LTR
5587    chr1.40449812.40451290            MIRc       SINE           SINE
5588    chr1.40477003.40478060             L2a       LINE           LINE
5589    chr1.40477003.40478060         (TGAA)n      Other  Simple_repeat
5590    chr1.40508397.40509571            <NA>       <NA>           <NA>
5591    chr1.40531245.40532162        L2-3_Crp       LINE           LINE
5592    chr1.40583584.40583715            <NA>       <NA>           <NA>
5593    chr1.40585220.40585971           AluSx       SINE           SINE
5594    chr1.40585220.40585971           MER5A        DNA            DNA
5595    chr1.40585220.40585971          AluSx1       SINE           SINE
5596    chr1.40592289.40592601          MER66C        LTR            LTR
5597    chr1.40593520.40593704            <NA>       <NA>           <NA>
5598    chr1.40612203.40612885            MER2        DNA            DNA
5599    chr1.40612203.40612885           L1ME2       LINE           LINE
5600    chr1.40612203.40612885          LTR41B        LTR            LTR
5601    chr1.40612203.40612885          LTR41B        LTR            LTR
5602    chr1.40625119.40625509            <NA>       <NA>           <NA>
5603    chr1.40626098.40626554           (AC)n      Other  Simple_repeat
5604    chr1.40630641.40630975            <NA>       <NA>           <NA>
5605    chr1.40633822.40634469            MIRb       SINE           SINE
5606    chr1.40633822.40634469             MIR       SINE           SINE
5607    chr1.40638516.40638691            <NA>       <NA>           <NA>
5608    chr1.40651483.40651787           MLT1C        LTR            LTR
5609    chr1.40651483.40651787             L2b       LINE           LINE
5610    chr1.40658976.40659835             L2c       LINE           LINE
5611    chr1.40658976.40659835             L2c       LINE           LINE
5612    chr1.40662930.40663124            MIRb       SINE           SINE
5613    chr1.40665282.40666238        (GCTCC)n      Other  Simple_repeat
5614    chr1.40665282.40666238        MIR1_Amn       SINE           SINE
5615    chr1.40668817.40669121            <NA>       <NA>           <NA>
5616    chr1.40691274.40692772            <NA>       <NA>           <NA>
5617    chr1.40703407.40703705           AluJb       SINE           SINE
5618    chr1.40703407.40703705         MER102c        DNA            DNA
5619    chr1.40708849.40710068            <NA>       <NA>           <NA>
5620    chr1.40710976.40712093            MIRc       SINE           SINE
5621    chr1.40727754.40728162           AluSg       SINE           SINE
5622    chr1.40727754.40728162         Tigger1        DNA            DNA
5623    chr1.40727754.40728162           AluSx       SINE           SINE
5624    chr1.40732623.40732957            <NA>       <NA>           <NA>
5625    chr1.40732982.40733382             L2c       LINE           LINE
5626    chr1.40732982.40733382           AluJb       SINE           SINE
5627    chr1.40736089.40736550            <NA>       <NA>           <NA>
5628    chr1.40742620.40743183             MIR       SINE           SINE
5629    chr1.40742620.40743183         OldhAT1        DNA            DNA
5630    chr1.40755126.40755374            <NA>       <NA>           <NA>
5631    chr1.40758385.40759054            MIR3       SINE           SINE
5632    chr1.40758385.40759054             L2b       LINE           LINE
5633    chr1.40761044.40761379            <NA>       <NA>           <NA>
5634    chr1.40768386.40768894            <NA>       <NA>           <NA>
5635    chr1.40774034.40775051            MIRc       SINE           SINE
5636    chr1.40774034.40775051             L2c       LINE           LINE
5637    chr1.40774034.40775051             L2a       LINE           LINE
5638    chr1.40782518.40783880         (CCCT)n      Other  Simple_repeat
5639    chr1.40782518.40783880         (CGCT)n      Other  Simple_repeat
5640    chr1.40782518.40783880        (GGCGG)n      Other  Simple_repeat
5641    chr1.40790400.40790783            MIRb       SINE           SINE
5642    chr1.40790400.40790783             L2b       LINE           LINE
5643    chr1.40802218.40802659            <NA>       <NA>           <NA>
5644    chr1.40806802.40807620          MER91A        DNA            DNA
5645    chr1.40806802.40807620            MIR3       SINE           SINE
5646    chr1.40818464.40818919            <NA>       <NA>           <NA>
5647    chr1.40824542.40825312            MIRb       SINE           SINE
5648    chr1.40830272.40830746          MER91C        DNA            DNA
5649    chr1.40838272.40838852            <NA>       <NA>           <NA>
5650    chr1.40839029.40839589            <NA>       <NA>           <NA>
5651    chr1.40848476.40848926           AluJr       SINE           SINE
5652    chr1.40849809.40850418            MIRc       SINE           SINE
5653    chr1.40849809.40850418       Tigger15a        DNA            DNA
5654    chr1.40849809.40850418             L2c       LINE           LINE
5655    chr1.40860960.40862829            <NA>       <NA>           <NA>
5656    chr1.40863510.40864311          AluYk4       SINE           SINE
5657    chr1.40863510.40864311            MIRc       SINE           SINE
5658    chr1.40863510.40864311           AluJr       SINE           SINE
5659    chr1.40863510.40864311            MIR3       SINE           SINE
5660    chr1.40863510.40864311            MIRc       SINE           SINE
5661    chr1.40868366.40868621        Tigger3b        DNA            DNA
5662    chr1.40868366.40868621             L2a       LINE           LINE
5663    chr1.40875690.40876205           AluJr       SINE           SINE
5664    chr1.40875690.40876205          (TGC)n      Other  Simple_repeat
5665    chr1.40875690.40876205         (GTTT)n      Other  Simple_repeat
5666    chr1.40875690.40876205             MIR       SINE           SINE
5667    chr1.40877621.40878173             MIR       SINE           SINE
5668    chr1.40877621.40878173           AluJr       SINE           SINE
5669    chr1.40889618.40890247           AluSx       SINE           SINE
5670    chr1.40889618.40890247           MER5A        DNA            DNA
5671    chr1.40889618.40890247           (AT)n      Other  Simple_repeat
5672    chr1.40889618.40890247           AluJo       SINE           SINE
5673    chr1.40897446.40897880           AluJo       SINE           SINE
5674    chr1.40897446.40897880            MIR3       SINE           SINE
5675    chr1.40897446.40897880         MER113A        DNA            DNA
5676    chr1.40898338.40899019            MIR3       SINE           SINE
5677    chr1.40898338.40899019             L2c       LINE           LINE
5678    chr1.40898338.40899019            MIRb       SINE           SINE
5679    chr1.40923063.40923408            MIRb       SINE           SINE
5680    chr1.40932201.40932447            <NA>       <NA>           <NA>
5681    chr1.40948624.40949327             L2b       LINE           LINE
5682    chr1.40952309.40952946           MER5A        DNA            DNA
5683    chr1.40952309.40952946             L2b       LINE           LINE
5684    chr1.40967465.40968387          AluJr4       SINE           SINE
5685    chr1.40967465.40968387             L2a       LINE           LINE
5686    chr1.40967465.40968387          AluSx4       SINE           SINE
5687    chr1.40977007.40977335        L2-3_Crp       LINE           LINE
5688    chr1.40977007.40977335             L2b       LINE           LINE
5689    chr1.40977833.40977999           AluJo       SINE           SINE
5690    chr1.40979226.40980601        (CCCGC)n      Other  Simple_repeat
5691    chr1.40979226.40980601          G-rich      Other Low_complexity
5692    chr1.40979226.40980601            MIRc       SINE           SINE
5693    chr1.40980791.40981081            <NA>       <NA>           <NA>
5694    chr1.40986883.40987230             MIR       SINE           SINE
5695    chr1.40986883.40987230         OldhAT1        DNA            DNA
5696    chr1.41003628.41004444             MIR       SINE           SINE
5697    chr1.41003628.41004444          MLT1H2        LTR            LTR
5698    chr1.41006765.41007573             L2a       LINE           LINE
5699    chr1.41017200.41018055            <NA>       <NA>           <NA>
5700    chr1.41023382.41023743            <NA>       <NA>           <NA>
5701    chr1.41032900.41033698          AluSx3       SINE           SINE
5702    chr1.41032900.41033698             L2a       LINE           LINE
5703    chr1.41032900.41033698           AluJb       SINE           SINE
5704    chr1.41032900.41033698             L2a       LINE           LINE
5705    chr1.41032900.41033698             MIR       SINE           SINE
5706    chr1.41033964.41034245            MIRc       SINE           SINE
5707    chr1.41044140.41044568         (AGGC)n      Other  Simple_repeat
5708    chr1.41045473.41046123            <NA>       <NA>           <NA>
5709    chr1.41046334.41046733         (CCTC)n      Other  Simple_repeat
5710    chr1.41074009.41074314            (T)n      Other  Simple_repeat
5711    chr1.41074009.41074314            MIRb       SINE           SINE
5712    chr1.41102182.41102727           (TG)n      Other  Simple_repeat
5713    chr1.41109060.41110221            MIRb       SINE           SINE
5714    chr1.41109060.41110221             L2a       LINE           LINE
5715    chr1.41123023.41123844           AluJo       SINE           SINE
5716    chr1.41123023.41123844           MER5B        DNA            DNA
5717    chr1.41150811.41151393            AluY       SINE           SINE
5718    chr1.41151864.41153047            <NA>       <NA>           <NA>
5719    chr1.41155934.41156251          AluSx1       SINE           SINE
5720    chr1.41155934.41156251              L3       LINE           LINE
5721    chr1.41155934.41156251              L3       LINE           LINE
5722    chr1.41158182.41158785             L2c       LINE           LINE
5723    chr1.41158182.41158785             L2c       LINE           LINE
5724    chr1.41162409.41163097          MER52D        LTR            LTR
5725    chr1.41217453.41217883       MLT1C-int        LTR            LTR
5726    chr1.41222483.41222823            <NA>       <NA>           <NA>
5727    chr1.41226904.41227286             L2c       LINE           LINE
5728    chr1.41226904.41227286             L2b       LINE           LINE
5729    chr1.41234051.41234617          AluJr4       SINE           SINE
5730    chr1.41234051.41234617            AluY       SINE           SINE
5731    chr1.41238372.41238804             L2c       LINE           LINE
5732    chr1.41241213.41242898              L3       LINE           LINE
5733    chr1.41241213.41242898         (GCGG)n      Other  Simple_repeat
5734    chr1.41241213.41242898            FRAM       SINE           SINE
5735    chr1.41243713.41244181          MLT1E3        LTR            LTR
5736    chr1.41245645.41246006             L2b       LINE           LINE
5737    chr1.41265285.41265632            MIR3       SINE           SINE
5738    chr1.41268143.41268700            MIRb       SINE           SINE
5739    chr1.41272713.41273076         MamTip2        DNA            DNA
5740    chr1.41272713.41273076              L3       LINE           LINE
5741    chr1.41282606.41283678            MIRc       SINE           SINE
5742    chr1.41282606.41283678            MIR3       SINE           SINE
5743    chr1.41282606.41283678            MIRb       SINE           SINE
5744    chr1.41282606.41283678            MIR3       SINE           SINE
5745    chr1.41305843.41306321             L2a       LINE           LINE
5746    chr1.41305843.41306321         LTR33A_        LTR            LTR
5747    chr1.41315200.41316104           (AC)n      Other  Simple_repeat
5748    chr1.41319907.41320416            MIR3       SINE           SINE
5749    chr1.41320439.41320829            <NA>       <NA>           <NA>
5750    chr1.41322814.41323158           AluSp       SINE           SINE
5751    chr1.41325884.41326176           MLT1G        LTR            LTR
5752    chr1.41325884.41326176           MLT1G        LTR            LTR
5753    chr1.41328632.41329549            <NA>       <NA>           <NA>
5754    chr1.41330004.41330792            MIRb       SINE           SINE
5755    chr1.41333256.41333618             L2c       LINE           LINE
5756    chr1.41333256.41333618           MLT1K        LTR            LTR
5757    chr1.41342008.41342503            MIRb       SINE           SINE
5758    chr1.41357578.41358490            <NA>       <NA>           <NA>
5759    chr1.41360339.41360480             L2a       LINE           LINE
5760    chr1.41360914.41362311            MIRc       SINE           SINE
5761    chr1.41360914.41362311       (CCCCGC)n      Other  Simple_repeat
5762    chr1.41360914.41362311       (AGCCGG)n      Other  Simple_repeat
5763    chr1.41360914.41362311      (CGCGCCC)n      Other  Simple_repeat
5764    chr1.41360914.41362311       (CCCGGC)n      Other  Simple_repeat
5765    chr1.41365689.41366323            <NA>       <NA>           <NA>
5766    chr1.41366536.41366934         (AGAC)n      Other  Simple_repeat
5767    chr1.41369496.41369848           MER5B        DNA            DNA
5768    chr1.41371778.41372563            MIR3       SINE           SINE
5769    chr1.41371778.41372563          (CCT)n      Other  Simple_repeat
5770    chr1.41381913.41382946          G-rich      Other Low_complexity
5771    chr1.41387708.41388187            <NA>       <NA>           <NA>
5772    chr1.41394789.41396464          LTR28C        LTR            LTR
5773    chr1.41394789.41396464           (GT)n      Other  Simple_repeat
5774    chr1.41394789.41396464             L2b       LINE           LINE
5775    chr1.41394789.41396464             MIR       SINE           SINE
5776    chr1.41404306.41404958            MIRb       SINE           SINE
5777    chr1.41412769.41413117             L2b       LINE           LINE
5778    chr1.41417027.41417417            MIRb       SINE           SINE
5779    chr1.41418933.41419218            MIR3       SINE           SINE
5780    chr1.41423555.41425182           (TG)n      Other  Simple_repeat
5781    chr1.41427547.41427781            <NA>       <NA>           <NA>
5782    chr1.41432460.41433392           MLT1B        LTR            LTR
5783    chr1.41432460.41433392           MLT1B        LTR            LTR
5784    chr1.41432460.41433392            MIRb       SINE           SINE
5785    chr1.41435601.41436046            <NA>       <NA>           <NA>
5786    chr1.41448335.41448759             L2b       LINE           LINE
5787    chr1.41455795.41456265             L2c       LINE           LINE
5788    chr1.41474505.41475283             MIR       SINE           SINE
5789    chr1.41476008.41476278             L2c       LINE           LINE
5790    chr1.41476008.41476278           (GA)n      Other  Simple_repeat
5791    chr1.41482965.41483365           (GT)n      Other  Simple_repeat
5792    chr1.41485593.41487665            MIRb       SINE           SINE
5793    chr1.41485593.41487665            MIR3       SINE           SINE
5794    chr1.41493087.41493434            <NA>       <NA>           <NA>
5795    chr1.41495354.41496799             MIR       SINE           SINE
5796    chr1.41498543.41498719             MIR       SINE           SINE
5797    chr1.41500577.41501302             MIR       SINE           SINE
5798    chr1.41503984.41504644           MLT1I        LTR            LTR
5799    chr1.41515932.41516656             L2a       LINE           LINE
5800    chr1.41515932.41516656             L2a       LINE           LINE
5801    chr1.41521585.41522171         (AGAC)n      Other  Simple_repeat
5802    chr1.41525551.41526538       (CACCCT)n      Other  Simple_repeat
5803    chr1.41536203.41536600              L3       LINE           LINE
5804    chr1.41536203.41536600         MER102c        DNA            DNA
5805    chr1.41537506.41538403             L2c       LINE           LINE
5806    chr1.41542618.41542894       (GCAGAG)n      Other  Simple_repeat
5807    chr1.41558679.41559171            <NA>       <NA>           <NA>
5808    chr1.41573868.41574716            <NA>       <NA>           <NA>
5809    chr1.41607783.41608696           MLT1J        LTR            LTR
5810    chr1.41607783.41608696           MLT1J        LTR            LTR
5811    chr1.41607783.41608696          HAL1ME       LINE           LINE
5812    chr1.41607783.41608696          HAL1ME       LINE           LINE
5813    chr1.41619858.41620040            <NA>       <NA>           <NA>
5814    chr1.41622338.41622813          MER58A        DNA            DNA
5815    chr1.41622338.41622813             L2c       LINE           LINE
5816    chr1.41626078.41626541            <NA>       <NA>           <NA>
5817    chr1.41631988.41632393             L2c       LINE           LINE
5818    chr1.41631988.41632393             L2c       LINE           LINE
5819    chr1.41639441.41640166            MIRb       SINE           SINE
5820    chr1.41649961.41650489         Plat_L3       LINE           LINE
5821    chr1.41649961.41650489            MIRb       SINE           SINE
5822    chr1.41661530.41663327         (GCGG)n      Other  Simple_repeat
5823    chr1.41665007.41665590            <NA>       <NA>           <NA>
5824    chr1.41667009.41667455             L2c       LINE           LINE
5825    chr1.41670404.41670974             L2a       LINE           LINE
5826    chr1.41670404.41670974             L2a       LINE           LINE
5827    chr1.41672216.41672773            MIRb       SINE           SINE
5828    chr1.41678356.41678883            <NA>       <NA>           <NA>
5829    chr1.41681368.41681830           AluJo       SINE           SINE
5830    chr1.41695068.41695517             L2b       LINE           LINE
5831    chr1.41713674.41714239      CR1-3_Croc       LINE           LINE
5832    chr1.41728283.41729040             MIR       SINE           SINE
5833    chr1.41735431.41736208            <NA>       <NA>           <NA>
5834    chr1.41742366.41742592            <NA>       <NA>           <NA>
5835    chr1.41751169.41751733            MIRc       SINE           SINE
5836    chr1.41751169.41751733            (T)n      Other  Simple_repeat
5837    chr1.41761021.41761760       (GTGCAT)n      Other  Simple_repeat
5838    chr1.41761021.41761760         (GTGT)n      Other  Simple_repeat
5839    chr1.41762353.41762487          LTR28C        LTR            LTR
5840    chr1.41766604.41766989            MIRb       SINE           SINE
5841    chr1.41767435.41767833              L3       LINE           LINE
5842    chr1.41773126.41773688            MIRb       SINE           SINE
5843    chr1.41773126.41773688            MIRc       SINE           SINE
5844    chr1.41783096.41783622           (CA)n      Other  Simple_repeat
5845    chr1.41810417.41810695            <NA>       <NA>           <NA>
5846    chr1.41812081.41812793            FRAM       SINE           SINE
5847    chr1.41812081.41812793              L3       LINE           LINE
5848    chr1.41823269.41823999           MLT1B        LTR            LTR
5849    chr1.41823269.41823999            MIRb       SINE           SINE
5850    chr1.41844235.41844527            <NA>       <NA>           <NA>
5851    chr1.41847726.41848129            <NA>       <NA>           <NA>
5852    chr1.41851703.41851890            MIRc       SINE           SINE
5853    chr1.41862305.41863360            <NA>       <NA>           <NA>
5854    chr1.41870026.41870541             L2a       LINE           LINE
5855    chr1.41874925.41875808             L2b       LINE           LINE
5856    chr1.41876671.41877350            MIRb       SINE           SINE
5857    chr1.41884194.41884513           AluSz       SINE           SINE
5858    chr1.41884918.41885146            <NA>       <NA>           <NA>
5859    chr1.41888774.41889258           (AC)n      Other  Simple_repeat
5860    chr1.41890663.41891159            MIRb       SINE           SINE
5861    chr1.41900524.41901291         Zaphod3        DNA            DNA
5862    chr1.41900524.41901291             L2b       LINE           LINE
5863    chr1.41900524.41901291             L2b       LINE           LINE
5864    chr1.41901701.41902538             L2b       LINE           LINE
5865    chr1.41901701.41902538             L2a       LINE           LINE
5866    chr1.41901701.41902538         LTR16A2        LTR            LTR
5867    chr1.41917715.41918419        (TTGGG)n      Other  Simple_repeat
5868    chr1.41917715.41918419          (CCG)n      Other  Simple_repeat
5869    chr1.41919878.41920370            <NA>       <NA>           <NA>
5870    chr1.41920742.41920953             L3b       LINE           LINE
5871    chr1.41954523.41954954            MIRb       SINE           SINE
5872    chr1.41955481.41955874            <NA>       <NA>           <NA>
5873    chr1.41957524.41957914            <NA>       <NA>           <NA>
5874    chr1.42021516.42021819             L2a       LINE           LINE
5875    chr1.42021516.42021819      (TTCTTCA)n      Other  Simple_repeat
5876    chr1.42035022.42036535      (GCCCCAG)n      Other  Simple_repeat
5877    chr1.42042988.42043577            <NA>       <NA>           <NA>
5878    chr1.42047277.42047809            MIR3       SINE           SINE
5879    chr1.42047277.42047809             MIR       SINE           SINE
5880    chr1.42143349.42143598           MLT1I        LTR            LTR
5881    chr1.42145989.42146578           (CA)n      Other  Simple_repeat
5882    chr1.42146624.42147259           (GT)n      Other  Simple_repeat
5883    chr1.42165501.42166798            MIRb       SINE           SINE
5884    chr1.42165501.42166798        (CTGTC)n      Other  Simple_repeat
5885    chr1.42165501.42166798           (GT)n      Other  Simple_repeat
5886    chr1.42167460.42167725          G-rich      Other Low_complexity
5887    chr1.42172273.42172699       (CACACG)n      Other  Simple_repeat
5888    chr1.42172273.42172699           (CA)n      Other  Simple_repeat
5889    chr1.42172870.42173631            MIRb       SINE           SINE
5890    chr1.42172870.42173631             MIR       SINE           SINE
5891    chr1.42177641.42177901           (AC)n      Other  Simple_repeat
5892    chr1.42178300.42178675           AluSx       SINE           SINE
5893    chr1.42179429.42179693            <NA>       <NA>           <NA>
5894    chr1.42186107.42186513            <NA>       <NA>           <NA>
5895    chr1.42203312.42203578           L1MEg       LINE           LINE
5896    chr1.42211365.42211789           L1PBb       LINE           LINE
5897    chr1.42222265.42222876             L2b       LINE           LINE
5898    chr1.42222265.42222876           MER94        DNA            DNA
5899    chr1.42222265.42222876             L2b       LINE           LINE
5900    chr1.42222265.42222876             L2a       LINE           LINE
5901    chr1.42226169.42227004           AluSx       SINE           SINE
5902    chr1.42226169.42227004             L2c       LINE           LINE
5903    chr1.42241075.42241451          L1MA4A       LINE           LINE
5904    chr1.42259491.42260058         Plat_L3       LINE           LINE
5905    chr1.42282220.42283163             L2c       LINE           LINE
5906    chr1.42314305.42314673          AluSq2       SINE           SINE
5907    chr1.42316216.42316620           AluJr       SINE           SINE
5908    chr1.42316216.42316620             MIR       SINE           SINE
5909    chr1.42320814.42321021            <NA>       <NA>           <NA>
5910    chr1.42324556.42325150        Tigger3c        DNA            DNA
5911    chr1.42334199.42336078      (AGGCCCC)n      Other  Simple_repeat
5912    chr1.42334199.42336078          (CCG)n      Other  Simple_repeat
5913    chr1.42344217.42344540             L2a       LINE           LINE
5914    chr1.42344217.42344540             MIR       SINE           SINE
5915    chr1.42344217.42344540          AluSq2       SINE           SINE
5916    chr1.42379922.42381271         (CCCG)n      Other  Simple_repeat
5917    chr1.42419291.42419801            <NA>       <NA>           <NA>
5918    chr1.42420772.42421340            MIRc       SINE           SINE
5919    chr1.42429765.42430036            MIRb       SINE           SINE
5920    chr1.42433324.42433774            <NA>       <NA>           <NA>
5921    chr1.42439944.42440376           L1MB7       LINE           LINE
5922    chr1.42439944.42440376       (CATCTC)n      Other  Simple_repeat
5923    chr1.42439944.42440376           L1MB7       LINE           LINE
5924    chr1.42455916.42457116        (GGCGC)n      Other  Simple_repeat
5925    chr1.42462926.42463764            MIR3       SINE           SINE
5926    chr1.42479671.42479871          LTR53B        LTR            LTR
5927    chr1.42484360.42484700            <NA>       <NA>           <NA>
5928    chr1.42529728.42530206          MER44D        DNA            DNA
5929    chr1.42533111.42533735          LTR10D        LTR            LTR
5930    chr1.42533111.42533735            MIRb       SINE           SINE
5931    chr1.42657967.42659305             L2a       LINE           LINE
5932    chr1.42669971.42670584            <NA>       <NA>           <NA>
5933    chr1.42681571.42683439            MIRb       SINE           SINE
5934    chr1.42681571.42683439          (GCC)n      Other  Simple_repeat
5935    chr1.42706174.42706722        Tigger3b        DNA            DNA
5936    chr1.42706174.42706722          L1MA4A       LINE           LINE
5937    chr1.42736222.42736520            <NA>       <NA>           <NA>
5938    chr1.42740247.42740436            <NA>       <NA>           <NA>
5939    chr1.42747084.42747546            <NA>       <NA>           <NA>
5940    chr1.42749149.42749514            <NA>       <NA>           <NA>
5941    chr1.42756772.42757565             L2a       LINE           LINE
5942    chr1.42756772.42757565            MIRb       SINE           SINE
5943    chr1.42756772.42757565           L1M6B       LINE           LINE
5944    chr1.42766013.42767766            MIRc       SINE           SINE
5945    chr1.42777622.42778150          MLT1F2        LTR            LTR
5946    chr1.42777622.42778150              L2       LINE           LINE
5947    chr1.42816270.42817664            MIR3       SINE           SINE
5948    chr1.42816270.42817664            MIRc       SINE           SINE
5949    chr1.42816270.42817664          G-rich      Other Low_complexity
5950    chr1.42816270.42817664        (GGCCG)n      Other  Simple_repeat
5951    chr1.42816270.42817664            MIRc       SINE           SINE
5952    chr1.42830981.42831440            <NA>       <NA>           <NA>
5953    chr1.42846184.42847287            <NA>       <NA>           <NA>
5954    chr1.42877410.42877799          L1PA13       LINE           LINE
5955    chr1.42877410.42877799           L1MEd       LINE           LINE
5956    chr1.42887838.42888544            <NA>       <NA>           <NA>
5957    chr1.42913317.42913638           (TA)n      Other  Simple_repeat
5958    chr1.42913317.42913638   (ATATATACAC)n      Other  Simple_repeat
5959    chr1.42913317.42913638           (TA)n      Other  Simple_repeat
5960    chr1.42914326.42914771           L1M3c       LINE           LINE
5961    chr1.42914326.42914771           L1MCa       LINE           LINE
5962    chr1.42923052.42923345              L2       LINE           LINE
5963    chr1.42923994.42925055        (CCCAC)n      Other  Simple_repeat
5964    chr1.42923994.42925055       (CCCGCA)n      Other  Simple_repeat
5965    chr1.42928017.42928199            MIRb       SINE           SINE
5966    chr1.42931092.42931311            MIR3       SINE           SINE
5967    chr1.42931954.42932456            <NA>       <NA>           <NA>
5968    chr1.42936357.42936829            <NA>       <NA>           <NA>
5969    chr1.42940730.42941431           AluJo       SINE           SINE
5970    chr1.42940730.42941431       (TTTTAT)n      Other  Simple_repeat
5971    chr1.42940730.42941431              L2       LINE           LINE
5972    chr1.42941471.42942130            MIRc       SINE           SINE
5973    chr1.42941471.42942130           MER5B        DNA            DNA
5974    chr1.42943273.42943466            <NA>       <NA>           <NA>
5975    chr1.42952369.42952711            <NA>       <NA>           <NA>
5976    chr1.42957787.42959473       (GCCGGG)n      Other  Simple_repeat
5977    chr1.42957787.42959473            MIR3       SINE           SINE
5978    chr1.42957787.42959473             MIR       SINE           SINE
5979    chr1.42962688.42962933          (GGT)n      Other  Simple_repeat
5980    chr1.42966964.42967538            MIRc       SINE           SINE
5981    chr1.42966964.42967538            MIR3       SINE           SINE
5982    chr1.42971888.42972024          MLT1H2        LTR            LTR
5983    chr1.42973210.42973774            L1MC       LINE           LINE
5984    chr1.42992045.42992578          LTR48B        LTR            LTR
5985    chr1.42992045.42992578           L1MCa       LINE           LINE
5986    chr1.43005662.43006205            <NA>       <NA>           <NA>
5987    chr1.43008314.43009000             MIR       SINE           SINE
5988    chr1.43031545.43031959          L1ME4a       LINE           LINE
5989    chr1.43044831.43045337 ERV3-16A3_I-int        LTR            LTR
5990    chr1.43048740.43048950            <NA>       <NA>           <NA>
5991    chr1.43049236.43049961       (CCTGGC)n      Other  Simple_repeat
5992    chr1.43049236.43049961              L3       LINE           LINE
5993    chr1.43049236.43049961      LTR107_Mam        LTR            LTR
5994    chr1.43055040.43055272            <NA>       <NA>           <NA>
5995    chr1.43055862.43056209             L2b       LINE           LINE
5996    chr1.43055862.43056209             L2b       LINE           LINE
5997    chr1.43058570.43058989       (GGCTGG)n      Other  Simple_repeat
5998    chr1.43069559.43070014        (GGCCA)n      Other  Simple_repeat
5999    chr1.43073548.43074080            MIRb       SINE           SINE
6000    chr1.43073548.43074080          L1ME3B       LINE           LINE
6001    chr1.43120005.43120519           L1PA2       LINE           LINE
6002    chr1.43120005.43120519           L1MB3       LINE           LINE
6003    chr1.43137641.43138231           MLT1I        LTR            LTR
6004    chr1.43137641.43138231            MIRb       SINE           SINE
6005    chr1.43147548.43148140            <NA>       <NA>           <NA>
6006    chr1.43152862.43153258             MIR       SINE           SINE
6007    chr1.43152862.43153258            MIRc       SINE           SINE
6008    chr1.43171538.43172943            <NA>       <NA>           <NA>
6009    chr1.43206572.43207509        Tigger3a        DNA            DNA
6010    chr1.43226864.43227648              L2       LINE           LINE
6011    chr1.43232176.43232802            <NA>       <NA>           <NA>
6012    chr1.43232883.43233306            MIR3       SINE           SINE
6013    chr1.43232883.43233306           AluSg       SINE           SINE
6014    chr1.43238063.43238494            <NA>       <NA>           <NA>
6015    chr1.43241502.43242034          MER5A1        DNA            DNA
6016    chr1.43241502.43242034             L2b       LINE           LINE
6017    chr1.43270414.43270681       (GAGTTG)n      Other  Simple_repeat
6018    chr1.43270897.43271470            MIRb       SINE           SINE
6019    chr1.43270897.43271470             L2c       LINE           LINE
6020    chr1.43274338.43274609           LTR91        LTR            LTR
6021    chr1.43292355.43292617           AluJb       SINE           SINE
6022    chr1.43294278.43294913           AluJr       SINE           SINE
6023    chr1.43302815.43303869            MIRb       SINE           SINE
6024    chr1.43302815.43303869              L2       LINE           LINE
6025    chr1.43302815.43303869             L2c       LINE           LINE
6026    chr1.43330193.43330624            <NA>       <NA>           <NA>
6027    chr1.43334457.43335107              L2       LINE           LINE
6028    chr1.43334457.43335107              L2       LINE           LINE
6029    chr1.43344279.43344548             L2c       LINE           LINE
6030    chr1.43345319.43345476             L2a       LINE           LINE
6031    chr1.43348560.43350037          G-rich      Other Low_complexity
6032    chr1.43348560.43350037             L2c       LINE           LINE
6033    chr1.43358157.43359340        MIR1_Amn       SINE           SINE
6034    chr1.43358157.43359340        (GCCCC)n      Other  Simple_repeat
6035    chr1.43367049.43368630   (CTGGGCAGGG)n      Other  Simple_repeat
6036    chr1.43373016.43373666            <NA>       <NA>           <NA>
6037    chr1.43389308.43390372            <NA>       <NA>           <NA>
6038    chr1.43405259.43406031          AluSq2       SINE           SINE
6039    chr1.43405259.43406031             L2c       LINE           LINE
6040    chr1.43414515.43415287          AluSg7       SINE           SINE
6041    chr1.43426862.43427027            <NA>       <NA>           <NA>
6042    chr1.43435931.43436139            <NA>       <NA>           <NA>
6043    chr1.43444798.43445117            <NA>       <NA>           <NA>
6044    chr1.43445616.43445879            MIR3       SINE           SINE
6045    chr1.43452805.43454718             L2c       LINE           LINE
6046    chr1.43452805.43454718        (CCCGG)n      Other  Simple_repeat
6047    chr1.43452805.43454718      (GGCGGCG)n      Other  Simple_repeat
6048    chr1.43452805.43454718          L1ME4a       LINE           LINE
6049    chr1.43452805.43454718           MLT1M        LTR            LTR
6050    chr1.43472316.43473311     ERVL-B4-int        LTR            LTR
6051    chr1.43472316.43473311           LTR33        LTR            LTR
6052    chr1.43472316.43473311           LTR33        LTR            LTR
6053    chr1.43472316.43473311           L1MEg       LINE           LINE
6054    chr1.43475691.43476458           LTR33        LTR            LTR
6055    chr1.43475691.43476458           LTR33        LTR            LTR
6056    chr1.43475691.43476458           L1MEd       LINE           LINE
6057    chr1.43523175.43523450             L2c       LINE           LINE
6058    chr1.43524863.43525401             L2c       LINE           LINE
6059    chr1.43526054.43526377              L2       LINE           LINE
6060    chr1.43526054.43526377           AluJb       SINE           SINE
6061    chr1.43529264.43529582            <NA>       <NA>           <NA>
6062    chr1.43530460.43531379          G-rich      Other Low_complexity
6063    chr1.43530460.43531379       (CGGCTC)n      Other  Simple_repeat
6064    chr1.43530460.43531379        (CCCCT)n      Other  Simple_repeat
6065    chr1.43530460.43531379         (CGCT)n      Other  Simple_repeat
6066    chr1.43531530.43532154        (CGTCC)n      Other  Simple_repeat
6067    chr1.43541866.43542317            <NA>       <NA>           <NA>
6068    chr1.43549989.43550619        (GCCCC)n      Other  Simple_repeat
6069    chr1.43549989.43550619             L2b       LINE           LINE
6070    chr1.43552764.43553267             L2b       LINE           LINE
6071    chr1.43552764.43553267             MIR       SINE           SINE
6072    chr1.43554560.43554719            <NA>       <NA>           <NA>
6073    chr1.43557800.43559134        (CCCGC)n      Other  Simple_repeat
6074    chr1.43559194.43560514           (GT)n      Other  Simple_repeat
6075    chr1.43559194.43560514       (TGCATG)n      Other  Simple_repeat
6076    chr1.43565412.43566101            <NA>       <NA>           <NA>
6077    chr1.43569117.43569393            <NA>       <NA>           <NA>
6078    chr1.43582071.43582712            MIRb       SINE           SINE
6079    chr1.43587556.43588164       (CATGCC)n      Other  Simple_repeat
6080    chr1.43587556.43588164        (CCCTG)n      Other  Simple_repeat
6081    chr1.43596705.43597647            <NA>       <NA>           <NA>
6082    chr1.43605808.43606099            <NA>       <NA>           <NA>
6083    chr1.43634752.43635029             L2c       LINE           LINE
6084    chr1.43649533.43650744           AluSp       SINE           SINE
6085    chr1.43649533.43650744           MER81        DNA            DNA
6086    chr1.43649533.43650744            MIRb       SINE           SINE
6087    chr1.43668987.43669585            MIRb       SINE           SINE
6088    chr1.43668987.43669585       (TGTATG)n      Other  Simple_repeat
6089    chr1.43668987.43669585             L2b       LINE           LINE
6090    chr1.43671888.43672322           AluSg       SINE           SINE
6091    chr1.43687220.43687634            <NA>       <NA>           <NA>
6092    chr1.43688619.43689074            <NA>       <NA>           <NA>
6093    chr1.43706884.43708159       (CGCCTC)n      Other  Simple_repeat
6094    chr1.43706884.43708159        (CCGCC)n      Other  Simple_repeat
6095    chr1.43706884.43708159          G-rich      Other Low_complexity
6096    chr1.43711624.43711754       Tigger15a        DNA            DNA
6097    chr1.43719821.43720406           AluSz       SINE           SINE
6098    chr1.43719821.43720406           AluJb       SINE           SINE
6099    chr1.43719821.43720406           L1MB8       LINE           LINE
6100    chr1.43719821.43720406            MSTD        LTR            LTR
6101    chr1.43743309.43743717          L1M4a1       LINE           LINE
6102    chr1.43743309.43743717          (GCT)n      Other  Simple_repeat
6103    chr1.43760913.43761235           L1MB7       LINE           LINE
6104    chr1.43760913.43761235      MLT1J2-int        LTR            LTR
6105    chr1.43763525.43764031            MIRb       SINE           SINE
6106    chr1.43763525.43764031            MIRb       SINE           SINE
6107    chr1.43764680.43764906          LTR16A        LTR            LTR
6108    chr1.43766148.43767307         (TAAA)n      Other  Simple_repeat
6109    chr1.43766148.43767307             L2c       LINE           LINE
6110    chr1.43774430.43774818             L2a       LINE           LINE
6111    chr1.43776252.43776797           L1MB8       LINE           LINE
6112    chr1.43776252.43776797           LTR83        LTR            LTR
6113    chr1.43783577.43784149         CR1_Mam       LINE           LINE
6114    chr1.43787137.43787259            <NA>       <NA>           <NA>
6115    chr1.43787587.43787990            <NA>       <NA>           <NA>
6116    chr1.43795437.43796531       Tigger19b        DNA            DNA
6117    chr1.43795437.43796531       Tigger19b        DNA            DNA
6118    chr1.43795437.43796531           L1MD2       LINE           LINE
6119    chr1.43821926.43822613             L2a       LINE           LINE
6120    chr1.43835154.43835436            <NA>       <NA>           <NA>
6121    chr1.43836460.43837305             L2b       LINE           LINE
6122    chr1.43836460.43837305            MIR3       SINE           SINE
6123    chr1.43836460.43837305             L2c       LINE           LINE
6124    chr1.43849656.43849990            <NA>       <NA>           <NA>
6125    chr1.43858234.43858988            <NA>       <NA>           <NA>
6126    chr1.43862114.43862488             L2c       LINE           LINE
6127    chr1.43868558.43869095            <NA>       <NA>           <NA>
6128    chr1.43874823.43875180             L2a       LINE           LINE
6129    chr1.43880733.43880971             L2b       LINE           LINE
6130    chr1.43880733.43880971             MIR       SINE           SINE
6131    chr1.43880733.43880971             L2b       LINE           LINE
6132    chr1.43881333.43881748             L2b       LINE           LINE
6133    chr1.43885176.43885632            <NA>       <NA>           <NA>
6134    chr1.43892834.43893484            <NA>       <NA>           <NA>
6135    chr1.43912526.43913171             L2b       LINE           LINE
6136    chr1.43929513.43930013           AluSg       SINE           SINE
6137    chr1.43933256.43935055            <NA>       <NA>           <NA>
6138    chr1.43936485.43936955            <NA>       <NA>           <NA>
6139    chr1.43946258.43947339        (GCCGG)n      Other  Simple_repeat
6140    chr1.43969631.43970706           AluJb       SINE           SINE
6141    chr1.43974335.43975677             L2a       LINE           LINE
6142    chr1.43974335.43975677         (GGAC)n      Other  Simple_repeat
6143    chr1.43974335.43975677          (CCG)n      Other  Simple_repeat
6144    chr1.43977515.43977842            <NA>       <NA>           <NA>
6145    chr1.43979718.43980182           (GT)n      Other  Simple_repeat
6146    chr1.43991075.43992294            <NA>       <NA>           <NA>
6147    chr1.43994884.43995062            <NA>       <NA>           <NA>
6148    chr1.44005592.44006159            MIRb       SINE           SINE
6149    chr1.44005592.44006159             L2c       LINE           LINE
6150    chr1.44029610.44031973             L2b       LINE           LINE
6151    chr1.44029610.44031973         (GGCA)n      Other  Simple_repeat
6152    chr1.44029610.44031973           (CA)n      Other  Simple_repeat
6153    chr1.44029610.44031973        (GCCGC)n      Other  Simple_repeat
6154    chr1.44035729.44036291            <NA>       <NA>           <NA>
6155    chr1.44036374.44037146             MIR       SINE           SINE
6156    chr1.44036374.44037146            MIRb       SINE           SINE
6157    chr1.44044193.44044596           MER20        DNA            DNA
6158    chr1.44047584.44048534           (TG)n      Other  Simple_repeat
6159    chr1.44049933.44050102          L1ME3A       LINE           LINE
6160    chr1.44061870.44062339          AluSx1       SINE           SINE
6161    chr1.44061870.44062339          MER66B        LTR            LTR
6162    chr1.44061870.44062339       (TATATC)n      Other  Simple_repeat
6163    chr1.44072101.44072568              L2       LINE           LINE
6164    chr1.44072101.44072568           AluJr       SINE           SINE
6165    chr1.44072101.44072568         (AAAT)n      Other  Simple_repeat
6166    chr1.44072101.44072568           AluJr       SINE           SINE
6167    chr1.44077489.44077891          MLT1G3        LTR            LTR
6168    chr1.44085329.44085563             L2a       LINE           LINE
6169    chr1.44085329.44085563           AluJr       SINE           SINE
6170    chr1.44086685.44087070             L2a       LINE           LINE
6171    chr1.44089321.44089994          LTR16A        LTR            LTR
6172    chr1.44089321.44089994          MER58A        DNA            DNA
6173    chr1.44089321.44089994           AluJb       SINE           SINE
6174    chr1.44103438.44104109            <NA>       <NA>           <NA>
6175    chr1.44169756.44170122            L1M2       LINE           LINE
6176    chr1.44213124.44214133            MIRb       SINE           SINE
6177    chr1.44217800.44218381            <NA>       <NA>           <NA>
6178    chr1.44238185.44238626            <NA>       <NA>           <NA>
6179    chr1.44239215.44241176    (AGAGGAGGG)n      Other  Simple_repeat
6180    chr1.44239215.44241176            MIRb       SINE           SINE
6181    chr1.44249498.44250948            <NA>       <NA>           <NA>
6182    chr1.44270629.44271012            MIRb       SINE           SINE
6183    chr1.44275816.44276444           MSTB1        LTR            LTR
6184    chr1.44290426.44291131            <NA>       <NA>           <NA>
6185    chr1.44293956.44294241            <NA>       <NA>           <NA>
6186    chr1.44294616.44294988            <NA>       <NA>           <NA>
6187    chr1.44296865.44297325            <NA>       <NA>           <NA>
6188    chr1.44303124.44303429            <NA>       <NA>           <NA>
6189    chr1.44308032.44308709            <NA>       <NA>           <NA>
6190    chr1.44316281.44316583            <NA>       <NA>           <NA>
6191    chr1.44318194.44318969        MIR1_Amn       SINE           SINE
6192    chr1.44327645.44328542             MIR       SINE           SINE
6193    chr1.44327645.44328542            MIRc       SINE           SINE
6194    chr1.44327645.44328542           MER5A        DNA            DNA
6195    chr1.44327645.44328542          MER5A1        DNA            DNA
6196    chr1.44328747.44329146            <NA>       <NA>           <NA>
6197    chr1.44354779.44355604          (GGC)n      Other  Simple_repeat
6198    chr1.44361428.44361885           AluSp       SINE           SINE
6199    chr1.44368476.44368916             L2b       LINE           LINE
6200    chr1.44369767.44370598         (CATA)n      Other  Simple_repeat
6201    chr1.44369767.44370598            MIRb       SINE           SINE
6202    chr1.44377981.44378588            <NA>       <NA>           <NA>
6203    chr1.44389935.44390894              L2       LINE           LINE
6204    chr1.44389935.44390894              U6      Other          snRNA
6205    chr1.44389935.44390894          AluSx3       SINE           SINE
6206    chr1.44405054.44406623           (TG)n      Other  Simple_repeat
6207    chr1.44405054.44406623          (GCC)n      Other  Simple_repeat
6208    chr1.44405054.44406623       (GGACTG)n      Other  Simple_repeat
6209    chr1.44405054.44406623          G-rich      Other Low_complexity
6210    chr1.44406924.44407245            <NA>       <NA>           <NA>
6211    chr1.44417136.44417987         (CCTC)n      Other  Simple_repeat
6212    chr1.44418179.44418527         GA-rich      Other Low_complexity
6213    chr1.44423566.44424302             L2a       LINE           LINE
6214    chr1.44484164.44484751          MLT1J2        LTR            LTR
6215    chr1.44484164.44484751          MER105        DNA            DNA
6216    chr1.44485258.44486015            <NA>       <NA>           <NA>
6217    chr1.44496589.44497046            <NA>       <NA>           <NA>
6218    chr1.44500588.44501026             L2a       LINE           LINE
6219    chr1.44501378.44502307           (AC)n      Other  Simple_repeat
6220    chr1.44501378.44502307           (TC)n      Other  Simple_repeat
6221    chr1.44501378.44502307           (CA)n      Other  Simple_repeat
6222    chr1.44524033.44525774           (TC)n      Other  Simple_repeat
6223    chr1.44524033.44525774       (AAGAAA)n      Other  Simple_repeat
6224    chr1.44524033.44525774             L2b       LINE           LINE
6225    chr1.44524033.44525774             L2a       LINE           LINE
6226    chr1.44526728.44527072             L2a       LINE           LINE
6227    chr1.44531927.44532875              L3       LINE           LINE
6228    chr1.44531927.44532875            MIRb       SINE           SINE
6229    chr1.44531927.44532875            MIRb       SINE           SINE
6230    chr1.44552866.44553195            AluY       SINE           SINE
6231    chr1.44552866.44553195             L2c       LINE           LINE
6232    chr1.44553834.44554245           LTR33        LTR            LTR
6233    chr1.44557842.44558071         CR1_Mam       LINE           LINE
6234    chr1.44557842.44558071         CR1_Mam       LINE           LINE
6235    chr1.44568221.44568424             L2a       LINE           LINE
6236    chr1.44568221.44568424             L2a       LINE           LINE
6237    chr1.44572036.44572811             L2c       LINE           LINE
6238    chr1.44572036.44572811             L2b       LINE           LINE
6239    chr1.44572036.44572811             L2c       LINE           LINE
6240    chr1.44595050.44595670          MER5A1        DNA            DNA
6241    chr1.44609458.44610553            MIR3       SINE           SINE
6242    chr1.44609458.44610553       (CCCATC)n      Other  Simple_repeat
6243    chr1.44616950.44618145         (CCCT)n      Other  Simple_repeat
6244    chr1.44616950.44618145        MIR1_Amn       SINE           SINE
6245    chr1.44631377.44632955             L2b       LINE           LINE
6246    chr1.44631377.44632955         (CCCT)n      Other  Simple_repeat
6247    chr1.44637392.44638473            <NA>       <NA>           <NA>
6248    chr1.44640271.44640560            <NA>       <NA>           <NA>
6249    chr1.44652647.44653306             L2a       LINE           LINE
6250    chr1.44655346.44655990            <NA>       <NA>           <NA>
6251    chr1.44660131.44660571            <NA>       <NA>           <NA>
6252    chr1.44673794.44674934            MIRb       SINE           SINE
6253    chr1.44707149.44707560         (TGAG)n      Other  Simple_repeat
6254    chr1.44707149.44707560             L2c       LINE           LINE
6255    chr1.44707149.44707560           AluJo       SINE           SINE
6256    chr1.44714723.44715455           AluJb       SINE           SINE
6257    chr1.44714723.44715455            MIR3       SINE           SINE
6258    chr1.44718838.44718998           AluSp       SINE           SINE
6259    chr1.44721418.44722330           AluJb       SINE           SINE
6260    chr1.44721418.44722330              U5      Other          snRNA
6261    chr1.44721418.44722330          FLAM_C       SINE           SINE
6262    chr1.44724487.44725435       (CCAACT)n      Other  Simple_repeat
6263    chr1.44729305.44729535             L2a       LINE           LINE
6264    chr1.44730526.44731682           AluJr       SINE           SINE
6265    chr1.44730526.44731682          AluSx4       SINE           SINE
6266    chr1.44730526.44731682              U5      Other          snRNA
6267    chr1.44730526.44731682           AluSc       SINE           SINE
6268    chr1.44739412.44740408          FLAM_C       SINE           SINE
6269    chr1.44739412.44740408            MIRb       SINE           SINE
6270    chr1.44775010.44776989              L2       LINE           LINE
6271    chr1.44775010.44776989          G-rich      Other Low_complexity
6272    chr1.44775010.44776989          FLAM_C       SINE           SINE
6273    chr1.44784126.44784724         (GCGG)n      Other  Simple_repeat
6274    chr1.44786129.44786838            <NA>       <NA>           <NA>
6275    chr1.44793417.44794087             L2b       LINE           LINE
6276    chr1.44793417.44794087          AluSx1       SINE           SINE
6277    chr1.44796822.44797047          AluSx1       SINE           SINE
6278    chr1.44796822.44797047           AluJb       SINE           SINE
6279    chr1.44796822.44797047           AluJo       SINE           SINE
6280    chr1.44799727.44801269       (CCGCGC)n      Other  Simple_repeat
6281    chr1.44799727.44801269          (GGT)n      Other  Simple_repeat
6282    chr1.44799727.44801269           AluSg       SINE           SINE
6283    chr1.44801978.44803062            <NA>       <NA>           <NA>
6284    chr1.44806019.44806353            <NA>       <NA>           <NA>
6285    chr1.44807289.44808437            <NA>       <NA>           <NA>
6286    chr1.44808482.44808770          (CGC)n      Other  Simple_repeat
6287    chr1.44811481.44812163             L2c       LINE           LINE
6288    chr1.44812659.44814078          AluSc8       SINE           SINE
6289    chr1.44812659.44814078           (GT)n      Other  Simple_repeat
6290    chr1.44812659.44814078          G-rich      Other Low_complexity
6291    chr1.44819619.44821420          AluSx3       SINE           SINE
6292    chr1.44819619.44821420           AluSx       SINE           SINE
6293    chr1.44819619.44821420              U5      Other          snRNA
6294    chr1.44819619.44821420             L2c       LINE           LINE
6295    chr1.44819619.44821420            MIRc       SINE           SINE
6296    chr1.44819619.44821420          (TTG)n      Other  Simple_repeat
6297    chr1.44826625.44827341          G-rich      Other Low_complexity
6298    chr1.44832434.44832719            <NA>       <NA>           <NA>
6299    chr1.44835802.44836343           MLT1L        LTR            LTR
6300    chr1.44835802.44836343           AluJo       SINE           SINE
6301    chr1.44842564.44843697          AluSx1       SINE           SINE
6302    chr1.44842564.44843697           AluSx       SINE           SINE
6303    chr1.44863003.44863460            MIRb       SINE           SINE
6304    chr1.44863003.44863460      (ATTATTT)n      Other  Simple_repeat
6305    chr1.44863003.44863460           AluJr       SINE           SINE
6306    chr1.44875215.44876079           SVA_D Retroposon     Retroposon
6307    chr1.44880839.44881583            AluY       SINE           SINE
6308    chr1.44880839.44881583             MIR       SINE           SINE
6309    chr1.44880839.44881583             L2b       LINE           LINE
6310    chr1.44924657.44925340          AluSc8       SINE           SINE
6311    chr1.44924657.44925340           L1MA2       LINE           LINE
6312    chr1.44924657.44925340           L1MB2       LINE           LINE
6313    chr1.44946849.44947343            <NA>       <NA>           <NA>
6314    chr1.44985833.44986890           AluSx       SINE           SINE
6315    chr1.45010263.45011676             L2b       LINE           LINE
6316    chr1.45011887.45013032             L2b       LINE           LINE
6317    chr1.45014569.45014720            <NA>       <NA>           <NA>
6318    chr1.45018641.45019265            <NA>       <NA>           <NA>
6319    chr1.45035556.45035988            <NA>       <NA>           <NA>
6320    chr1.45037453.45037830             L2c       LINE           LINE
6321    chr1.45191197.45191546          AluYk3       SINE           SINE
6322    chr1.45191197.45191546          LTR16A        LTR            LTR
6323    chr1.45191197.45191546           LTR16        LTR            LTR
6324    chr1.45205331.45206972         (CGCC)n      Other  Simple_repeat
6325    chr1.45266044.45266683          LTR18B        LTR            LTR
6326    chr1.45300347.45300501            <NA>       <NA>           <NA>
6327    chr1.45303258.45304392           AluJb       SINE           SINE
6328    chr1.45303258.45304392       (GGAGCC)n      Other  Simple_repeat
6329    chr1.45326495.45327620           (GT)n      Other  Simple_repeat
6330    chr1.45339538.45340712             L2c       LINE           LINE
6331    chr1.45339538.45340712             L2c       LINE           LINE
6332    chr1.45347242.45347544           AluSz       SINE           SINE
6333    chr1.45347916.45349747             L2a       LINE           LINE
6334    chr1.45347916.45349747             L2c       LINE           LINE
6335    chr1.45359643.45360375          AluSx1       SINE           SINE
6336    chr1.45361072.45361319           AluSx       SINE           SINE
6337    chr1.45381280.45381625           MLT1H        LTR            LTR
6338    chr1.45394040.45394608           AluJb       SINE           SINE
6339    chr1.45394040.45394608          MER5A1        DNA            DNA
6340    chr1.45490335.45491680            <NA>       <NA>           <NA>
6341    chr1.45499633.45500571            <NA>       <NA>           <NA>
6342    chr1.45508387.45509068            <NA>       <NA>           <NA>
6343    chr1.45512410.45513051          AluSx1       SINE           SINE
6344    chr1.45513642.45514089         LTR5_Hs        LTR            LTR
6345    chr1.45515971.45516377          FLAM_A       SINE           SINE
6346    chr1.45521087.45522359            <NA>       <NA>           <NA>
6347    chr1.45543579.45544084          AluJr4       SINE           SINE
6348    chr1.45543579.45544084             L2c       LINE           LINE
6349    chr1.45550442.45551431            MIRb       SINE           SINE
6350    chr1.45550442.45551431            MIR3       SINE           SINE
6351    chr1.45550442.45551431            MIRb       SINE           SINE
6352    chr1.45557154.45557562          AluSq2       SINE           SINE
6353    chr1.45566705.45567103            <NA>       <NA>           <NA>
6354    chr1.45569921.45570564            <NA>       <NA>           <NA>
6355    chr1.45574102.45574573       MER61-int        LTR            LTR
6356    chr1.45583322.45585186            <NA>       <NA>           <NA>
6357    chr1.45590781.45591006          MER5C1        DNA            DNA
6358    chr1.45613030.45613467           AluJb       SINE           SINE
6359    chr1.45617692.45618024            <NA>       <NA>           <NA>
6360    chr1.45622163.45624179            <NA>       <NA>           <NA>
6361    chr1.45647219.45647983          AluSq2       SINE           SINE
6362    chr1.45647219.45647983            L1M8       LINE           LINE
6363    chr1.45647219.45647983           LTR41        LTR            LTR
6364    chr1.45647219.45647983           AluJb       SINE           SINE
6365    chr1.45676928.45677478           AluJb       SINE           SINE
6366    chr1.45676928.45677478           AluSz       SINE           SINE
6367    chr1.45676928.45677478           AluJb       SINE           SINE
6368    chr1.45678854.45679491          L1ME4a       LINE           LINE
6369    chr1.45678854.45679491           MER5B        DNA            DNA
6370    chr1.45678854.45679491          MLT1N2        LTR            LTR
6371    chr1.45686130.45687673            MIR3       SINE           SINE
6372    chr1.45688093.45688412            <NA>       <NA>           <NA>
6373    chr1.45721235.45721554           MER68        LTR            LTR
6374    chr1.45730151.45730343           AluJb       SINE           SINE
6375    chr1.45731634.45732167           HAL1b       LINE           LINE
6376    chr1.45731634.45732167           AluSg       SINE           SINE
6377    chr1.45731634.45732167           HAL1b       LINE           LINE
6378    chr1.45731634.45732167          AluSx1       SINE           SINE
6379    chr1.45735570.45735912           AluJb       SINE           SINE
6380    chr1.45735570.45735912           AluSz       SINE           SINE
6381    chr1.45735570.45735912          AluSc8       SINE           SINE
6382    chr1.45750094.45751095            <NA>       <NA>           <NA>
6383    chr1.45769028.45769736           AluJb       SINE           SINE
6384    chr1.45769028.45769736        Charlie7        DNA            DNA
6385    chr1.45769028.45769736          MLT1F2        LTR            LTR
6386    chr1.45802706.45804446            MIRc       SINE           SINE
6387    chr1.45802706.45804446            MIRb       SINE           SINE
6388    chr1.45802706.45804446             L2c       LINE           LINE
6389    chr1.45802706.45804446          (GCC)n      Other  Simple_repeat
6390    chr1.45840724.45841196         MER57C1        LTR            LTR
6391    chr1.45840724.45841196           AluJb       SINE           SINE
6392    chr1.45840724.45841196          FLAM_C       SINE           SINE
6393    chr1.45843528.45843907            <NA>       <NA>           <NA>
6394    chr1.45872018.45872532          FLAM_C       SINE           SINE
6395    chr1.45872018.45872532           AluSp       SINE           SINE
6396    chr1.45875993.45876452             L2b       LINE           LINE
6397    chr1.45881505.45882134          L1ME3C       LINE           LINE
6398    chr1.45881505.45882134            AluY       SINE           SINE
6399    chr1.45883528.45883873            MIRc       SINE           SINE
6400    chr1.45883528.45883873          A-rich      Other Low_complexity
6401    chr1.45884754.45884999            MIR3       SINE           SINE
6402    chr1.45891996.45893029       MER92-int        LTR            LTR
6403    chr1.45913210.45914369            <NA>       <NA>           <NA>
6404    chr1.45929174.45929682           L1MC5       LINE           LINE
6405    chr1.45945753.45946348             L2a       LINE           LINE
6406    chr1.45953982.45954979            <NA>       <NA>           <NA>
6407    chr1.45969323.45970125           L1MCa       LINE           LINE
6408    chr1.45969323.45970125           MER1A        DNA            DNA
6409    chr1.45969323.45970125           L1MCa       LINE           LINE
6410    chr1.45998135.45998524            <NA>       <NA>           <NA>
6411    chr1.46008470.46008896            <NA>       <NA>           <NA>
6412    chr1.46012341.46012876            MIRc       SINE           SINE
6413    chr1.46012341.46012876             L2c       LINE           LINE
6414    chr1.46012341.46012876             L2c       LINE           LINE
6415    chr1.46012341.46012876           AluJo       SINE           SINE
6416    chr1.46012341.46012876           AluSz       SINE           SINE
6417    chr1.46018830.46020350             L2c       LINE           LINE
6418    chr1.46018830.46020350             L2c       LINE           LINE
6419    chr1.46026368.46027120             L2c       LINE           LINE
6420    chr1.46026368.46027120            MIRb       SINE           SINE
6421    chr1.46026368.46027120             L2c       LINE           LINE
6422    chr1.46031262.46031773             MIR       SINE           SINE
6423    chr1.46034499.46035075         (CTGT)n      Other  Simple_repeat
6424    chr1.46036845.46037641             L2b       LINE           LINE
6425    chr1.46039617.46040018            <NA>       <NA>           <NA>
6426    chr1.46042019.46042386            <NA>       <NA>           <NA>
6427    chr1.46053752.46054332          MLT1A0        LTR            LTR
6428    chr1.46053752.46054332        X6A_LINE       LINE           LINE
6429    chr1.46053752.46054332           AluSx       SINE           SINE
6430    chr1.46069957.46070364             L2a       LINE           LINE
6431    chr1.46072819.46073449           AluJo       SINE           SINE
6432    chr1.46072819.46073449       (ATATAT)n      Other  Simple_repeat
6433    chr1.46072819.46073449             L2a       LINE           LINE
6434    chr1.46072819.46073449     ERVL-B4-int        LTR            LTR
6435    chr1.46084659.46085120            <NA>       <NA>           <NA>
6436    chr1.46086634.46087126          AluSx1       SINE           SINE
6437    chr1.46086634.46087126            HAL1       LINE           LINE
6438    chr1.46086634.46087126           L1PA5       LINE           LINE
6439    chr1.46086634.46087126           L1PA5       LINE           LINE
6440    chr1.46131797.46133605          A-rich      Other Low_complexity
6441    chr1.46134840.46135080        AmnSINE1       SINE           SINE
6442    chr1.46151747.46152405      MamGyp-int        LTR            LTR
6443    chr1.46173089.46174193             L2a       LINE           LINE
6444    chr1.46173089.46174193           (CA)n      Other  Simple_repeat
6445    chr1.46173089.46174193         (GTGT)n      Other  Simple_repeat
6446    chr1.46179359.46179989            MIRb       SINE           SINE
6447    chr1.46179359.46179989         GA-rich      Other Low_complexity
6448    chr1.46179359.46179989         GA-rich      Other Low_complexity
6449    chr1.46179359.46179989           (GT)n      Other  Simple_repeat
6450    chr1.46180151.46180496       (GTGCAT)n      Other  Simple_repeat
6451    chr1.46183115.46183761            <NA>       <NA>           <NA>
6452    chr1.46191015.46191600              L3       LINE           LINE
6453    chr1.46191015.46191600             MIR       SINE           SINE
6454    chr1.46194845.46195235            MIRb       SINE           SINE
6455    chr1.46194845.46195235             L2a       LINE           LINE
6456    chr1.46197815.46198840            MIRc       SINE           SINE
6457    chr1.46197815.46198840          (CGC)n      Other  Simple_repeat
6458    chr1.46197815.46198840          (GGC)n      Other  Simple_repeat
6459    chr1.46203020.46204838             L2c       LINE           LINE
6460    chr1.46205537.46206052            <NA>       <NA>           <NA>
6461    chr1.46210822.46211581           AluJb       SINE           SINE
6462    chr1.46210822.46211581          MER21A        LTR            LTR
6463    chr1.46210822.46211581           (CA)n      Other  Simple_repeat
6464    chr1.46210822.46211581          MER21A        LTR            LTR
6465    chr1.46210822.46211581            MIRb       SINE           SINE
6466    chr1.46218368.46218884           AluJo       SINE           SINE
6467    chr1.46218368.46218884              L2       LINE           LINE
6468    chr1.46221587.46222319           AluJb       SINE           SINE
6469    chr1.46223415.46223944           AluJb       SINE           SINE
6470    chr1.46223415.46223944            (T)n      Other  Simple_repeat
6471    chr1.46238668.46239415            LTR8        LTR            LTR
6472    chr1.46238668.46239415           THE1B        LTR            LTR
6473    chr1.46238668.46239415            LTR8        LTR            LTR
6474    chr1.46246373.46247982           AluJb       SINE           SINE
6475    chr1.46246373.46247982          LTR26B        LTR            LTR
6476    chr1.46246373.46247982             MIR       SINE           SINE
6477    chr1.46246373.46247982            MIRb       SINE           SINE
6478    chr1.46246373.46247982            (C)n      Other  Simple_repeat
6479    chr1.46254986.46255527             L2c       LINE           LINE
6480    chr1.46254986.46255527          AluSx1       SINE           SINE
6481    chr1.46259918.46260507            <NA>       <NA>           <NA>
6482    chr1.46277869.46278300            <NA>       <NA>           <NA>
6483    chr1.46284636.46285502             L2b       LINE           LINE
6484    chr1.46285714.46286388            <NA>       <NA>           <NA>
6485    chr1.46288606.46288812            <NA>       <NA>           <NA>
6486    chr1.46298462.46298968             L2c       LINE           LINE
6487    chr1.46301367.46304082        (CCTGG)n      Other  Simple_repeat
6488    chr1.46308476.46308967          MER74B        LTR            LTR
6489    chr1.46308476.46308967           AluJo       SINE           SINE
6490    chr1.46308476.46308967          MER74B        LTR            LTR
6491    chr1.46333461.46333955           AluSz       SINE           SINE
6492    chr1.46333461.46333955       MER66-int        LTR            LTR
6493    chr1.46333461.46333955          MER66C        LTR            LTR
6494    chr1.46340121.46341338          AluYf1       SINE           SINE
6495    chr1.46340121.46341338        Arthur1C        DNA            DNA
6496    chr1.46340121.46341338             L2b       LINE           LINE
6497    chr1.46340121.46341338       (CCCTTT)n      Other  Simple_repeat
6498    chr1.46347928.46348580            AluY       SINE           SINE
6499    chr1.46347928.46348580             L2c       LINE           LINE
6500    chr1.46347928.46348580          AluSq2       SINE           SINE
6501    chr1.46370183.46370527              L3       LINE           LINE
6502    chr1.46370183.46370527           MLT1I        LTR            LTR
6503    chr1.46372367.46372779            AluY       SINE           SINE
6504    chr1.46372367.46372779        MSTC-int        LTR            LTR
6505    chr1.46372367.46372779           AluSz       SINE           SINE
6506    chr1.46394154.46394878            <NA>       <NA>           <NA>
6507    chr1.46399167.46399629            <NA>       <NA>           <NA>
6508    chr1.46402114.46402495         (GTGT)n      Other  Simple_repeat
6509    chr1.46406117.46406954          AluYm1       SINE           SINE
6510    chr1.46413027.46413733            <NA>       <NA>           <NA>
6511    chr1.46425610.46426206             L2b       LINE           LINE
6512    chr1.46442258.46443141            MIRb       SINE           SINE
6513    chr1.46446805.46447172            <NA>       <NA>           <NA>
6514    chr1.46448329.46448920        (GCCCC)n      Other  Simple_repeat
6515    chr1.46448329.46448920         (GCCC)n      Other  Simple_repeat
6516    chr1.46466330.46467512            MIRb       SINE           SINE
6517    chr1.46466330.46467512        (CCCGC)n      Other  Simple_repeat
6518    chr1.46466330.46467512          (GCG)n      Other  Simple_repeat
6519    chr1.46466330.46467512       (GTGTGT)n      Other  Simple_repeat
6520    chr1.46473854.46474534             MIR       SINE           SINE
6521    chr1.46477384.46477692            <NA>       <NA>           <NA>
6522    chr1.46487744.46488010            <NA>       <NA>           <NA>
6523    chr1.46488696.46490245     (CAGCCACA)n      Other  Simple_repeat
6524    chr1.46488696.46490245        (GCGGG)n      Other  Simple_repeat
6525    chr1.46488696.46490245        (GGCCG)n      Other  Simple_repeat
6526    chr1.46508832.46509132            (C)n      Other  Simple_repeat
6527    chr1.46508832.46509132          AluSq2       SINE           SINE
6528    chr1.46516247.46516780              L3       LINE           LINE
6529    chr1.46517135.46517345            <NA>       <NA>           <NA>
6530    chr1.46520072.46521007           (CA)n      Other  Simple_repeat
6531    chr1.46520072.46521007          MER45A        DNA            DNA
6532    chr1.46522506.46522778           (TG)n      Other  Simple_repeat
6533    chr1.46527912.46528590             L2a       LINE           LINE
6534    chr1.46532820.46533726         (AAGG)n      Other  Simple_repeat
6535    chr1.46532820.46533726        (TTTTC)n      Other  Simple_repeat
6536    chr1.46532820.46533726          G-rich      Other Low_complexity
6537    chr1.46535212.46535328            <NA>       <NA>           <NA>
6538    chr1.46540010.46540349           (GC)n      Other  Simple_repeat
6539    chr1.46547963.46548272              L3       LINE           LINE
6540    chr1.46547963.46548272             MIR       SINE           SINE
6541    chr1.46556854.46557133             L2c       LINE           LINE
6542    chr1.46603463.46604520            MIRb       SINE           SINE
6543    chr1.46613930.46614179             L2c       LINE           LINE
6544    chr1.46616231.46617212        (CCCGC)n      Other  Simple_repeat
6545    chr1.46616231.46617212             L2c       LINE           LINE
6546    chr1.46622584.46622736            <NA>       <NA>           <NA>
6547    chr1.46623644.46624457            MIRc       SINE           SINE
6548    chr1.46643220.46643753            <NA>       <NA>           <NA>
6549    chr1.46667606.46668692            MIRc       SINE           SINE
6550    chr1.46667606.46668692             MIR       SINE           SINE
6551    chr1.46667606.46668692          (CCT)n      Other  Simple_repeat
6552    chr1.46667606.46668692          G-rich      Other Low_complexity
6553    chr1.46672627.46673165            <NA>       <NA>           <NA>
6554    chr1.46673636.46674023            <NA>       <NA>           <NA>
6555    chr1.46689271.46690089            <NA>       <NA>           <NA>
6556    chr1.46692112.46693647           L1ME1       LINE           LINE
6557    chr1.46718476.46719578       (CTCCGG)n      Other  Simple_repeat
6558    chr1.46718476.46719578          (GGC)n      Other  Simple_repeat
6559    chr1.46718476.46719578             L2a       LINE           LINE
6560    chr1.46725010.46725545           (GT)n      Other  Simple_repeat
6561    chr1.46725010.46725545           (TG)n      Other  Simple_repeat
6562    chr1.46735682.46736195            <NA>       <NA>           <NA>
6563    chr1.46747603.46748307            MIRc       SINE           SINE
6564    chr1.46747603.46748307            MIRb       SINE           SINE
6565    chr1.46757267.46758597          MER11D        LTR            LTR
6566    chr1.46757267.46758597      MamRep1879        DNA            DNA
6567    chr1.46767601.46768236            MIR3       SINE           SINE
6568    chr1.46767601.46768236            MIRb       SINE           SINE
6569    chr1.46806683.46806969            <NA>       <NA>           <NA>
6570    chr1.46934781.46935190            <NA>       <NA>           <NA>
6571    chr1.46990993.46991347           L1PA7       LINE           LINE
6572    chr1.47023385.47024284      (GGAGGGA)n      Other  Simple_repeat
6573    chr1.47023385.47024284         GA-rich      Other Low_complexity
6574    chr1.47147513.47147768       (TGTCCC)n      Other  Simple_repeat
6575    chr1.47173751.47174160           AluSg       SINE           SINE
6576    chr1.47175245.47175595             L2b       LINE           LINE
6577    chr1.47175245.47175595             MIR       SINE           SINE
6578    chr1.47179140.47179748             L2c       LINE           LINE
6579    chr1.47191369.47191882           (TG)n      Other  Simple_repeat
6580    chr1.47191369.47191882              L2       LINE           LINE
6581    chr1.47192762.47193363            <NA>       <NA>           <NA>
6582    chr1.47201298.47201501            MIRb       SINE           SINE
6583    chr1.47210678.47210949             L2c       LINE           LINE
6584    chr1.47211616.47212143            <NA>       <NA>           <NA>
6585    chr1.47224821.47225292            <NA>       <NA>           <NA>
6586    chr1.47235237.47236172             MIR       SINE           SINE
6587    chr1.47235237.47236172            MIRb       SINE           SINE
6588    chr1.47239153.47239581           (TC)n      Other  Simple_repeat
6589    chr1.47241621.47241964            <NA>       <NA>           <NA>
6590    chr1.47313425.47314545             L2c       LINE           LINE
6591    chr1.47333202.47335055           AluJo       SINE           SINE
6592    chr1.47333202.47335055             L2a       LINE           LINE
6593    chr1.47333202.47335055        (CCCGC)n      Other  Simple_repeat
6594    chr1.47388600.47389233           (CA)n      Other  Simple_repeat
6595    chr1.47409111.47409956      Charlie23a        DNA            DNA
6596    chr1.47409111.47409956             MIR       SINE           SINE
6597    chr1.47409111.47409956         (TCAT)n      Other  Simple_repeat
6598    chr1.47409111.47409956         (GTCA)n      Other  Simple_repeat
6599    chr1.47416492.47417472          (GGC)n      Other  Simple_repeat
6600    chr1.47416492.47417472          (CGC)n      Other  Simple_repeat
6601    chr1.47424154.47424865            MIRb       SINE           SINE
6602    chr1.47432204.47433022            <NA>       <NA>           <NA>
6603    chr1.47436562.47436700             MIR       SINE           SINE
6604    chr1.47437049.47438232          (GCG)n      Other  Simple_repeat
6605    chr1.47444575.47445279        (GGCGC)n      Other  Simple_repeat
6606    chr1.47449930.47450766            <NA>       <NA>           <NA>
6607    chr1.47474676.47474883            <NA>       <NA>           <NA>
6608    chr1.47487780.47488334             L2b       LINE           LINE
6609    chr1.47491288.47491829             L2b       LINE           LINE
6610    chr1.47507871.47509111          G-rich      Other Low_complexity
6611    chr1.47507871.47509111            (T)n      Other  Simple_repeat
6612    chr1.47521185.47521851             MIR       SINE           SINE
6613    chr1.47521185.47521851         (GTGA)n      Other  Simple_repeat
6614    chr1.47527751.47528007         GA-rich      Other Low_complexity
6615    chr1.47533043.47533600          (CTC)n      Other  Simple_repeat
6616    chr1.47533043.47533600         GA-rich      Other Low_complexity
6617    chr1.47534127.47534844            MIRb       SINE           SINE
6618    chr1.47534127.47534844             L2c       LINE           LINE
6619    chr1.47547628.47547971             L2c       LINE           LINE
6620    chr1.47547628.47547971             L2c       LINE           LINE
6621    chr1.47551829.47552417           LTR33        LTR            LTR
6622    chr1.47561514.47562172             L2b       LINE           LINE
6623    chr1.47569670.47570297           AluJb       SINE           SINE
6624    chr1.47569670.47570297            MIRb       SINE           SINE
6625    chr1.47569670.47570297             L2c       LINE           LINE
6626    chr1.47588018.47588822       Tigger19b        DNA            DNA
6627    chr1.47588018.47588822           (GT)n      Other  Simple_repeat
6628    chr1.47588018.47588822            MIR3       SINE           SINE
6629    chr1.47593031.47593500          MER91B        DNA            DNA
6630    chr1.47627386.47628029             L2c       LINE           LINE
6631    chr1.47650288.47650727          MER5C1        DNA            DNA
6632    chr1.47679301.47679909     MamGypLTR1d        LTR            LTR
6633    chr1.47679301.47679909     MamGypLTR1d        LTR            LTR
6634    chr1.47684980.47685562         GA-rich      Other Low_complexity
6635    chr1.47686720.47687078            <NA>       <NA>           <NA>
6636    chr1.47696822.47697551            MIRc       SINE           SINE
6637    chr1.47708792.47710958            MIRc       SINE           SINE
6638    chr1.47708792.47710958            MIRc       SINE           SINE
6639    chr1.47725669.47726681            MIRb       SINE           SINE
6640    chr1.47725669.47726681             MIR       SINE           SINE
6641    chr1.47728466.47728659       MER65-int        LTR            LTR
6642    chr1.47738508.47738922           (AC)n      Other  Simple_repeat
6643    chr1.47759161.47759515            <NA>       <NA>           <NA>
6644    chr1.47767473.47768257            MIRb       SINE           SINE
6645    chr1.47767473.47768257             L2b       LINE           LINE
6646    chr1.47768524.47768878             MIR       SINE           SINE
6647    chr1.47768524.47768878            MIRc       SINE           SINE
6648    chr1.47785440.47785990             MIR       SINE           SINE
6649    chr1.47796538.47797175          MER91B        DNA            DNA
6650    chr1.47796538.47797175            MIRb       SINE           SINE
6651    chr1.47797440.47797944            <NA>       <NA>           <NA>
6652    chr1.47804100.47804506            <NA>       <NA>           <NA>
6653    chr1.47822952.47823684              L3       LINE           LINE
6654    chr1.47829273.47829721            <NA>       <NA>           <NA>
6655    chr1.47839330.47839668         (CACA)n      Other  Simple_repeat
6656    chr1.47840963.47841252            <NA>       <NA>           <NA>
6657    chr1.47871700.47872389            MIR3       SINE           SINE
6658    chr1.47875068.47875335            <NA>       <NA>           <NA>
6659    chr1.47875920.47876676            MIRc       SINE           SINE
6660    chr1.47881640.47882297            <NA>       <NA>           <NA>
6661    chr1.47892073.47892217             L2a       LINE           LINE
6662    chr1.47892572.47892956             L2a       LINE           LINE
6663    chr1.47894706.47895182             L2a       LINE           LINE
6664    chr1.47898269.47898677          MER46C        DNA            DNA
6665    chr1.47905975.47906807            MIR3       SINE           SINE
6666    chr1.47905975.47906807             MIR       SINE           SINE
6667    chr1.47911382.47911727            <NA>       <NA>           <NA>
6668    chr1.47914259.47914572            <NA>       <NA>           <NA>
6669    chr1.47924622.47924974            <NA>       <NA>           <NA>
6670    chr1.47932847.47933923            MIRb       SINE           SINE
6671    chr1.47932847.47933923            AluY       SINE           SINE
6672    chr1.47932847.47933923             L2c       LINE           LINE
6673    chr1.47932847.47933923             L2c       LINE           LINE
6674    chr1.47932847.47933923            MER3        DNA            DNA
6675    chr1.47934207.47934538            MIRb       SINE           SINE
6676    chr1.47940456.47940683             MIR       SINE           SINE
6677    chr1.47940456.47940683        MIR1_Amn       SINE           SINE
6678    chr1.47942052.47942568             L2b       LINE           LINE
6679    chr1.47944685.47945023         LTR16B1        LTR            LTR
6680    chr1.47944685.47945023             L2c       LINE           LINE
6681    chr1.47950425.47950750             L2b       LINE           LINE
6682    chr1.47972873.47973415             L2a       LINE           LINE
6683    chr1.47972873.47973415              L3       LINE           LINE
6684    chr1.47984092.47984617             L2c       LINE           LINE
6685    chr1.47986615.47987214             L2c       LINE           LINE
6686    chr1.47996154.47998034          (CGG)n      Other  Simple_repeat
6687    chr1.47996154.47998034        (GGGCC)n      Other  Simple_repeat
6688    chr1.47996154.47998034         (CGCT)n      Other  Simple_repeat
6689    chr1.47996154.47998034        (CCTCC)n      Other  Simple_repeat
6690    chr1.47999218.47999494           MADE2        DNA            DNA
6691    chr1.48006922.48007610           AluSc       SINE           SINE
6692    chr1.48006922.48007610             L2b       LINE           LINE
6693    chr1.48006922.48007610        MamSINE1       SINE           SINE
6694    chr1.48006922.48007610         MamRTE1       LINE           LINE
6695    chr1.48017744.48018198            <NA>       <NA>           <NA>
6696    chr1.48024963.48025472            MIRb       SINE           SINE
6697    chr1.48036613.48037172              L3       LINE           LINE
6698    chr1.48036613.48037172             L2c       LINE           LINE
6699    chr1.48039157.48039978             L2b       LINE           LINE
6700    chr1.48039157.48039978            (A)n      Other  Simple_repeat
6701    chr1.48043677.48044206            MIR3       SINE           SINE
6702    chr1.48048006.48048508            MIR3       SINE           SINE
6703    chr1.48048006.48048508         (ATTA)n      Other  Simple_repeat
6704    chr1.48048006.48048508             L2b       LINE           LINE
6705    chr1.48048847.48049306            MIRb       SINE           SINE
6706    chr1.48049762.48050664             L3b       LINE           LINE
6707    chr1.48049762.48050664             L2b       LINE           LINE
6708    chr1.48052441.48052902            <NA>       <NA>           <NA>
6709    chr1.48060964.48061528            <NA>       <NA>           <NA>
6710    chr1.48068174.48068767            MIRb       SINE           SINE
6711    chr1.48068174.48068767             L2c       LINE           LINE
6712    chr1.48069810.48070413            <NA>       <NA>           <NA>
6713    chr1.48082360.48082535            MIR3       SINE           SINE
6714    chr1.48093744.48094277           MER5B        DNA            DNA
6715    chr1.48093744.48094277              L3       LINE           LINE
6716    chr1.48109250.48109935            <NA>       <NA>           <NA>
6717    chr1.48114915.48115304            L1M1       LINE           LINE
6718    chr1.48127866.48128060           L1MA9       LINE           LINE
6719    chr1.48202040.48202595            MER3        DNA            DNA
6720    chr1.48215220.48215738             L2c       LINE           LINE
6721    chr1.48217945.48218135           L1MB3       LINE           LINE
6722    chr1.48217945.48218135           L1MB3       LINE           LINE
6723    chr1.48217945.48218135           MLT1B        LTR            LTR
6724    chr1.48226994.48227752           (GT)n      Other  Simple_repeat
6725    chr1.48228257.48228494             MIR       SINE           SINE
6726    chr1.48236755.48237342            <NA>       <NA>           <NA>
6727    chr1.48246816.48247156            MIRc       SINE           SINE
6728    chr1.48414095.48414762    Tigger2b_Pri        DNA            DNA
6729    chr1.48414095.48414762           L1MCa       LINE           LINE
6730    chr1.48414095.48414762           L1MCb       LINE           LINE
6731    chr1.48414095.48414762           L1MCa       LINE           LINE
6732    chr1.48414095.48414762           L1ME3       LINE           LINE
6733    chr1.48471599.48472607          (GGC)n      Other  Simple_repeat
6734    chr1.48471599.48472607        MIR1_Amn       SINE           SINE
6735    chr1.48494292.48494835            <NA>       <NA>           <NA>
6736    chr1.48498194.48498923          MER20B        DNA            DNA
6737    chr1.48498194.48498923      MamGypLTR3        LTR            LTR
6738    chr1.48522308.48522626            MIRb       SINE           SINE
6739    chr1.48526326.48526607            MIRb       SINE           SINE
6740    chr1.48526326.48526607       (AGCAGT)n      Other  Simple_repeat
6741    chr1.48530696.48531229           (TC)n      Other  Simple_repeat
6742    chr1.48540411.48541108             L2c       LINE           LINE
6743    chr1.48552544.48553472           MER20        DNA            DNA
6744    chr1.48552544.48553472            MIR3       SINE           SINE
6745    chr1.48563902.48564664              L2       LINE           LINE
6746    chr1.48570038.48570249            <NA>       <NA>           <NA>
6747    chr1.48570629.48570983            MIRb       SINE           SINE
6748    chr1.48571158.48571932            MIRb       SINE           SINE
6749    chr1.48571158.48571932        L4_B_Mam       LINE           LINE
6750    chr1.48572655.48573093       (CTGCCC)n      Other  Simple_repeat
6751    chr1.48596002.48596371            MIRc       SINE           SINE
6752    chr1.48610805.48611438            <NA>       <NA>           <NA>
6753    chr1.48619460.48619932            MIRb       SINE           SINE
6754    chr1.48641028.48641658            MIRb       SINE           SINE
6755    chr1.48641028.48641658             L2b       LINE           LINE
6756    chr1.48644336.48644531             L2b       LINE           LINE
6757    chr1.48654243.48655007             L2b       LINE           LINE
6758    chr1.48674743.48674927             MIR       SINE           SINE
6759    chr1.48674743.48674927             L2c       LINE           LINE
6760    chr1.48676641.48677755           MER5B        DNA            DNA
6761    chr1.48676641.48677755            MIR3       SINE           SINE
6762    chr1.48676641.48677755        (AGGGA)n      Other  Simple_repeat
6763    chr1.48676641.48677755            MIRb       SINE           SINE
6764    chr1.48676641.48677755       Tigger15a        DNA            DNA
6765    chr1.48678012.48678229            <NA>       <NA>           <NA>
6766    chr1.48688316.48688658            <NA>       <NA>           <NA>
6767    chr1.48697021.48697382            MIRc       SINE           SINE
6768    chr1.48708771.48709309            MIR3       SINE           SINE
6769    chr1.48775867.48776286            <NA>       <NA>           <NA>
6770    chr1.48776469.48777146            <NA>       <NA>           <NA>
6771    chr1.48777597.48777867            <NA>       <NA>           <NA>
6772    chr1.48794792.48795076              L2       LINE           LINE
6773    chr1.48817587.48818000            <NA>       <NA>           <NA>
6774    chr1.48853048.48853329           MLT1F        LTR            LTR
6775    chr1.48876313.48876614            <NA>       <NA>           <NA>
6776    chr1.48878307.48878909            MIR3       SINE           SINE
6777    chr1.48878307.48878909            MIRc       SINE           SINE
6778    chr1.48878307.48878909             L2b       LINE           LINE
6779    chr1.48916214.48916772           (AC)n      Other  Simple_repeat
6780    chr1.48917833.48918142            MIRb       SINE           SINE
6781    chr1.48931409.48932019             L2a       LINE           LINE
6782    chr1.48931409.48932019           AluJb       SINE           SINE
6783    chr1.48931409.48932019             L2a       LINE           LINE
6784    chr1.49333922.49334296            MIRc       SINE           SINE
6785    chr1.50023396.50024272      (GGCGGCA)n      Other  Simple_repeat
6786    chr1.50023396.50024272          G-rich      Other Low_complexity
6787    chr1.50060386.50060723            <NA>       <NA>           <NA>
6788    chr1.50128568.50128966             L2c       LINE           LINE
6789    chr1.50128568.50128966            MIRb       SINE           SINE
6790    chr1.50137896.50138183            MIRb       SINE           SINE
6791    chr1.50176319.50176555            MIRb       SINE           SINE
6792    chr1.50180925.50181632            MIRb       SINE           SINE
6793    chr1.50180925.50181632            MIRb       SINE           SINE
6794    chr1.50192011.50192688           (CA)n      Other  Simple_repeat
6795    chr1.50271739.50272455            MIRc       SINE           SINE
6796    chr1.50279908.50280230             L2b       LINE           LINE
6797    chr1.50308773.50309333            MIR3       SINE           SINE
6798    chr1.50332940.50334028       (CCCCAC)n      Other  Simple_repeat
6799    chr1.50332940.50334028       (CCAGAA)n      Other  Simple_repeat
6800    chr1.50332940.50334028            MIRc       SINE           SINE
6801    chr1.50332940.50334028             MIR       SINE           SINE
6802    chr1.50348431.50349271            MIRb       SINE           SINE
6803    chr1.50348431.50349271             L2b       LINE           LINE
6804    chr1.50368358.50369288             MIR       SINE           SINE
6805    chr1.50368358.50369288          (GAT)n      Other  Simple_repeat
6806    chr1.50371569.50372067           MLT1C        LTR            LTR
6807    chr1.50418656.50419647          (CGG)n      Other  Simple_repeat
6808    chr1.50422949.50423586            <NA>       <NA>           <NA>
6809    chr1.50425785.50426203            <NA>       <NA>           <NA>
6810    chr1.50427584.50428202            MIRb       SINE           SINE
6811    chr1.50427584.50428202            MIRb       SINE           SINE
6812    chr1.50430550.50431191           (AC)n      Other  Simple_repeat
6813    chr1.50444251.50444605              L3       LINE           LINE
6814    chr1.50474935.50475280              L3       LINE           LINE
6815    chr1.50572426.50572800           L1MC4       LINE           LINE
6816    chr1.50572426.50572800             MIR       SINE           SINE
6817    chr1.50588682.50589264            <NA>       <NA>           <NA>
6818    chr1.50591611.50591940          AluSx1       SINE           SINE
6819    chr1.50591611.50591940             L2c       LINE           LINE
6820    chr1.50603314.50604249            MIRb       SINE           SINE
6821    chr1.50605392.50605754            <NA>       <NA>           <NA>
6822    chr1.50620697.50621326          L1PA16       LINE           LINE
6823    chr1.50633405.50633692            <NA>       <NA>           <NA>
6824    chr1.50635100.50635896           AluJb       SINE           SINE
6825    chr1.50658491.50658929            <NA>       <NA>           <NA>
6826    chr1.50697850.50698323           (TG)n      Other  Simple_repeat
6827    chr1.50705129.50705367            <NA>       <NA>           <NA>
6828    chr1.50705717.50706075            <NA>       <NA>           <NA>
6829    chr1.50720398.50720912         MER34C2        LTR            LTR
6830    chr1.50829148.50829612            L1M5       LINE           LINE
6831    chr1.50873315.50874030         Tigger1        DNA            DNA
6832    chr1.50873315.50874030          MER66A        LTR            LTR
6833    chr1.50873315.50874030          MER66C        LTR            LTR
6834    chr1.50897979.50898394           MLT1H        LTR            LTR
6835    chr1.50897979.50898394             FAM       SINE           SINE
6836    chr1.50931307.50931842           THE1A        LTR            LTR
6837    chr1.50931307.50931842            AluY       SINE           SINE
6838    chr1.50959301.50960784           (CA)n      Other  Simple_repeat
6839    chr1.50959301.50960784          (CCG)n      Other  Simple_repeat
6840    chr1.50959301.50960784         (CGAG)n      Other  Simple_repeat
6841    chr1.50959301.50960784          (CGC)n      Other  Simple_repeat
6842    chr1.50968098.50970258          G-rich      Other Low_complexity
6843    chr1.50977075.50977466            <NA>       <NA>           <NA>
6844    chr1.50977568.50978477          G-rich      Other Low_complexity
6845    chr1.51061212.51061773           MSTB1        LTR            LTR
6846    chr1.51061212.51061773            L1M4       LINE           LINE
6847    chr1.51063215.51063702            L1M4       LINE           LINE
6848    chr1.51063215.51063702         (ATAC)n      Other  Simple_repeat
6849    chr1.51063215.51063702           (TG)n      Other  Simple_repeat
6850    chr1.51070640.51071010            <NA>       <NA>           <NA>
6851    chr1.51192168.51192609              L2       LINE           LINE
6852    chr1.51192168.51192609         (TATT)n      Other  Simple_repeat
6853    chr1.51192168.51192609           MER20        DNA            DNA
6854    chr1.51192168.51192609        L2-3_Crp       LINE           LINE
6855    chr1.51235146.51235347             L2b       LINE           LINE
6856    chr1.51235870.51237311          (GCA)n      Other  Simple_repeat
6857    chr1.51261259.51261899        Charlie4        DNA            DNA
6858    chr1.51261259.51261899          AluSx3       SINE           SINE
6859    chr1.51261259.51261899          AluYh3       SINE           SINE
6860    chr1.51264451.51264973            MIR3       SINE           SINE
6861    chr1.51265640.51266066          AluSz6       SINE           SINE
6862    chr1.51265640.51266066            MIRb       SINE           SINE
6863    chr1.51278686.51279237           AluSc       SINE           SINE
6864    chr1.51278686.51279237             L2b       LINE           LINE
6865    chr1.51278686.51279237        Tigger3b        DNA            DNA
6866    chr1.51284208.51285063            <NA>       <NA>           <NA>
6867    chr1.51295960.51297268           AluSz       SINE           SINE
6868    chr1.51313702.51314706             L2c       LINE           LINE
6869    chr1.51313702.51314706          FLAM_C       SINE           SINE
6870    chr1.51313702.51314706             L2c       LINE           LINE
6871    chr1.51313702.51314706            MIRb       SINE           SINE
6872    chr1.51313702.51314706            MIRb       SINE           SINE
6873    chr1.51326012.51327139             L2b       LINE           LINE
6874    chr1.51331271.51331699              L3       LINE           LINE
6875    chr1.51344537.51345663          (CGG)n      Other  Simple_repeat
6876    chr1.51344537.51345663      Charlie16a        DNA            DNA
6877    chr1.51410192.51411448           AluJb       SINE           SINE
6878    chr1.51410192.51411448            L1M5       LINE           LINE
6879    chr1.51410192.51411448             MIR       SINE           SINE
6880    chr1.51410192.51411448      Charlie23a        DNA            DNA
6881    chr1.51416119.51416402            <NA>       <NA>           <NA>
6882    chr1.51417521.51418001            <NA>       <NA>           <NA>
6883    chr1.51418357.51418789            MIRb       SINE           SINE
6884    chr1.51421914.51422236            <NA>       <NA>           <NA>
6885    chr1.51423156.51423860            <NA>       <NA>           <NA>
6886    chr1.51429725.51430450          AluSx1       SINE           SINE
6887    chr1.51429725.51430450           AluSz       SINE           SINE
6888    chr1.51442169.51442558            <NA>       <NA>           <NA>
6889    chr1.51488535.51489034             MIR       SINE           SINE
6890    chr1.51488535.51489034           AluJo       SINE           SINE
6891    chr1.51488535.51489034           MLT1J        LTR            LTR
6892    chr1.51517891.51519485          G-rich      Other Low_complexity
6893    chr1.51517891.51519485         (CCCG)n      Other  Simple_repeat
6894    chr1.51520227.51520843             L2b       LINE           LINE
6895    chr1.51520227.51520843             L2c       LINE           LINE
6896    chr1.51554011.51554205           AluJr       SINE           SINE
6897    chr1.51554011.51554205       (TACATA)n      Other  Simple_repeat
6898    chr1.51554011.51554205           (AG)n      Other  Simple_repeat
6899    chr1.51558153.51558776            AluY       SINE           SINE
6900    chr1.51558153.51558776            LTR8        LTR            LTR
6901    chr1.51559073.51559658           (TC)n      Other  Simple_repeat
6902    chr1.51559073.51559658           (AC)n      Other  Simple_repeat
6903    chr1.51559073.51559658          MER5A1        DNA            DNA
6904    chr1.51564019.51564596          AluJr4       SINE           SINE
6905    chr1.51564019.51564596        (GAAAA)n      Other  Simple_repeat
6906    chr1.51569487.51570876            MIRb       SINE           SINE
6907    chr1.51569487.51570876             MIR       SINE           SINE
6908    chr1.51569487.51570876            MIR3       SINE           SINE
6909    chr1.51569487.51570876            MIRc       SINE           SINE
6910    chr1.51569487.51570876          AluSx1       SINE           SINE
6911    chr1.51572351.51572695            MIRc       SINE           SINE
6912    chr1.51572351.51572695             MIR       SINE           SINE
6913    chr1.51583490.51584079            MIRb       SINE           SINE
6914    chr1.51583490.51584079           (CA)n      Other  Simple_repeat
6915    chr1.51583490.51584079          FLAM_A       SINE           SINE
6916    chr1.51612414.51612723            MIRb       SINE           SINE
6917    chr1.51612414.51612723         MamRTE1       LINE           LINE
6918    chr1.51616916.51617975            <NA>       <NA>           <NA>
6919    chr1.51622352.51623367             L2b       LINE           LINE
6920    chr1.51622352.51623367          MLT1F1        LTR            LTR
6921    chr1.51622352.51623367             L2b       LINE           LINE
6922    chr1.51636918.51637687             MIR       SINE           SINE
6923    chr1.51636918.51637687           AluSq       SINE           SINE
6924    chr1.51636918.51637687             MIR       SINE           SINE
6925    chr1.51636918.51637687       MamRep605      Other           LTR?
6926    chr1.51644590.51644924           AluSx       SINE           SINE
6927    chr1.51644590.51644924             L2c       LINE           LINE
6928    chr1.51644590.51644924             L2a       LINE           LINE
6929    chr1.51644590.51644924            MSTD        LTR            LTR
6930    chr1.51648240.51648816        MIR1_Amn       SINE           SINE
6931    chr1.51653268.51653408            <NA>       <NA>           <NA>
6932    chr1.51660773.51661562             L2c       LINE           LINE
6933    chr1.51660773.51661562            MIRc       SINE           SINE
6934    chr1.51664558.51665241          AluSz6       SINE           SINE
6935    chr1.51664558.51665241          L1ME3A       LINE           LINE
6936    chr1.51664558.51665241            MIRb       SINE           SINE
6937    chr1.51664558.51665241            MER3        DNA            DNA
6938    chr1.51664558.51665241           AluSp       SINE           SINE
6939    chr1.51666516.51666959            MER3        DNA            DNA
6940    chr1.51666516.51666959              L2       LINE           LINE
6941    chr1.51671625.51672280             L2a       LINE           LINE
6942    chr1.51671625.51672280             L2a       LINE           LINE
6943    chr1.51688759.51688987            <NA>       <NA>           <NA>
6944    chr1.51690826.51691399        Tigger3b        DNA            DNA
6945    chr1.51690826.51691399           AluSg       SINE           SINE
6946    chr1.51693324.51694051           AluJo       SINE           SINE
6947    chr1.51693324.51694051             L2a       LINE           LINE
6948    chr1.51693324.51694051       Charlie1a        DNA            DNA
6949    chr1.51729136.51730214          G-rich      Other Low_complexity
6950    chr1.51736796.51737036            <NA>       <NA>           <NA>
6951    chr1.51750822.51751358           AluSg       SINE           SINE
6952    chr1.51754019.51754228            <NA>       <NA>           <NA>
6953    chr1.51768821.51769512        Charlie8        DNA            DNA
6954    chr1.51768821.51769512            MIRb       SINE           SINE
6955    chr1.51784223.51784386            <NA>       <NA>           <NA>
6956    chr1.51784936.51785743             L2b       LINE           LINE
6957    chr1.51792987.51793165            <NA>       <NA>           <NA>
6958    chr1.51799346.51800071           L1PA6       LINE           LINE
6959    chr1.51799346.51800071         Zaphod2        DNA            DNA
6960    chr1.51799346.51800071       Tigger15a        DNA            DNA
6961    chr1.51799346.51800071           AluJo       SINE           SINE
6962    chr1.51812944.51813680          AluSx3       SINE           SINE
6963    chr1.51812944.51813680          FLAM_C       SINE           SINE
6964    chr1.51812944.51813680       (ATATTA)n      Other  Simple_repeat
6965    chr1.51812944.51813680            MIR3       SINE           SINE
6966    chr1.51812944.51813680          FLAM_C       SINE           SINE
6967    chr1.51829114.51829353           AluJb       SINE           SINE
6968    chr1.51877988.51879409              L3       LINE           LINE
6969    chr1.51877988.51879409      (CCCTCCG)n      Other  Simple_repeat
6970    chr1.51896912.51898763            MIRb       SINE           SINE
6971    chr1.51896912.51898763         (GTTT)n      Other  Simple_repeat
6972    chr1.51896912.51898763           AluJb       SINE           SINE
6973    chr1.51896912.51898763           AluSc       SINE           SINE
6974    chr1.51896912.51898763             L2c       LINE           LINE
6975    chr1.51924133.51924816             L2c       LINE           LINE
6976    chr1.51926272.51926443             L2b       LINE           LINE
6977    chr1.51926272.51926443           MLT1I        LTR            LTR
6978    chr1.51946229.51946652             L2b       LINE           LINE
6979    chr1.51946229.51946652             MIR       SINE           SINE
6980    chr1.51955471.51956090           AluSz       SINE           SINE
6981    chr1.51955471.51956090            MIR3       SINE           SINE
6982    chr1.51957312.51957884            MIRb       SINE           SINE
6983    chr1.51966523.51967107            MIR3       SINE           SINE
6984    chr1.51966523.51967107          AluSq2       SINE           SINE
6985    chr1.51969118.51969873           AluJb       SINE           SINE
6986    chr1.51969118.51969873           LTR79        LTR            LTR
6987    chr1.51969118.51969873            MIRb       SINE           SINE
6988    chr1.51970368.51970751            AluY       SINE           SINE
6989    chr1.51978818.51979233            <NA>       <NA>           <NA>
6990    chr1.51990379.51991155          G-rich      Other Low_complexity
6991    chr1.51990379.51991155              L2       LINE           LINE
6992    chr1.52002053.52002600           AluJo       SINE           SINE
6993    chr1.52002053.52002600            MIRb       SINE           SINE
6994    chr1.52005336.52005952          AluSc5       SINE           SINE
6995    chr1.52005336.52005952           LTR61        LTR            LTR
6996    chr1.52006301.52006842         LTR5_Hs        LTR            LTR
6997    chr1.52032478.52033998            <NA>       <NA>           <NA>
6998    chr1.52054720.52056970          (CCG)n      Other  Simple_repeat
6999    chr1.52127321.52127815            MIRb       SINE           SINE
7000    chr1.52139881.52140476             MIR       SINE           SINE
7001    chr1.52141755.52143040          (AGC)n      Other  Simple_repeat
7002    chr1.52153883.52154361 ERV3-16A3_I-int        LTR            LTR
7003    chr1.52159300.52159741 ERV3-16A3_I-int        LTR            LTR
7004    chr1.52159300.52159741   ERV3-16A3_LTR        LTR            LTR
7005    chr1.52190227.52191082            L1M4       LINE           LINE
7006    chr1.52190227.52191082         (TTCC)n      Other  Simple_repeat
7007    chr1.52190227.52191082           AluJb       SINE           SINE
7008    chr1.52203971.52204534           L1MC1       LINE           LINE
7009    chr1.52203971.52204534           AluSz       SINE           SINE
7010    chr1.52206818.52207162          AluSx1       SINE           SINE
7011    chr1.52206818.52207162          MLT2B1        LTR            LTR
7012    chr1.52206818.52207162         (TATG)n      Other  Simple_repeat
7013    chr1.52206818.52207162          MLT2B1        LTR            LTR
7014    chr1.52296114.52296549           (TA)n      Other  Simple_repeat
7015    chr1.52296114.52296549            MIRb       SINE           SINE
7016    chr1.52296114.52296549          L1M4a2       LINE           LINE
7017    chr1.52305386.52307198          AluSq2       SINE           SINE
7018    chr1.52305386.52307198          MER52A        LTR            LTR
7019    chr1.52305386.52307198         MamRTE1       LINE           LINE
7020    chr1.52348736.52349136            <NA>       <NA>           <NA>
7021    chr1.52365081.52366730            MER3        DNA            DNA
7022    chr1.52365081.52366730             L2b       LINE           LINE
7023    chr1.52365081.52366730        (CCGCG)n      Other  Simple_repeat
7024    chr1.52365081.52366730         (CTCG)n      Other  Simple_repeat
7025    chr1.52368489.52369119            <NA>       <NA>           <NA>
7026    chr1.52386363.52386888           AluJb       SINE           SINE
7027    chr1.52403695.52405209            MIRc       SINE           SINE
7028    chr1.52403695.52405209             L2a       LINE           LINE
7029    chr1.52403695.52405209             L2a       LINE           LINE
7030    chr1.52414154.52414522           MLT1H        LTR            LTR
7031    chr1.52423937.52424562            <NA>       <NA>           <NA>
7032    chr1.52435173.52435463            <NA>       <NA>           <NA>
7033    chr1.52482307.52482730          L1ME4a       LINE           LINE
7034    chr1.52482307.52482730           AluJb       SINE           SINE
7035    chr1.52517225.52517661             L2c       LINE           LINE
7036    chr1.52517225.52517661              L3       LINE           LINE
7037    chr1.52552189.52553922       (CCGCCG)n      Other  Simple_repeat
7038    chr1.52552189.52553922          G-rich      Other Low_complexity
7039    chr1.52574561.52574941            MIRb       SINE           SINE
7040    chr1.52574561.52574941             L2c       LINE           LINE
7041    chr1.52592745.52593248            MIR3       SINE           SINE
7042    chr1.52592745.52593248            MIR3       SINE           SINE
7043    chr1.52592745.52593248             L2c       LINE           LINE
7044    chr1.52602353.52602767       (GGCTGC)n      Other  Simple_repeat
7045    chr1.52603912.52604514             L2a       LINE           LINE
7046    chr1.52603912.52604514             MIR       SINE           SINE
7047    chr1.52603912.52604514             L2b       LINE           LINE
7048    chr1.52631761.52632220             L2b       LINE           LINE
7049    chr1.52632434.52633658            MIRb       SINE           SINE
7050    chr1.52636756.52637349            MIRb       SINE           SINE
7051    chr1.52636756.52637349             L2b       LINE           LINE
7052    chr1.52658724.52660738       (TGTGTG)n      Other  Simple_repeat
7053    chr1.52658724.52660738          AluJr4       SINE           SINE
7054    chr1.52658724.52660738             L2b       LINE           LINE
7055    chr1.52658724.52660738           MER5A        DNA            DNA
7056    chr1.52662709.52663146             L2b       LINE           LINE
7057    chr1.52669626.52670157          AluSz6       SINE           SINE
7058    chr1.52669626.52670157       Charlie4z        DNA            DNA
7059    chr1.52673064.52673316            MIRc       SINE           SINE
7060    chr1.52674812.52675267              L3       LINE           LINE
7061    chr1.52674812.52675267          MER45A        DNA            DNA
7062    chr1.52676330.52676819            MIRb       SINE           SINE
7063    chr1.52676330.52676819             MIR       SINE           SINE
7064    chr1.52686135.52686673           AluSz       SINE           SINE
7065    chr1.52686135.52686673            AluY       SINE           SINE
7066    chr1.52697618.52698884            AluY       SINE           SINE
7067    chr1.52697618.52698884             L2a       LINE           LINE
7068    chr1.52697618.52698884        (GGCGG)n      Other  Simple_repeat
7069    chr1.52697618.52698884             L2c       LINE           LINE
7070    chr1.52697618.52698884             L2c       LINE           LINE
7071    chr1.52702924.52703739            MIRb       SINE           SINE
7072    chr1.52702924.52703739            MIR3       SINE           SINE
7073    chr1.52702924.52703739          AluSc8       SINE           SINE
7074    chr1.52708164.52708792             FAM       SINE           SINE
7075    chr1.52708164.52708792             L2c       LINE           LINE
7076    chr1.52708164.52708792           AluSx       SINE           SINE
7077    chr1.52709108.52709439            <NA>       <NA>           <NA>
7078    chr1.52726297.52727441       (GGCTGC)n      Other  Simple_repeat
7079    chr1.52744182.52744627           AluSz       SINE           SINE
7080    chr1.52744182.52744627         Tigger3        DNA            DNA
7081    chr1.52744182.52744627        Tigger3d        DNA            DNA
7082    chr1.52744182.52744627             MIR       SINE           SINE
7083    chr1.52744182.52744627          AluSc8       SINE           SINE
7084    chr1.52750775.52751518           L1MB8       LINE           LINE
7085    chr1.52750775.52751518           AluJb       SINE           SINE
7086    chr1.52750775.52751518           L1MB8       LINE           LINE
7087    chr1.52750775.52751518           AluSz       SINE           SINE
7088    chr1.52751582.52752078           AluSz       SINE           SINE
7089    chr1.52751582.52752078          MER21C        LTR            LTR
7090    chr1.52751582.52752078          MER21C        LTR            LTR
7091    chr1.52752189.52752921          MER21C        LTR            LTR
7092    chr1.52752189.52752921          MER21C        LTR            LTR
7093    chr1.52752189.52752921           AluSg       SINE           SINE
7094    chr1.52791995.52792395          MER58A        DNA            DNA
7095    chr1.52791995.52792395         (ATGA)n      Other  Simple_repeat
7096    chr1.52791995.52792395             MIR       SINE           SINE
7097    chr1.52803798.52804278           AluJb       SINE           SINE
7098    chr1.52803798.52804278           AluJo       SINE           SINE
7099    chr1.52814524.52814888             L2a       LINE           LINE
7100    chr1.52814524.52814888           AluJr       SINE           SINE
7101    chr1.52814524.52814888           (AC)n      Other  Simple_repeat
7102    chr1.52814524.52814888           AluSz       SINE           SINE
7103    chr1.52833417.52833986            AluY       SINE           SINE
7104    chr1.52833417.52833986       MER41-int        LTR            LTR
7105    chr1.52833417.52833986          AluSx3       SINE           SINE
7106    chr1.52842469.52843664           (AT)n      Other  Simple_repeat
7107    chr1.52842469.52843664        (GTCCC)n      Other  Simple_repeat
7108    chr1.52868813.52869518        (TTATT)n      Other  Simple_repeat
7109    chr1.52868813.52869518           AluSg       SINE           SINE
7110    chr1.52868813.52869518          L1ME4b       LINE           LINE
7111    chr1.52868813.52869518            L1M4       LINE           LINE
7112    chr1.52868813.52869518           SVA_D Retroposon     Retroposon
7113    chr1.52904988.52905870            <NA>       <NA>           <NA>
7114    chr1.52906322.52906523            <NA>       <NA>           <NA>
7115    chr1.52907634.52907793            <NA>       <NA>           <NA>
7116    chr1.52921115.52922057            MIRb       SINE           SINE
7117    chr1.52926922.52928265             L2c       LINE           LINE
7118    chr1.52947033.52947233          AluSx1       SINE           SINE
7119    chr1.52947033.52947233           AluJr       SINE           SINE
7120    chr1.53011248.53011822          MER21C        LTR            LTR
7121    chr1.53014744.53015638            <NA>       <NA>           <NA>
7122    chr1.53016605.53016982             L2b       LINE           LINE
7123    chr1.53025049.53025924             L2a       LINE           LINE
7124    chr1.53032401.53032781             L2c       LINE           LINE
7125    chr1.53046980.53047370         MLT1E1A        LTR            LTR
7126    chr1.53047719.53048592             L2b       LINE           LINE
7127    chr1.53047719.53048592             L2b       LINE           LINE
7128    chr1.53049066.53049385            <NA>       <NA>           <NA>
7129    chr1.53061993.53063765            MIR3       SINE           SINE
7130    chr1.53086595.53087076            <NA>       <NA>           <NA>
7131    chr1.53094144.53095382             L2b       LINE           LINE
7132    chr1.53094144.53095382            MIRb       SINE           SINE
7133    chr1.53104387.53104782             L2b       LINE           LINE
7134    chr1.53104387.53104782             L2b       LINE           LINE
7135    chr1.53108994.53109539            <NA>       <NA>           <NA>
7136    chr1.53112509.53113047           LTR78        LTR            LTR
7137    chr1.53112509.53113047           LTR78        LTR            LTR
7138    chr1.53112509.53113047           LTR78        LTR            LTR
7139    chr1.53115743.53116666             L2b       LINE           LINE
7140    chr1.53122295.53123405              L3       LINE           LINE
7141    chr1.53135449.53136079           MER53        DNA            DNA
7142    chr1.53135449.53136079            MIR3       SINE           SINE
7143    chr1.53145758.53146866 Helitron3Na_Mam      Other             RC
7144    chr1.53145758.53146866             L2b       LINE           LINE
7145    chr1.53145758.53146866            MER3        DNA            DNA
7146    chr1.53145758.53146866           AluJb       SINE           SINE
7147    chr1.53176354.53177084            <NA>       <NA>           <NA>
7148    chr1.53182104.53182549            <NA>       <NA>           <NA>
7149    chr1.53185478.53186049          LTR13_        LTR            LTR
7150    chr1.53186547.53186774            <NA>       <NA>           <NA>
7151    chr1.53196539.53197671            MIRb       SINE           SINE
7152    chr1.53219839.53221002            L1M1       LINE           LINE
7153    chr1.53219839.53221002       (GGCCGG)n      Other  Simple_repeat
7154    chr1.53237825.53238962             L2a       LINE           LINE
7155    chr1.53237825.53238962        MIR1_Amn       SINE           SINE
7156    chr1.53249634.53250144             L2c       LINE           LINE
7157    chr1.53249634.53250144             L2c       LINE           LINE
7158    chr1.53253994.53254497             L2c       LINE           LINE
7159    chr1.53253994.53254497             L2c       LINE           LINE
7160    chr1.53256900.53257725            MIRc       SINE           SINE
7161    chr1.53256900.53257725             L2c       LINE           LINE
7162    chr1.53256900.53257725       Tigger13a        DNA            DNA
7163    chr1.53260725.53261033            <NA>       <NA>           <NA>
7164    chr1.53265653.53265886            <NA>       <NA>           <NA>
7165    chr1.53266130.53266432            <NA>       <NA>           <NA>
7166    chr1.53277319.53277744             L2b       LINE           LINE
7167    chr1.53278151.53278683            MIR3       SINE           SINE
7168    chr1.53278151.53278683       MamRep564      Other        Unknown
7169    chr1.53284590.53285058            MIR3       SINE           SINE
7170    chr1.53288117.53288621            MIRc       SINE           SINE
7171    chr1.53288117.53288621       (CTCTTT)n      Other  Simple_repeat
7172    chr1.53294420.53294992            MIRb       SINE           SINE
7173    chr1.53294420.53294992            MIR3       SINE           SINE
7174    chr1.53308440.53308931            MIRb       SINE           SINE
7175    chr1.53319331.53320036            MIRc       SINE           SINE
7176    chr1.53325943.53327856          G-rich      Other Low_complexity
7177    chr1.53325943.53327856          (GCA)n      Other  Simple_repeat
7178    chr1.53328050.53328438          (CCT)n      Other  Simple_repeat
7179    chr1.53328050.53328438             L2c       LINE           LINE
7180    chr1.53343789.53344323            MIRb       SINE           SINE
7181    chr1.53343789.53344323            MIRb       SINE           SINE
7182    chr1.53348154.53349115           (AC)n      Other  Simple_repeat
7183    chr1.53348154.53349115          MER113        DNA            DNA
7184    chr1.53348154.53349115           L1MC3       LINE           LINE
7185    chr1.53348154.53349115          G-rich      Other Low_complexity
7186    chr1.53348154.53349115           LTR33        LTR            LTR
7187    chr1.53348154.53349115            MIRc       SINE           SINE
7188    chr1.53365564.53366049           MLT1D        LTR            LTR
7189    chr1.53368692.53369499             MIR       SINE           SINE
7190    chr1.53368692.53369499            MIRc       SINE           SINE
7191    chr1.53377509.53377775            <NA>       <NA>           <NA>
7192    chr1.53380123.53380552             L2b       LINE           LINE
7193    chr1.53380123.53380552         (GATG)n      Other  Simple_repeat
7194    chr1.53393256.53394173            MIRc       SINE           SINE
7195    chr1.53393256.53394173           (GT)n      Other  Simple_repeat
7196    chr1.53410171.53410401            <NA>       <NA>           <NA>
7197    chr1.53413147.53414031             L2a       LINE           LINE
7198    chr1.53413147.53414031             L2b       LINE           LINE
7199    chr1.53438298.53439560            <NA>       <NA>           <NA>
7200    chr1.53444664.53444953           LTR13        LTR            LTR
7201    chr1.53448384.53449479          MER21C        LTR            LTR
7202    chr1.53448384.53449479            MIRb       SINE           SINE
7203    chr1.53448384.53449479            LTR7        LTR            LTR
7204    chr1.53452245.53452520            MIRb       SINE           SINE
7205    chr1.53452245.53452520             MIR       SINE           SINE
7206    chr1.53460856.53461494             L2b       LINE           LINE
7207    chr1.53462677.53463307            MIRc       SINE           SINE
7208    chr1.53470048.53470563           AluSz       SINE           SINE
7209    chr1.53470048.53470563             L2b       LINE           LINE
7210    chr1.53485372.53486221            <NA>       <NA>           <NA>
7211    chr1.53500109.53500644             L2b       LINE           LINE
7212    chr1.53503041.53503476            <NA>       <NA>           <NA>
7213    chr1.53509362.53509665        (GGGAG)n      Other  Simple_repeat
7214    chr1.53512495.53512929            <NA>       <NA>           <NA>
7215    chr1.53519491.53519869            MIRc       SINE           SINE
7216    chr1.53524777.53525262            MIR3       SINE           SINE
7217    chr1.53525636.53526182            <NA>       <NA>           <NA>
7218    chr1.53539252.53540090           (AC)n      Other  Simple_repeat
7219    chr1.53539252.53540090             L2b       LINE           LINE
7220    chr1.53549323.53549567           L1MB8       LINE           LINE
7221    chr1.53557051.53557561             MIR       SINE           SINE
7222    chr1.53572331.53573002            MIRb       SINE           SINE
7223    chr1.53572331.53573002             L2b       LINE           LINE
7224    chr1.53593965.53594405            <NA>       <NA>           <NA>
7225    chr1.53619921.53620422            MIR3       SINE           SINE
7226    chr1.53658970.53659352              L3       LINE           LINE
7227    chr1.53669515.53670167             L2b       LINE           LINE
7228    chr1.53669515.53670167             L2b       LINE           LINE
7229    chr1.53682121.53682380             L2b       LINE           LINE
7230    chr1.53685226.53685451            <NA>       <NA>           <NA>
7231    chr1.53685619.53686157             L2b       LINE           LINE
7232    chr1.53702129.53703060             MIR       SINE           SINE
7233    chr1.53702129.53703060            MIRb       SINE           SINE
7234    chr1.53715406.53715993             L2a       LINE           LINE
7235    chr1.53715406.53715993             L2a       LINE           LINE
7236    chr1.53715406.53715993             L2a       LINE           LINE
7237    chr1.53725166.53725675             L2b       LINE           LINE
7238    chr1.53738396.53739620    (GCAGCCGCC)n      Other  Simple_repeat
7239    chr1.53754669.53754967            <NA>       <NA>           <NA>
7240    chr1.53837707.53838740            <NA>       <NA>           <NA>
7241    chr1.53860814.53861382            <NA>       <NA>           <NA>
7242    chr1.53889381.53890266            MIRb       SINE           SINE
7243    chr1.53898940.53899467            MIR3       SINE           SINE
7244    chr1.53898940.53899467           (CA)n      Other  Simple_repeat
7245    chr1.53909975.53910382            <NA>       <NA>           <NA>
7246    chr1.53913422.53913944           MLT1B        LTR            LTR
7247    chr1.53919349.53919634           MLT1H        LTR            LTR
7248    chr1.53945392.53946598        (GCCCC)n      Other  Simple_repeat
7249    chr1.53957001.53957688            <NA>       <NA>           <NA>
7250    chr1.53964023.53964402            <NA>       <NA>           <NA>
7251    chr1.53982285.53982956           MLT1A        LTR            LTR
7252    chr1.53982285.53982956           L1MEc       LINE           LINE
7253    chr1.53984762.53984987           L1MB8       LINE           LINE
7254    chr1.53991946.53992683          MER52A        LTR            LTR
7255    chr1.54018088.54018361            MIRb       SINE           SINE
7256    chr1.54028154.54028738             L2b       LINE           LINE
7257    chr1.54037573.54037963            <NA>       <NA>           <NA>
7258    chr1.54052202.54053986             L2c       LINE           LINE
7259    chr1.54069710.54070355             L2c       LINE           LINE
7260    chr1.54069710.54070355       (GTATAT)n      Other  Simple_repeat
7261    chr1.54078841.54079072              L2       LINE           LINE
7262    chr1.54081432.54082086           AluJo       SINE           SINE
7263    chr1.54081432.54082086          (TTA)n      Other  Simple_repeat
7264    chr1.54081432.54082086             MIR       SINE           SINE
7265    chr1.54109659.54109980             L2c       LINE           LINE
7266    chr1.54118681.54119096              L2       LINE           LINE
7267    chr1.54121436.54122076           (CA)n      Other  Simple_repeat
7268    chr1.54135543.54135782            <NA>       <NA>           <NA>
7269    chr1.54137615.54138014           (TG)n      Other  Simple_repeat
7270    chr1.54153723.54154193             L2b       LINE           LINE
7271    chr1.54153723.54154193             L2b       LINE           LINE
7272    chr1.54153723.54154193            MIRb       SINE           SINE
7273    chr1.54160317.54160944            MIRb       SINE           SINE
7274    chr1.54167830.54168185            <NA>       <NA>           <NA>
7275    chr1.54181637.54182064           AluJb       SINE           SINE
7276    chr1.54199588.54201049             L2a       LINE           LINE
7277    chr1.54199588.54201049            MIRb       SINE           SINE
7278    chr1.54199588.54201049            MIRb       SINE           SINE
7279    chr1.54199588.54201049            MIR3       SINE           SINE
7280    chr1.54207645.54208224            <NA>       <NA>           <NA>
7281    chr1.54212382.54213182            MIRb       SINE           SINE
7282    chr1.54219980.54220798          L1MC5a       LINE           LINE
7283    chr1.54219980.54220798            MIRc       SINE           SINE
7284    chr1.54227314.54227666           AluJb       SINE           SINE
7285    chr1.54228828.54229855             MIR       SINE           SINE
7286    chr1.54246196.54246940              L3       LINE           LINE
7287    chr1.54246196.54246940            MIR3       SINE           SINE
7288    chr1.54249890.54250126             MIR       SINE           SINE
7289    chr1.54253536.54253897            <NA>       <NA>           <NA>
7290    chr1.54272982.54273469            <NA>       <NA>           <NA>
7291    chr1.54273532.54274090            MIR3       SINE           SINE
7292    chr1.54276718.54276979             L2c       LINE           LINE
7293    chr1.54276718.54276979             L2c       LINE           LINE
7294    chr1.54279052.54279636            <NA>       <NA>           <NA>
7295    chr1.54287309.54288195              L3       LINE           LINE
7296    chr1.54298541.54298825            <NA>       <NA>           <NA>
7297    chr1.54299923.54300199            <NA>       <NA>           <NA>
7298    chr1.54304684.54305117          (ACC)n      Other  Simple_repeat
7299    chr1.54306020.54306539            <NA>       <NA>           <NA>
7300    chr1.54311089.54311558            MIRc       SINE           SINE
7301    chr1.54312704.54313190            (T)n      Other  Simple_repeat
7302    chr1.54324067.54324598            MIRb       SINE           SINE
7303    chr1.54327644.54328536            MIR3       SINE           SINE
7304    chr1.54335746.54336049            MIR3       SINE           SINE
7305    chr1.54336892.54337097            <NA>       <NA>           <NA>
7306    chr1.54340423.54341071            MIRb       SINE           SINE
7307    chr1.54342424.54342938            MIRc       SINE           SINE
7308    chr1.54352616.54353021            <NA>       <NA>           <NA>
7309    chr1.54353688.54354185            MIR3       SINE           SINE
7310    chr1.54354881.54355205             L2a       LINE           LINE
7311    chr1.54355822.54356211            <NA>       <NA>           <NA>
7312    chr1.54366051.54366330             MIR       SINE           SINE
7313    chr1.54366051.54366330            MIRb       SINE           SINE
7314    chr1.54375357.54376041         (TGCA)n      Other  Simple_repeat
7315    chr1.54376831.54377724            MIRc       SINE           SINE
7316    chr1.54376831.54377724        Kanga2_a        DNA            DNA
7317    chr1.54378561.54378815            <NA>       <NA>           <NA>
7318    chr1.54384666.54385830             L2c       LINE           LINE
7319    chr1.54384666.54385830            MIRb       SINE           SINE
7320    chr1.54396972.54397684            <NA>       <NA>           <NA>
7321    chr1.54402957.54403209            <NA>       <NA>           <NA>
7322    chr1.54404914.54405549            <NA>       <NA>           <NA>
7323    chr1.54406078.54407072         (CCCT)n      Other  Simple_repeat
7324    chr1.54406078.54407072         (CCGC)n      Other  Simple_repeat
7325    chr1.54406078.54407072          (CCG)n      Other  Simple_repeat
7326    chr1.54406078.54407072       (CCGACC)n      Other  Simple_repeat
7327    chr1.54407298.54408096            (T)n      Other  Simple_repeat
7328    chr1.54408272.54408572            <NA>       <NA>           <NA>
7329    chr1.54429042.54429645           MLT1L        LTR            LTR
7330    chr1.54429042.54429645             L2b       LINE           LINE
7331    chr1.54429042.54429645           AluJb       SINE           SINE
7332    chr1.54459771.54460284         (GGGA)n      Other  Simple_repeat
7333    chr1.54463416.54463884            MIR3       SINE           SINE
7334    chr1.54463416.54463884          G-rich      Other Low_complexity
7335    chr1.54464620.54465047        (TCCTT)n      Other  Simple_repeat
7336    chr1.54465325.54465781            MIRb       SINE           SINE
7337    chr1.54471430.54472125            MIRb       SINE           SINE
7338    chr1.54474726.54475427            MIR3       SINE           SINE
7339    chr1.54474726.54475427            MIR3       SINE           SINE
7340    chr1.54475657.54476176             MIR       SINE           SINE
7341    chr1.54488032.54488600            <NA>       <NA>           <NA>
7342    chr1.54488889.54489785            (A)n      Other  Simple_repeat
7343    chr1.54488889.54489785          A-rich      Other Low_complexity
7344    chr1.54490625.54491033          (GCT)n      Other  Simple_repeat
7345    chr1.54499467.54500259            MIRb       SINE           SINE
7346    chr1.54506502.54506881             L2c       LINE           LINE
7347    chr1.54516106.54516945           AluJb       SINE           SINE
7348    chr1.54541918.54543067             L2b       LINE           LINE
7349    chr1.54544180.54544431             L2b       LINE           LINE
7350    chr1.54547527.54548993            <NA>       <NA>           <NA>
7351    chr1.54549639.54549826             L2b       LINE           LINE
7352    chr1.54558029.54558917             L2a       LINE           LINE
7353    chr1.54558029.54558917             MIR       SINE           SINE
7354    chr1.54558029.54558917             L2a       LINE           LINE
7355    chr1.54559789.54560173             L2b       LINE           LINE
7356    chr1.54562933.54563814           SVA_F Retroposon     Retroposon
7357    chr1.54562933.54563814          AluJr4       SINE           SINE
7358    chr1.54562933.54563814            MIRb       SINE           SINE
7359    chr1.54562933.54563814             L2c       LINE           LINE
7360    chr1.54562933.54563814           AluJb       SINE           SINE
7361    chr1.54562933.54563814           AluSz       SINE           SINE
7362    chr1.54569432.54569622            <NA>       <NA>           <NA>
7363    chr1.54575178.54575809             L2b       LINE           LINE
7364    chr1.54577693.54578381           L1MB5       LINE           LINE
7365    chr1.54581564.54582099            <NA>       <NA>           <NA>
7366    chr1.54585422.54586041             L2b       LINE           LINE
7367    chr1.54585422.54586041             L2a       LINE           LINE
7368    chr1.54601058.54601688           (GT)n      Other  Simple_repeat
7369    chr1.54601058.54601688            MIRb       SINE           SINE
7370    chr1.54610139.54610292            <NA>       <NA>           <NA>
7371    chr1.54621699.54622028             L2c       LINE           LINE
7372    chr1.54621699.54622028           AluSx       SINE           SINE
7373    chr1.54623441.54623832            MIR3       SINE           SINE
7374    chr1.54636425.54637230         LTR5_Hs        LTR            LTR
7375    chr1.54636425.54637230          MER9a1        LTR            LTR
7376    chr1.54652844.54653512             L2a       LINE           LINE
7377    chr1.54671897.54672449            <NA>       <NA>           <NA>
7378    chr1.54678749.54679560            <NA>       <NA>           <NA>
7379    chr1.54715274.54716543             L2b       LINE           LINE
7380    chr1.54715274.54716543            MIRb       SINE           SINE
7381    chr1.54715274.54716543            MIR3       SINE           SINE
7382    chr1.54742359.54742623           MLT1I        LTR            LTR
7383    chr1.54755573.54755843           MER5B        DNA            DNA
7384    chr1.54755573.54755843           AluSp       SINE           SINE
7385    chr1.54763968.54765074            MIRc       SINE           SINE
7386    chr1.54763968.54765074            MIR3       SINE           SINE
7387    chr1.54763968.54765074            MIRc       SINE           SINE
7388    chr1.54763968.54765074             L2a       LINE           LINE
7389    chr1.54772173.54772428            AluY       SINE           SINE
7390    chr1.54772173.54772428          MER58B        DNA            DNA
7391    chr1.54772173.54772428           AluJo       SINE           SINE
7392    chr1.54775216.54775422           MLT1K        LTR            LTR
7393    chr1.54781191.54781799            <NA>       <NA>           <NA>
7394    chr1.54794608.54795523            MIRb       SINE           SINE
7395    chr1.54794608.54795523            MIRc       SINE           SINE
7396    chr1.54799239.54799664            MIR3       SINE           SINE
7397    chr1.54803859.54804090            MIRb       SINE           SINE
7398    chr1.54810355.54810914            MIRb       SINE           SINE
7399    chr1.54854446.54854749            MIRb       SINE           SINE
7400    chr1.54854446.54854749            MIRc       SINE           SINE
7401    chr1.54857871.54858201          LTR16A        LTR            LTR
7402    chr1.54859795.54860377            MIRb       SINE           SINE
7403    chr1.54859795.54860377             L2a       LINE           LINE
7404    chr1.54861047.54861181             L2a       LINE           LINE
7405    chr1.54861410.54861737             L2a       LINE           LINE
7406    chr1.54885932.54888024            MIRb       SINE           SINE
7407    chr1.54885932.54888024             L2a       LINE           LINE
7408    chr1.54904446.54905053            <NA>       <NA>           <NA>
7409    chr1.54906086.54906335          MER4A1        LTR            LTR
7410    chr1.54922789.54923158            <NA>       <NA>           <NA>
7411    chr1.54927142.54928258           (AC)n      Other  Simple_repeat
7412    chr1.54927142.54928258            MIRb       SINE           SINE
7413    chr1.54927142.54928258             L2b       LINE           LINE
7414    chr1.54927142.54928258             L2c       LINE           LINE
7415    chr1.54927142.54928258           AluJb       SINE           SINE
7416    chr1.54934798.54935503          AluSz6       SINE           SINE
7417    chr1.54934798.54935503      PRIMAX-int        LTR            LTR
7418    chr1.54934798.54935503          FLAM_C       SINE           SINE
7419    chr1.54934798.54935503 ERV24B_Prim-int        LTR            LTR
7420    chr1.54944890.54945812             L2b       LINE           LINE
7421    chr1.54944890.54945812        MIR1_Amn       SINE           SINE
7422    chr1.54944890.54945812         (ATTC)n      Other  Simple_repeat
7423    chr1.54950226.54951027              L2       LINE           LINE
7424    chr1.54950226.54951027             L2b       LINE           LINE
7425    chr1.54950226.54951027       MamRep564      Other        Unknown
7426    chr1.54955444.54955728           MER20        DNA            DNA
7427    chr1.54955444.54955728          MER51B        LTR            LTR
7428    chr1.54965640.54966330          LTR67B        LTR            LTR
7429    chr1.54965640.54966330          LTR67B        LTR            LTR
7430    chr1.54965640.54966330           MLT1L        LTR            LTR
7431    chr1.54971400.54971755            <NA>       <NA>           <NA>
7432    chr1.54973213.54973680            MIR3       SINE           SINE
7433    chr1.54980387.54981082        MIR1_Amn       SINE           SINE
7434    chr1.54990231.54990720            <NA>       <NA>           <NA>
7435    chr1.54996360.54997424            (T)n      Other  Simple_repeat
7436    chr1.55007608.55008017            MIRb       SINE           SINE
7437    chr1.55007608.55008017        MIR1_Amn       SINE           SINE
7438    chr1.55007608.55008017             MIR       SINE           SINE
7439    chr1.55021860.55022524          G-rich      Other Low_complexity
7440    chr1.55021860.55022524             L2a       LINE           LINE
7441    chr1.55026750.55027343       HERVH-int        LTR            LTR
7442    chr1.55026750.55027343       HERVH-int        LTR            LTR
7443    chr1.55039222.55040233          (GCT)n      Other  Simple_repeat
7444    chr1.55039222.55040233            MIR3       SINE           SINE
7445    chr1.55049843.55050670             L2b       LINE           LINE
7446    chr1.55062032.55062434             L2a       LINE           LINE
7447    chr1.55064211.55064617            MIRb       SINE           SINE
7448    chr1.55064947.55065247            <NA>       <NA>           <NA>
7449    chr1.55070948.55071956            MIRb       SINE           SINE
7450    chr1.55070948.55071956             L2a       LINE           LINE
7451    chr1.55081047.55081825            MIRc       SINE           SINE
7452    chr1.55089731.55090014            <NA>       <NA>           <NA>
7453    chr1.55091126.55091668           MER1B        DNA            DNA
7454    chr1.55123313.55123571            <NA>       <NA>           <NA>
7455    chr1.55127839.55128321            <NA>       <NA>           <NA>
7456    chr1.55140621.55140817            <NA>       <NA>           <NA>
7457    chr1.55143802.55143969            <NA>       <NA>           <NA>
7458    chr1.55170187.55170755             L2a       LINE           LINE
7459    chr1.55170187.55170755            MIRb       SINE           SINE
7460    chr1.55170187.55170755             MIR       SINE           SINE
7461    chr1.55170187.55170755             L2c       LINE           LINE
7462    chr1.55179027.55179510             L2a       LINE           LINE
7463    chr1.55214269.55215998        (CGCGC)n      Other  Simple_repeat
7464    chr1.55214269.55215998        (GGCGC)n      Other  Simple_repeat
7465    chr1.55214269.55215998          (CCT)n      Other  Simple_repeat
7466    chr1.55230631.55231225          (AAT)n      Other  Simple_repeat
7467    chr1.55250533.55251010          MLT1N2        LTR            LTR
7468    chr1.55275460.55276194        Charlie9        DNA            DNA
7469    chr1.55275460.55276194          MER112        DNA            DNA
7470    chr1.55275460.55276194         MER103C        DNA            DNA
7471    chr1.55277288.55277968           MER5B        DNA            DNA
7472    chr1.55277288.55277968            MIRc       SINE           SINE
7473    chr1.55277288.55277968           (GT)n      Other  Simple_repeat
7474    chr1.55303002.55303461           LTR33        LTR            LTR
7475    chr1.55305852.55306052           MLT1L        LTR            LTR
7476    chr1.55310512.55311512            MIRb       SINE           SINE
7477    chr1.55310512.55311512             L2c       LINE           LINE
7478    chr1.55310512.55311512            MIRb       SINE           SINE
7479    chr1.55310512.55311512             L2c       LINE           LINE
7480    chr1.55317774.55318623             MIR       SINE           SINE
7481    chr1.55317774.55318623             L2c       LINE           LINE
7482    chr1.55317774.55318623            MIRc       SINE           SINE
7483    chr1.55328991.55329310            MIRb       SINE           SINE
7484    chr1.55337942.55338388          LTR41C        LTR            LTR
7485    chr1.55378495.55378852            <NA>       <NA>           <NA>
7486    chr1.55402039.55402377             L2c       LINE           LINE
7487    chr1.55420874.55421662             L2c       LINE           LINE
7488    chr1.55420874.55421662          MER39B        LTR            LTR
7489    chr1.55420874.55421662            MIRb       SINE           SINE
7490    chr1.55428695.55429710             L2b       LINE           LINE
7491    chr1.55428695.55429710            MIRc       SINE           SINE
7492    chr1.55428695.55429710            MIRc       SINE           SINE
7493    chr1.55443439.55443881    CR1-L3A_Croc       LINE           LINE
7494    chr1.55484236.55484713            MIRb       SINE           SINE
7495    chr1.55484236.55484713             L2c       LINE           LINE
7496    chr1.55518828.55519406        L2-3_Crp       LINE           LINE
7497    chr1.55518828.55519406             L2a       LINE           LINE
7498    chr1.55518828.55519406            MIRb       SINE           SINE
7499    chr1.55572900.55573606             L2c       LINE           LINE
7500    chr1.55572900.55573606             L2a       LINE           LINE
7501    chr1.55580849.55581386             L2b       LINE           LINE
7502    chr1.55580849.55581386            MIRc       SINE           SINE
7503    chr1.55591888.55592644          LTR16A        LTR            LTR
7504    chr1.55632144.55632575        Kanga11a        DNA            DNA
7505    chr1.55632144.55632575             L2c       LINE           LINE
7506    chr1.55636661.55637000            MIRc       SINE           SINE
7507    chr1.55636661.55637000             L2c       LINE           LINE
7508    chr1.55669316.55669969            MIRc       SINE           SINE
7509    chr1.55669316.55669969          MLT1J1        LTR            LTR
7510    chr1.55673383.55673795           LTR33        LTR            LTR
7511    chr1.55694110.55694958          LTR16A        LTR            LTR
7512    chr1.55694110.55694958            MIRb       SINE           SINE
7513    chr1.55695655.55695819            MIRb       SINE           SINE
7514    chr1.55696274.55696959            MIRb       SINE           SINE
7515    chr1.55702033.55702349             L2c       LINE           LINE
7516    chr1.55718564.55719500             L2c       LINE           LINE
7517    chr1.55718564.55719500             L2c       LINE           LINE
7518    chr1.55726862.55727461          LTR33A        LTR            LTR
7519    chr1.55750120.55750789            <NA>       <NA>           <NA>
7520    chr1.55767190.55767577           MLT1I        LTR            LTR
7521    chr1.55781755.55782410        ERVL-int        LTR            LTR
7522    chr1.55818890.55819469         LTR16E2        LTR            LTR
7523    chr1.55818890.55819469             MIR       SINE           SINE
7524    chr1.55818890.55819469          AluSq2       SINE           SINE
7525    chr1.55827205.55827763           AluJb       SINE           SINE
7526    chr1.55860724.55861156            <NA>       <NA>           <NA>
7527    chr1.55868987.55869568          MER20B        DNA            DNA
7528    chr1.55868987.55869568          MER20B        DNA            DNA
7529    chr1.55868987.55869568            MIRb       SINE           SINE
7530    chr1.55893125.55893587          L1PA14       LINE           LINE
7531    chr1.55893125.55893587         L1PREC2       LINE           LINE
7532    chr1.55893125.55893587           AluJo       SINE           SINE
7533    chr1.55938529.55939099            <NA>       <NA>           <NA>
7534    chr1.55955250.55955533             L2a       LINE           LINE
7535    chr1.56064391.56065477          (AAC)n      Other  Simple_repeat
7536    chr1.56064391.56065477      LTR107_Mam        LTR            LTR
7537    chr1.56065523.56066244      LTR107_Mam        LTR            LTR
7538    chr1.56065523.56066244           L1MCa       LINE           LINE
7539    chr1.56065523.56066244         (GTTT)n      Other  Simple_repeat
7540    chr1.56132520.56132874             L2c       LINE           LINE
7541    chr1.56170937.56171418          LTR33A        LTR            LTR
7542    chr1.56170937.56171418          LTR33A        LTR            LTR
7543    chr1.56170937.56171418      ERVL-E-int        LTR            LTR
7544    chr1.56174285.56174721           L1MEc       LINE           LINE
7545    chr1.56199013.56199511            MIRc       SINE           SINE
7546    chr1.56199013.56199511             L2c       LINE           LINE
7547    chr1.56200398.56200806            <NA>       <NA>           <NA>
7548    chr1.56236198.56236445            <NA>       <NA>           <NA>
7549    chr1.56259074.56259699            MIRb       SINE           SINE
7550    chr1.56259074.56259699            MIRb       SINE           SINE
7551    chr1.56301887.56302321          L1ME4a       LINE           LINE
7552    chr1.56301887.56302321         Plat_L3       LINE           LINE
7553    chr1.56304926.56305305           L1PB1       LINE           LINE
7554    chr1.56304926.56305305        MIR1_Amn       SINE           SINE
7555    chr1.56328842.56329202            <NA>       <NA>           <NA>
7556    chr1.56331938.56332518            <NA>       <NA>           <NA>
7557    chr1.56355338.56356406            MIRb       SINE           SINE
7558    chr1.56355338.56356406             L2c       LINE           LINE
7559    chr1.56355338.56356406             L2b       LINE           LINE
7560    chr1.56374492.56375365            MIRb       SINE           SINE
7561    chr1.56374492.56375365            (A)n      Other  Simple_repeat
7562    chr1.56376343.56376898            MIRb       SINE           SINE
7563    chr1.56376343.56376898            MIRb       SINE           SINE
7564    chr1.56396600.56396826       MamRep605      Other           LTR?
7565    chr1.56399312.56399770            <NA>       <NA>           <NA>
7566    chr1.56425025.56425718            MIR3       SINE           SINE
7567    chr1.56430473.56430805           AluJr       SINE           SINE
7568    chr1.56434046.56434307             L2c       LINE           LINE
7569    chr1.56434046.56434307           MER5A        DNA            DNA
7570    chr1.56436908.56437581             L2c       LINE           LINE
7571    chr1.56438031.56438234             L2a       LINE           LINE
7572    chr1.56439598.56440020            <NA>       <NA>           <NA>
7573    chr1.56446705.56447114            <NA>       <NA>           <NA>
7574    chr1.56453465.56454006        X7C_LINE       LINE           LINE
7575    chr1.56453465.56454006           MLT1K        LTR            LTR
7576    chr1.56453465.56454006          L1ME3E       LINE           LINE
7577    chr1.56456513.56457086            MIRb       SINE           SINE
7578    chr1.56456513.56457086            MIRb       SINE           SINE
7579    chr1.56477146.56478049            MIRb       SINE           SINE
7580    chr1.56494325.56494704            <NA>       <NA>           <NA>
7581    chr1.56502682.56502956             L2c       LINE           LINE
7582    chr1.56505915.56506448            MIR3       SINE           SINE
7583    chr1.56508399.56509022            <NA>       <NA>           <NA>
7584    chr1.56516801.56517219          UCON35      Other        Unknown
7585    chr1.56521199.56521723          AluSz6       SINE           SINE
7586    chr1.56521199.56521723           (TG)n      Other  Simple_repeat
7587    chr1.56521199.56521723          FLAM_C       SINE           SINE
7588    chr1.56521199.56521723         (CTCC)n      Other  Simple_repeat
7589    chr1.56535675.56536204            MIRc       SINE           SINE
7590    chr1.56565749.56566406            MIRb       SINE           SINE
7591    chr1.56565749.56566406             MIR       SINE           SINE
7592    chr1.56578302.56579698             L2c       LINE           LINE
7593    chr1.56578302.56579698        (CGGCG)n      Other  Simple_repeat
7594    chr1.56578302.56579698    (CCTCCTGCT)n      Other  Simple_repeat
7595    chr1.56578302.56579698          (TGC)n      Other  Simple_repeat
7596    chr1.56637801.56638042             L2a       LINE           LINE
7597    chr1.56644675.56646378          (GGC)n      Other  Simple_repeat
7598    chr1.56644675.56646378          G-rich      Other Low_complexity
7599    chr1.56644675.56646378            MIR3       SINE           SINE
7600    chr1.56644675.56646378            MIRb       SINE           SINE
7601    chr1.56654496.56655045            <NA>       <NA>           <NA>
7602    chr1.56655356.56655789          FLAM_C       SINE           SINE
7603    chr1.56655356.56655789         (ATTT)n      Other  Simple_repeat
7604    chr1.56655356.56655789           MSTB1        LTR            LTR
7605    chr1.56666112.56666533             L2c       LINE           LINE
7606    chr1.56676450.56677357           MLT1D        LTR            LTR
7607    chr1.56676450.56677357      Charlie29a        DNA            DNA
7608    chr1.56676450.56677357      Charlie29a        DNA            DNA
7609    chr1.56684800.56685344             L2a       LINE           LINE
7610    chr1.56684800.56685344             L2a       LINE           LINE
7611    chr1.56684800.56685344              L2       LINE           LINE
7612    chr1.56684800.56685344             L2a       LINE           LINE
7613    chr1.56688435.56689198             L2c       LINE           LINE
7614    chr1.56688435.56689198             L2c       LINE           LINE
7615    chr1.56709270.56709890            <NA>       <NA>           <NA>
7616    chr1.56710697.56711161      (GACTCAT)n      Other  Simple_repeat
7617    chr1.56758208.56758528             MIR       SINE           SINE
7618    chr1.56788415.56788934            <NA>       <NA>           <NA>
7619    chr1.56797227.56797678             L2c       LINE           LINE
7620    chr1.56797227.56797678          LTR67B        LTR            LTR
7621    chr1.56797916.56798833             L2a       LINE           LINE
7622    chr1.56797916.56798833             L2c       LINE           LINE
7623    chr1.56797916.56798833          (AAT)n      Other  Simple_repeat
7624    chr1.56797916.56798833             MIR       SINE           SINE
7625    chr1.56799793.56800527        (AATAA)n      Other  Simple_repeat
7626    chr1.56803683.56803977           MER5B        DNA            DNA
7627    chr1.56810976.56811729             L2c       LINE           LINE
7628    chr1.56810976.56811729             MIR       SINE           SINE
7629    chr1.56810976.56811729          LTR38B        LTR            LTR
7630    chr1.56810976.56811729           MLT1B        LTR            LTR
7631    chr1.56818642.56819724            MIRb       SINE           SINE
7632    chr1.56820822.56821662          MER112        DNA            DNA
7633    chr1.56820822.56821662            MIR3       SINE           SINE
7634    chr1.56831947.56832820            (A)n      Other  Simple_repeat
7635    chr1.56831947.56832820           (AT)n      Other  Simple_repeat
7636    chr1.56831947.56832820         (CATA)n      Other  Simple_repeat
7637    chr1.56831947.56832820           (AG)n      Other  Simple_repeat
7638    chr1.56831947.56832820           (TG)n      Other  Simple_repeat
7639    chr1.56831947.56832820           AluJo       SINE           SINE
7640    chr1.56872566.56872941         GA-rich      Other Low_complexity
7641    chr1.56901646.56902148             L2c       LINE           LINE
7642    chr1.56901646.56902148              L3       LINE           LINE
7643    chr1.56904688.56905250            MIR3       SINE           SINE
7644    chr1.56904688.56905250            MIR3       SINE           SINE
7645    chr1.56911175.56911483            MIRb       SINE           SINE
7646    chr1.56911175.56911483            MIRc       SINE           SINE
7647    chr1.56958174.56958911             L2c       LINE           LINE
7648    chr1.56965793.56966233             MIR       SINE           SINE
7649    chr1.57007931.57008242            <NA>       <NA>           <NA>
7650    chr1.57013509.57013918            MIR3       SINE           SINE
7651    chr1.57017147.57017516            <NA>       <NA>           <NA>
7652    chr1.57026409.57027264            MIRb       SINE           SINE
7653    chr1.57026409.57027264          MER83B        LTR            LTR
7654    chr1.57059010.57059472             L2c       LINE           LINE
7655    chr1.57059010.57059472            MIRb       SINE           SINE
7656    chr1.57061375.57061872              L3       LINE           LINE
7657    chr1.57061375.57061872            MIRb       SINE           SINE
7658    chr1.57067030.57067487            MIRb       SINE           SINE
7659    chr1.57067971.57068226            MIRc       SINE           SINE
7660    chr1.57082254.57083299          L1PA10       LINE           LINE
7661    chr1.57082254.57083299            MIRb       SINE           SINE
7662    chr1.57088697.57089033          MER67A        LTR            LTR
7663    chr1.57088697.57089033             MIR       SINE           SINE
7664    chr1.57089572.57090268            MSTA        LTR            LTR
7665    chr1.57102846.57103554            MIRb       SINE           SINE
7666    chr1.57111330.57111496             L2a       LINE           LINE
7667    chr1.57112095.57112526            <NA>       <NA>           <NA>
7668    chr1.57115037.57115539            MIRb       SINE           SINE
7669    chr1.57115037.57115539            MER3        DNA            DNA
7670    chr1.57124321.57125397            MIRb       SINE           SINE
7671    chr1.57124321.57125397             L2c       LINE           LINE
7672    chr1.57128661.57128868        MIR1_Amn       SINE           SINE
7673    chr1.57131350.57131597            MIRb       SINE           SINE
7674    chr1.57131782.57132435             L2a       LINE           LINE
7675    chr1.57131782.57132435             L2a       LINE           LINE
7676    chr1.57131782.57132435             L2c       LINE           LINE
7677    chr1.57133336.57133602            MIRb       SINE           SINE
7678    chr1.57162949.57164041             L2a       LINE           LINE
7679    chr1.57162949.57164041            MIR3       SINE           SINE
7680    chr1.57174016.57174492             L2c       LINE           LINE
7681    chr1.57206045.57206535         GA-rich      Other Low_complexity
7682    chr1.57206045.57206535            MIR3       SINE           SINE
7683    chr1.57217854.57218284             L2b       LINE           LINE
7684    chr1.57218669.57219177           AluJb       SINE           SINE
7685    chr1.57218669.57219177      Charlie18a        DNA            DNA
7686    chr1.57238005.57238816           MER5A        DNA            DNA
7687    chr1.57252993.57253326            <NA>       <NA>           <NA>
7688    chr1.57254078.57254325            <NA>       <NA>           <NA>
7689    chr1.57280151.57280671            MIRb       SINE           SINE
7690    chr1.57299953.57300615             L2b       LINE           LINE
7691    chr1.57299953.57300615             L2a       LINE           LINE
7692    chr1.57319138.57319518           UCON8        DNA            DNA
7693    chr1.57340638.57341055            MIRb       SINE           SINE
7694    chr1.57340638.57341055            MIRc       SINE           SINE
7695    chr1.57362393.57362793          MLT1A0        LTR            LTR
7696    chr1.57377700.57378038           LTR33        LTR            LTR
7697    chr1.57411282.57411778            MIRc       SINE           SINE
7698    chr1.57422237.57424130            <NA>       <NA>           <NA>
7699    chr1.57424253.57425003         (CGAG)n      Other  Simple_repeat
7700    chr1.57431485.57431851           AluSg       SINE           SINE
7701    chr1.57485540.57486008            MIRb       SINE           SINE
7702    chr1.57485540.57486008             L2c       LINE           LINE
7703    chr1.57489365.57490064          MLT1A0        LTR            LTR
7704    chr1.57494680.57495229             L3b       LINE           LINE
7705    chr1.57522392.57523518            HAL1       LINE           LINE
7706    chr1.57522392.57523518           THE1B        LTR            LTR
7707    chr1.57522392.57523518       HERVL-int        LTR            LTR
7708    chr1.57522392.57523518          MLT2A2        LTR            LTR
7709    chr1.57522392.57523518            HAL1       LINE           LINE
7710    chr1.57550194.57550398            MIRb       SINE           SINE
7711    chr1.57550194.57550398              L3       LINE           LINE
7712    chr1.57590795.57591310            L1M5       LINE           LINE
7713    chr1.57590795.57591310            MIRb       SINE           SINE
7714    chr1.57598948.57600072            MIRb       SINE           SINE
7715    chr1.57598948.57600072             L2b       LINE           LINE
7716    chr1.57611849.57612274             L2a       LINE           LINE
7717    chr1.57611849.57612274           (TG)n      Other  Simple_repeat
7718    chr1.57611849.57612274             L2a       LINE           LINE
7719    chr1.57611849.57612274           MLT1D        LTR            LTR
7720    chr1.57616840.57617344            MIR3       SINE           SINE
7721    chr1.57616840.57617344         LTR16A1        LTR            LTR
7722    chr1.57622841.57624014            MIRb       SINE           SINE
7723    chr1.57632193.57633363            HAL1       LINE           LINE
7724    chr1.57632193.57633363           MER5A        DNA            DNA
7725    chr1.57637216.57637604             L2c       LINE           LINE
7726    chr1.57638375.57638660            <NA>       <NA>           <NA>
7727    chr1.57711252.57711783           LTR8A        LTR            LTR
7728    chr1.57711252.57711783    HUERS-P1-int        LTR            LTR
7729    chr1.57711252.57711783       LTR49-int        LTR            LTR
7730    chr1.57722108.57722982          MER117        DNA            DNA
7731    chr1.57722108.57722982              L2       LINE           LINE
7732    chr1.57761617.57762180            <NA>       <NA>           <NA>
7733    chr1.57796594.57796956            <NA>       <NA>           <NA>
7734    chr1.57824641.57825053            MIR3       SINE           SINE
7735    chr1.57831585.57832130           AluJb       SINE           SINE
7736    chr1.57831585.57832130             L2b       LINE           LINE
7737    chr1.57844979.57845335           LTR33        LTR            LTR
7738    chr1.57848486.57848688            L1M6       LINE           LINE
7739    chr1.57966921.57967479            L1M3       LINE           LINE
7740    chr1.57966921.57967479           L1MB1       LINE           LINE
7741    chr1.58041465.58042167             MIR       SINE           SINE
7742    chr1.58041465.58042167          MER117        DNA            DNA
7743    chr1.58047195.58047522           MER33        DNA            DNA
7744    chr1.58047195.58047522           MER33        DNA            DNA
7745    chr1.58059012.58059298            MIRb       SINE           SINE
7746    chr1.58065609.58066002          LTR16A        LTR            LTR
7747    chr1.58067020.58067432             L2c       LINE           LINE
7748    chr1.58067020.58067432            MIRb       SINE           SINE
7749    chr1.58075076.58075884           MLT1O        LTR            LTR
7750    chr1.58075076.58075884           MLT1I        LTR            LTR
7751    chr1.58075076.58075884           MLT1O        LTR            LTR
7752    chr1.58084375.58084620            MIRb       SINE           SINE
7753    chr1.58162732.58163743           MER20        DNA            DNA
7754    chr1.58162732.58163743           LTR50        LTR            LTR
7755    chr1.58162732.58163743          L1M4a2       LINE           LINE
7756    chr1.58206730.58207074           MLT1H        LTR            LTR
7757    chr1.58244825.58245254            MIRb       SINE           SINE
7758    chr1.58249848.58250702       (GCAGCA)n      Other  Simple_repeat
7759    chr1.58282635.58283133            <NA>       <NA>           <NA>
7760    chr1.58290602.58291084            MIRb       SINE           SINE
7761    chr1.58356130.58356700          LTR78B        LTR            LTR
7762    chr1.58356130.58356700         (ACAT)n      Other  Simple_repeat
7763    chr1.58356130.58356700             L2c       LINE           LINE
7764    chr1.58395166.58395863            MIR3       SINE           SINE
7765    chr1.58395166.58395863             L2b       LINE           LINE
7766    chr1.58397235.58397753            <NA>       <NA>           <NA>
7767    chr1.58411977.58412675           MLT1K        LTR            LTR
7768    chr1.58421634.58421914              L3       LINE           LINE
7769    chr1.58421634.58421914      CR1-3_Croc       LINE           LINE
7770    chr1.58421634.58421914            MIRb       SINE           SINE
7771    chr1.58432688.58433206            <NA>       <NA>           <NA>
7772    chr1.58457120.58457493            MIR3       SINE           SINE
7773    chr1.58460482.58460735        Charlie7        DNA            DNA
7774    chr1.58466735.58467339             L2c       LINE           LINE
7775    chr1.58466735.58467339            MIRb       SINE           SINE
7776    chr1.58468837.58469336         LTR16B1        LTR            LTR
7777    chr1.58468837.58469336            MIRb       SINE           SINE
7778    chr1.58470560.58470965              L3       LINE           LINE
7779    chr1.58470560.58470965              L3       LINE           LINE
7780    chr1.58470560.58470965            MIRc       SINE           SINE
7781    chr1.58477450.58477754           MLT1K        LTR            LTR
7782    chr1.58477450.58477754           MLT1K        LTR            LTR
7783    chr1.58482959.58483446          MER115        DNA            DNA
7784    chr1.58482959.58483446          MER115        DNA            DNA
7785    chr1.58508451.58509106           L1MB1       LINE           LINE
7786    chr1.58545914.58547044        (TCCCC)n      Other  Simple_repeat
7787    chr1.58576479.58577701          (CAG)n      Other  Simple_repeat
7788    chr1.58584376.58585080              L3       LINE           LINE
7789    chr1.58592214.58593021            MIRb       SINE           SINE
7790    chr1.58592214.58593021             MIR       SINE           SINE
7791    chr1.58592214.58593021         (TGCC)n      Other  Simple_repeat
7792    chr1.58618317.58618659              L2       LINE           LINE
7793    chr1.58618317.58618659           MLT1J        LTR            LTR
7794    chr1.58628989.58629420             L2b       LINE           LINE
7795    chr1.58628989.58629420             L2c       LINE           LINE
7796    chr1.58652382.58652860            MIRb       SINE           SINE
7797    chr1.58683649.58684045      Charlie16a        DNA            DNA
7798    chr1.58683649.58684045        MamSINE1       SINE           SINE
7799    chr1.58687545.58687886           LTR46        LTR            LTR
7800    chr1.58698880.58700337            MIRc       SINE           SINE
7801    chr1.58698880.58700337           MADE2        DNA            DNA
7802    chr1.58698880.58700337            MIRb       SINE           SINE
7803    chr1.58698880.58700337            MIRb       SINE           SINE
7804    chr1.58698880.58700337          AluSq2       SINE           SINE
7805    chr1.58720779.58720997             L2a       LINE           LINE
7806    chr1.58722848.58723308           MLT1A        LTR            LTR
7807    chr1.58727380.58727800         MamRTE1       LINE           LINE
7808    chr1.58741697.58742016           MER5B        DNA            DNA
7809    chr1.58745758.58746038             L2b       LINE           LINE
7810    chr1.58755271.58756018            <NA>       <NA>           <NA>
7811    chr1.58762801.58763587             L2c       LINE           LINE
7812    chr1.58762801.58763587          MER91A        DNA            DNA
7813    chr1.58762801.58763587            MIR3       SINE           SINE
7814    chr1.58764117.58764778            <NA>       <NA>           <NA>
7815    chr1.58773243.58773789           (TG)n      Other  Simple_repeat
7816    chr1.58782274.58784820          (CTG)n      Other  Simple_repeat
7817    chr1.58782274.58784820       (GCTGCC)n      Other  Simple_repeat
7818    chr1.58782274.58784820         (CTGG)n      Other  Simple_repeat
7819    chr1.58785034.58785641       (ACACGC)n      Other  Simple_repeat
7820    chr1.58785034.58785641            MIRc       SINE           SINE
7821    chr1.58789412.58789657             L2c       LINE           LINE
7822    chr1.58804934.58805144             L2a       LINE           LINE
7823    chr1.58809276.58809592            MIRb       SINE           SINE
7824    chr1.58815148.58815932            MIRb       SINE           SINE
7825    chr1.58816118.58816913      (CAGTCCT)n      Other  Simple_repeat
7826    chr1.58816118.58816913          L1PA16       LINE           LINE
7827    chr1.58823486.58823960            MIRb       SINE           SINE
7828    chr1.58832973.58833152             L2c       LINE           LINE
7829    chr1.58848759.58849541            <NA>       <NA>           <NA>
7830    chr1.58858181.58858856             L2c       LINE           LINE
7831    chr1.58858181.58858856             L2c       LINE           LINE
7832    chr1.58873574.58873936             L2a       LINE           LINE
7833    chr1.58881560.58881802            <NA>       <NA>           <NA>
7834    chr1.58883137.58883729              L3       LINE           LINE
7835    chr1.58883827.58884164              L3       LINE           LINE
7836    chr1.58883827.58884164            MIRc       SINE           SINE
7837    chr1.58883827.58884164             MIR       SINE           SINE
7838    chr1.58898891.58899583            MIRc       SINE           SINE
7839    chr1.58903506.58904249            MIRb       SINE           SINE
7840    chr1.58903506.58904249        (GGCCG)n      Other  Simple_repeat
7841    chr1.58922308.58922793        MIR1_Amn       SINE           SINE
7842    chr1.58932890.58933326            <NA>       <NA>           <NA>
7843    chr1.58971630.58972210            MIRb       SINE           SINE
7844    chr1.58971630.58972210             L2b       LINE           LINE
7845    chr1.58987087.58987485           MLT1B        LTR            LTR
7846    chr1.58987087.58987485           LTR33        LTR            LTR
7847    chr1.58987087.58987485             L2c       LINE           LINE
7848    chr1.59006296.59006666             MIR       SINE           SINE
7849    chr1.59006296.59006666             L2b       LINE           LINE
7850    chr1.59008252.59008899             MIR       SINE           SINE
7851    chr1.59015818.59016207            <NA>       <NA>           <NA>
7852    chr1.59018716.59019183             L2b       LINE           LINE
7853    chr1.59020295.59020664            <NA>       <NA>           <NA>
7854    chr1.59025222.59025631           AluJo       SINE           SINE
7855    chr1.59029809.59030194            MIRc       SINE           SINE
7856    chr1.59029809.59030194             L2c       LINE           LINE
7857    chr1.59043790.59044178            MIRb       SINE           SINE
7858    chr1.59046233.59046594             L2c       LINE           LINE
7859    chr1.59052210.59052578       (TCAAGA)n      Other  Simple_repeat
7860    chr1.59062738.59063025          MLT1F2        LTR            LTR
7861    chr1.59072391.59072827            <NA>       <NA>           <NA>
7862    chr1.59077942.59078496            MIRb       SINE           SINE
7863    chr1.59077942.59078496             MIR       SINE           SINE
7864    chr1.59077942.59078496            MIRb       SINE           SINE
7865    chr1.59084012.59084480         (CCTT)n      Other  Simple_repeat
7866    chr1.59096314.59096957             L2a       LINE           LINE
7867    chr1.59096314.59096957           L1MC4       LINE           LINE
7868    chr1.59107500.59107939            MIR3       SINE           SINE
7869    chr1.59117011.59117380          LTR85c        LTR            LTR
7870    chr1.59128284.59129251           MLT1J        LTR            LTR
7871    chr1.59128284.59129251            MIRb       SINE           SINE
7872    chr1.59128284.59129251            MIRb       SINE           SINE
7873    chr1.59139293.59139852           AluSz       SINE           SINE
7874    chr1.59143011.59143445             L2c       LINE           LINE
7875    chr1.59146844.59147302           MER5A        DNA            DNA
7876    chr1.59150668.59151617            <NA>       <NA>           <NA>
7877    chr1.59186454.59187040            MIRc       SINE           SINE
7878    chr1.59276411.59276859            MIRb       SINE           SINE
7879    chr1.59290093.59290886            MIRc       SINE           SINE
7880    chr1.59296371.59297308          (CCT)n      Other  Simple_repeat
7881    chr1.59329462.59329762    Tigger1a_Art        DNA            DNA
7882    chr1.59329462.59329762             L2b       LINE           LINE
7883    chr1.59329462.59329762            MER3        DNA            DNA
7884    chr1.59360239.59360475            MIR3       SINE           SINE
7885    chr1.59375203.59375831           AluSx       SINE           SINE
7886    chr1.59379288.59379585        Tigger3b        DNA            DNA
7887    chr1.59393130.59394036            <NA>       <NA>           <NA>
7888    chr1.59427160.59428032            MIRc       SINE           SINE
7889    chr1.59434167.59434776             L2a       LINE           LINE
7890    chr1.59434167.59434776          MLT1A0        LTR            LTR
7891    chr1.59443127.59443946            <NA>       <NA>           <NA>
7892    chr1.59445185.59445412       MamRep605      Other           LTR?
7893    chr1.59446340.59446919            <NA>       <NA>           <NA>
7894    chr1.59455042.59455512             L2c       LINE           LINE
7895    chr1.59483983.59484448             MIR       SINE           SINE
7896    chr1.59486603.59487115             L2b       LINE           LINE
7897    chr1.59486603.59487115       MamRep137        DNA            DNA
7898    chr1.59486603.59487115          MER91C        DNA            DNA
7899    chr1.59487209.59487804             L2b       LINE           LINE
7900    chr1.59498610.59499187           MER5A        DNA            DNA
7901    chr1.59499261.59499925          MER44B        DNA            DNA
7902    chr1.59499261.59499925          MER44B        DNA            DNA
7903    chr1.59499261.59499925           (AT)n      Other  Simple_repeat
7904    chr1.59553034.59553907             L2b       LINE           LINE
7905    chr1.59553034.59553907            MIRb       SINE           SINE
7906    chr1.59571343.59571570             L2c       LINE           LINE
7907    chr1.59571343.59571570          L1ME3B       LINE           LINE
7908    chr1.59595753.59596129            <NA>       <NA>           <NA>
7909    chr1.59596381.59596933            MIRc       SINE           SINE
7910    chr1.59601229.59601547             MIR       SINE           SINE
7911    chr1.59669807.59670375            <NA>       <NA>           <NA>
7912    chr1.59672025.59672210            <NA>       <NA>           <NA>
7913    chr1.59672928.59673575             L2a       LINE           LINE
7914    chr1.59678649.59679178            <NA>       <NA>           <NA>
7915    chr1.59701230.59701836             L2c       LINE           LINE
7916    chr1.59701230.59701836             L2a       LINE           LINE
7917    chr1.59701230.59701836         (TGTG)n      Other  Simple_repeat
7918    chr1.59704051.59704277            <NA>       <NA>           <NA>
7919    chr1.59707136.59707666            MIRb       SINE           SINE
7920    chr1.59730103.59731474           L1MC3       LINE           LINE
7921    chr1.59730103.59731474             L2a       LINE           LINE
7922    chr1.59730103.59731474             L2b       LINE           LINE
7923    chr1.59730103.59731474            MIRb       SINE           SINE
7924    chr1.59730103.59731474             L2c       LINE           LINE
7925    chr1.59738825.59739264            MIRb       SINE           SINE
7926    chr1.59743565.59744292            MIR3       SINE           SINE
7927    chr1.59743565.59744292             MIR       SINE           SINE
7928    chr1.59743565.59744292          AluSx1       SINE           SINE
7929    chr1.59750592.59751073            MIRb       SINE           SINE
7930    chr1.59757203.59757628            <NA>       <NA>           <NA>
7931    chr1.59759164.59759776            <NA>       <NA>           <NA>
7932    chr1.59814353.59815471           AluSx       SINE           SINE
7933    chr1.59814353.59815471            (C)n      Other  Simple_repeat
7934    chr1.59819977.59820258             MIR       SINE           SINE
7935    chr1.59856679.59857197           L1MB7       LINE           LINE
7936    chr1.59879452.59880426           MER30        DNA            DNA
7937    chr1.59879452.59880426           MLT1I        LTR            LTR
7938    chr1.59885181.59886526       Tigger14a        DNA            DNA
7939    chr1.59885181.59886526          MER31B        LTR            LTR
7940    chr1.59893068.59893299            MIRc       SINE           SINE
7941    chr1.59897257.59897571            MIRc       SINE           SINE
7942    chr1.59897257.59897571            MIR3       SINE           SINE
7943    chr1.59898201.59898452           MLT1H        LTR            LTR
7944    chr1.59898859.59899170            <NA>       <NA>           <NA>
7945    chr1.59906639.59907700           L1MB2       LINE           LINE
7946    chr1.59906639.59907700          MER112        DNA            DNA
7947    chr1.59906639.59907700             L2c       LINE           LINE
7948    chr1.59906639.59907700             L2c       LINE           LINE
7949    chr1.59914703.59915495           LTR5B        LTR            LTR
7950    chr1.59915496.59915872            <NA>       <NA>           <NA>
7951    chr1.59921111.59921787             L2c       LINE           LINE
7952    chr1.59921111.59921787          MER11D        LTR            LTR
7953    chr1.59926413.59927310        (CCCCG)n      Other  Simple_repeat
7954    chr1.59926413.59927310             L2a       LINE           LINE
7955    chr1.59926413.59927310             MIR       SINE           SINE
7956    chr1.59941047.59941608          L1MA4A       LINE           LINE
7957    chr1.59941047.59941608        Tigger3b        DNA            DNA
7958    chr1.59947045.59947815            MIR3       SINE           SINE
7959    chr1.59967086.59967755            <NA>       <NA>           <NA>
7960    chr1.59971320.59971839              L3       LINE           LINE
7961    chr1.59976695.59977048            <NA>       <NA>           <NA>
7962    chr1.59980702.59981076             L2c       LINE           LINE
7963    chr1.59986455.59987182            <NA>       <NA>           <NA>
7964    chr1.59990282.59990850            <NA>       <NA>           <NA>
7965    chr1.59994368.59994940            MIRb       SINE           SINE
7966    chr1.60068436.60068894              L3       LINE           LINE
7967    chr1.60071441.60071644            MIRb       SINE           SINE
7968    chr1.60071441.60071644          MER117        DNA            DNA
7969    chr1.60071441.60071644           MER5B        DNA            DNA
7970    chr1.60073563.60074112            <NA>       <NA>           <NA>
7971    chr1.60108034.60108500             L2c       LINE           LINE
7972    chr1.60108034.60108500          LTR81B        LTR            LTR
7973    chr1.60149271.60149630            MIRb       SINE           SINE
7974    chr1.60156882.60157204            <NA>       <NA>           <NA>
7975    chr1.60281125.60282009            MIRb       SINE           SINE
7976    chr1.60281125.60282009             MIR       SINE           SINE
7977    chr1.60281125.60282009          MER63D        DNA            DNA
7978    chr1.60283779.60284263            <NA>       <NA>           <NA>
7979    chr1.60341243.60341549             MIR       SINE           SINE
7980    chr1.60425648.60425768           L1MA9       LINE           LINE
7981    chr1.60427097.60427552          AluSq2       SINE           SINE
7982    chr1.60573151.60574294              L3       LINE           LINE
7983    chr1.60573151.60574294            MIRb       SINE           SINE
7984    chr1.60597169.60597618            MIRb       SINE           SINE
7985    chr1.60762143.60762521            MIRc       SINE           SINE
7986    chr1.60765203.60765498          MER58A        DNA            DNA
7987    chr1.60765203.60765498             MIR       SINE           SINE
7988    chr1.60809040.60809883           MER81        DNA            DNA
7989    chr1.60809040.60809883            MIRc       SINE           SINE
7990    chr1.60809040.60809883            MIRb       SINE           SINE
7991    chr1.60833257.60833502            <NA>       <NA>           <NA>
7992    chr1.60858267.60858629           (GT)n      Other  Simple_repeat
7993    chr1.60874735.60875043             L2c       LINE           LINE
7994    chr1.60886915.60887340          UCON97        DNA            DNA
7995    chr1.60923532.60924392            MIRb       SINE           SINE
7996    chr1.60923532.60924392       (TTTTCC)n      Other  Simple_repeat
7997    chr1.60924622.60925645            <NA>       <NA>           <NA>
7998    chr1.60942345.60942838           MER5A        DNA            DNA
7999    chr1.60942345.60942838             L2a       LINE           LINE
8000    chr1.60942345.60942838             L2c       LINE           LINE
8001    chr1.60943093.60943550             L2c       LINE           LINE
8002    chr1.60960893.60961532            <NA>       <NA>           <NA>
8003    chr1.60963421.60963895            <NA>       <NA>           <NA>
8004    chr1.60972644.60973036             MIR       SINE           SINE
8005    chr1.60972644.60973036            MIRc       SINE           SINE
8006    chr1.60978999.60979264             L2c       LINE           LINE
8007    chr1.60989002.60989661             MIR       SINE           SINE
8008    chr1.60989729.60990388            <NA>       <NA>           <NA>
8009    chr1.60998840.60999369            MIRb       SINE           SINE
8010    chr1.61005956.61006352            <NA>       <NA>           <NA>
8011    chr1.61011655.61012810             L2c       LINE           LINE
8012    chr1.61013290.61013762            <NA>       <NA>           <NA>
8013    chr1.61032798.61032997           AluJr       SINE           SINE
8014    chr1.61042733.61043695            <NA>       <NA>           <NA>
8015    chr1.61049791.61051209       (CCCTCT)n      Other  Simple_repeat
8016    chr1.61049791.61051209         GA-rich      Other Low_complexity
8017    chr1.61053791.61054237            <NA>       <NA>           <NA>
8018    chr1.61056819.61057373           (CA)n      Other  Simple_repeat
8019    chr1.61056819.61057373          (GCG)n      Other  Simple_repeat
8020    chr1.61057672.61057966          AluSq2       SINE           SINE
8021    chr1.61057672.61057966         (CCTC)n      Other  Simple_repeat
8022    chr1.61076735.61077419         (AGCG)n      Other  Simple_repeat
8023    chr1.61077915.61078226            <NA>       <NA>           <NA>
8024    chr1.61079976.61080121            <NA>       <NA>           <NA>
8025    chr1.61082413.61082942        (CGCGG)n      Other  Simple_repeat
8026    chr1.61082413.61082942           (TC)n      Other  Simple_repeat
8027    chr1.61082413.61082942       (CACGCA)n      Other  Simple_repeat
8028    chr1.61082413.61082942          G-rich      Other Low_complexity
8029    chr1.61082413.61082942           (GT)n      Other  Simple_repeat
8030    chr1.61083201.61083857       (GGCCCC)n      Other  Simple_repeat
8031    chr1.61083201.61083857          (CCG)n      Other  Simple_repeat
8032    chr1.61116289.61116802            <NA>       <NA>           <NA>
8033    chr1.61124142.61125598             L2b       LINE           LINE
8034    chr1.61141361.61141883            <NA>       <NA>           <NA>
8035    chr1.61157266.61157921            <NA>       <NA>           <NA>
8036    chr1.61159944.61160324          AluSx1       SINE           SINE
8037    chr1.61159944.61160324            MIRc       SINE           SINE
8038    chr1.61159944.61160324           MER5A        DNA            DNA
8039    chr1.61162552.61162795            <NA>       <NA>           <NA>
8040    chr1.61170265.61170620            <NA>       <NA>           <NA>
8041    chr1.61182154.61182334            <NA>       <NA>           <NA>
8042    chr1.61183652.61184915          A-rich      Other Low_complexity
8043    chr1.61224648.61224912            <NA>       <NA>           <NA>
8044    chr1.61253311.61253654            <NA>       <NA>           <NA>
8045    chr1.61271115.61271739            <NA>       <NA>           <NA>
8046    chr1.61286227.61286619            AluY       SINE           SINE
8047    chr1.61286227.61286619             L2c       LINE           LINE
8048    chr1.61286227.61286619             L2a       LINE           LINE
8049    chr1.61286947.61287470             L2a       LINE           LINE
8050    chr1.61286947.61287470             L2a       LINE           LINE
8051    chr1.61293348.61293961             L2c       LINE           LINE
8052    chr1.61318300.61319062            <NA>       <NA>           <NA>
8053    chr1.61334834.61335435            <NA>       <NA>           <NA>
8054    chr1.61337848.61338505            <NA>       <NA>           <NA>
8055    chr1.61357085.61357509             L2c       LINE           LINE
8056    chr1.61357085.61357509        MamRep38        DNA            DNA
8057    chr1.61357085.61357509             L2c       LINE           LINE
8058    chr1.61368914.61369145             L2a       LINE           LINE
8059    chr1.61370082.61371044            <NA>       <NA>           <NA>
8060    chr1.61377362.61377800            <NA>       <NA>           <NA>
8061    chr1.61415921.61416163          L1MC4a       LINE           LINE
8062    chr1.61420995.61421628             L2a       LINE           LINE
8063    chr1.61426912.61427224            <NA>       <NA>           <NA>
8064    chr1.61434090.61434542            <NA>       <NA>           <NA>
8065    chr1.61436530.61437324            <NA>       <NA>           <NA>
8066    chr1.61444309.61444496            <NA>       <NA>           <NA>
8067    chr1.61452999.61453843            (T)n      Other  Simple_repeat
8068    chr1.61452999.61453843           (CT)n      Other  Simple_repeat
8069    chr1.61491384.61492067      ERVL-E-int        LTR            LTR
8070    chr1.61496635.61497085             MIR       SINE           SINE
8071    chr1.61498451.61498724       MamRep137        DNA            DNA
8072    chr1.61504570.61505375           MER5A        DNA            DNA
8073    chr1.61504570.61505375            MIR3       SINE           SINE
8074    chr1.61506182.61506593          MLT1A1        LTR            LTR
8075    chr1.61506182.61506593        MamRep38        DNA            DNA
8076    chr1.61538315.61538828           L1M4b       LINE           LINE
8077    chr1.61556417.61556864             L2b       LINE           LINE
8078    chr1.61588575.61589170           (TC)n      Other  Simple_repeat
8079    chr1.61605721.61606191             L2a       LINE           LINE
8080    chr1.61616126.61617069          AluSx1       SINE           SINE
8081    chr1.61616126.61617069           (AC)n      Other  Simple_repeat
8082    chr1.61616126.61617069             L2c       LINE           LINE
8083    chr1.61616126.61617069           MLT1K        LTR            LTR
8084    chr1.61620589.61620859             L2c       LINE           LINE
8085    chr1.61633323.61633709      ERVL-E-int        LTR            LTR
8086    chr1.61641686.61642142            <NA>       <NA>           <NA>
8087    chr1.61660167.61660729            MIR3       SINE           SINE
8088    chr1.61660167.61660729           THE1B        LTR            LTR
8089    chr1.61660167.61660729            AluY       SINE           SINE
8090    chr1.61708885.61709348           AluJb       SINE           SINE
8091    chr1.61711292.61711591          AluSq2       SINE           SINE
8092    chr1.61711292.61711591           AluJb       SINE           SINE
8093    chr1.61724481.61725640             L2b       LINE           LINE
8094    chr1.61724481.61725640            MIRb       SINE           SINE
8095    chr1.61741895.61743498      (CCCGCCC)n      Other  Simple_repeat
8096    chr1.61741895.61743498         (GCCC)n      Other  Simple_repeat
8097    chr1.61741895.61743498             L2c       LINE           LINE
8098    chr1.61772743.61772929            MIRb       SINE           SINE
8099    chr1.61839715.61839990      (CTCCTCA)n      Other  Simple_repeat
8100    chr1.61842079.61842448            <NA>       <NA>           <NA>
8101    chr1.61851400.61852499             L2a       LINE           LINE
8102    chr1.61851400.61852499             L2a       LINE           LINE
8103    chr1.61851400.61852499          AluSz6       SINE           SINE
8104    chr1.61851400.61852499          AluSz6       SINE           SINE
8105    chr1.61851400.61852499              U6      Other          snRNA
8106    chr1.61873522.61873997          MLT1A0        LTR            LTR
8107    chr1.61873522.61873997          MER61C        LTR            LTR
8108    chr1.61879903.61880366           AluSz       SINE           SINE
8109    chr1.61879903.61880366             L2a       LINE           LINE
8110    chr1.61887252.61888304          AluSz6       SINE           SINE
8111    chr1.61898743.61898993           AluJb       SINE           SINE
8112    chr1.61914851.61915331             L2b       LINE           LINE
8113    chr1.61914851.61915331            L1M5       LINE           LINE
8114    chr1.61925940.61926305          LTR37B        LTR            LTR
8115    chr1.61925940.61926305             L2a       LINE           LINE
8116    chr1.61934920.61935305            <NA>       <NA>           <NA>
8117    chr1.61951711.61952560           (GA)n      Other  Simple_repeat
8118    chr1.61967789.61968262       (TGCTTT)n      Other  Simple_repeat
8119    chr1.61995825.61996173            <NA>       <NA>           <NA>
8120    chr1.62045570.62046039           AluJb       SINE           SINE
8121    chr1.62068437.62069423           MLT1K        LTR            LTR
8122    chr1.62068437.62069423             MIR       SINE           SINE
8123    chr1.62076376.62076752            <NA>       <NA>           <NA>
8124    chr1.62082523.62083179          MER58B        DNA            DNA
8125    chr1.62082523.62083179          AluSq2       SINE           SINE
8126    chr1.62121988.62122778           AluSx       SINE           SINE
8127    chr1.62121988.62122778          AluSx1       SINE           SINE
8128    chr1.62130909.62131763           AluSp       SINE           SINE
8129    chr1.62130909.62131763           AluJb       SINE           SINE
8130    chr1.62142327.62143062              L3       LINE           LINE
8131    chr1.62142327.62143062             L2c       LINE           LINE
8132    chr1.62142327.62143062             L2c       LINE           LINE
8133    chr1.62175587.62176182           AluSg       SINE           SINE
8134    chr1.62194745.62194991            <NA>       <NA>           <NA>
8135    chr1.62198743.62199011           AluJr       SINE           SINE
8136    chr1.62218638.62218878          AluSq2       SINE           SINE
8137    chr1.62218638.62218878           AluJr       SINE           SINE
8138    chr1.62218638.62218878           L1MB2       LINE           LINE
8139    chr1.62228750.62229255             MIR       SINE           SINE
8140    chr1.62230671.62231160           AluSz       SINE           SINE
8141    chr1.62237776.62238318            <NA>       <NA>           <NA>
8142    chr1.62241322.62241876             L2a       LINE           LINE
8143    chr1.62247458.62248134             L2c       LINE           LINE
8144    chr1.62252313.62252680            <NA>       <NA>           <NA>
8145    chr1.62263354.62264000            <NA>       <NA>           <NA>
8146    chr1.62266209.62266675            <NA>       <NA>           <NA>
8147    chr1.62269957.62270204           MER5B        DNA            DNA
8148    chr1.62269957.62270204             L2a       LINE           LINE
8149    chr1.62278925.62279785           (CA)n      Other  Simple_repeat
8150    chr1.62278925.62279785             MIR       SINE           SINE
8151    chr1.62286183.62287380          G-rich      Other Low_complexity
8152    chr1.62288132.62288619            <NA>       <NA>           <NA>
8153    chr1.62294317.62294752            <NA>       <NA>           <NA>
8154    chr1.62299690.62300157             L2a       LINE           LINE
8155    chr1.62308063.62308527            <NA>       <NA>           <NA>
8156    chr1.62318569.62319422            <NA>       <NA>           <NA>
8157    chr1.62321375.62321763            MIRc       SINE           SINE
8158    chr1.62325228.62325489          MER63C        DNA            DNA
8159    chr1.62325228.62325489   ERV3-16A3_LTR        LTR            LTR
8160    chr1.62327396.62327904          MER52C        LTR            LTR
8161    chr1.62333607.62333846           MLT1G        LTR            LTR
8162    chr1.62333607.62333846          AluSq2       SINE           SINE
8163    chr1.62356373.62356965             MIR       SINE           SINE
8164    chr1.62356373.62356965           MLT1I        LTR            LTR
8165    chr1.62371130.62371729        Charlie1        DNA            DNA
8166    chr1.62371130.62371729           AluJo       SINE           SINE
8167    chr1.62377125.62377503            <NA>       <NA>           <NA>
8168    chr1.62384445.62385010            MSTA        LTR            LTR
8169    chr1.62384445.62385010            MIRb       SINE           SINE
8170    chr1.62384445.62385010        L4_C_Mam       LINE           LINE
8171    chr1.62391522.62391805          MER91C        DNA            DNA
8172    chr1.62407338.62407809          AluSx1       SINE           SINE
8173    chr1.62435855.62437649            <NA>       <NA>           <NA>
8174    chr1.62494300.62494567            <NA>       <NA>           <NA>
8175    chr1.62530615.62530992            <NA>       <NA>           <NA>
8176    chr1.62532732.62532974             L2a       LINE           LINE
8177    chr1.62532732.62532974           MLT1L        LTR            LTR
8178    chr1.62539147.62539633            <NA>       <NA>           <NA>
8179    chr1.62621954.62622508           MLT1H        LTR            LTR
8180    chr1.62621954.62622508           AluJo       SINE           SINE
8181    chr1.62668860.62669355           AluJb       SINE           SINE
8182    chr1.62668860.62669355         LTR86A1        LTR            LTR
8183    chr1.62687414.62688822          (GGC)n      Other  Simple_repeat
8184    chr1.62690296.62690905             MIR       SINE           SINE
8185    chr1.62690296.62690905           (AC)n      Other  Simple_repeat
8186    chr1.62690296.62690905           MLT1K        LTR            LTR
8187    chr1.62720658.62721493             L2c       LINE           LINE
8188    chr1.62735419.62736230           L1MEc       LINE           LINE
8189    chr1.62735419.62736230           (TC)n      Other  Simple_repeat
8190    chr1.62751197.62751642           (TC)n      Other  Simple_repeat
8191    chr1.62751197.62751642           (TA)n      Other  Simple_repeat
8192    chr1.62778321.62778560           MER39        LTR            LTR
8193    chr1.62783593.62784740            (T)n      Other  Simple_repeat
8194    chr1.62800919.62801314             L2c       LINE           LINE
8195    chr1.62800919.62801314             L2a       LINE           LINE
8196    chr1.62800919.62801314             L2c       LINE           LINE
8197    chr1.62823338.62824128             L2c       LINE           LINE
8198    chr1.62882263.62882693            <NA>       <NA>           <NA>
8199    chr1.62920147.62920625           AluJr       SINE           SINE
8200    chr1.62962711.62963608           (TG)n      Other  Simple_repeat
8201    chr1.62962711.62963608            MIRb       SINE           SINE
8202    chr1.63033156.63033498          MER61E        LTR            LTR
8203    chr1.63042215.63042815            <NA>       <NA>           <NA>
8204    chr1.63073952.63074345            <NA>       <NA>           <NA>
8205    chr1.63088090.63088253            <NA>       <NA>           <NA>
8206    chr1.63148878.63149483          MER117        DNA            DNA
8207    chr1.63155389.63156090             L2b       LINE           LINE
8208    chr1.63155389.63156090             L2c       LINE           LINE
8209    chr1.63199745.63200001            <NA>       <NA>           <NA>
8210    chr1.63316867.63317850            <NA>       <NA>           <NA>
8211    chr1.63322277.63322903       (CCCACG)n      Other  Simple_repeat
8212    chr1.63322277.63322903         (CACC)n      Other  Simple_repeat
8213    chr1.63323046.63324079            <NA>       <NA>           <NA>
8214    chr1.63327648.63327898            <NA>       <NA>           <NA>
8215    chr1.63367136.63368161            <NA>       <NA>           <NA>
8216    chr1.63441478.63442246           AluSg       SINE           SINE
8217    chr1.63441478.63442246           AluJo       SINE           SINE
8218    chr1.63452468.63452854            (T)n      Other  Simple_repeat
8219    chr1.63522767.63523990       (TCTCTG)n      Other  Simple_repeat
8220    chr1.63557353.63557873            <NA>       <NA>           <NA>
8221    chr1.63575486.63575721           AluJr       SINE           SINE
8222    chr1.63593034.63594587       (CTCTCC)n      Other  Simple_repeat
8223    chr1.63612935.63613569             L2c       LINE           LINE
8224    chr1.63612935.63613569            (T)n      Other  Simple_repeat
8225    chr1.63612935.63613569           MLT1C        LTR            LTR
8226    chr1.63615713.63616285          AluSx1       SINE           SINE
8227    chr1.63615713.63616285           MADE2        DNA            DNA
8228    chr1.63618010.63618313             MIR       SINE           SINE
8229    chr1.63618010.63618313      MamRep1151      Other           LTR?
8230    chr1.63624892.63625478            <NA>       <NA>           <NA>
8231    chr1.63631932.63632376            <NA>       <NA>           <NA>
8232    chr1.63634476.63635397             MIR       SINE           SINE
8233    chr1.63634476.63635397             MIR       SINE           SINE
8234    chr1.63643478.63644341             L2b       LINE           LINE
8235    chr1.63651119.63651638            <NA>       <NA>           <NA>
8236    chr1.63662168.63662738            <NA>       <NA>           <NA>
8237    chr1.63662860.63663173            <NA>       <NA>           <NA>
8238    chr1.63663288.63663684             L2b       LINE           LINE
8239    chr1.63663916.63664198            <NA>       <NA>           <NA>
8240    chr1.63674083.63675056           AluJb       SINE           SINE
8241    chr1.63674083.63675056             L2a       LINE           LINE
8242    chr1.63674083.63675056            MIRb       SINE           SINE
8243    chr1.63691660.63692369          FLAM_C       SINE           SINE
8244    chr1.63691660.63692369             L2b       LINE           LINE
8245    chr1.63691660.63692369         (TTTC)n      Other  Simple_repeat
8246    chr1.63697834.63698962        MamSINE1       SINE           SINE
8247    chr1.63704543.63704750            MIRc       SINE           SINE
8248    chr1.63704543.63704750             L2b       LINE           LINE
8249    chr1.63714064.63714630             L2b       LINE           LINE
8250    chr1.63714064.63714630           MLT1I        LTR            LTR
8251    chr1.63721446.63722166          L1MA5A       LINE           LINE
8252    chr1.63721446.63722166            MIRb       SINE           SINE
8253    chr1.63730282.63730790           AluJr       SINE           SINE
8254    chr1.63731375.63731988            MIRb       SINE           SINE
8255    chr1.63746112.63746855            MIRc       SINE           SINE
8256    chr1.63771756.63772075            MIR3       SINE           SINE
8257    chr1.63773666.63775384            MIR3       SINE           SINE
8258    chr1.63773666.63775384            MIR3       SINE           SINE
8259    chr1.63773666.63775384        (GGAGG)n      Other  Simple_repeat
8260    chr1.63773666.63775384          (GCC)n      Other  Simple_repeat
8261    chr1.63773666.63775384           (GC)n      Other  Simple_repeat
8262    chr1.63784642.63785664            MIRb       SINE           SINE
8263    chr1.63784642.63785664          AluSx1       SINE           SINE
8264    chr1.63787936.63788165            <NA>       <NA>           <NA>
8265    chr1.63792098.63792556             L2a       LINE           LINE
8266    chr1.63792098.63792556             MIR       SINE           SINE
8267    chr1.63792098.63792556            MIRc       SINE           SINE
8268    chr1.63795158.63796102            <NA>       <NA>           <NA>
8269    chr1.63813810.63814044            <NA>       <NA>           <NA>
8270    chr1.63816959.63817593             L2b       LINE           LINE
8271    chr1.63821438.63822151            <NA>       <NA>           <NA>
8272    chr1.63835033.63835457            MIRb       SINE           SINE
8273    chr1.63835033.63835457             L2c       LINE           LINE
8274    chr1.63838430.63839051        Tigger3b        DNA            DNA
8275    chr1.63848771.63849175            <NA>       <NA>           <NA>
8276    chr1.63854083.63854630            MIR3       SINE           SINE
8277    chr1.63854083.63854630             L2a       LINE           LINE
8278    chr1.63857373.63858030           L1MEc       LINE           LINE
8279    chr1.63857373.63858030             MIR       SINE           SINE
8280    chr1.63859632.63860135            MIRb       SINE           SINE
8281    chr1.63859632.63860135             MIR       SINE           SINE
8282    chr1.63863177.63863541             L2c       LINE           LINE
8283    chr1.63863177.63863541            MIR3       SINE           SINE
8284    chr1.63867994.63868780          (GTT)n      Other  Simple_repeat
8285    chr1.63867994.63868780            MIRb       SINE           SINE
8286    chr1.63867994.63868780             L2c       LINE           LINE
8287    chr1.63874349.63874845              L3       LINE           LINE
8288    chr1.63877877.63878225            <NA>       <NA>           <NA>
8289    chr1.63880997.63881430        L4_C_Mam       LINE           LINE
8290    chr1.63889036.63889411           MLT1F        LTR            LTR
8291    chr1.63889036.63889411            MIRb       SINE           SINE
8292    chr1.63892678.63893354            MIR3       SINE           SINE
8293    chr1.63904926.63905162            <NA>       <NA>           <NA>
8294    chr1.63912579.63913071             L2c       LINE           LINE
8295    chr1.63913579.63914156            <NA>       <NA>           <NA>
8296    chr1.63920300.63921816             MIR       SINE           SINE
8297    chr1.63920300.63921816             L2a       LINE           LINE
8298    chr1.63920300.63921816            MIRb       SINE           SINE
8299    chr1.63920300.63921816          MER5A1        DNA            DNA
8300    chr1.63920300.63921816            MIRc       SINE           SINE
8301    chr1.63922985.63923171            <NA>       <NA>           <NA>
8302    chr1.63931434.63932017            MIRb       SINE           SINE
8303    chr1.63931434.63932017          MER44B        DNA            DNA
8304    chr1.63931434.63932017            MIRb       SINE           SINE
8305    chr1.63933768.63934079            MIRb       SINE           SINE
8306    chr1.63935303.63935763            <NA>       <NA>           <NA>
8307    chr1.63937180.63937415             L2c       LINE           LINE
8308    chr1.63946776.63947367            <NA>       <NA>           <NA>
8309    chr1.63951439.63951666             L2a       LINE           LINE
8310    chr1.63955769.63956416            <NA>       <NA>           <NA>
8311    chr1.63957027.63957241            <NA>       <NA>           <NA>
8312    chr1.63969397.63970271             L2c       LINE           LINE
8313    chr1.63969397.63970271      (CCACTGC)n      Other  Simple_repeat
8314    chr1.63969397.63970271             L2c       LINE           LINE
8315    chr1.63971700.63972132            <NA>       <NA>           <NA>
8316    chr1.63972995.63973579            <NA>       <NA>           <NA>
8317    chr1.63984125.63984497            MIRb       SINE           SINE
8318    chr1.63987117.63987466            MIRb       SINE           SINE
8319    chr1.64006442.64007361            MIRc       SINE           SINE
8320    chr1.64006442.64007361          MER117        DNA            DNA
8321    chr1.64006442.64007361            MIR3       SINE           SINE
8322    chr1.64019785.64020182           MLT1C        LTR            LTR
8323    chr1.64025186.64025565              L3       LINE           LINE
8324    chr1.64025186.64025565           L1PB1       LINE           LINE
8325    chr1.64033901.64034078            MIRb       SINE           SINE
8326    chr1.64033901.64034078         MamRTE1       LINE           LINE
8327    chr1.64037950.64038478            <NA>       <NA>           <NA>
8328    chr1.64039430.64039939          MER131      Other           DNA?
8329    chr1.64042455.64043080             MIR       SINE           SINE
8330    chr1.64042455.64043080            MIRc       SINE           SINE
8331    chr1.64050111.64050880            MIRb       SINE           SINE
8332    chr1.64052755.64053371            <NA>       <NA>           <NA>
8333    chr1.64060522.64061127             L2b       LINE           LINE
8334    chr1.64063245.64063489          MER34A        LTR            LTR
8335    chr1.64065505.64065978          MER68C        LTR            LTR
8336    chr1.64080753.64081208            MIRc       SINE           SINE
8337    chr1.64082479.64082879         LTR16B1        LTR            LTR
8338    chr1.64092886.64093376            <NA>       <NA>           <NA>
8339    chr1.64098323.64098775            <NA>       <NA>           <NA>
8340    chr1.64099007.64099337            MIRc       SINE           SINE
8341    chr1.64112016.64112635             MIR       SINE           SINE
8342    chr1.64112016.64112635              L2       LINE           LINE
8343    chr1.64114547.64114891            MIR3       SINE           SINE
8344    chr1.64118360.64119061           AluSg       SINE           SINE
8345    chr1.64118360.64119061            MIRb       SINE           SINE
8346    chr1.64130957.64131588           L1MB5       LINE           LINE
8347    chr1.64132880.64133445             L2c       LINE           LINE
8348    chr1.64137173.64137454            <NA>       <NA>           <NA>
8349    chr1.64138119.64139109           MER53        DNA            DNA
8350    chr1.64138119.64139109           AluYc       SINE           SINE
8351    chr1.64138119.64139109          AluSz6       SINE           SINE
8352    chr1.64164082.64164372            MIRb       SINE           SINE
8353    chr1.64171588.64172712            <NA>       <NA>           <NA>
8354    chr1.64184160.64184481        Tigger3b        DNA            DNA
8355    chr1.64186288.64186841           MLT1I        LTR            LTR
8356    chr1.64186288.64186841          LTR18A        LTR            LTR
8357    chr1.64222953.64224120             L2c       LINE           LINE
8358    chr1.64222953.64224120             L2c       LINE           LINE
8359    chr1.64228255.64228499             L2c       LINE           LINE
8360    chr1.64240293.64240583              L3       LINE           LINE
8361    chr1.64243611.64244064             MIR       SINE           SINE
8362    chr1.64262365.64262785         MLT1E1A        LTR            LTR
8363    chr1.64263345.64264097          MLT1J2        LTR            LTR
8364    chr1.64263345.64264097          LTR33C        LTR            LTR
8365    chr1.64269018.64269769          AluSx3       SINE           SINE
8366    chr1.64288507.64289007             L2a       LINE           LINE
8367    chr1.64302857.64303351          MLT1H1        LTR            LTR
8368    chr1.64311348.64311812          MLT2B4        LTR            LTR
8369    chr1.64311348.64311812       MLT1O-int        LTR            LTR
8370    chr1.64311348.64311812           MER96        DNA            DNA
8371    chr1.64313787.64314200          AluYk4       SINE           SINE
8372    chr1.64320106.64320319            MIRc       SINE           SINE
8373    chr1.64321300.64321556          G-rich      Other Low_complexity
8374    chr1.64321300.64321556             L2c       LINE           LINE
8375    chr1.64343259.64343824             L2a       LINE           LINE
8376    chr1.64343259.64343824             L2c       LINE           LINE
8377    chr1.64348861.64349726           (GT)n      Other  Simple_repeat
8378    chr1.64357150.64357966             MIR       SINE           SINE
8379    chr1.64357150.64357966         (CCTC)n      Other  Simple_repeat
8380    chr1.64357150.64357966       (CACCCC)n      Other  Simple_repeat
8381    chr1.64357150.64357966             L2c       LINE           LINE
8382    chr1.64423614.64423888          AluSz6       SINE           SINE
8383    chr1.64423614.64423888           MER49        LTR            LTR
8384    chr1.64469685.64471782            MIRb       SINE           SINE
8385    chr1.64469685.64471782       (CGGCTC)n      Other  Simple_repeat
8386    chr1.64474750.64474956         MamRTE1       LINE           LINE
8387    chr1.64476333.64477205            <NA>       <NA>           <NA>
8388    chr1.64481447.64481720            <NA>       <NA>           <NA>
8389    chr1.64505224.64506708        (CCGCC)n      Other  Simple_repeat
8390    chr1.64505224.64506708        (CGCCC)n      Other  Simple_repeat
8391    chr1.64505224.64506708             L2b       LINE           LINE
8392    chr1.64505224.64506708            MIRb       SINE           SINE
8393    chr1.64505224.64506708             MIR       SINE           SINE
8394    chr1.64514252.64514757              L3       LINE           LINE
8395    chr1.64519776.64520491      Charlie19a        DNA            DNA
8396    chr1.64519776.64520491          LTR82A        LTR            LTR
8397    chr1.64539639.64540138             L2a       LINE           LINE
8398    chr1.64539639.64540138             L2c       LINE           LINE
8399    chr1.64546055.64546448           AluJb       SINE           SINE
8400    chr1.64572461.64573045            <NA>       <NA>           <NA>
8401    chr1.64574428.64574588            <NA>       <NA>           <NA>
8402    chr1.64576348.64576609            <NA>       <NA>           <NA>
8403    chr1.64598001.64598629            <NA>       <NA>           <NA>
8404    chr1.64601291.64601514              L3       LINE           LINE
8405    chr1.64615824.64616640            MIR3       SINE           SINE
8406    chr1.64615824.64616640              L2       LINE           LINE
8407    chr1.64615824.64616640             L2c       LINE           LINE
8408    chr1.64623711.64624255            <NA>       <NA>           <NA>
8409    chr1.64624493.64624834        MamSINE1       SINE           SINE
8410    chr1.64624493.64624834            MIRb       SINE           SINE
8411    chr1.64658785.64659250             L2c       LINE           LINE
8412    chr1.64658785.64659250         LTR16A2        LTR            LTR
8413    chr1.64659646.64660019            <NA>       <NA>           <NA>
8414    chr1.64663618.64664098            <NA>       <NA>           <NA>
8415    chr1.64669185.64669681            MIRb       SINE           SINE
8416    chr1.64680402.64680919           AluSz       SINE           SINE
8417    chr1.64691467.64692066            <NA>       <NA>           <NA>
8418    chr1.64725538.64725874      LTR101_Mam        LTR            LTR
8419    chr1.64725538.64725874           MLT1I        LTR            LTR
8420    chr1.64734010.64734258            <NA>       <NA>           <NA>
8421    chr1.64744528.64746090          G-rich      Other Low_complexity
8422    chr1.64744528.64746090      (CCTCCTC)n      Other  Simple_repeat
8423    chr1.64744528.64746090       (GGCGGC)n      Other  Simple_repeat
8424    chr1.64744528.64746090        MIR1_Amn       SINE           SINE
8425    chr1.64757229.64757803           L1MD3       LINE           LINE
8426    chr1.64757229.64757803           MLT1B        LTR            LTR
8427    chr1.64757229.64757803           L1MD3       LINE           LINE
8428    chr1.64760084.64760477             L2c       LINE           LINE
8429    chr1.64760084.64760477           MLT1J        LTR            LTR
8430    chr1.64760084.64760477       MLT1J-int        LTR            LTR
8431    chr1.64760084.64760477             L2c       LINE           LINE
8432    chr1.64811181.64811517    Tigger2b_Pri        DNA            DNA
8433    chr1.64823832.64824445          AluSx1       SINE           SINE
8434    chr1.64829539.64830187           L1MC5       LINE           LINE
8435    chr1.64834866.64835220            <NA>       <NA>           <NA>
8436    chr1.64837213.64837728             L2c       LINE           LINE
8437    chr1.64861523.64862078            <NA>       <NA>           <NA>
8438    chr1.64864021.64864437            <NA>       <NA>           <NA>
8439    chr1.64874541.64875192    Tigger2b_Pri        DNA            DNA
8440    chr1.64874541.64875192            ORSL        DNA            DNA
8441    chr1.64884686.64885086             L2b       LINE           LINE
8442    chr1.64890857.64891974             MIR       SINE           SINE
8443    chr1.64890857.64891974            MIRb       SINE           SINE
8444    chr1.64897873.64898826            <NA>       <NA>           <NA>
8445    chr1.64901004.64901248             L2c       LINE           LINE
8446    chr1.64917405.64917868            HAL1       LINE           LINE
8447    chr1.64921357.64921578            MIRc       SINE           SINE
8448    chr1.64933154.64933871             MIR       SINE           SINE
8449    chr1.64956101.64956645          MER58B        DNA            DNA
8450    chr1.64956101.64956645             L2a       LINE           LINE
8451    chr1.64965403.64967013        (CCGCC)n      Other  Simple_repeat
8452    chr1.64983087.64983463            <NA>       <NA>           <NA>
8453    chr1.64987415.64987877            <NA>       <NA>           <NA>
8454    chr1.65001330.65001576           (TG)n      Other  Simple_repeat
8455    chr1.65002195.65003325         (GTAT)n      Other  Simple_repeat
8456    chr1.65002195.65003325            MIRb       SINE           SINE
8457    chr1.65002195.65003325          (CGG)n      Other  Simple_repeat
8458    chr1.65002195.65003325            (T)n      Other  Simple_repeat
8459    chr1.65020904.65021219           LTR33        LTR            LTR
8460    chr1.65027680.65028197         LTR16B1        LTR            LTR
8461    chr1.65027680.65028197             L2a       LINE           LINE
8462    chr1.65039522.65039855            MIRb       SINE           SINE
8463    chr1.65039522.65039855           MLT1D        LTR            LTR
8464    chr1.65066517.65067540         (CCCT)n      Other  Simple_repeat
8465    chr1.65066517.65067540          (TCC)n      Other  Simple_repeat
8466    chr1.65066517.65067540        (CCCCT)n      Other  Simple_repeat
8467    chr1.65066517.65067540        (GGCCC)n      Other  Simple_repeat
8468    chr1.65066517.65067540      (GCCCCCG)n      Other  Simple_repeat
8469    chr1.65067676.65068375            (A)n      Other  Simple_repeat
8470    chr1.65067676.65068375           (TG)n      Other  Simple_repeat
8471    chr1.65075329.65075864              L2       LINE           LINE
8472    chr1.65075329.65075864             L2a       LINE           LINE
8473    chr1.65105697.65106507             L2c       LINE           LINE
8474    chr1.65105697.65106507           AluSx       SINE           SINE
8475    chr1.65105697.65106507          MER5A1        DNA            DNA
8476    chr1.65112763.65113277             L2a       LINE           LINE
8477    chr1.65112763.65113277              L3       LINE           LINE
8478    chr1.65112763.65113277      CR1-3_Croc       LINE           LINE
8479    chr1.65114120.65114638           AluSg       SINE           SINE
8480    chr1.65114120.65114638           AluJb       SINE           SINE
8481    chr1.65119890.65120263            MIRb       SINE           SINE
8482    chr1.65139993.65140418         LTR5_Hs        LTR            LTR
8483    chr1.65141437.65141904            <NA>       <NA>           <NA>
8484    chr1.65147364.65149466        (GGAGT)n      Other  Simple_repeat
8485    chr1.65147364.65149466         GA-rich      Other Low_complexity
8486    chr1.65147364.65149466      (CCGTACC)n      Other  Simple_repeat
8487    chr1.65175198.65175713            <NA>       <NA>           <NA>
8488    chr1.65196096.65196386            <NA>       <NA>           <NA>
8489    chr1.65209220.65209860           AluJb       SINE           SINE
8490    chr1.65215663.65216583          AluSz6       SINE           SINE
8491    chr1.65231706.65231991            <NA>       <NA>           <NA>
8492    chr1.65232475.65233135            MIRc       SINE           SINE
8493    chr1.65232475.65233135         LTR33A_        LTR            LTR
8494    chr1.65232475.65233135           AluJo       SINE           SINE
8495    chr1.65247706.65248492              L3       LINE           LINE
8496    chr1.65254110.65255790          (GCG)n      Other  Simple_repeat
8497    chr1.65254110.65255790             L2c       LINE           LINE
8498    chr1.65254110.65255790             L2a       LINE           LINE
8499    chr1.65260977.65261360            <NA>       <NA>           <NA>
8500    chr1.65264387.65264869             L2b       LINE           LINE
8501    chr1.65265510.65266446            <NA>       <NA>           <NA>
8502    chr1.65277712.65279741           LTR36        LTR            LTR
8503    chr1.65277712.65279741          L1ME3A       LINE           LINE
8504    chr1.65277712.65279741            MIR3       SINE           SINE
8505    chr1.65277712.65279741       (ATACAC)n      Other  Simple_repeat
8506    chr1.65277712.65279741             L2b       LINE           LINE
8507    chr1.65284140.65284624            <NA>       <NA>           <NA>
8508    chr1.65292850.65293464           MLT1H        LTR            LTR
8509    chr1.65292850.65293464           MLT1B        LTR            LTR
8510    chr1.65300363.65300831           MLT1J        LTR            LTR
8511    chr1.65309199.65310346         (CCCT)n      Other  Simple_repeat
8512    chr1.65309199.65310346         (CTCC)n      Other  Simple_repeat
8513    chr1.65309199.65310346          G-rich      Other Low_complexity
8514    chr1.65316303.65316530             L2c       LINE           LINE
8515    chr1.65320149.65320568            MIRc       SINE           SINE
8516    chr1.65339917.65340425            MIR3       SINE           SINE
8517    chr1.65355207.65355812           AluJb       SINE           SINE
8518    chr1.65371517.65371859            <NA>       <NA>           <NA>
8519    chr1.65393457.65393784        MamSINE1       SINE           SINE
8520    chr1.65396113.65396684             L2a       LINE           LINE
8521    chr1.65412169.65412609            <NA>       <NA>           <NA>
8522    chr1.65419750.65421351          G-rich      Other Low_complexity
8523    chr1.65425721.65426127             L2c       LINE           LINE
8524    chr1.65425721.65426127             L2a       LINE           LINE
8525    chr1.65429895.65430180            <NA>       <NA>           <NA>
8526    chr1.65430751.65431342             L2c       LINE           LINE
8527    chr1.65430751.65431342             L2c       LINE           LINE
8528    chr1.65434784.65435094            <NA>       <NA>           <NA>
8529    chr1.65435934.65436335            <NA>       <NA>           <NA>
8530    chr1.65459344.65459800          LTR41C        LTR            LTR
8531    chr1.65459344.65459800          LTR41C        LTR            LTR
8532    chr1.65459344.65459800             L2a       LINE           LINE
8533    chr1.65467486.65467892           L1PA6       LINE           LINE
8534    chr1.65469196.65470034            <NA>       <NA>           <NA>
8535    chr1.65513035.65513430            <NA>       <NA>           <NA>
8536    chr1.65525289.65526174            <NA>       <NA>           <NA>
8537    chr1.65554008.65554837           L1PA7       LINE           LINE
8538    chr1.65615849.65616152            <NA>       <NA>           <NA>
8539    chr1.65621561.65622452          LTR19A        LTR            LTR
8540    chr1.65687546.65688324      (CCTTCTG)n      Other  Simple_repeat
8541    chr1.65792212.65793732            <NA>       <NA>           <NA>
8542    chr1.65818075.65818258             L2a       LINE           LINE
8543    chr1.65821060.65821230            <NA>       <NA>           <NA>
8544    chr1.65848903.65849440           LTR41        LTR            LTR
8545    chr1.65881122.65881379           LTR33        LTR            LTR
8546    chr1.65881122.65881379          LTR16A        LTR            LTR
8547    chr1.65904472.65905158             MIR       SINE           SINE
8548    chr1.65924363.65924954          AluYa5       SINE           SINE
8549    chr1.65924363.65924954           L1MEd       LINE           LINE
8550    chr1.65924363.65924954          MLT1F2        LTR            LTR
8551    chr1.65948850.65949253 ERV3-16A3_I-int        LTR            LTR
8552    chr1.65952720.65953390            MIRb       SINE           SINE
8553    chr1.65952720.65953390          Zaphod        DNA            DNA
8554    chr1.65952720.65953390           MLT1D        LTR            LTR
8555    chr1.65958968.65959299            <NA>       <NA>           <NA>
8556    chr1.65959848.65960288           AluJo       SINE           SINE
8557    chr1.66033495.66034096         (TTTC)n      Other  Simple_repeat
8558    chr1.66047787.66048319         MamRTE1       LINE           LINE
8559    chr1.66082938.66083600              L2       LINE           LINE
8560    chr1.66082938.66083600            MIRb       SINE           SINE
8561    chr1.66137314.66137795             L2b       LINE           LINE
8562    chr1.66137314.66137795            MIRc       SINE           SINE
8563    chr1.66175656.66175873            <NA>       <NA>           <NA>
8564    chr1.66207639.66208140            <NA>       <NA>           <NA>
8565    chr1.66210759.66211139            <NA>       <NA>           <NA>
8566    chr1.66217110.66217458           LTR33        LTR            LTR
8567    chr1.66217110.66217458           LTR33        LTR            LTR
8568    chr1.66240987.66241399            <NA>       <NA>           <NA>
8569    chr1.66242749.66243129            <NA>       <NA>           <NA>
8570    chr1.66243371.66243934             L2c       LINE           LINE
8571    chr1.66251597.66251882              L2       LINE           LINE
8572    chr1.66253247.66253819             MIR       SINE           SINE
8573    chr1.66253247.66253819        (TTTTG)n      Other  Simple_repeat
8574    chr1.66262276.66262724             MIR       SINE           SINE
8575    chr1.66262276.66262724            MIRc       SINE           SINE
8576    chr1.66262276.66262724             L2c       LINE           LINE
8577    chr1.66271293.66272236            <NA>       <NA>           <NA>
8578    chr1.66273723.66274040             L2b       LINE           LINE
8579    chr1.66273723.66274040             L2b       LINE           LINE
8580    chr1.66282343.66283177            MIRc       SINE           SINE
8581    chr1.66282343.66283177            MIRb       SINE           SINE
8582    chr1.66282343.66283177             L2c       LINE           LINE
8583    chr1.66282343.66283177             MIR       SINE           SINE
8584    chr1.66294792.66295269          MER112        DNA            DNA
8585    chr1.66300416.66300773            MIR3       SINE           SINE
8586    chr1.66300416.66300773             L2c       LINE           LINE
8587    chr1.66311203.66311984            MIRc       SINE           SINE
8588    chr1.66315752.66315999             L2c       LINE           LINE
8589    chr1.66331753.66332753            <NA>       <NA>           <NA>
8590    chr1.66356693.66356917            <NA>       <NA>           <NA>
8591    chr1.66360310.66360595          MER135        DNA            DNA
8592    chr1.66371332.66372075            MIRb       SINE           SINE
8593    chr1.66374761.66375090            MIR3       SINE           SINE
8594    chr1.66380958.66381327             L2a       LINE           LINE
8595    chr1.66436509.66437067            MIR3       SINE           SINE
8596    chr1.66436509.66437067       Charlie17        DNA            DNA
8597    chr1.66436509.66437067      Charlie17b        DNA            DNA
8598    chr1.66446299.66446871             L2a       LINE           LINE
8599    chr1.66450017.66450715           MLT1C        LTR            LTR
8600    chr1.66450017.66450715            MIRb       SINE           SINE
8601    chr1.66464816.66465197           MLT1L        LTR            LTR
8602    chr1.66466228.66467056           L1PA4       LINE           LINE
8603    chr1.66477900.66478454             L2c       LINE           LINE
8604    chr1.66477900.66478454             L2c       LINE           LINE
8605    chr1.66490144.66490451            <NA>       <NA>           <NA>
8606    chr1.66490851.66491058            <NA>       <NA>           <NA>
8607    chr1.66494227.66494867          MLT1A0        LTR            LTR
8608    chr1.66494227.66494867          MLT1J1        LTR            LTR
8609    chr1.66503884.66504298       (TTCTAT)n      Other  Simple_repeat
8610    chr1.66503884.66504298          MER45A        DNA            DNA
8611    chr1.66505736.66506104           AluJr       SINE           SINE
8612    chr1.66505736.66506104           LTR8B        LTR            LTR
8613    chr1.66506263.66506819           LTR8B        LTR            LTR
8614    chr1.66506263.66506819           AluJr       SINE           SINE
8615    chr1.66506263.66506819         MER102c        DNA            DNA
8616    chr1.66523524.66524024      ERVL-E-int        LTR            LTR
8617    chr1.66533086.66534571           (GA)n      Other  Simple_repeat
8618    chr1.66533086.66534571          A-rich      Other Low_complexity
8619    chr1.66540630.66541231            MIR3       SINE           SINE
8620    chr1.66540630.66541231             L2a       LINE           LINE
8621    chr1.66542412.66543084          MER44D        DNA            DNA
8622    chr1.66542412.66543084            MIRc       SINE           SINE
8623    chr1.66543308.66543873            MIR3       SINE           SINE
8624    chr1.66543308.66543873            MIRc       SINE           SINE
8625    chr1.66545084.66545459            MIRb       SINE           SINE
8626    chr1.66556132.66556403            <NA>       <NA>           <NA>
8627    chr1.66559572.66559825           MLT1L        LTR            LTR
8628    chr1.66563231.66564628            MIR3       SINE           SINE
8629    chr1.66563231.66564628            MIRc       SINE           SINE
8630    chr1.66575617.66576403            MIR3       SINE           SINE
8631    chr1.66575617.66576403            MIRb       SINE           SINE
8632    chr1.66576615.66577069       (CTTCTC)n      Other  Simple_repeat
8633    chr1.66598684.66598966            MSTA        LTR            LTR
8634    chr1.66598684.66598966          MER119        DNA            DNA
8635    chr1.66605517.66605777            <NA>       <NA>           <NA>
8636    chr1.66623649.66624968            MIRc       SINE           SINE
8637    chr1.66654758.66654908            <NA>       <NA>           <NA>
8638    chr1.66676811.66677572           (AC)n      Other  Simple_repeat
8639    chr1.66676811.66677572             L2b       LINE           LINE
8640    chr1.66691682.66691915           AluSg       SINE           SINE
8641    chr1.66699071.66699538              L2       LINE           LINE
8642    chr1.66725770.66726496           L1MEc       LINE           LINE
8643    chr1.66725770.66726496           LTR41        LTR            LTR
8644    chr1.66725770.66726496           LTR41        LTR            LTR
8645    chr1.66725770.66726496           L1ME1       LINE           LINE
8646    chr1.66752027.66752781            MIRb       SINE           SINE
8647    chr1.66757927.66758509          MER58B        DNA            DNA
8648    chr1.66757927.66758509             MIR       SINE           SINE
8649    chr1.66924315.66925867           AluSx       SINE           SINE
8650    chr1.66924315.66925867         GA-rich      Other Low_complexity
8651    chr1.66924315.66925867          (GGC)n      Other  Simple_repeat
8652    chr1.66924315.66925867            MIR3       SINE           SINE
8653    chr1.66929986.66931008       (GGCAGC)n      Other  Simple_repeat
8654    chr1.66937930.66938111            <NA>       <NA>           <NA>
8655    chr1.66944488.66945218           AluJb       SINE           SINE
8656    chr1.66944488.66945218            MER2        DNA            DNA
8657    chr1.66951391.66951975           AluJo       SINE           SINE
8658    chr1.66951391.66951975           AluJo       SINE           SINE
8659    chr1.66951391.66951975            MIRb       SINE           SINE
8660    chr1.66996108.66996714            MIRb       SINE           SINE
8661    chr1.67001718.67002400            <NA>       <NA>           <NA>
8662    chr1.67013601.67013814       LTR49-int        LTR            LTR
8663    chr1.67013601.67013814       LTR49-int        LTR            LTR
8664    chr1.67019587.67020344            <NA>       <NA>           <NA>
8665    chr1.67022302.67022560             L2b       LINE           LINE
8666    chr1.67031011.67031516             L2c       LINE           LINE
8667    chr1.67031011.67031516            MIRc       SINE           SINE
8668    chr1.67052810.67054589         (GCCC)n      Other  Simple_repeat
8669    chr1.67052810.67054589          (GCC)n      Other  Simple_repeat
8670    chr1.67060776.67061096          MER65B        LTR            LTR
8671    chr1.67126049.67126541            MIR3       SINE           SINE
8672    chr1.67126049.67126541           L1MEd       LINE           LINE
8673    chr1.67126049.67126541           L1MEc       LINE           LINE
8674    chr1.67148902.67149657             L2c       LINE           LINE
8675    chr1.67166225.67166557            <NA>       <NA>           <NA>
8676    chr1.67191209.67192710             L2a       LINE           LINE
8677    chr1.67191209.67192710          MER65D        LTR            LTR
8678    chr1.67191209.67192710             L2a       LINE           LINE
8679    chr1.67213287.67213530             MIR       SINE           SINE
8680    chr1.67213287.67213530        Tigger3a        DNA            DNA
8681    chr1.67307280.67308659        Charlie7        DNA            DNA
8682    chr1.67307280.67308659             MIR       SINE           SINE
8683    chr1.67307280.67308659        (CCGCC)n      Other  Simple_repeat
8684    chr1.67307280.67308659       (CCCAGC)n      Other  Simple_repeat
8685    chr1.67307280.67308659      (GCGCGGA)n      Other  Simple_repeat
8686    chr1.67307280.67308659           (TA)n      Other  Simple_repeat
8687    chr1.67307280.67308659            MIRc       SINE           SINE
8688    chr1.67314476.67314998            MIRb       SINE           SINE
8689    chr1.67316629.67317458             L2b       LINE           LINE
8690    chr1.67316629.67317458             L2c       LINE           LINE
8691    chr1.67316629.67317458           MLT1D        LTR            LTR
8692    chr1.67336751.67337124            MIRb       SINE           SINE
8693    chr1.67336751.67337124            MIRb       SINE           SINE
8694    chr1.67339602.67340704            MIRb       SINE           SINE
8695    chr1.67339602.67340704            MIRc       SINE           SINE
8696    chr1.67347569.67348479            MIR3       SINE           SINE
8697    chr1.67355836.67356362             L2a       LINE           LINE
8698    chr1.67367623.67368312            <NA>       <NA>           <NA>
8699    chr1.67393105.67394199            MIR3       SINE           SINE
8700    chr1.67399867.67400571          MER41B        LTR            LTR
8701    chr1.67399867.67400571           AluSx       SINE           SINE
8702    chr1.67399867.67400571          MER41B        LTR            LTR
8703    chr1.67404303.67404536          AluSx1       SINE           SINE
8704    chr1.67429310.67431305            <NA>       <NA>           <NA>
8705    chr1.67439220.67439847            MIRb       SINE           SINE
8706    chr1.67439220.67439847             L2c       LINE           LINE
8707    chr1.67441184.67441673            <NA>       <NA>           <NA>
8708    chr1.67460715.67461475            <NA>       <NA>           <NA>
8709    chr1.67463416.67464114             L2b       LINE           LINE
8710    chr1.67479184.67479521            <NA>       <NA>           <NA>
8711    chr1.67489735.67490082         MER102a        DNA            DNA
8712    chr1.67489735.67490082           AluJr       SINE           SINE
8713    chr1.67500414.67500881       Charlie1a        DNA            DNA
8714    chr1.67500414.67500881            MIR3       SINE           SINE
8715    chr1.67506754.67507165            HAL1       LINE           LINE
8716    chr1.67506754.67507165          AluSc8       SINE           SINE
8717    chr1.67532489.67532900            MIRb       SINE           SINE
8718    chr1.67532489.67532900            MIR3       SINE           SINE
8719    chr1.67532489.67532900            MIRc       SINE           SINE
8720    chr1.67534649.67535015            MIRc       SINE           SINE
8721    chr1.67535343.67535911             L2a       LINE           LINE
8722    chr1.67535343.67535911          AluSz6       SINE           SINE
8723    chr1.67555476.67555984       (GAGGCA)n      Other  Simple_repeat
8724    chr1.67559134.67559622            <NA>       <NA>           <NA>
8725    chr1.67561515.67562277            <NA>       <NA>           <NA>
8726    chr1.67570251.67570917            MIRb       SINE           SINE
8727    chr1.67575878.67576170            <NA>       <NA>           <NA>
8728    chr1.67580782.67581467       (CTGTCT)n      Other  Simple_repeat
8729    chr1.67580782.67581467             L2a       LINE           LINE
8730    chr1.67590395.67590940             MIR       SINE           SINE
8731    chr1.67598788.67599456             L2b       LINE           LINE
8732    chr1.67598788.67599456         (TTCA)n      Other  Simple_repeat
8733    chr1.67598788.67599456            MIRb       SINE           SINE
8734    chr1.67601431.67601859             MIR       SINE           SINE
8735    chr1.67601431.67601859             L2b       LINE           LINE
8736    chr1.67604634.67605105         (TGCC)n      Other  Simple_repeat
8737    chr1.67604634.67605105       (AGACAG)n      Other  Simple_repeat
8738    chr1.67608754.67609020             L2a       LINE           LINE
8739    chr1.67626482.67626880             L2a       LINE           LINE
8740    chr1.67626482.67626880           MLT1I        LTR            LTR
8741    chr1.67629418.67629846            MIRb       SINE           SINE
8742    chr1.67629418.67629846             MIR       SINE           SINE
8743    chr1.67629418.67629846            MIR3       SINE           SINE
8744    chr1.67646155.67647359            <NA>       <NA>           <NA>
8745    chr1.67684924.67687344       (CCCGCC)n      Other  Simple_repeat
8746    chr1.67694986.67695437           (TG)n      Other  Simple_repeat
8747    chr1.67694986.67695437             L2c       LINE           LINE
8748    chr1.67700429.67701409             L2c       LINE           LINE
8749    chr1.67706945.67707432           AluSp       SINE           SINE
8750    chr1.67710479.67710999             L2c       LINE           LINE
8751    chr1.67713460.67713773             MIR       SINE           SINE
8752    chr1.67714358.67714674            MIRc       SINE           SINE
8753    chr1.67714358.67714674          LTR67B        LTR            LTR
8754    chr1.67717989.67718133             MIR       SINE           SINE
8755    chr1.67722278.67722789            <NA>       <NA>           <NA>
8756    chr1.67723698.67724029             MIR       SINE           SINE
8757    chr1.67735975.67736676            <NA>       <NA>           <NA>
8758    chr1.67738448.67738852             L2b       LINE           LINE
8759    chr1.67738448.67738852              L2       LINE           LINE
8760    chr1.67738448.67738852          AluJr4       SINE           SINE
8761    chr1.67747758.67748119            <NA>       <NA>           <NA>
8762    chr1.67748731.67748966            <NA>       <NA>           <NA>
8763    chr1.67749591.67750361            <NA>       <NA>           <NA>
8764    chr1.67752332.67752649          MER117        DNA            DNA
8765    chr1.67752332.67752649          MER117        DNA            DNA
8766    chr1.67759799.67760704        MIR1_Amn       SINE           SINE
8767    chr1.67766231.67766835            <NA>       <NA>           <NA>
8768    chr1.67771004.67772284           (GA)n      Other  Simple_repeat
8769    chr1.67771004.67772284           LTR78        LTR            LTR
8770    chr1.67771004.67772284            MIRb       SINE           SINE
8771    chr1.67771004.67772284            MIRb       SINE           SINE
8772    chr1.67771004.67772284       Charlie4z        DNA            DNA
8773    chr1.67791630.67792262             L2a       LINE           LINE
8774    chr1.67802419.67802859            <NA>       <NA>           <NA>
8775    chr1.67803472.67804144            MIRb       SINE           SINE
8776    chr1.67803472.67804144        (AACAA)n      Other  Simple_repeat
8777    chr1.67812339.67813053            MIRc       SINE           SINE
8778    chr1.67812339.67813053            MIR3       SINE           SINE
8779    chr1.67812339.67813053            MER3        DNA            DNA
8780    chr1.67812339.67813053            MIR3       SINE           SINE
8781    chr1.67831879.67833776         (CTTC)n      Other  Simple_repeat
8782    chr1.67831879.67833776        (CGCCG)n      Other  Simple_repeat
8783    chr1.67831879.67833776       (CCGCCG)n      Other  Simple_repeat
8784    chr1.67831879.67833776          (CCT)n      Other  Simple_repeat
8785    chr1.67838601.67839036            <NA>       <NA>           <NA>
8786    chr1.67840344.67841206             L2a       LINE           LINE
8787    chr1.67840344.67841206        Charlie7        DNA            DNA
8788    chr1.67850110.67851274            MIRb       SINE           SINE
8789    chr1.67853609.67854068          MLT1N2        LTR            LTR
8790    chr1.67880024.67880724            MIRc       SINE           SINE
8791    chr1.67880024.67880724             L2b       LINE           LINE
8792    chr1.67883153.67883484         (CCAT)n      Other  Simple_repeat
8793    chr1.67883153.67883484             L2a       LINE           LINE
8794    chr1.67888617.67889103             L2b       LINE           LINE
8795    chr1.67889904.67890645              L2       LINE           LINE
8796    chr1.67889904.67890645            MIRc       SINE           SINE
8797    chr1.67897505.67898689         (GCAG)n      Other  Simple_repeat
8798    chr1.67897505.67898689           LTR32        LTR            LTR
8799    chr1.67937595.67938198          LTR18B        LTR            LTR
8800    chr1.67945838.67946639           MLT1B        LTR            LTR
8801    chr1.67948236.67948408             L2c       LINE           LINE
8802    chr1.67956920.67957426             L2c       LINE           LINE
8803    chr1.67978985.67979762             L2c       LINE           LINE
8804    chr1.68015387.68015680             MIR       SINE           SINE
8805    chr1.68050253.68050809            <NA>       <NA>           <NA>
8806    chr1.68051482.68051924            <NA>       <NA>           <NA>
8807    chr1.68065875.68066304             L2c       LINE           LINE
8808    chr1.68093743.68094119            <NA>       <NA>           <NA>
8809    chr1.68104088.68104517          LTR84b        LTR            LTR
8810    chr1.68104088.68104517      CR1-3_Croc       LINE           LINE
8811    chr1.68111782.68112330          MER91A        DNA            DNA
8812    chr1.68113017.68113336            <NA>       <NA>           <NA>
8813    chr1.68119762.68120684          LTR16C        LTR            LTR
8814    chr1.68119762.68120684            MIR3       SINE           SINE
8815    chr1.68119762.68120684        MIR1_Amn       SINE           SINE
8816    chr1.68121420.68121853            <NA>       <NA>           <NA>
8817    chr1.68127867.68129279             MIR       SINE           SINE
8818    chr1.68127867.68129279          AluSz6       SINE           SINE
8819    chr1.68136014.68136486         MER103C        DNA            DNA
8820    chr1.68140553.68140871       MamRep137        DNA            DNA
8821    chr1.68141096.68142461            <NA>       <NA>           <NA>
8822    chr1.68147557.68148154            <NA>       <NA>           <NA>
8823    chr1.68149403.68149719            <NA>       <NA>           <NA>
8824    chr1.68161800.68162233            <NA>       <NA>           <NA>
8825    chr1.68166424.68167001             MIR       SINE           SINE
8826    chr1.68167319.68168098            <NA>       <NA>           <NA>
8827    chr1.68173337.68175061           (CT)n      Other  Simple_repeat
8828    chr1.68176059.68176282            <NA>       <NA>           <NA>
8829    chr1.68178019.68178397             MIR       SINE           SINE
8830    chr1.68178019.68178397             L2c       LINE           LINE
8831    chr1.68185662.68186199           MER1B        DNA            DNA
8832    chr1.68185662.68186199          MER21B        LTR            LTR
8833    chr1.68197583.68198237            <NA>       <NA>           <NA>
8834    chr1.68203409.68203754              L3       LINE           LINE
8835    chr1.68204892.68205461             L2c       LINE           LINE
8836    chr1.68205948.68206266              L2       LINE           LINE
8837    chr1.68205948.68206266              L3       LINE           LINE
8838    chr1.68206937.68207579        (AATAC)n      Other  Simple_repeat
8839    chr1.68213815.68214332         MamRTE1       LINE           LINE
8840    chr1.68213815.68214332           (AC)n      Other  Simple_repeat
8841    chr1.68218465.68218879            <NA>       <NA>           <NA>
8842    chr1.68221056.68221706            <NA>       <NA>           <NA>
8843    chr1.68221963.68222374            <NA>       <NA>           <NA>
8844    chr1.68230369.68233045           (GT)n      Other  Simple_repeat
8845    chr1.68230369.68233045         GA-rich      Other Low_complexity
8846    chr1.68230369.68233045        (CCCAC)n      Other  Simple_repeat
8847    chr1.68230369.68233045         (CTCC)n      Other  Simple_repeat
8848    chr1.68230369.68233045         (CCTT)n      Other  Simple_repeat
8849    chr1.68234214.68234387        Tigger3a        DNA            DNA
8850    chr1.68269726.68270262          MLT1G1        LTR            LTR
8851    chr1.68269726.68270262            MIRc       SINE           SINE
8852    chr1.68279863.68280194           MER39        LTR            LTR
8853    chr1.68291892.68292455            <NA>       <NA>           <NA>
8854    chr1.68293121.68294645            MIRc       SINE           SINE
8855    chr1.68293121.68294645           (AC)n      Other  Simple_repeat
8856    chr1.68305067.68305366             L2a       LINE           LINE
8857    chr1.68307934.68308516      (CATCAGT)n      Other  Simple_repeat
8858    chr1.68313797.68314585            <NA>       <NA>           <NA>
8859    chr1.68317580.68317818          MLT1J2        LTR            LTR
8860    chr1.68320089.68320660            MIR3       SINE           SINE
8861    chr1.68321180.68321504             MIR       SINE           SINE
8862    chr1.68331097.68331683       MamRep434        DNA            DNA
8863    chr1.68342485.68343195            MIRc       SINE           SINE
8864    chr1.68342485.68343195            MIR3       SINE           SINE
8865    chr1.68373908.68374562            <NA>       <NA>           <NA>
8866    chr1.68378376.68378595      MLT1E2-int        LTR            LTR
8867    chr1.68384126.68385382          MER41B        LTR            LTR
8868    chr1.68431239.68431787            MIRc       SINE           SINE
8869    chr1.68442916.68443612             L2a       LINE           LINE
8870    chr1.68442916.68443612          MER20B        DNA            DNA
8871    chr1.68454647.68454920           MLT1H        LTR            LTR
8872    chr1.68464845.68465178             L2a       LINE           LINE
8873    chr1.68496456.68497564        (GCTGG)n      Other  Simple_repeat
8874    chr1.68542412.68542872      (TTTTTTC)n      Other  Simple_repeat
8875    chr1.68542412.68542872           MLT1O        LTR            LTR
8876    chr1.68600026.68600507            <NA>       <NA>           <NA>
8877    chr1.68623603.68624914            MIRc       SINE           SINE
8878    chr1.68623603.68624914           MLT1D        LTR            LTR
8879    chr1.68633182.68633410            <NA>       <NA>           <NA>
8880    chr1.68703889.68704664             L2a       LINE           LINE
8881    chr1.68703889.68704664             L2b       LINE           LINE
8882    chr1.68703889.68704664             MIR       SINE           SINE
8883    chr1.68724983.68725739           (TG)n      Other  Simple_repeat
8884    chr1.68808350.68808614            <NA>       <NA>           <NA>
8885    chr1.68813928.68814539           MLT1D        LTR            LTR
8886    chr1.68819276.68820668           LTR16        LTR            LTR
8887    chr1.68819276.68820668             L2b       LINE           LINE
8888    chr1.68819276.68820668           L1MB8       LINE           LINE
8889    chr1.68819276.68820668             L2c       LINE           LINE
8890    chr1.68857985.68858549          L1PA10       LINE           LINE
8891    chr1.68916180.68916944           MLT1D        LTR            LTR
8892    chr1.68958921.68959878            MIR3       SINE           SINE
8893    chr1.68973929.68974428            MIR3       SINE           SINE
8894    chr1.69055151.69055846             L2c       LINE           LINE
8895    chr1.69055151.69055846          MER61E        LTR            LTR
8896    chr1.69104925.69105402          MER58A        DNA            DNA
8897    chr1.69104925.69105402            MIRb       SINE           SINE
8898    chr1.69244151.69244464           LTR79        LTR            LTR
8899    chr1.69315552.69316442            L1M2       LINE           LINE
8900    chr1.69404558.69405094             L2a       LINE           LINE
8901    chr1.69404558.69405094         LTR33A_        LTR            LTR
8902    chr1.69522993.69523356           LTR78        LTR            LTR
8903    chr1.69524108.69524318          MER21C        LTR            LTR
8904    chr1.69524108.69524318           MER50        LTR            LTR
8905    chr1.69566924.69568657           (GA)n      Other  Simple_repeat
8906    chr1.69566924.69568657           (GT)n      Other  Simple_repeat
8907    chr1.69566924.69568657          (CGC)n      Other  Simple_repeat
8908    chr1.69566924.69568657          (CTC)n      Other  Simple_repeat
8909    chr1.69646540.69646901           MER5A        DNA            DNA
8910    chr1.69684462.69684982           L1MDa       LINE           LINE
8911    chr1.69694053.69694618            MSTB        LTR            LTR
8912    chr1.69699591.69699980           LTR78        LTR            LTR
8913    chr1.69699591.69699980           LTR78        LTR            LTR
8914    chr1.69700489.69701040            <NA>       <NA>           <NA>
8915    chr1.69707189.69707415          LTR16C        LTR            LTR
8916    chr1.69710356.69711045             L2c       LINE           LINE
8917    chr1.69737426.69738096           THE1B        LTR            LTR
8918    chr1.69737426.69738096           LTR55        LTR            LTR
8919    chr1.69747298.69747519             L2c       LINE           LINE
8920    chr1.69947926.69948498          MER44B        DNA            DNA
8921    chr1.69947926.69948498           L1MB1       LINE           LINE
8922    chr1.69976729.69977598             L2c       LINE           LINE
8923    chr1.69976729.69977598             L2c       LINE           LINE
8924    chr1.69976729.69977598           MLT1I        LTR            LTR
8925    chr1.69982834.69983549          LTR16A        LTR            LTR
8926    chr1.70034469.70034744            MIR3       SINE           SINE
8927    chr1.70042295.70042701            <NA>       <NA>           <NA>
8928    chr1.70043663.70044240            <NA>       <NA>           <NA>
8929    chr1.70048691.70048972            <NA>       <NA>           <NA>
8930    chr1.70075926.70076250            <NA>       <NA>           <NA>
8931    chr1.70132912.70133364         Plat_L3       LINE           LINE
8932    chr1.70132912.70133364           AluSz       SINE           SINE
8933    chr1.70134189.70134648            <NA>       <NA>           <NA>
8934    chr1.70140671.70141239            <NA>       <NA>           <NA>
8935    chr1.70156599.70156843          MER44B        DNA            DNA
8936    chr1.70156599.70156843          MER44B        DNA            DNA
8937    chr1.70157595.70157917            MIRb       SINE           SINE
8938    chr1.70157595.70157917             L2b       LINE           LINE
8939    chr1.70157595.70157917           AluJb       SINE           SINE
8940    chr1.70204920.70206222            <NA>       <NA>           <NA>
8941    chr1.70221237.70222152          (GCG)n      Other  Simple_repeat
8942    chr1.70221237.70222152          (GCG)n      Other  Simple_repeat
8943    chr1.70227490.70227920            <NA>       <NA>           <NA>
8944    chr1.70247870.70248099           L1MB8       LINE           LINE
8945    chr1.70257291.70257843            AluY       SINE           SINE
8946    chr1.70257291.70257843        Tigger3b        DNA            DNA
8947    chr1.70319557.70320183          AluSq2       SINE           SINE
8948    chr1.70319557.70320183             L2b       LINE           LINE
8949    chr1.70319557.70320183             L2b       LINE           LINE
8950    chr1.70353544.70355164             L2b       LINE           LINE
8951    chr1.70371370.70371949       HERVH-int        LTR            LTR
8952    chr1.70373458.70373925       HERVH-int        LTR            LTR
8953    chr1.70373458.70373925            LTR7        LTR            LTR
8954    chr1.70410613.70411782            <NA>       <NA>           <NA>
8955    chr1.70427898.70428444          AluSx1       SINE           SINE
8956    chr1.70427898.70428444           L1MA6       LINE           LINE
8957    chr1.70438606.70438906           (TG)n      Other  Simple_repeat
8958    chr1.70459787.70460450           AluJo       SINE           SINE
8959    chr1.70459787.70460450       THE1D-int        LTR            LTR
8960    chr1.70459787.70460450         LTR5_Hs        LTR            LTR
8961    chr1.70460798.70461539         LTR5_Hs        LTR            LTR
8962    chr1.70460798.70461539       THE1D-int        LTR            LTR
8963    chr1.70486901.70488283            L1M1       LINE           LINE
8964    chr1.70486901.70488283           THE1D        LTR            LTR
8965    chr1.70497238.70497508          MER63A        DNA            DNA
8966    chr1.70504272.70505329          FLAM_C       SINE           SINE
8967    chr1.70504272.70505329            MIRb       SINE           SINE
8968    chr1.70509996.70510683        (TTTTT)n      Other  Simple_repeat
8969    chr1.70509996.70510683           AluSz       SINE           SINE
8970    chr1.70528650.70529166           (GA)n      Other  Simple_repeat
8971    chr1.70536773.70537319          MLT1N2        LTR            LTR
8972    chr1.70553290.70553739             L2c       LINE           LINE
8973    chr1.70666712.70667045            <NA>       <NA>           <NA>
8974    chr1.70667786.70668182            <NA>       <NA>           <NA>
8975    chr1.70670098.70670383            MSTA        LTR            LTR
8976    chr1.70685297.70685932           L1PB4       LINE           LINE
8977    chr1.70685297.70685932           L1PB4       LINE           LINE
8978    chr1.70685297.70685932           L1PB4       LINE           LINE
8979    chr1.70706389.70706956          LTR1B0        LTR            LTR
8980    chr1.70727901.70728299          L1PA11       LINE           LINE
8981    chr1.70818282.70819689            <NA>       <NA>           <NA>
8982    chr1.70840410.70840842            (T)n      Other  Simple_repeat
8983    chr1.70846973.70847320            <NA>       <NA>           <NA>
8984    chr1.70871644.70872300            <NA>       <NA>           <NA>
8985    chr1.70874886.70875228        AmnSINE2       SINE           SINE
8986    chr1.70891078.70891907             L2c       LINE           LINE
8987    chr1.70891078.70891907       Tigger19a        DNA            DNA
8988    chr1.70899769.70900047            <NA>       <NA>           <NA>
8989    chr1.70907758.70908177      ERVL-E-int        LTR            LTR
8990    chr1.70934079.70934827            MIRb       SINE           SINE
8991    chr1.70934079.70934827            MIRc       SINE           SINE
8992    chr1.70941532.70942549             L2c       LINE           LINE
8993    chr1.70941532.70942549            MIR3       SINE           SINE
8994    chr1.70941532.70942549          MLT1J2        LTR            LTR
8995    chr1.70941532.70942549          MLT1J2        LTR            LTR
8996    chr1.70941532.70942549             L2c       LINE           LINE
8997    chr1.70961426.70961697            <NA>       <NA>           <NA>
8998    chr1.70985533.70986106          LTR3B_        LTR            LTR
8999    chr1.70985533.70986106          MER41A        LTR            LTR
9000    chr1.71013568.71014439           AluSp       SINE           SINE
9001    chr1.71013568.71014439            L1M5       LINE           LINE
9002    chr1.71013568.71014439           MER33        DNA            DNA
9003    chr1.71019195.71019681            <NA>       <NA>           <NA>
9004    chr1.71046402.71048287          (GCG)n      Other  Simple_repeat
9005    chr1.71049883.71050281            <NA>       <NA>           <NA>
9006    chr1.71054344.71054999           AluJb       SINE           SINE
9007    chr1.71080240.71081497            <NA>       <NA>           <NA>
9008    chr1.71086230.71086666     FordPrefect        DNA            DNA
9009    chr1.71089992.71090242            <NA>       <NA>           <NA>
9010    chr1.71228796.71229389            <NA>       <NA>           <NA>
9011    chr1.71240498.71240992             MIR       SINE           SINE
9012    chr1.71240498.71240992         LTR86B2        LTR            LTR
9013    chr1.71307578.71307817          LTR67B        LTR            LTR
9014    chr1.71324719.71325337      MLT1F1-int        LTR            LTR
9015    chr1.71324719.71325337          MLT1F1        LTR            LTR
9016    chr1.71445739.71446062            <NA>       <NA>           <NA>
9017    chr1.71462948.71463718             L2a       LINE           LINE
9018    chr1.71462948.71463718           MLT1I        LTR            LTR
9019    chr1.71466536.71466965             L2a       LINE           LINE
9020    chr1.71521601.71522102            <NA>       <NA>           <NA>
9021    chr1.71542232.71542616            MIR3       SINE           SINE
9022    chr1.71557116.71557539            <NA>       <NA>           <NA>
9023    chr1.71638213.71638528            MIRb       SINE           SINE
9024    chr1.71738236.71738717            <NA>       <NA>           <NA>
9025    chr1.71776915.71777490         MER103C        DNA            DNA
9026    chr1.71776915.71777490             MIR       SINE           SINE
9027    chr1.71786334.71786773           MLT1G        LTR            LTR
9028    chr1.71831869.71832449             L2b       LINE           LINE
9029    chr1.71831869.71832449         MamRTE1       LINE           LINE
9030    chr1.71834887.71835231           (CA)n      Other  Simple_repeat
9031    chr1.71834887.71835231           MLT1H        LTR            LTR
9032    chr1.71837014.71837532            MIRb       SINE           SINE
9033    chr1.71837014.71837532             L3b       LINE           LINE
9034    chr1.71861102.71861520             MIR       SINE           SINE
9035    chr1.71973980.71974230            <NA>       <NA>           <NA>
9036    chr1.71987134.71987536            <NA>       <NA>           <NA>
9037    chr1.72000722.72001229          MER61E        LTR            LTR
9038    chr1.72010206.72010537            <NA>       <NA>           <NA>
9039    chr1.72011747.72012020             L2c       LINE           LINE
9040    chr1.72062580.72062873            <NA>       <NA>           <NA>
9041    chr1.72177838.72178798            (T)n      Other  Simple_repeat
9042    chr1.72177838.72178798         L1PREC2       LINE           LINE
9043    chr1.72282126.72285331            (T)n      Other  Simple_repeat
9044    chr1.72282126.72285331        (CCTCC)n      Other  Simple_repeat
9045    chr1.72282126.72285331          (CCT)n      Other  Simple_repeat
9046    chr1.72282126.72285331          (GGC)n      Other  Simple_repeat
9047    chr1.72282126.72285331          (CAG)n      Other  Simple_repeat
9048    chr1.72282126.72285331          A-rich      Other Low_complexity
9049    chr1.72397852.72398161            <NA>       <NA>           <NA>
9050    chr1.72498383.72498795         MamTip3        DNA            DNA
9051    chr1.72526997.72527478            <NA>       <NA>           <NA>
9052    chr1.72557369.72557861         OldhAT1        DNA            DNA
9053    chr1.72557369.72557861           LTR50        LTR            LTR
9054    chr1.72600940.72601455           L1MB7       LINE           LINE
9055    chr1.72600940.72601455              L2       LINE           LINE
9056    chr1.72600940.72601455           AluJb       SINE           SINE
9057    chr1.72623321.72623753           LTR50        LTR            LTR
9058    chr1.72636718.72636981  HERVIP10FH-int        LTR            LTR
9059    chr1.72724865.72725691          L1PA13       LINE           LINE
9060    chr1.72777765.72778210            <NA>       <NA>           <NA>
9061    chr1.72827094.72827752             L2c       LINE           LINE
9062    chr1.72845360.72845814           LTR35        LTR            LTR
9063    chr1.72851698.72851960     MamGypsy2-I        LTR            LTR
9064    chr1.72851698.72851960     MamGypsy2-I        LTR            LTR
9065    chr1.72915515.72916014           (GT)n      Other  Simple_repeat
9066    chr1.72986449.72986931            <NA>       <NA>           <NA>
9067    chr1.73033789.73034588            <NA>       <NA>           <NA>
9068    chr1.73097791.73098264            <NA>       <NA>           <NA>
9069    chr1.73144216.73144733            <NA>       <NA>           <NA>
9070    chr1.73300749.73301451          MER67A        LTR            LTR
9071    chr1.73300749.73301451           MLT1I        LTR            LTR
9072    chr1.73411570.73412239            <NA>       <NA>           <NA>
9073    chr1.73592933.73594111            MIR3       SINE           SINE
9074    chr1.73604741.73605033            <NA>       <NA>           <NA>
9075    chr1.73673606.73674749             L2a       LINE           LINE
9076    chr1.73943320.73943640            <NA>       <NA>           <NA>
9077    chr1.73979757.73981227            MIRb       SINE           SINE
9078    chr1.73998291.73999018          MER5A1        DNA            DNA
9079    chr1.74004557.74004965            <NA>       <NA>           <NA>
9080    chr1.74061574.74062015          L1PA15       LINE           LINE
9081    chr1.74061574.74062015           AluJb       SINE           SINE
9082    chr1.74075305.74076025           AluSx       SINE           SINE
9083    chr1.74075305.74076025           MLT1J        LTR            LTR
9084    chr1.74194079.74194201           AluJo       SINE           SINE
9085    chr1.74197886.74198759            <NA>       <NA>           <NA>
9086    chr1.74205069.74205713              L3       LINE           LINE
9087    chr1.74234962.74235602            <NA>       <NA>           <NA>
9088    chr1.74245238.74245951        AmnSINE1       SINE           SINE
9089    chr1.74313408.74313767            <NA>       <NA>           <NA>
9090    chr1.74319066.74319303          MLT1F2        LTR            LTR
9091    chr1.74323876.74324465              L2       LINE           LINE
9092    chr1.74323876.74324465          MER54A        LTR            LTR
9093    chr1.74334234.74334655             MIR       SINE           SINE
9094    chr1.74363104.74363676            <NA>       <NA>           <NA>
9095    chr1.74388849.74389189            <NA>       <NA>           <NA>
9096    chr1.74392982.74393139            <NA>       <NA>           <NA>
9097    chr1.74396714.74397471    HERVP71A-int        LTR            LTR
9098    chr1.74396714.74397471          LTR18B        LTR            LTR
9099    chr1.74396714.74397471         GA-rich      Other Low_complexity
9100    chr1.74396714.74397471    HERVP71A-int        LTR            LTR
9101    chr1.74412275.74412751          MLT1H2        LTR            LTR
9102    chr1.74412275.74412751           AluSz       SINE           SINE
9103    chr1.74415885.74416353            <NA>       <NA>           <NA>
9104    chr1.74420388.74421342           MER85        DNA            DNA
9105    chr1.74422491.74423096            MIRb       SINE           SINE
9106    chr1.74422491.74423096         X9_LINE       LINE           LINE
9107    chr1.74425791.74426941         (TCTT)n      Other  Simple_repeat
9108    chr1.74463466.74464404            MIR3       SINE           SINE
9109    chr1.74463466.74464404             L3b       LINE           LINE
9110    chr1.74470125.74471341            <NA>       <NA>           <NA>
9111    chr1.74474362.74475145           (CA)n      Other  Simple_repeat
9112    chr1.74502516.74502846            MIRb       SINE           SINE
9113    chr1.74504061.74504496            <NA>       <NA>           <NA>
9114    chr1.74508571.74508814            MIRb       SINE           SINE
9115    chr1.74512396.74512947             L2a       LINE           LINE
9116    chr1.74522163.74522543          UCON25      Other        Unknown
9117    chr1.74527560.74528318             L2c       LINE           LINE
9118    chr1.74571916.74572255            <NA>       <NA>           <NA>
9119    chr1.74610036.74610454             L2a       LINE           LINE
9120    chr1.74623689.74624437             L2c       LINE           LINE
9121    chr1.74628038.74628402    Tigger2b_Pri        DNA            DNA
9122    chr1.74629400.74629675            <NA>       <NA>           <NA>
9123    chr1.74650581.74650939          MER44B        DNA            DNA
9124    chr1.74650581.74650939           (TG)n      Other  Simple_repeat
9125    chr1.74650581.74650939          A-rich      Other Low_complexity
9126    chr1.74673398.74674171           (AC)n      Other  Simple_repeat
9127    chr1.74689927.74690524             L2c       LINE           LINE
9128    chr1.74693365.74693783             L2a       LINE           LINE
9129    chr1.74712881.74713319            <NA>       <NA>           <NA>
9130    chr1.74713933.74714139            MIRb       SINE           SINE
9131    chr1.74717497.74717953             MIR       SINE           SINE
9132    chr1.74717497.74717953             L2c       LINE           LINE
9133    chr1.74729926.74730392           (CT)n      Other  Simple_repeat
9134    chr1.74732555.74733899          G-rich      Other Low_complexity
9135    chr1.74732555.74733899          MER5A1        DNA            DNA
9136    chr1.74732555.74733899              L3       LINE           LINE
9137    chr1.74753234.74753488            <NA>       <NA>           <NA>
9138    chr1.74765198.74765688          MER91C        DNA            DNA
9139    chr1.74765198.74765688          A-rich      Other Low_complexity
9140    chr1.74802837.74803454           AluSg       SINE           SINE
9141    chr1.74802837.74803454           MER85        DNA            DNA
9142    chr1.74812678.74813111           LTR78        LTR            LTR
9143    chr1.74829425.74829887            <NA>       <NA>           <NA>
9144    chr1.74834222.74834526            <NA>       <NA>           <NA>
9145    chr1.74937276.74937630            <NA>       <NA>           <NA>
9146    chr1.74964442.74965081            <NA>       <NA>           <NA>
9147    chr1.74965821.74966009            <NA>       <NA>           <NA>
9148    chr1.75053369.75053649           LTR41        LTR            LTR
9149    chr1.75084043.75084526          MER44C        DNA            DNA
9150    chr1.75092176.75092633          MER61C        LTR            LTR
9151    chr1.75092176.75092633          LTR27B        LTR            LTR
9152    chr1.75101735.75102020         MamRTE1       LINE           LINE
9153    chr1.75130242.75130739            <NA>       <NA>           <NA>
9154    chr1.75130837.75131276            <NA>       <NA>           <NA>
9155    chr1.75136212.75136876            <NA>       <NA>           <NA>
9156    chr1.75137190.75137573            <NA>       <NA>           <NA>
9157    chr1.75203574.75204083            (T)n      Other  Simple_repeat
9158    chr1.75233285.75233728           L1PB4       LINE           LINE
9159    chr1.75265661.75266168          L1MA4A       LINE           LINE
9160    chr1.75291996.75292635            AluY       SINE           SINE
9161    chr1.75291996.75292635             L2b       LINE           LINE
9162    chr1.75328797.75329219   ERV3-16A3_LTR        LTR            LTR
9163    chr1.75328797.75329219          L1PA15       LINE           LINE
9164    chr1.75328797.75329219          LTR16A        LTR            LTR
9165    chr1.75333759.75334077             L2a       LINE           LINE
9166    chr1.75345584.75346266            <NA>       <NA>           <NA>
9167    chr1.75371990.75372237           AluSz       SINE           SINE
9168    chr1.75375809.75376387          L1PA17       LINE           LINE
9169    chr1.75375809.75376387           L1PA2       LINE           LINE
9170    chr1.75412525.75413058          MER44D        DNA            DNA
9171    chr1.75424252.75424641           AluSz       SINE           SINE
9172    chr1.75427611.75428316             MIR       SINE           SINE
9173    chr1.75427611.75428316           MLT1I        LTR            LTR
9174    chr1.75430476.75430858           MER5A        DNA            DNA
9175    chr1.75449965.75450721           AluSc       SINE           SINE
9176    chr1.75449965.75450721          L1PA16       LINE           LINE
9177    chr1.75470334.75470910             L2c       LINE           LINE
9178    chr1.75502845.75503898            MIRc       SINE           SINE
9179    chr1.75502845.75503898            MSTA        LTR            LTR
9180    chr1.75514182.75514537            <NA>       <NA>           <NA>
9181    chr1.75521593.75522987            <NA>       <NA>           <NA>
9182    chr1.75533095.75533621          MER65A        LTR            LTR
9183    chr1.75614526.75617049           (AC)n      Other  Simple_repeat
9184    chr1.75614526.75617049           (GA)n      Other  Simple_repeat
9185    chr1.75614526.75617049        (CGGCT)n      Other  Simple_repeat
9186    chr1.75614526.75617049          (TGC)n      Other  Simple_repeat
9187    chr1.75614526.75617049      (CCACCCC)n      Other  Simple_repeat
9188    chr1.75632075.75632617            MIR3       SINE           SINE
9189    chr1.75672269.75673237            L1M1       LINE           LINE
9190    chr1.75724020.75725044        (CCGCC)n      Other  Simple_repeat
9191    chr1.75765629.75766266         GA-rich      Other Low_complexity
9192    chr1.75767875.75768299       LTR37-int        LTR            LTR
9193    chr1.75767875.75768299           AluJb       SINE           SINE
9194    chr1.75775655.75775993            AluY       SINE           SINE
9195    chr1.75775655.75775993           L1MEd       LINE           LINE
9196    chr1.75785726.75786792            LTR8        LTR            LTR
9197    chr1.75785726.75786792           AluJo       SINE           SINE
9198    chr1.75811580.75811957            <NA>       <NA>           <NA>
9199    chr1.75842622.75842973           LTR13        LTR            LTR
9200    chr1.75854987.75855356          AluJr4       SINE           SINE
9201    chr1.75854987.75855356           MLT1C        LTR            LTR
9202    chr1.75901235.75901810           L1MA4       LINE           LINE
9203    chr1.75908641.75909296           L1M3f       LINE           LINE
9204    chr1.75910529.75911142          FLAM_C       SINE           SINE
9205    chr1.75910529.75911142             L2c       LINE           LINE
9206    chr1.75964309.75964928             MIR       SINE           SINE
9207    chr1.75964309.75964928           MLT1C        LTR            LTR
9208    chr1.75964309.75964928           AluSz       SINE           SINE
9209    chr1.75964309.75964928           MLT1C        LTR            LTR
9210    chr1.75991307.75991887            MIRb       SINE           SINE
9211    chr1.75996037.75996510           (TG)n      Other  Simple_repeat
9212    chr1.75996037.75996510             MIR       SINE           SINE
9213    chr1.76013019.76013463            <NA>       <NA>           <NA>
9214    chr1.76021921.76022106            MIRb       SINE           SINE
9215    chr1.76023665.76024980      Charlie15a        DNA            DNA
9216    chr1.76023665.76024980          AluSz6       SINE           SINE
9217    chr1.76035198.76035525            <NA>       <NA>           <NA>
9218    chr1.76038390.76038768            MIRc       SINE           SINE
9219    chr1.76040133.76040683          MER61E        LTR            LTR
9220    chr1.76042658.76043150           AluSz       SINE           SINE
9221    chr1.76053008.76053407            <NA>       <NA>           <NA>
9222    chr1.76066405.76066876          LTR40b        LTR            LTR
9223    chr1.76068507.76068941             L2c       LINE           LINE
9224    chr1.76068507.76068941          MER58B        DNA            DNA
9225    chr1.76074300.76075422          G-rich      Other Low_complexity
9226    chr1.76086709.76087082            <NA>       <NA>           <NA>
9227    chr1.76090282.76090834              L2       LINE           LINE
9228    chr1.76121606.76122318            AluY       SINE           SINE
9229    chr1.76121606.76122318             L2a       LINE           LINE
9230    chr1.76142743.76143480           (GT)n      Other  Simple_repeat
9231    chr1.76154058.76154763            <NA>       <NA>           <NA>
9232    chr1.76155983.76156370           L1MC3       LINE           LINE
9233    chr1.76215738.76216064              L3       LINE           LINE
9234    chr1.76215738.76216064             L2a       LINE           LINE
9235    chr1.76238177.76238581             L2c       LINE           LINE
9236    chr1.76240158.76240742            MIRb       SINE           SINE
9237    chr1.76240158.76240742          MLT1J1        LTR            LTR
9238    chr1.76247105.76247812           L1PA8       LINE           LINE
9239    chr1.76254149.76255006          LTR54B        LTR            LTR
9240    chr1.76268415.76268844            <NA>       <NA>           <NA>
9241    chr1.76269177.76269602        L4_A_Mam       LINE           LINE
9242    chr1.76269177.76269602         MER102a        DNA            DNA
9243    chr1.76274379.76274969            <NA>       <NA>           <NA>
9244    chr1.76279095.76279771            <NA>       <NA>           <NA>
9245    chr1.76281396.76281635            <NA>       <NA>           <NA>
9246    chr1.76285691.76286244            ORSL        DNA            DNA
9247    chr1.76285691.76286244           (AC)n      Other  Simple_repeat
9248    chr1.76300149.76300563             MIR       SINE           SINE
9249    chr1.76303458.76303689          MER51A        LTR            LTR
9250    chr1.76314578.76315314            <NA>       <NA>           <NA>
9251    chr1.76330987.76331301          LTR67B        LTR            LTR
9252    chr1.76336963.76337477            <NA>       <NA>           <NA>
9253    chr1.76343463.76343789            <NA>       <NA>           <NA>
9254    chr1.76463244.76463854             L2a       LINE           LINE
9255    chr1.76463244.76463854           LTR33        LTR            LTR
9256    chr1.76501739.76502166           MLT1L        LTR            LTR
9257    chr1.76586027.76586392            <NA>       <NA>           <NA>
9258    chr1.76607551.76608041          MER21C        LTR            LTR
9259    chr1.76607551.76608041          MER91A        DNA            DNA
9260    chr1.76626096.76626679          (AGC)n      Other  Simple_repeat
9261    chr1.76626096.76626679         Plat_L3       LINE           LINE
9262    chr1.76626096.76626679             L2a       LINE           LINE
9263    chr1.76727508.76727847            <NA>       <NA>           <NA>
9264    chr1.76764619.76765357            <NA>       <NA>           <NA>
9265    chr1.76771783.76772213            <NA>       <NA>           <NA>
9266    chr1.76830409.76830728            <NA>       <NA>           <NA>
9267    chr1.76862567.76862750             L2a       LINE           LINE
9268    chr1.76867462.76869288          (GCA)n      Other  Simple_repeat
9269    chr1.76901245.76901591            <NA>       <NA>           <NA>
9270    chr1.76933312.76934099             L2a       LINE           LINE
9271    chr1.76933312.76934099        L4_B_Mam       LINE           LINE
9272    chr1.76933312.76934099            (A)n      Other  Simple_repeat
9273    chr1.76938919.76939707         MamRTE1       LINE           LINE
9274    chr1.76949501.76949774            MIR3       SINE           SINE
9275    chr1.76949501.76949774     MamGypsy2-I        LTR            LTR
9276    chr1.77039778.77040093            <NA>       <NA>           <NA>
9277    chr1.77063246.77063549           MARNA        DNA            DNA
9278    chr1.77081527.77082179           AluSc       SINE           SINE
9279    chr1.77081527.77082179          MER112        DNA            DNA
9280    chr1.77081527.77082179          MER112        DNA            DNA
9281    chr1.77089845.77090074            <NA>       <NA>           <NA>
9282    chr1.77120949.77121308            <NA>       <NA>           <NA>
9283    chr1.77126351.77126609           L1MC4       LINE           LINE
9284    chr1.77218742.77219919         (TTAT)n      Other  Simple_repeat
9285    chr1.77271765.77272403             L2b       LINE           LINE
9286    chr1.77281576.77283318       (GTGTGT)n      Other  Simple_repeat
9287    chr1.77281576.77283318        (GCGCG)n      Other  Simple_repeat
9288    chr1.77313500.77313903         MER102c        DNA            DNA
9289    chr1.77322119.77322651      Charlie23a        DNA            DNA
9290    chr1.77322119.77322651            MIRc       SINE           SINE
9291    chr1.77347702.77348003            <NA>       <NA>           <NA>
9292    chr1.77370810.77371712            <NA>       <NA>           <NA>
9293    chr1.77375607.77375894            MIRc       SINE           SINE
9294    chr1.77378366.77379346           AluSp       SINE           SINE
9295    chr1.77378366.77379346           L1MEc       LINE           LINE
9296    chr1.77412502.77413147            <NA>       <NA>           <NA>
9297    chr1.77413159.77414281             L2b       LINE           LINE
9298    chr1.77413159.77414281             MIR       SINE           SINE
9299    chr1.77413159.77414281          (TCT)n      Other  Simple_repeat
9300    chr1.77413159.77414281          A-rich      Other Low_complexity
9301    chr1.77423127.77423886            AluY       SINE           SINE
9302    chr1.77423127.77423886           L1MCa       LINE           LINE
9303    chr1.77424018.77424676           L1MCa       LINE           LINE
9304    chr1.77424018.77424676           AluJo       SINE           SINE
9305    chr1.77424018.77424676           L1MCa       LINE           LINE
9306    chr1.77511364.77511847            <NA>       <NA>           <NA>
9307    chr1.77515423.77515825           AluJr       SINE           SINE
9308    chr1.77533491.77534004           AluSz       SINE           SINE
9309    chr1.77533491.77534004          MER5A1        DNA            DNA
9310    chr1.77536837.77537171            <NA>       <NA>           <NA>
9311    chr1.77539287.77540088            <NA>       <NA>           <NA>
9312    chr1.77544052.77545586        Tigger3b        DNA            DNA
9313    chr1.77544052.77545586           (AC)n      Other  Simple_repeat
9314    chr1.77544052.77545586          L1ME4b       LINE           LINE
9315    chr1.77544052.77545586         (TCTT)n      Other  Simple_repeat
9316    chr1.77544052.77545586            L1MC       LINE           LINE
9317    chr1.77545722.77546305            <NA>       <NA>           <NA>
9318    chr1.77562686.77563067             MIR       SINE           SINE
9319    chr1.77565362.77565957            <NA>       <NA>           <NA>
9320    chr1.77605185.77605806           L1MA9       LINE           LINE
9321    chr1.77638970.77639371         (GGTA)n      Other  Simple_repeat
9322    chr1.77638970.77639371         (CAGA)n      Other  Simple_repeat
9323    chr1.77651573.77651995           L1MB3       LINE           LINE
9324    chr1.77651573.77651995          AluSx3       SINE           SINE
9325    chr1.77665060.77665448            <NA>       <NA>           <NA>
9326    chr1.77669027.77669342        (TTCTC)n      Other  Simple_repeat
9327    chr1.77682139.77683980          (CGC)n      Other  Simple_repeat
9328    chr1.77682139.77683980          (GGC)n      Other  Simple_repeat
9329    chr1.77682139.77683980             L2a       LINE           LINE
9330    chr1.77739802.77740238          MER105        DNA            DNA
9331    chr1.77742260.77742439            MIRb       SINE           SINE
9332    chr1.77742260.77742439           MER20        DNA            DNA
9333    chr1.77758933.77760132            <NA>       <NA>           <NA>
9334    chr1.77779510.77780297              5S      Other           rRNA
9335    chr1.77798158.77798418           MLT1C        LTR            LTR
9336    chr1.77798158.77798418           THE1B        LTR            LTR
9337    chr1.77824200.77824463          AluJr4       SINE           SINE
9338    chr1.77825236.77825687           AluSz       SINE           SINE
9339    chr1.77832072.77833515             L2c       LINE           LINE
9340    chr1.77834761.77835310            <NA>       <NA>           <NA>
9341    chr1.77888057.77889988          (CGG)n      Other  Simple_repeat
9342    chr1.77899737.77900336             L2a       LINE           LINE
9343    chr1.77899737.77900336             L2c       LINE           LINE
9344    chr1.77948875.77949506            <NA>       <NA>           <NA>
9345    chr1.77978066.77979693          (CCA)n      Other  Simple_repeat
9346    chr1.77988024.77988648          AluJr4       SINE           SINE
9347    chr1.77988024.77988648             L2a       LINE           LINE
9348    chr1.77998520.77998987           AluJb       SINE           SINE
9349    chr1.78004074.78005423           (TC)n      Other  Simple_repeat
9350    chr1.78045994.78046691            <NA>       <NA>           <NA>
9351    chr1.78049388.78049856           AluSx       SINE           SINE
9352    chr1.78049388.78049856            MIRc       SINE           SINE
9353    chr1.78068796.78069306            <NA>       <NA>           <NA>
9354    chr1.78070678.78071130            <NA>       <NA>           <NA>
9355    chr1.78082150.78082951             MIR       SINE           SINE
9356    chr1.78082150.78082951           L1MC4       LINE           LINE
9357    chr1.78101301.78102355          MER112        DNA            DNA
9358    chr1.78113916.78114855       Tigger13a        DNA            DNA
9359    chr1.78113916.78114855           L1MC1       LINE           LINE
9360    chr1.78145162.78145516            <NA>       <NA>           <NA>
9361    chr1.78171850.78172187          LTR33C        LTR            LTR
9362    chr1.78176408.78176727            L1M5       LINE           LINE
9363    chr1.78176408.78176727           LTR79        LTR            LTR
9364    chr1.78339447.78340740          A-rich      Other Low_complexity
9365    chr1.78339447.78340740          A-rich      Other Low_complexity
9366    chr1.78339447.78340740             L2b       LINE           LINE
9367    chr1.78339447.78340740          AluSx3       SINE           SINE
9368    chr1.78370465.78370669             L2c       LINE           LINE
9369    chr1.78437162.78437962             L2c       LINE           LINE
9370    chr1.78437162.78437962       MamRep434        DNA            DNA
9371    chr1.78437162.78437962           (TA)n      Other  Simple_repeat
9372    chr1.78490732.78492063            <NA>       <NA>           <NA>
9373    chr1.78606025.78606737           AluJb       SINE           SINE
9374    chr1.78606025.78606737             L2c       LINE           LINE
9375    chr1.78617451.78618039          L1PA17       LINE           LINE
9376    chr1.78617451.78618039           LTR41        LTR            LTR
9377    chr1.78658893.78659438           L1MC5       LINE           LINE
9378    chr1.78658893.78659438             L2a       LINE           LINE
9379    chr1.78831751.78832026           MLT1L        LTR            LTR
9380    chr1.78833309.78833815              L2       LINE           LINE
9381    chr1.78833309.78833815              L2       LINE           LINE
9382    chr1.78840553.78841488            <NA>       <NA>           <NA>
9383    chr1.78876105.78876385       HERVH-int        LTR            LTR
9384    chr1.78884653.78885384             MIR       SINE           SINE
9385    chr1.79006076.79007037            <NA>       <NA>           <NA>
9386    chr1.79043602.79043866            <NA>       <NA>           <NA>
9387    chr1.79045075.79045502          LTR1A2        LTR            LTR
9388    chr1.79079817.79080335        MamSINE1       SINE           SINE
9389    chr1.79089044.79089203       (TACATA)n      Other  Simple_repeat
9390    chr1.79089044.79089203           AluJb       SINE           SINE
9391    chr1.79105390.79105854       MLT1H-int        LTR            LTR
9392    chr1.79105390.79105854           MLT1H        LTR            LTR
9393    chr1.79160980.79161618            <NA>       <NA>           <NA>
9394    chr1.79193157.79193728            <NA>       <NA>           <NA>
9395    chr1.79198916.79199386            <NA>       <NA>           <NA>
9396    chr1.79323128.79323758             L2c       LINE           LINE
9397    chr1.79353016.79353632       (CTTTCC)n      Other  Simple_repeat
9398    chr1.79353016.79353632       MLT1A-int        LTR            LTR
9399    chr1.79353016.79353632       MLT1A-int        LTR            LTR
9400    chr1.79353016.79353632           MLT1A        LTR            LTR
9401    chr1.79454512.79454712            <NA>       <NA>           <NA>
9402    chr1.79603841.79604431          MER65D        LTR            LTR
9403    chr1.79603841.79604431          LTR21A        LTR            LTR
9404    chr1.79646972.79647411            <NA>       <NA>           <NA>
9405    chr1.79652363.79652874            <NA>       <NA>           <NA>
9406    chr1.79702451.79702954         LTR5_Hs        LTR            LTR
9407    chr1.79711188.79711486       MLT1C-int        LTR            LTR
9408    chr1.79711188.79711486       MLT1C-int        LTR            LTR
9409    chr1.79791367.79791726            <NA>       <NA>           <NA>
9410    chr1.79792229.79792631          LTR45C        LTR            LTR
9411    chr1.79811090.79811609            <NA>       <NA>           <NA>
9412    chr1.79859289.79860128           LTR1B        LTR            LTR
9413    chr1.79859289.79860128          MER50B        LTR            LTR
9414    chr1.79859289.79860128           L1MC5       LINE           LINE
9415    chr1.79859289.79860128          L1ME3B       LINE           LINE
9416    chr1.79899845.79900346            <NA>       <NA>           <NA>
9417    chr1.79977690.79978248             L2a       LINE           LINE
9418    chr1.79981860.79982600            <NA>       <NA>           <NA>
9419    chr1.80053923.80054476          LTR12C        LTR            LTR
9420    chr1.80053923.80054476     HERVL18-int        LTR            LTR
9421    chr1.80053923.80054476     HERVL18-int        LTR            LTR
9422    chr1.80053923.80054476          LTR18A        LTR            LTR
9423    chr1.80064370.80064779             MIR       SINE           SINE
9424    chr1.80171225.80171582            <NA>       <NA>           <NA>
9425    chr1.80218049.80218369            <NA>       <NA>           <NA>
9426    chr1.80225286.80225666             L2b       LINE           LINE
9427    chr1.80258505.80259060           L1MCc       LINE           LINE
9428    chr1.80258505.80259060           (AC)n      Other  Simple_repeat
9429    chr1.80367046.80367377             L2a       LINE           LINE
9430    chr1.80374877.80375160            <NA>       <NA>           <NA>
9431    chr1.80375512.80376094             L2c       LINE           LINE
9432    chr1.80375512.80376094           (CA)n      Other  Simple_repeat
9433    chr1.80375512.80376094             MIR       SINE           SINE
9434    chr1.80444938.80445368            <NA>       <NA>           <NA>
9435    chr1.80447357.80447839             L2a       LINE           LINE
9436    chr1.80473723.80474118           L1MEc       LINE           LINE
9437    chr1.80498517.80499057            <NA>       <NA>           <NA>
9438    chr1.80509980.80510471          MLT1G1        LTR            LTR
9439    chr1.80542183.80542633            MIRc       SINE           SINE
9440    chr1.80656144.80656443            <NA>       <NA>           <NA>
9441    chr1.80759353.80759940     MamGypLTR1a        LTR            LTR
9442    chr1.80759353.80759940            MIRc       SINE           SINE
9443    chr1.80759353.80759940          MER31B        LTR            LTR
9444    chr1.80769203.80769559            <NA>       <NA>           <NA>
9445    chr1.80881389.80881941          MER45B        DNA            DNA
9446    chr1.80881389.80881941             L2a       LINE           LINE
9447    chr1.80882637.80883044          LTR90A        LTR            LTR
9448    chr1.80994946.80995558           LTR78        LTR            LTR
9449    chr1.80994946.80995558          LTR78B        LTR            LTR
9450    chr1.80997247.80997415        Arthur1B        DNA            DNA
9451    chr1.81029037.81029721             L2a       LINE           LINE
9452    chr1.81029037.81029721           MER20        DNA            DNA
9453    chr1.81029037.81029721             L2a       LINE           LINE
9454    chr1.81029037.81029721           AluSc       SINE           SINE
9455    chr1.81113051.81113555             L2a       LINE           LINE
9456    chr1.81129291.81129812             L2c       LINE           LINE
9457    chr1.81150924.81151773         OldhAT1        DNA            DNA
9458    chr1.81158664.81158996            <NA>       <NA>           <NA>
9459    chr1.81174795.81175383           L1M2a       LINE           LINE
9460    chr1.81179299.81179577    Tigger1a_Art        DNA            DNA
9461    chr1.81224225.81224758          L1MC5a       LINE           LINE
9462    chr1.81224225.81224758             L2b       LINE           LINE
9463    chr1.81259149.81259899             L2a       LINE           LINE
9464    chr1.81303912.81304555         MamTip2        DNA            DNA
9465    chr1.81303912.81304555             MIR       SINE           SINE
9466    chr1.81305842.81306446           (CT)n      Other  Simple_repeat
9467    chr1.81314393.81314741            <NA>       <NA>           <NA>
9468    chr1.81317123.81317583           MER20        DNA            DNA
9469    chr1.81317123.81317583             L2b       LINE           LINE
9470    chr1.81345144.81345390          MLT1F1        LTR            LTR
9471    chr1.81409174.81409599            <NA>       <NA>           <NA>
9472    chr1.81410463.81410665         UCON105      Other        Unknown
9473    chr1.81414455.81414748        AmnSINE1       SINE           SINE
9474    chr1.81414455.81414748        AmnSINE1       SINE           SINE
9475    chr1.81424021.81424742            <NA>       <NA>           <NA>
9476    chr1.81440877.81441054              L2       LINE           LINE
9477    chr1.81478186.81478589            <NA>       <NA>           <NA>
9478    chr1.81493261.81493936            <NA>       <NA>           <NA>
9479    chr1.81518097.81518383            <NA>       <NA>           <NA>
9480    chr1.81539330.81539506       MLT1J-int        LTR            LTR
9481    chr1.81549650.81549813            <NA>       <NA>           <NA>
9482    chr1.81557232.81557950         (AGAA)n      Other  Simple_repeat
9483    chr1.81557232.81557950             L2b       LINE           LINE
9484    chr1.81582739.81583029      (ACAACAC)n      Other  Simple_repeat
9485    chr1.81635625.81636255          MLT1A0        LTR            LTR
9486    chr1.81635625.81636255             L2a       LINE           LINE
9487    chr1.81635625.81636255             L2a       LINE           LINE
9488    chr1.81635625.81636255         (TATG)n      Other  Simple_repeat
9489    chr1.81670050.81670768           AluJb       SINE           SINE
9490    chr1.81680084.81680252            <NA>       <NA>           <NA>
9491    chr1.81681403.81681883            <NA>       <NA>           <NA>
9492    chr1.81682217.81683015          AluSx1       SINE           SINE
9493    chr1.81695600.81696139           AluSz       SINE           SINE
9494    chr1.81699316.81699675            <NA>       <NA>           <NA>
9495    chr1.81702977.81703199            <NA>       <NA>           <NA>
9496    chr1.81706679.81707628             L2b       LINE           LINE
9497    chr1.81731729.81732258             L2b       LINE           LINE
9498    chr1.81739437.81740079          MER20B        DNA            DNA
9499    chr1.81739437.81740079       (ACACAT)n      Other  Simple_repeat
9500    chr1.81800022.81803825         (TCTC)n      Other  Simple_repeat
9501    chr1.81832596.81832876            <NA>       <NA>           <NA>
9502    chr1.81833739.81834503       (TTTTTG)n      Other  Simple_repeat
9503    chr1.81833739.81834503        (GTTTT)n      Other  Simple_repeat
9504    chr1.81874641.81875209        (TGTCT)n      Other  Simple_repeat
9505    chr1.81874641.81875209           AluSx       SINE           SINE
9506    chr1.81876828.81877694             MIR       SINE           SINE
9507    chr1.81887816.81888350            <NA>       <NA>           <NA>
9508    chr1.81920216.81920788           LTR16        LTR            LTR
9509    chr1.81921482.81922286            <NA>       <NA>           <NA>
9510    chr1.81954338.81955035            <NA>       <NA>           <NA>
9511    chr1.81974249.81974761            <NA>       <NA>           <NA>
9512    chr1.81989356.81989799            <NA>       <NA>           <NA>
9513    chr1.81997930.81998463            MIRb       SINE           SINE
9514    chr1.82018425.82018603            <NA>       <NA>           <NA>
9515    chr1.82062422.82062742            <NA>       <NA>           <NA>
9516    chr1.82064546.82065084             L2b       LINE           LINE
9517    chr1.82064546.82065084             L2b       LINE           LINE
9518    chr1.82064546.82065084             L2b       LINE           LINE
9519    chr1.82064546.82065084             L2a       LINE           LINE
9520    chr1.82066067.82066334           LTR16        LTR            LTR
9521    chr1.82086770.82087161            <NA>       <NA>           <NA>
9522    chr1.82177058.82177466            MIR3       SINE           SINE
9523    chr1.82269331.82269792          UCON48      Other        Unknown
9524    chr1.82284303.82284670           AluJr       SINE           SINE
9525    chr1.82317747.82317961          L1ME3A       LINE           LINE
9526    chr1.82317747.82317961            MSTD        LTR            LTR
9527    chr1.82318835.82319415           MLT1B        LTR            LTR
9528    chr1.82319579.82319966            <NA>       <NA>           <NA>
9529    chr1.82330210.82330843           MLT1O        LTR            LTR
9530    chr1.82330210.82330843          LTR28C        LTR            LTR
9531    chr1.82348505.82349014          AluSx3       SINE           SINE
9532    chr1.82348505.82349014        (AAACA)n      Other  Simple_repeat
9533    chr1.82348505.82349014             MIR       SINE           SINE
9534    chr1.82377257.82377706           L1ME2       LINE           LINE
9535    chr1.82377257.82377706           L1ME2       LINE           LINE
9536    chr1.82388740.82388975           MER5A        DNA            DNA
9537    chr1.82405339.82405563            <NA>       <NA>           <NA>
9538    chr1.82418024.82418576            MIRb       SINE           SINE
9539    chr1.82418024.82418576             L2c       LINE           LINE
9540    chr1.82418024.82418576             L2b       LINE           LINE
9541    chr1.82485589.82486115            <NA>       <NA>           <NA>
9542    chr1.82517667.82517932            <NA>       <NA>           <NA>
9543    chr1.82565179.82565848            <NA>       <NA>           <NA>
9544    chr1.82614078.82614537             L2a       LINE           LINE
9545    chr1.82631995.82632778            <NA>       <NA>           <NA>
9546    chr1.82795592.82796082           MER39        LTR            LTR
9547    chr1.82838115.82838452            <NA>       <NA>           <NA>
9548    chr1.82845352.82845798            <NA>       <NA>           <NA>
9549    chr1.82867774.82868650           AluJo       SINE           SINE
9550    chr1.82867774.82868650         Plat_L3       LINE           LINE
9551    chr1.82867774.82868650         Plat_L3       LINE           LINE
9552    chr1.82870775.82870991            <NA>       <NA>           <NA>
9553    chr1.82920136.82921271            <NA>       <NA>           <NA>
9554    chr1.82978611.82979482            <NA>       <NA>           <NA>
9555    chr1.82991462.82992100            MIRb       SINE           SINE
9556    chr1.83012858.83013250          MER45C        DNA            DNA
9557    chr1.83012858.83013250           L1MEd       LINE           LINE
9558    chr1.83017819.83018495            <NA>       <NA>           <NA>
9559    chr1.83033713.83034039           MLT1A        LTR            LTR
9560    chr1.83099535.83099805            MIRc       SINE           SINE
9561    chr1.83101237.83101712           (CA)n      Other  Simple_repeat
9562    chr1.83101237.83101712             L2c       LINE           LINE
9563    chr1.83102417.83103258            <NA>       <NA>           <NA>
9564    chr1.83119797.83120517              L2       LINE           LINE
9565    chr1.83119797.83120517           (AT)n      Other  Simple_repeat
9566    chr1.83119797.83120517           (TG)n      Other  Simple_repeat
9567    chr1.83119797.83120517           (AT)n      Other  Simple_repeat
9568    chr1.83151192.83151427            <NA>       <NA>           <NA>
9569    chr1.83181637.83182957           L1PA2       LINE           LINE
9570    chr1.83272538.83272794             L2a       LINE           LINE
9571    chr1.83323706.83324084           MLT1J        LTR            LTR
9572    chr1.83508626.83509053            <NA>       <NA>           <NA>
9573    chr1.83559282.83559942            <NA>       <NA>           <NA>
9574    chr1.83562673.83563009         LTR16E2        LTR            LTR
9575    chr1.83609649.83609950             MIR       SINE           SINE
9576    chr1.83636891.83637865          MER45A        DNA            DNA
9577    chr1.83636891.83637865          A-rich      Other Low_complexity
9578    chr1.83636891.83637865            MIRc       SINE           SINE
9579    chr1.83636891.83637865            MIRc       SINE           SINE
9580    chr1.83692420.83693744            <NA>       <NA>           <NA>
9581    chr1.83791851.83792273            <NA>       <NA>           <NA>
9582    chr1.83822254.83822561          MER74A        LTR            LTR
9583    chr1.83828153.83829012             L2b       LINE           LINE
9584    chr1.83828153.83829012             L2b       LINE           LINE
9585    chr1.83833788.83834256      MamRep1151      Other           LTR?
9586    chr1.83857135.83857380            <NA>       <NA>           <NA>
9587    chr1.83860473.83861167            <NA>       <NA>           <NA>
9588    chr1.83901632.83901960             L2a       LINE           LINE
9589    chr1.83901632.83901960             L2a       LINE           LINE
9590    chr1.83918846.83919253          L1MEg2       LINE           LINE
9591    chr1.83918846.83919253          MLT1H1        LTR            LTR
9592    chr1.83920325.83920702              L2       LINE           LINE
9593    chr1.83920325.83920702         MER102c        DNA            DNA
9594    chr1.83931663.83931934            <NA>       <NA>           <NA>
9595    chr1.83998385.83999679            <NA>       <NA>           <NA>
9596    chr1.84077450.84079081          (CCG)n      Other  Simple_repeat
9597    chr1.84086287.84086499            <NA>       <NA>           <NA>
9598    chr1.84088973.84090144              L2       LINE           LINE
9599    chr1.84096127.84096432           L1ME3       LINE           LINE
9600    chr1.84103216.84103824           MLT1G        LTR            LTR
9601    chr1.84103216.84103824           MLT1G        LTR            LTR
9602    chr1.84117967.84118363          L1MA4A       LINE           LINE
9603    chr1.84124572.84125426          MLT1E2        LTR            LTR
9604    chr1.84156200.84157128           AluJo       SINE           SINE
9605    chr1.84156200.84157128     MamGypLTR3a        LTR            LTR
9606    chr1.84156200.84157128         MER102b        DNA            DNA
9607    chr1.84156200.84157128     MamGypLTR3a        LTR            LTR
9608    chr1.84174081.84174649             L2c       LINE           LINE
9609    chr1.84224158.84225043          L1MA4A       LINE           LINE
9610    chr1.84253822.84254265            <NA>       <NA>           <NA>
9611    chr1.84267449.84267820           MLT1F        LTR            LTR
9612    chr1.84298121.84299546           (CA)n      Other  Simple_repeat
9613    chr1.84344326.84344704            <NA>       <NA>           <NA>
9614    chr1.84355440.84356044           MER33        DNA            DNA
9615    chr1.84355440.84356044           MLT1J        LTR            LTR
9616    chr1.84365348.84366174       Tigger15a        DNA            DNA
9617    chr1.84365348.84366174            MIRc       SINE           SINE
9618    chr1.84371064.84371296          MER65B        LTR            LTR
9619    chr1.84371064.84371296          MER65B        LTR            LTR
9620    chr1.84412377.84413044            <NA>       <NA>           <NA>
9621    chr1.84427521.84428064           AluJo       SINE           SINE
9622    chr1.84433471.84434013        (TTGCT)n      Other  Simple_repeat
9623    chr1.84442316.84442522           (AT)n      Other  Simple_repeat
9624    chr1.84479207.84480288            MIRc       SINE           SINE
9625    chr1.84492408.84493001            MIRb       SINE           SINE
9626    chr1.84492408.84493001          MER20B        DNA            DNA
9627    chr1.84492408.84493001            MIRb       SINE           SINE
9628    chr1.84504867.84506896         (CCCG)n      Other  Simple_repeat
9629    chr1.84504867.84506896         GA-rich      Other Low_complexity
9630    chr1.84573839.84574794            MIRb       SINE           SINE
9631    chr1.84582955.84583886            MIRb       SINE           SINE
9632    chr1.84582955.84583886            LTR9        LTR            LTR
9633    chr1.84599126.84599772           AluJb       SINE           SINE
9634    chr1.84603211.84604402          LTR19C        LTR            LTR
9635    chr1.84603211.84604402       LTR25-int        LTR            LTR
9636    chr1.84604490.84604805       LTR25-int        LTR            LTR
9637    chr1.84604490.84604805         Tigger3        DNA            DNA
9638    chr1.84604490.84604805       LTR25-int        LTR            LTR
9639    chr1.84611872.84612264          LTR19C        LTR            LTR
9640    chr1.84611872.84612264           AluSc       SINE           SINE
9641    chr1.84617461.84617661            <NA>       <NA>           <NA>
9642    chr1.84619322.84619970          AluSx1       SINE           SINE
9643    chr1.84619322.84619970          Mam_R4       LINE           LINE
9644    chr1.84619322.84619970          L1ME4a       LINE           LINE
9645    chr1.84619322.84619970           MER4D        LTR            LTR
9646    chr1.84620672.84621206          G-rich      Other Low_complexity
9647    chr1.84632877.84633423             L2c       LINE           LINE
9648    chr1.84632877.84633423             L2c       LINE           LINE
9649    chr1.84634741.84635252           MER77        LTR            LTR
9650    chr1.84634741.84635252             L2c       LINE           LINE
9651    chr1.84642496.84643555           AluJb       SINE           SINE
9652    chr1.84642496.84643555           (CA)n      Other  Simple_repeat
9653    chr1.84642496.84643555            MIRc       SINE           SINE
9654    chr1.84645833.84646144         MamRTE1       LINE           LINE
9655    chr1.84689768.84691238         (CGCC)n      Other  Simple_repeat
9656    chr1.84689768.84691238       (CTGCGG)n      Other  Simple_repeat
9657    chr1.84689768.84691238          G-rich      Other Low_complexity
9658    chr1.84698211.84699102            <NA>       <NA>           <NA>
9659    chr1.84721185.84721618            <NA>       <NA>           <NA>
9660    chr1.84753444.84753943             L2a       LINE           LINE
9661    chr1.84758743.84759567           (AC)n      Other  Simple_repeat
9662    chr1.84772081.84773144            MIR3       SINE           SINE
9663    chr1.84782407.84782857            <NA>       <NA>           <NA>
9664    chr1.84796281.84796507            <NA>       <NA>           <NA>
9665    chr1.84797462.84798192           MLT1C        LTR            LTR
9666    chr1.84797462.84798192         (ATAG)n      Other  Simple_repeat
9667    chr1.84797462.84798192           (TA)n      Other  Simple_repeat
9668    chr1.84823672.84824214        UCON132b        DNA            DNA
9669    chr1.84824938.84825789             L2b       LINE           LINE
9670    chr1.84824938.84825789            MIR3       SINE           SINE
9671    chr1.84824938.84825789             L2b       LINE           LINE
9672    chr1.84843018.84843340            <NA>       <NA>           <NA>
9673    chr1.84847292.84847845            <NA>       <NA>           <NA>
9674    chr1.84851918.84852180           AluSc       SINE           SINE
9675    chr1.84854085.84854786             L2c       LINE           LINE
9676    chr1.84854085.84854786          A-rich      Other Low_complexity
9677    chr1.84870103.84871086             MIR       SINE           SINE
9678    chr1.84870103.84871086          (TTA)n      Other  Simple_repeat
9679    chr1.84870103.84871086             MIR       SINE           SINE
9680    chr1.84877567.84877891         Tigger8        DNA            DNA
9681    chr1.84877567.84877891             L2c       LINE           LINE
9682    chr1.84884822.84885778           MER20        DNA            DNA
9683    chr1.84884822.84885778          L1ME3G       LINE           LINE
9684    chr1.84884822.84885778        (CTTTC)n      Other  Simple_repeat
9685    chr1.84892462.84893600        (GCCCC)n      Other  Simple_repeat
9686    chr1.84907397.84907909          MER5A1        DNA            DNA
9687    chr1.84907397.84907909        (GAGCT)n      Other  Simple_repeat
9688    chr1.84907397.84907909           LTR78        LTR            LTR
9689    chr1.84929015.84929277            <NA>       <NA>           <NA>
9690    chr1.84936115.84936487            <NA>       <NA>           <NA>
9691    chr1.84940619.84940928            <NA>       <NA>           <NA>
9692    chr1.84944616.84945390            <NA>       <NA>           <NA>
9693    chr1.84945948.84946280          AluSz6       SINE           SINE
9694    chr1.84960355.84960913            <NA>       <NA>           <NA>
9695    chr1.84961266.84961645            <NA>       <NA>           <NA>
9696    chr1.84996706.84998590        (CGCCC)n      Other  Simple_repeat
9697    chr1.84996706.84998590            FRAM       SINE           SINE
9698    chr1.84996706.84998590             L2b       LINE           LINE
9699    chr1.85027412.85027968             MIR       SINE           SINE
9700    chr1.85027412.85027968           MER5A        DNA            DNA
9701    chr1.85027412.85027968             L2a       LINE           LINE
9702    chr1.85047474.85049017            <NA>       <NA>           <NA>
9703    chr1.85061917.85063180             L2a       LINE           LINE
9704    chr1.85061917.85063180             L2a       LINE           LINE
9705    chr1.85061917.85063180         (AATG)n      Other  Simple_repeat
9706    chr1.85061917.85063180             L2c       LINE           LINE
9707    chr1.85088197.85088648             MIR       SINE           SINE
9708    chr1.85109461.85109754      Charlie16a        DNA            DNA
9709    chr1.85118561.85119303             L2b       LINE           LINE
9710    chr1.85118561.85119303           L1MB3       LINE           LINE
9711    chr1.85118561.85119303           L1MB3       LINE           LINE
9712    chr1.85133685.85134089            L1M5       LINE           LINE
9713    chr1.85146666.85147345           L1PA7       LINE           LINE
9714    chr1.85146666.85147345            L1MD       LINE           LINE
9715    chr1.85149704.85150279           MSTB1        LTR            LTR
9716    chr1.85149704.85150279         MER113A        DNA            DNA
9717    chr1.85153099.85153725             L2a       LINE           LINE
9718    chr1.85153099.85153725             L2a       LINE           LINE
9719    chr1.85172620.85173026           L1MEc       LINE           LINE
9720    chr1.85195720.85195984             MIR       SINE           SINE
9721    chr1.85200242.85202118          (TCG)n      Other  Simple_repeat
9722    chr1.85200242.85202118          (GCG)n      Other  Simple_repeat
9723    chr1.85200242.85202118          G-rich      Other Low_complexity
9724    chr1.85212405.85212786           AluJr       SINE           SINE
9725    chr1.85224806.85225529            <NA>       <NA>           <NA>
9726    chr1.85225734.85226367            <NA>       <NA>           <NA>
9727    chr1.85239993.85240586            <NA>       <NA>           <NA>
9728    chr1.85244574.85245048             L3b       LINE           LINE
9729    chr1.85258583.85260012            <NA>       <NA>           <NA>
9730    chr1.85275906.85277173        (CGACG)n      Other  Simple_repeat
9731    chr1.85275906.85277173       (AGGCGC)n      Other  Simple_repeat
9732    chr1.85275906.85277173         (CACA)n      Other  Simple_repeat
9733    chr1.85275906.85277173          L1ME4c       LINE           LINE
9734    chr1.85278887.85279209             L2a       LINE           LINE
9735    chr1.85289464.85290462             MIR       SINE           SINE
9736    chr1.85295012.85295352            <NA>       <NA>           <NA>
9737    chr1.85297951.85298501            <NA>       <NA>           <NA>
9738    chr1.85308009.85308815            MIRc       SINE           SINE
9739    chr1.85313860.85314676              L3       LINE           LINE
9740    chr1.85313860.85314676           LTR33        LTR            LTR
9741    chr1.85313860.85314676           LTR33        LTR            LTR
9742    chr1.85315620.85316055            <NA>       <NA>           <NA>
9743    chr1.85320355.85320892            <NA>       <NA>           <NA>
9744    chr1.85328879.85329439            <NA>       <NA>           <NA>
9745    chr1.85330173.85330789            <NA>       <NA>           <NA>
9746    chr1.85330835.85331147            <NA>       <NA>           <NA>
9747    chr1.85338997.85339653           AluSz       SINE           SINE
9748    chr1.85343619.85344665          A-rich      Other Low_complexity
9749    chr1.85343619.85344665         (CCTC)n      Other  Simple_repeat
9750    chr1.85374159.85374452           LTR78        LTR            LTR
9751    chr1.85407037.85407572            <NA>       <NA>           <NA>
9752    chr1.85417208.85417505            <NA>       <NA>           <NA>
9753    chr1.85451282.85451861            MIRb       SINE           SINE
9754    chr1.85464096.85465539           (AC)n      Other  Simple_repeat
9755    chr1.85471229.85472052           LTR33        LTR            LTR
9756    chr1.85471229.85472052            MIRb       SINE           SINE
9757    chr1.85471229.85472052          MER39B        LTR            LTR
9758    chr1.85484355.85484969            <NA>       <NA>           <NA>
9759    chr1.85494413.85495067            <NA>       <NA>           <NA>
9760    chr1.85495333.85495878            <NA>       <NA>           <NA>
9761    chr1.85496967.85497188         MamRTE1       LINE           LINE
9762    chr1.85502511.85503026       (CACCAC)n      Other  Simple_repeat
9763    chr1.85502511.85503026       (CCACTG)n      Other  Simple_repeat
9764    chr1.85504435.85505038   MamGypsy2-LTR        LTR            LTR
9765    chr1.85504435.85505038            MIRb       SINE           SINE
9766    chr1.85504435.85505038           MER5A        DNA            DNA
9767    chr1.85504435.85505038          AluSq2       SINE           SINE
9768    chr1.85521379.85521775       Chap1_Mam        DNA            DNA
9769    chr1.85521379.85521775             L2c       LINE           LINE
9770    chr1.85525594.85526286            <NA>       <NA>           <NA>
9771    chr1.85527051.85527551            <NA>       <NA>           <NA>
9772    chr1.85544371.85545521            <NA>       <NA>           <NA>
9773    chr1.85547497.85547987             L3b       LINE           LINE
9774    chr1.85547497.85547987      Charlie23a        DNA            DNA
9775    chr1.85550833.85551338            <NA>       <NA>           <NA>
9776    chr1.85553599.85554041            <NA>       <NA>           <NA>
9777    chr1.85555980.85556695          (CCT)n      Other  Simple_repeat
9778    chr1.85555980.85556695        MamSINE1       SINE           SINE
9779    chr1.85555980.85556695           (GT)n      Other  Simple_repeat
9780    chr1.85568813.85570000             L2c       LINE           LINE
9781    chr1.85570300.85570995           (CA)n      Other  Simple_repeat
9782    chr1.85570300.85570995            MIRb       SINE           SINE
9783    chr1.85576357.85578247            MIRc       SINE           SINE
9784    chr1.85576357.85578247       (CCCACA)n      Other  Simple_repeat
9785    chr1.85576357.85578247           (CA)n      Other  Simple_repeat
9786    chr1.85576357.85578247       (ACCGCC)n      Other  Simple_repeat
9787    chr1.85576357.85578247          G-rich      Other Low_complexity
9788    chr1.85576357.85578247           MER5A        DNA            DNA
9789    chr1.85580138.85580361            <NA>       <NA>           <NA>
9790    chr1.85580518.85582685           (AC)n      Other  Simple_repeat
9791    chr1.85584132.85584793            <NA>       <NA>           <NA>
9792    chr1.85599093.85599415            <NA>       <NA>           <NA>
9793    chr1.85607050.85607759            <NA>       <NA>           <NA>
9794    chr1.85611860.85612239            <NA>       <NA>           <NA>
9795    chr1.85612658.85613392            MIR3       SINE           SINE
9796    chr1.85628771.85629676            <NA>       <NA>           <NA>
9797    chr1.85654200.85654983             L2c       LINE           LINE
9798    chr1.85654200.85654983            MIRc       SINE           SINE
9799    chr1.85654200.85654983            MIRb       SINE           SINE
9800    chr1.85691433.85691895          AluSz6       SINE           SINE
9801    chr1.85691433.85691895           AluSx       SINE           SINE
9802    chr1.85692240.85692761            <NA>       <NA>           <NA>
9803    chr1.85707880.85708854            MIRb       SINE           SINE
9804    chr1.85850202.85850647             L2a       LINE           LINE
9805    chr1.85850202.85850647             MIR       SINE           SINE
9806    chr1.86068429.86068694           L1MA2       LINE           LINE
9807    chr1.86069029.86069412           L1MA2       LINE           LINE
9808    chr1.86154712.86157474          G-rich      Other Low_complexity
9809    chr1.86207311.86207745             L3b       LINE           LINE
9810    chr1.86224470.86224895            MIRc       SINE           SINE
9811    chr1.86224470.86224895             L2c       LINE           LINE
9812    chr1.86226979.86227563           MLT1C        LTR            LTR
9813    chr1.86239244.86239884          MLT2B1        LTR            LTR
9814    chr1.86239244.86239884            MIRb       SINE           SINE
9815    chr1.86239244.86239884             MIR       SINE           SINE
9816    chr1.86280525.86280808     ERVL-B4-int        LTR            LTR
9817    chr1.86388045.86388511             L2c       LINE           LINE
9818    chr1.86395281.86396716            MIRb       SINE           SINE
9819    chr1.86395281.86396716            MIR3       SINE           SINE
9820    chr1.86409552.86409903          LTR18A        LTR            LTR
9821    chr1.86409552.86409903     HERVL18-int        LTR            LTR
9822    chr1.86419390.86419577            <NA>       <NA>           <NA>
9823    chr1.86446073.86446401           AluSc       SINE           SINE
9824    chr1.86461533.86461982          MER61E        LTR            LTR
9825    chr1.86461533.86461982           LTR49        LTR            LTR
9826    chr1.86472180.86472482              L2       LINE           LINE
9827    chr1.86487176.86488077          LTR81C        LTR            LTR
9828    chr1.86502617.86504479     HERVK11-int        LTR            LTR
9829    chr1.86502617.86504479          (CTG)n      Other  Simple_repeat
9830    chr1.86505242.86505669            <NA>       <NA>           <NA>
9831    chr1.86515734.86515887            <NA>       <NA>           <NA>
9832    chr1.86516366.86516721          MER115        DNA            DNA
9833    chr1.86517381.86518003          MER45B        DNA            DNA
9834    chr1.86517381.86518003            MIRb       SINE           SINE
9835    chr1.86538833.86539242         LTR16A2        LTR            LTR
9836    chr1.86562024.86562390           (AC)n      Other  Simple_repeat
9837    chr1.86562024.86562390          MER5A1        DNA            DNA
9838    chr1.86640235.86640604            <NA>       <NA>           <NA>
9839    chr1.86648309.86648567            <NA>       <NA>           <NA>
9840    chr1.86704001.86705656             L2b       LINE           LINE
9841    chr1.86712304.86712714            MIRb       SINE           SINE
9842    chr1.86714119.86714842       Tigger16a        DNA            DNA
9843    chr1.86718735.86719078            <NA>       <NA>           <NA>
9844    chr1.86748770.86749337            MIRb       SINE           SINE
9845    chr1.86764988.86765596          L1PA16       LINE           LINE
9846    chr1.86773696.86775806            MIRb       SINE           SINE
9847    chr1.86773696.86775806             L2c       LINE           LINE
9848    chr1.86779439.86779879             L2b       LINE           LINE
9849    chr1.86779439.86779879            MIRc       SINE           SINE
9850    chr1.86780850.86781317           L1MB2       LINE           LINE
9851    chr1.86780850.86781317           L1MB2       LINE           LINE
9852    chr1.86780850.86781317          AluSq2       SINE           SINE
9853    chr1.86788396.86789234           L1MB2       LINE           LINE
9854    chr1.86788396.86789234          L1MC5a       LINE           LINE
9855    chr1.86788396.86789234        L4_C_Mam       LINE           LINE
9856    chr1.86788396.86789234             L2c       LINE           LINE
9857    chr1.86792876.86793454            <NA>       <NA>           <NA>
9858    chr1.86821876.86822239             MIR       SINE           SINE
9859    chr1.86825142.86825906           LTR33        LTR            LTR
9860    chr1.86825142.86825906          G-rich      Other Low_complexity
9861    chr1.86827651.86827849         MER103C        DNA            DNA
9862    chr1.86827651.86827849           MER5C        DNA            DNA
9863    chr1.86829487.86829740          MLT1A0        LTR            LTR
9864    chr1.86833455.86833943           L1MC4       LINE           LINE
9865    chr1.86900520.86901200            AluY       SINE           SINE
9866    chr1.86900520.86901200           SVA_D Retroposon     Retroposon
9867    chr1.86900520.86901200       (GGAGAC)n      Other  Simple_repeat
9868    chr1.86900520.86901200           AluJb       SINE           SINE
9869    chr1.86906471.86906788          MLT1G3        LTR            LTR
9870    chr1.86913561.86915836      (CCCCGCT)n      Other  Simple_repeat
9871    chr1.86933759.86934256           L1MCb       LINE           LINE
9872    chr1.86946985.86947271          LTR40a        LTR            LTR
9873    chr1.86946985.86947271          LTR40a        LTR            LTR
9874    chr1.86948207.86948455            FRAM       SINE           SINE
9875    chr1.86953235.86953801         Tigger1        DNA            DNA
9876    chr1.86953235.86953801          AluSx1       SINE           SINE
9877    chr1.86953235.86953801         Tigger1        DNA            DNA
9878    chr1.87025045.87025483           LTR50        LTR            LTR
9879    chr1.87057789.87058327            AluY       SINE           SINE
9880    chr1.87057789.87058327              L3       LINE           LINE
9881    chr1.87089532.87090322        MamSINE1       SINE           SINE
9882    chr1.87089532.87090322             L2b       LINE           LINE
9883    chr1.87115468.87115776         MamTip2        DNA            DNA
9884    chr1.87117891.87118242            <NA>       <NA>           <NA>
9885    chr1.87130459.87130838            <NA>       <NA>           <NA>
9886    chr1.87131676.87132438            <NA>       <NA>           <NA>
9887    chr1.87140883.87141161            <NA>       <NA>           <NA>
9888    chr1.87151352.87152395           MER53        DNA            DNA
9889    chr1.87174718.87175213            MIRc       SINE           SINE
9890    chr1.87219460.87219608            <NA>       <NA>           <NA>
9891    chr1.87224272.87224530             MIR       SINE           SINE
9892    chr1.87224272.87224530             MIR       SINE           SINE
9893    chr1.87225995.87226821             L2a       LINE           LINE
9894    chr1.87284545.87285303      MamGypLTR3        LTR            LTR
9895    chr1.87284545.87285303            MIRc       SINE           SINE
9896    chr1.87291035.87291590            MIRb       SINE           SINE
9897    chr1.87292854.87293178            <NA>       <NA>           <NA>
9898    chr1.87328170.87329555         (GAGC)n      Other  Simple_repeat
9899    chr1.87328170.87329555          G-rich      Other Low_complexity
9900    chr1.87328170.87329555        (CGCCG)n      Other  Simple_repeat
9901    chr1.87331342.87332145      (CTCCCGT)n      Other  Simple_repeat
9902    chr1.87331342.87332145          G-rich      Other Low_complexity
9903    chr1.87331342.87332145         GA-rich      Other Low_complexity
9904    chr1.87335169.87335581          G-rich      Other Low_complexity
9905    chr1.87355760.87356508          MER131      Other           DNA?
9906    chr1.87369803.87370852             MIR       SINE           SINE
9907    chr1.87369803.87370852         (ATTC)n      Other  Simple_repeat
9908    chr1.87369803.87370852            MIRb       SINE           SINE
9909    chr1.87392091.87393304            <NA>       <NA>           <NA>
9910    chr1.87435526.87436887            <NA>       <NA>           <NA>
9911    chr1.87449362.87449756            <NA>       <NA>           <NA>
9912    chr1.87464021.87464267          L1MC4a       LINE           LINE
9913    chr1.87464021.87464267          L1MC4a       LINE           LINE
9914    chr1.87473160.87473747            MIRb       SINE           SINE
9915    chr1.87559021.87559200            <NA>       <NA>           <NA>
9916    chr1.87560759.87561552            <NA>       <NA>           <NA>
9917    chr1.87618219.87618603            <NA>       <NA>           <NA>
9918    chr1.87642534.87643233            <NA>       <NA>           <NA>
9919    chr1.87644575.87645309            <NA>       <NA>           <NA>
9920    chr1.87684142.87684545            <NA>       <NA>           <NA>
9921    chr1.87686028.87686565            <NA>       <NA>           <NA>
9922    chr1.87706064.87706585             L2a       LINE           LINE
9923    chr1.87706701.87707062         GA-rich      Other Low_complexity
9924    chr1.87712198.87712874             L2c       LINE           LINE
9925    chr1.87712198.87712874             L2c       LINE           LINE
9926    chr1.87718146.87718604             MIR       SINE           SINE
9927    chr1.87730396.87731271         MamRTE1       LINE           LINE
9928    chr1.87730396.87731271             L2c       LINE           LINE
9929    chr1.87730396.87731271             MIR       SINE           SINE
9930    chr1.87748064.87748442        (GAAAA)n      Other  Simple_repeat
9931    chr1.87766713.87767076             L2b       LINE           LINE
9932    chr1.87786860.87787186            <NA>       <NA>           <NA>
9933    chr1.87787551.87788011             L2c       LINE           LINE
9934    chr1.87794964.87795865             L2c       LINE           LINE
9935    chr1.87806004.87806654            <NA>       <NA>           <NA>
9936    chr1.87841857.87842727        (TTGTT)n      Other  Simple_repeat
9937    chr1.87841857.87842727       Tigger15a        DNA            DNA
9938    chr1.87841857.87842727            MIRb       SINE           SINE
9939    chr1.87883774.87884242            <NA>       <NA>           <NA>
9940    chr1.87902827.87903144            <NA>       <NA>           <NA>
9941    chr1.87905497.87906205            <NA>       <NA>           <NA>
9942    chr1.87916862.87917296            <NA>       <NA>           <NA>
9943    chr1.87937850.87938243            <NA>       <NA>           <NA>
9944    chr1.87951817.87952133            <NA>       <NA>           <NA>
9945    chr1.87953700.87954060            <NA>       <NA>           <NA>
9946    chr1.87954736.87955358          MER5A1        DNA            DNA
9947    chr1.87954736.87955358           (TC)n      Other  Simple_repeat
9948    chr1.87954736.87955358            (T)n      Other  Simple_repeat
9949    chr1.87955908.87956348          UCON51      Other           LTR?
9950    chr1.87968284.87968958            (T)n      Other  Simple_repeat
9951    chr1.87983749.87984256            MSTB        LTR            LTR
9952    chr1.88017025.88017274            <NA>       <NA>           <NA>
9953    chr1.88045292.88045653         LTR16E1        LTR            LTR
9954    chr1.88061045.88062115         (CCCT)n      Other  Simple_repeat
9955    chr1.88061045.88062115         (CTTC)n      Other  Simple_repeat
9956    chr1.88175622.88176154            <NA>       <NA>           <NA>
9957    chr1.88180569.88180966            <NA>       <NA>           <NA>
9958    chr1.88228249.88228434            <NA>       <NA>           <NA>
9959    chr1.88236866.88237224            <NA>       <NA>           <NA>
9960    chr1.88311240.88312245             L2a       LINE           LINE
9961    chr1.88311240.88312245             MIR       SINE           SINE
9962    chr1.88318807.88319048            <NA>       <NA>           <NA>
9963    chr1.88324839.88325178            <NA>       <NA>           <NA>
9964    chr1.88327627.88328269            <NA>       <NA>           <NA>
9965    chr1.88457307.88458017           (AC)n      Other  Simple_repeat
9966    chr1.88462573.88463219            <NA>       <NA>           <NA>
9967    chr1.88472273.88472828            <NA>       <NA>           <NA>
9968    chr1.88490609.88490912       Tigger17a        DNA            DNA
9969    chr1.88513296.88513742           MLT1B        LTR            LTR
9970    chr1.88515379.88515710           MER5B        DNA            DNA
9971    chr1.88609177.88609468            <NA>       <NA>           <NA>
9972    chr1.88683571.88685321          A-rich      Other Low_complexity
9973    chr1.88683571.88685321      (CTCTCCC)n      Other  Simple_repeat
9974    chr1.88683571.88685321            (T)n      Other  Simple_repeat
9975    chr1.88691573.88692036          L1ME3F       LINE           LINE
9976    chr1.88691573.88692036          MER44A        DNA            DNA
9977    chr1.88697494.88698545             L2c       LINE           LINE
9978    chr1.88697494.88698545          MER39B        LTR            LTR
9979    chr1.88697494.88698545        L4_B_Mam       LINE           LINE
9980    chr1.88731511.88731824            MIR3       SINE           SINE
9981    chr1.88736513.88737832           AluSx       SINE           SINE
9982    chr1.88736513.88737832            L1M1       LINE           LINE
9983    chr1.88736513.88737832            L1M1       LINE           LINE
9984    chr1.88763166.88763953           AluSp       SINE           SINE
9985    chr1.88773559.88774546          AluSz6       SINE           SINE
9986    chr1.88773559.88774546            FRAM       SINE           SINE
9987    chr1.88773559.88774546          MER21C        LTR            LTR
9988    chr1.88801734.88802314          LTR10E        LTR            LTR
9989    chr1.88880569.88881060          AluSz6       SINE           SINE
9990    chr1.88891206.88892163            <NA>       <NA>           <NA>
9991    chr1.88910360.88910772             L2a       LINE           LINE
9992    chr1.88936899.88937143            <NA>       <NA>           <NA>
9993    chr1.88955437.88955809           MER5A        DNA            DNA
9994    chr1.88984932.88985612          LTR37A        LTR            LTR
9995    chr1.88984932.88985612         (GAGT)n      Other  Simple_repeat
9996    chr1.88984932.88985612            MIRb       SINE           SINE
9997    chr1.88992113.88993342            AluY       SINE           SINE
9998    chr1.88992113.88993342        (GCGCC)n      Other  Simple_repeat
9999    chr1.88998622.88999274             L2a       LINE           LINE
10000   chr1.88998622.88999274           AluJo       SINE           SINE
10001   chr1.88998622.88999274          (TAT)n      Other  Simple_repeat
10002   chr1.88998622.88999274           AluJo       SINE           SINE
10003   chr1.89001609.89001906      MamRep1527        LTR            LTR
10004   chr1.89001609.89001906          HAL1M8       LINE           LINE
10005   chr1.89001609.89001906           MER5A        DNA            DNA
10006   chr1.89021473.89022894           (CA)n      Other  Simple_repeat
10007   chr1.89021473.89022894          (CAA)n      Other  Simple_repeat
10008   chr1.89021473.89022894         GA-rich      Other Low_complexity
10009   chr1.89021473.89022894           (GA)n      Other  Simple_repeat
10010   chr1.89021473.89022894            (A)n      Other  Simple_repeat
10011   chr1.89064051.89064450         GA-rich      Other Low_complexity
10012   chr1.89064051.89064450           (TG)n      Other  Simple_repeat
10013   chr1.89064051.89064450         GA-rich      Other Low_complexity
10014   chr1.89088605.89088867     HERVKC4-int        LTR            LTR
10015   chr1.89088605.89088867     HERVKC4-int        LTR            LTR
10016   chr1.89088605.89088867            L1P3       LINE           LINE
10017   chr1.89125744.89126397            <NA>       <NA>           <NA>
10018   chr1.89149330.89149634            <NA>       <NA>           <NA>
10019   chr1.89200777.89201067            <NA>       <NA>           <NA>
10020   chr1.89203097.89203624            <NA>       <NA>           <NA>
10021   chr1.89260317.89261200           MER1B        DNA            DNA
10022   chr1.89262025.89262292             MIR       SINE           SINE
10023   chr1.89262710.89262970            <NA>       <NA>           <NA>
10024   chr1.89295173.89295551            <NA>       <NA>           <NA>
10025   chr1.89358221.89358860       (TCTCTC)n      Other  Simple_repeat
10026   chr1.89363021.89363694         LTR16E1        LTR            LTR
10027   chr1.89363021.89363694           MER1B        DNA            DNA
10028   chr1.89363021.89363694           L1PB4       LINE           LINE
10029   chr1.89363021.89363694           (CT)n      Other  Simple_repeat
10030   chr1.89363021.89363694           (TG)n      Other  Simple_repeat
10031   chr1.89363985.89364544          A-rich      Other Low_complexity
10032   chr1.89366301.89366533            <NA>       <NA>           <NA>
10033   chr1.89451057.89451440         Tigger1        DNA            DNA
10034   chr1.89453600.89454002            <NA>       <NA>           <NA>
10035   chr1.89454839.89455368            <NA>       <NA>           <NA>
10036   chr1.89465214.89465815            MIRc       SINE           SINE
10037   chr1.89465214.89465815            MIRb       SINE           SINE
10038   chr1.89465214.89465815            MIRc       SINE           SINE
10039   chr1.89472889.89473259          L1PA11       LINE           LINE
10040   chr1.89483177.89483675            <NA>       <NA>           <NA>
10041   chr1.89503776.89504322        (TTTTC)n      Other  Simple_repeat
10042   chr1.89503776.89504322            MIRb       SINE           SINE
10043   chr1.89516089.89516332             L2b       LINE           LINE
10044   chr1.89518236.89518817            <NA>       <NA>           <NA>
10045   chr1.89524039.89525676          (CCT)n      Other  Simple_repeat
10046   chr1.89524039.89525676       (CCGCCT)n      Other  Simple_repeat
10047   chr1.89538370.89538662            <NA>       <NA>           <NA>
10048   chr1.89545386.89546357            MIRc       SINE           SINE
10049   chr1.89545386.89546357           L1MC5       LINE           LINE
10050   chr1.89545386.89546357              L3       LINE           LINE
10051   chr1.89547752.89548032            <NA>       <NA>           <NA>
10052   chr1.89548715.89549522             L2a       LINE           LINE
10053   chr1.89555618.89556040          MER21C        LTR            LTR
10054   chr1.89590630.89591240           MER20        DNA            DNA
10055   chr1.89590630.89591240             L2b       LINE           LINE
10056   chr1.89598917.89599543            <NA>       <NA>           <NA>
10057   chr1.89603843.89604547            <NA>       <NA>           <NA>
10058   chr1.89605893.89606055             L2c       LINE           LINE
10059   chr1.89608023.89608776            MIRc       SINE           SINE
10060   chr1.89608023.89608776           MLT1A        LTR            LTR
10061   chr1.89610185.89610668          MER52D        LTR            LTR
10062   chr1.89616850.89617747            MIRb       SINE           SINE
10063   chr1.89616850.89617747          MER21C        LTR            LTR
10064   chr1.89632027.89634152       (CGCGGC)n      Other  Simple_repeat
10065   chr1.89640601.89640786            <NA>       <NA>           <NA>
10066   chr1.89659402.89660104            MIRb       SINE           SINE
10067   chr1.89659402.89660104             L2b       LINE           LINE
10068   chr1.89692543.89693159            <NA>       <NA>           <NA>
10069   chr1.89701852.89702151           L1MEi       LINE           LINE
10070   chr1.89708916.89709508            MIRc       SINE           SINE
10071   chr1.89708916.89709508          MER91A        DNA            DNA
10072   chr1.89710007.89710273            AluY       SINE           SINE
10073   chr1.89710007.89710273            MIRc       SINE           SINE
10074   chr1.89719648.89720275        AmnSINE1       SINE           SINE
10075   chr1.89719648.89720275       (GTGAGT)n      Other  Simple_repeat
10076   chr1.89724771.89725228            <NA>       <NA>           <NA>
10077   chr1.89736779.89737575            MIRb       SINE           SINE
10078   chr1.89736779.89737575             L2a       LINE           LINE
10079   chr1.89736779.89737575        Tigger3b        DNA            DNA
10080   chr1.89739163.89739542            <NA>       <NA>           <NA>
10081   chr1.89762593.89763649           (AC)n      Other  Simple_repeat
10082   chr1.89794426.89794828           AluSc       SINE           SINE
10083   chr1.89802197.89802687            <NA>       <NA>           <NA>
10084   chr1.89802943.89803134          AluJr4       SINE           SINE
10085   chr1.89804621.89805089            MIRb       SINE           SINE
10086   chr1.89808387.89808955            <NA>       <NA>           <NA>
10087   chr1.89820506.89822216            <NA>       <NA>           <NA>
10088   chr1.89823650.89824149           MER20        DNA            DNA
10089   chr1.89842828.89844198            <NA>       <NA>           <NA>
10090   chr1.89865913.89866601      Charlie29a        DNA            DNA
10091   chr1.89865913.89866601      Charlie29a        DNA            DNA
10092   chr1.89877725.89878079            <NA>       <NA>           <NA>
10093   chr1.89878387.89878727           AluSq       SINE           SINE
10094   chr1.89885227.89885548             L2c       LINE           LINE
10095   chr1.89890216.89890433            AluY       SINE           SINE
10096   chr1.89890216.89890433       Tigger15a        DNA            DNA
10097   chr1.89894030.89895084          MLT1A0        LTR            LTR
10098   chr1.89900852.89901334            MIR3       SINE           SINE
10099   chr1.89906378.89907239           MER5A        DNA            DNA
10100   chr1.89906378.89907239           AluSx       SINE           SINE
10101   chr1.89910827.89911141            <NA>       <NA>           <NA>
10102   chr1.89911617.89912027              L2       LINE           LINE
10103   chr1.89918785.89919102        L4_C_Mam       LINE           LINE
10104   chr1.89918785.89919102             L2c       LINE           LINE
10105   chr1.89928540.89928916            <NA>       <NA>           <NA>
10106   chr1.89938068.89938751            <NA>       <NA>           <NA>
10107   chr1.89945964.89946433           AluJb       SINE           SINE
10108   chr1.89952970.89953567           LTR8B        LTR            LTR
10109   chr1.89962055.89962583           LTR33        LTR            LTR
10110   chr1.89962055.89962583             L3b       LINE           LINE
10111   chr1.89971595.89971915             L2a       LINE           LINE
10112   chr1.89975152.89975851            <NA>       <NA>           <NA>
10113   chr1.89978661.89979106           L1ME1       LINE           LINE
10114   chr1.89987014.89987775           AluJr       SINE           SINE
10115   chr1.89987014.89987775             L2b       LINE           LINE
10116   chr1.89994715.89995768            <NA>       <NA>           <NA>
10117   chr1.90032551.90032923            <NA>       <NA>           <NA>
10118   chr1.90107119.90107447     (AAGATATT)n      Other  Simple_repeat
10119   chr1.90133138.90133584          MER91C        DNA            DNA
10120   chr1.90133138.90133584           MLT1I        LTR            LTR
10121   chr1.90190345.90191031            <NA>       <NA>           <NA>
10122   chr1.90192493.90192970            <NA>       <NA>           <NA>
10123   chr1.90203892.90204269            <NA>       <NA>           <NA>
10124   chr1.90219323.90219824           L1PA3       LINE           LINE
10125   chr1.90274354.90274772             MIR       SINE           SINE
10126   chr1.90386853.90387441            <NA>       <NA>           <NA>
10127   chr1.90403090.90403734             L2a       LINE           LINE
10128   chr1.90403090.90403734          Zaphod        DNA            DNA
10129   chr1.90409019.90409224            <NA>       <NA>           <NA>
10130   chr1.90508464.90508959            <NA>       <NA>           <NA>
10131   chr1.90578998.90579474             L2b       LINE           LINE
10132   chr1.90605194.90605606        AmnSINE1       SINE           SINE
10133   chr1.90605194.90605606            MIRc       SINE           SINE
10134   chr1.90616491.90616786            <NA>       <NA>           <NA>
10135   chr1.90706501.90707736            <NA>       <NA>           <NA>
10136   chr1.90712227.90712764            <NA>       <NA>           <NA>
10137   chr1.90718017.90719313       (CCAGCG)n      Other  Simple_repeat
10138   chr1.90718017.90719313       (CCGCGC)n      Other  Simple_repeat
10139   chr1.90718017.90719313          G-rich      Other Low_complexity
10140   chr1.90725229.90726165            <NA>       <NA>           <NA>
10141   chr1.90768204.90768408          L1PA10       LINE           LINE
10142   chr1.90784434.90784901            MIRb       SINE           SINE
10143   chr1.90835476.90836464            <NA>       <NA>           <NA>
10144   chr1.90850640.90852071        (GCCCC)n      Other  Simple_repeat
10145   chr1.90893030.90894069           AluJr       SINE           SINE
10146   chr1.90919568.90920216             L2a       LINE           LINE
10147   chr1.90925041.90925256           LTR23        LTR            LTR
10148   chr1.90925898.90926666           MER72        LTR            LTR
10149   chr1.90970657.90971179           AluSc       SINE           SINE
10150   chr1.90970657.90971179           L1MB3       LINE           LINE
10151   chr1.90974083.90974702           MER39        LTR            LTR
10152   chr1.90974083.90974702          AluSg4       SINE           SINE
10153   chr1.90974083.90974702             L2a       LINE           LINE
10154   chr1.90994401.90994885           L1MEc       LINE           LINE
10155   chr1.90994401.90994885          L1M4a1       LINE           LINE
10156   chr1.91015403.91015898            MIRb       SINE           SINE
10157   chr1.91021053.91022605            <NA>       <NA>           <NA>
10158   chr1.91070397.91070758          MER63B        DNA            DNA
10159   chr1.91098242.91099020         GA-rich      Other Low_complexity
10160   chr1.91098242.91099020           MER5A        DNA            DNA
10161   chr1.91099788.91100446          MER41A        LTR            LTR
10162   chr1.91099788.91100446            MIRb       SINE           SINE
10163   chr1.91121012.91121307             L2b       LINE           LINE
10164   chr1.91165032.91165693           LTR78        LTR            LTR
10165   chr1.91165032.91165693           LTR78        LTR            LTR
10166   chr1.91166222.91166510            <NA>       <NA>           <NA>
10167   chr1.91273927.91274203      MamRep1894        DNA            DNA
10168   chr1.91381905.91382222             L2a       LINE           LINE
10169   chr1.91404141.91405135            <NA>       <NA>           <NA>
10170   chr1.91500353.91501965             L2a       LINE           LINE
10171   chr1.91523410.91524148             L2b       LINE           LINE
10172   chr1.91523410.91524148           (TG)n      Other  Simple_repeat
10173   chr1.91523410.91524148            (T)n      Other  Simple_repeat
10174   chr1.91529655.91530591            MIRb       SINE           SINE
10175   chr1.91529655.91530591             L2c       LINE           LINE
10176   chr1.91556193.91556600          A-rich      Other Low_complexity
10177   chr1.91556851.91557533             L2b       LINE           LINE
10178   chr1.91556851.91557533             MIR       SINE           SINE
10179   chr1.91569559.91570255           (GA)n      Other  Simple_repeat
10180   chr1.91569559.91570255           (GT)n      Other  Simple_repeat
10181   chr1.91569559.91570255           (GA)n      Other  Simple_repeat
10182   chr1.91569559.91570255         GA-rich      Other Low_complexity
10183   chr1.91574870.91575414           (GT)n      Other  Simple_repeat
10184   chr1.91582590.91582820           MLT1L        LTR            LTR
10185   chr1.91584633.91585450            <NA>       <NA>           <NA>
10186   chr1.91594418.91595240             MIR       SINE           SINE
10187   chr1.91594418.91595240             MIR       SINE           SINE
10188   chr1.91596412.91596745         Tigger1        DNA            DNA
10189   chr1.91600704.91601259             L2c       LINE           LINE
10190   chr1.91601581.91602437           (AC)n      Other  Simple_repeat
10191   chr1.91608919.91609367            <NA>       <NA>           <NA>
10192   chr1.91609551.91609908            <NA>       <NA>           <NA>
10193   chr1.91611430.91611914            <NA>       <NA>           <NA>
10194   chr1.91613675.91613866            <NA>       <NA>           <NA>
10195   chr1.91615275.91615918          AluSc5       SINE           SINE
10196   chr1.91615275.91615918           AluJr       SINE           SINE
10197   chr1.91650676.91651270            <NA>       <NA>           <NA>
10198   chr1.91683610.91683800   (GCTGGGTTGG)n      Other  Simple_repeat
10199   chr1.91684686.91685200            <NA>       <NA>           <NA>
10200   chr1.91699487.91699898             L2c       LINE           LINE
10201   chr1.91699487.91699898            MIRc       SINE           SINE
10202   chr1.91706428.91706659          MER41B        LTR            LTR
10203   chr1.91707377.91708047         MamRTE1       LINE           LINE
10204   chr1.91732584.91732851            <NA>       <NA>           <NA>
10205   chr1.91736804.91737497            MIRc       SINE           SINE
10206   chr1.91754366.91755072            <NA>       <NA>           <NA>
10207   chr1.91765276.91765612             L2b       LINE           LINE
10208   chr1.91778947.91779411             L2a       LINE           LINE
10209   chr1.91778947.91779411             MIR       SINE           SINE
10210   chr1.91781054.91781672           LTR87        LTR            LTR
10211   chr1.91798677.91799678             L2b       LINE           LINE
10212   chr1.91798677.91799678            MIRb       SINE           SINE
10213   chr1.91799688.91800108            <NA>       <NA>           <NA>
10214   chr1.91818327.91818692            <NA>       <NA>           <NA>
10215   chr1.91819162.91819761           AluSg       SINE           SINE
10216   chr1.91826135.91826587             L2c       LINE           LINE
10217   chr1.91826135.91826587           MLT1L        LTR            LTR
10218   chr1.91827152.91827670             L2b       LINE           LINE
10219   chr1.91844948.91845483            <NA>       <NA>           <NA>
10220   chr1.91846036.91846467            <NA>       <NA>           <NA>
10221   chr1.91851277.91851685            <NA>       <NA>           <NA>
10222   chr1.91884863.91885226             MIR       SINE           SINE
10223   chr1.91885393.91886990     (CTGCCCCG)n      Other  Simple_repeat
10224   chr1.91885393.91886990      (CCCCCTC)n      Other  Simple_repeat
10225   chr1.91885393.91886990          (CTC)n      Other  Simple_repeat
10226   chr1.91900622.91901021          FLAM_A       SINE           SINE
10227   chr1.91927203.91927593            AluY       SINE           SINE
10228   chr1.91927203.91927593           (CA)n      Other  Simple_repeat
10229   chr1.91927203.91927593           AluJr       SINE           SINE
10230   chr1.91929350.91929717             L2c       LINE           LINE
10231   chr1.91929350.91929717            MIR3       SINE           SINE
10232   chr1.91929350.91929717          AluSq2       SINE           SINE
10233   chr1.91977602.91977853          AluSz6       SINE           SINE
10234   chr1.92029425.92031079           (TG)n      Other  Simple_repeat
10235   chr1.92029425.92031079           (AG)n      Other  Simple_repeat
10236   chr1.92037448.92037744            <NA>       <NA>           <NA>
10237   chr1.92060148.92060408           AluJr       SINE           SINE
10238   chr1.92069245.92069571        Arthur1B        DNA            DNA
10239   chr1.92079936.92081035            <NA>       <NA>           <NA>
10240   chr1.92118640.92119432           L1MC3       LINE           LINE
10241   chr1.92118640.92119432           (GT)n      Other  Simple_repeat
10242   chr1.92118640.92119432           L1MC3       LINE           LINE
10243   chr1.92118640.92119432        Tigger3b        DNA            DNA
10244   chr1.92118640.92119432           AluJo       SINE           SINE
10245   chr1.92125202.92125618            <NA>       <NA>           <NA>
10246   chr1.92209412.92209659            <NA>       <NA>           <NA>
10247   chr1.92291491.92291686            <NA>       <NA>           <NA>
10248   chr1.92298542.92299533            <NA>       <NA>           <NA>
10249   chr1.92372239.92372646           AluJr       SINE           SINE
10250   chr1.92398628.92398822            <NA>       <NA>           <NA>
10251   chr1.92408796.92409227             L2b       LINE           LINE
10252   chr1.92411639.92411823            <NA>       <NA>           <NA>
10253   chr1.92417507.92417983             L2c       LINE           LINE
10254   chr1.92417507.92417983            MIRb       SINE           SINE
10255   chr1.92444144.92444698            MIR3       SINE           SINE
10256   chr1.92444144.92444698             L2c       LINE           LINE
10257   chr1.92446467.92447587            (T)n      Other  Simple_repeat
10258   chr1.92446467.92447587            MIR3       SINE           SINE
10259   chr1.92480457.92481330      (CCGGCCG)n      Other  Simple_repeat
10260   chr1.92484662.92486298            <NA>       <NA>           <NA>
10261   chr1.92486571.92487380         (TTAA)n      Other  Simple_repeat
10262   chr1.92530212.92530683           L1PA7       LINE           LINE
10263   chr1.92544797.92545017            <NA>       <NA>           <NA>
10264   chr1.92558175.92558542              L2       LINE           LINE
10265   chr1.92653746.92654467           L1PB4       LINE           LINE
10266   chr1.92701057.92701595            MIR3       SINE           SINE
10267   chr1.92701057.92701595            MIRb       SINE           SINE
10268   chr1.92723755.92724062          MER11A        LTR            LTR
10269   chr1.92736452.92736667            <NA>       <NA>           <NA>
10270   chr1.92747705.92748459          AluSx1       SINE           SINE
10271   chr1.92747705.92748459           MLT1C        LTR            LTR
10272   chr1.92747705.92748459          MLT1G3        LTR            LTR
10273   chr1.92747705.92748459          MLT1G3        LTR            LTR
10274   chr1.92749004.92749389           AluSp       SINE           SINE
10275   chr1.92753994.92754331             L2c       LINE           LINE
10276   chr1.92755612.92756391            <NA>       <NA>           <NA>
10277   chr1.92756559.92756971            <NA>       <NA>           <NA>
10278   chr1.92784240.92785609          (GGC)n      Other  Simple_repeat
10279   chr1.92784240.92785609         (CCGC)n      Other  Simple_repeat
10280   chr1.92792341.92792749         (TTCC)n      Other  Simple_repeat
10281   chr1.92795245.92795605           L1MB4       LINE           LINE
10282   chr1.92795245.92795605          AluSx1       SINE           SINE
10283   chr1.92797998.92798327           AluJo       SINE           SINE
10284   chr1.92804543.92805363           AluJr       SINE           SINE
10285   chr1.92804543.92805363        (AAATA)n      Other  Simple_repeat
10286   chr1.92804543.92805363              L2       LINE           LINE
10287   chr1.92804543.92805363          MER65D        LTR            LTR
10288   chr1.92804543.92805363           AluJb       SINE           SINE
10289   chr1.92804543.92805363           AluJb       SINE           SINE
10290   chr1.92804543.92805363          MER65D        LTR            LTR
10291   chr1.92810460.92810709            <NA>       <NA>           <NA>
10292   chr1.92811209.92811605         MamTip2        DNA            DNA
10293   chr1.92811209.92811605           AluJb       SINE           SINE
10294   chr1.92820344.92820820             L2a       LINE           LINE
10295   chr1.92822854.92823316          FLAM_C       SINE           SINE
10296   chr1.92822854.92823316           AluJr       SINE           SINE
10297   chr1.92822854.92823316          Zaphod        DNA            DNA
10298   chr1.92831530.92832994             L2c       LINE           LINE
10299   chr1.92831530.92832994        (AACAA)n      Other  Simple_repeat
10300   chr1.92831530.92832994           MER5C        DNA            DNA
10301   chr1.92848258.92848643             L2a       LINE           LINE
10302   chr1.92858964.92859563          LTR82A        LTR            LTR
10303   chr1.92862600.92862918             L2c       LINE           LINE
10304   chr1.92907931.92908387          AluSx3       SINE           SINE
10305   chr1.92907931.92908387              L2       LINE           LINE
10306   chr1.92909395.92909688           LTR78        LTR            LTR
10307   chr1.92924528.92924919           LTR3A        LTR            LTR
10308   chr1.92924528.92924919           L1MEf       LINE           LINE
10309   chr1.92934548.92935070            MIR3       SINE           SINE
10310   chr1.92950255.92950714             L2c       LINE           LINE
10311   chr1.92950255.92950714           AluJr       SINE           SINE
10312   chr1.92960419.92962623        MamSINE1       SINE           SINE
10313   chr1.92960419.92962623        (CCCGG)n      Other  Simple_repeat
10314   chr1.92960419.92962623            (T)n      Other  Simple_repeat
10315   chr1.92970938.92971509       Tigger15a        DNA            DNA
10316   chr1.92970938.92971509             MIR       SINE           SINE
10317   chr1.92994027.92994572      ERVL-E-int        LTR            LTR
10318   chr1.92994027.92994572      ERVL-E-int        LTR            LTR
10319   chr1.92994027.92994572           AluSp       SINE           SINE
10320   chr1.93004610.93005014           L1MA9       LINE           LINE
10321   chr1.93004610.93005014           L1MA9       LINE           LINE
10322   chr1.93004610.93005014             L2a       LINE           LINE
10323   chr1.93008109.93008643           MLT1K        LTR            LTR
10324   chr1.93013343.93013995           MER20        DNA            DNA
10325   chr1.93015353.93016763            MIRb       SINE           SINE
10326   chr1.93025471.93026057            MIRb       SINE           SINE
10327   chr1.93025471.93026057             L2c       LINE           LINE
10328   chr1.93025471.93026057            MIRc       SINE           SINE
10329   chr1.93033560.93034013          MER45B        DNA            DNA
10330   chr1.93062074.93062635            MIR3       SINE           SINE
10331   chr1.93062074.93062635          MLT1H1        LTR            LTR
10332   chr1.93078653.93080145            <NA>       <NA>           <NA>
10333   chr1.93080555.93080710            <NA>       <NA>           <NA>
10334   chr1.93093418.93093868            HAL1       LINE           LINE
10335   chr1.93093418.93093868             FAM       SINE           SINE
10336   chr1.93129619.93130009         (TTGA)n      Other  Simple_repeat
10337   chr1.93129619.93130009             L2a       LINE           LINE
10338   chr1.93147539.93147862         Tigger7        DNA            DNA
10339   chr1.93172688.93173277           L1MA7       LINE           LINE
10340   chr1.93179333.93181048           AluSx       SINE           SINE
10341   chr1.93179333.93181048        (GCCTC)n      Other  Simple_repeat
10342   chr1.93179333.93181048          (GGC)n      Other  Simple_repeat
10343   chr1.93179333.93181048          FLAM_C       SINE           SINE
10344   chr1.93199220.93199680          MER52A        LTR            LTR
10345   chr1.93255247.93255618          AluSg4       SINE           SINE
10346   chr1.93255247.93255618           AluJb       SINE           SINE
10347   chr1.93324895.93325253          MER112        DNA            DNA
10348   chr1.93331493.93331868            <NA>       <NA>           <NA>
10349   chr1.93338126.93338875           MLT1O        LTR            LTR
10350   chr1.93345180.93346954       (GCAGCG)n      Other  Simple_repeat
10351   chr1.93345180.93346954          (GGC)n      Other  Simple_repeat
10352   chr1.93374479.93374867           L1MA3       LINE           LINE
10353   chr1.93430541.93430904           L1ME1       LINE           LINE
10354   chr1.93430541.93430904           AluJb       SINE           SINE
10355   chr1.93435155.93435489          MER52A        LTR            LTR
10356   chr1.93442262.93442700           LTR3B        LTR            LTR
10357   chr1.93447735.93449648      (CCCCCTC)n      Other  Simple_repeat
10358   chr1.93447735.93449648        (CCTTT)n      Other  Simple_repeat
10359   chr1.93447735.93449648              L3       LINE           LINE
10360   chr1.93552695.93553452            <NA>       <NA>           <NA>
10361   chr1.93566074.93566773              L2       LINE           LINE
10362   chr1.93566074.93566773           AluSz       SINE           SINE
10363   chr1.93567243.93567871            <NA>       <NA>           <NA>
10364   chr1.93575612.93576011            <NA>       <NA>           <NA>
10365   chr1.93579861.93580186            <NA>       <NA>           <NA>
10366   chr1.93584872.93585811          MER129      Other           LTR?
10367   chr1.93584872.93585811           AluJb       SINE           SINE
10368   chr1.93588257.93588506            <NA>       <NA>           <NA>
10369   chr1.93592642.93593418           MER5C        DNA            DNA
10370   chr1.93592642.93593418           AluJb       SINE           SINE
10371   chr1.93605918.93606302            <NA>       <NA>           <NA>
10372   chr1.93620778.93621075            <NA>       <NA>           <NA>
10373   chr1.93623835.93624198            <NA>       <NA>           <NA>
10374   chr1.93625591.93625904            <NA>       <NA>           <NA>
10375   chr1.93629397.93629892            <NA>       <NA>           <NA>
10376   chr1.93631684.93632161            <NA>       <NA>           <NA>
10377   chr1.93638469.93638739            <NA>       <NA>           <NA>
10378   chr1.93641616.93641985          MER46C        DNA            DNA
10379   chr1.93661967.93663084              L3       LINE           LINE
10380   chr1.93664231.93665266           AluSp       SINE           SINE
10381   chr1.93664231.93665266         MamRTE1       LINE           LINE
10382   chr1.93672155.93673009             L2a       LINE           LINE
10383   chr1.93675249.93676073         GA-rich      Other Low_complexity
10384   chr1.93675249.93676073          A-rich      Other Low_complexity
10385   chr1.93680491.93682099        (CCTTC)n      Other  Simple_repeat
10386   chr1.93680491.93682099       (GCTCCG)n      Other  Simple_repeat
10387   chr1.93693014.93693735          MER5A1        DNA            DNA
10388   chr1.93701634.93702021            <NA>       <NA>           <NA>
10389   chr1.93702467.93703030            <NA>       <NA>           <NA>
10390   chr1.93703750.93704105             L2a       LINE           LINE
10391   chr1.93703750.93704105            MER3        DNA            DNA
10392   chr1.93708840.93709591            <NA>       <NA>           <NA>
10393   chr1.93715443.93716319            MIRc       SINE           SINE
10394   chr1.93715443.93716319          L1ME4b       LINE           LINE
10395   chr1.93717084.93717276           MLT1H        LTR            LTR
10396   chr1.93722979.93723555            <NA>       <NA>           <NA>
10397   chr1.93735801.93736068            <NA>       <NA>           <NA>
10398   chr1.93751784.93752361            <NA>       <NA>           <NA>
10399   chr1.93754450.93754751            MIRc       SINE           SINE
10400   chr1.93754450.93754751        Tigger3b        DNA            DNA
10401   chr1.93755294.93755585        Tigger3b        DNA            DNA
10402   chr1.93779588.93780087             L2a       LINE           LINE
10403   chr1.93804426.93804647          MER44B        DNA            DNA
10404   chr1.93814081.93814457           L1MC4       LINE           LINE
10405   chr1.93814081.93814457              U2      Other          snRNA
10406   chr1.93814081.93814457             MIR       SINE           SINE
10407   chr1.93816846.93817269            <NA>       <NA>           <NA>
10408   chr1.93827925.93828183           MER39        LTR            LTR
10409   chr1.93827925.93828183           AluJo       SINE           SINE
10410   chr1.93845627.93848198          LTR40c        LTR            LTR
10411   chr1.93845627.93848198             MIR       SINE           SINE
10412   chr1.93845627.93848198    tRNA-Arg-AGA      Other           tRNA
10413   chr1.93845627.93848198          (GCG)n      Other  Simple_repeat
10414   chr1.93845627.93848198           MER5A        DNA            DNA
10415   chr1.93850811.93850987           LTR13        LTR            LTR
10416   chr1.93878430.93879551            <NA>       <NA>           <NA>
10417   chr1.93893980.93894242           AluJb       SINE           SINE
10418   chr1.93908671.93910055         (GCGG)n      Other  Simple_repeat
10419   chr1.93908671.93910055          (CGG)n      Other  Simple_repeat
10420   chr1.93969159.93969781        Tigger3b        DNA            DNA
10421   chr1.93980458.93980944           MLT1J        LTR            LTR
10422   chr1.93995916.93996306            <NA>       <NA>           <NA>
10423   chr1.94012180.94013033             L2c       LINE           LINE
10424   chr1.94020551.94021500            <NA>       <NA>           <NA>
10425   chr1.94025984.94026316            MIRb       SINE           SINE
10426   chr1.94033820.94034470          LTR3B_        LTR            LTR
10427   chr1.94039524.94040532            <NA>       <NA>           <NA>
10428   chr1.94045404.94046097             MIR       SINE           SINE
10429   chr1.94061344.94062467            <NA>       <NA>           <NA>
10430   chr1.94068127.94068762         MamRTE1       LINE           LINE
10431   chr1.94078879.94079292           (CA)n      Other  Simple_repeat
10432   chr1.94090682.94091083             L2c       LINE           LINE
10433   chr1.94092226.94092642            <NA>       <NA>           <NA>
10434   chr1.94119932.94120318            <NA>       <NA>           <NA>
10435   chr1.94122285.94122635            MIRc       SINE           SINE
10436   chr1.94122285.94122635          (TGA)n      Other  Simple_repeat
10437   chr1.94126187.94126489          MER91A        DNA            DNA
10438   chr1.94126187.94126489          MER91A        DNA            DNA
10439   chr1.94126187.94126489           MLT1O        LTR            LTR
10440   chr1.94130817.94131628            AluY       SINE           SINE
10441   chr1.94130817.94131628          (AAC)n      Other  Simple_repeat
10442   chr1.94160830.94161211            <NA>       <NA>           <NA>
10443   chr1.94183164.94183715          L1MA5A       LINE           LINE
10444   chr1.94235920.94236578            <NA>       <NA>           <NA>
10445   chr1.94236673.94238021             MIR       SINE           SINE
10446   chr1.94246729.94248047            <NA>       <NA>           <NA>
10447   chr1.94258855.94259388            MIRb       SINE           SINE
10448   chr1.94258855.94259388           MLT1C        LTR            LTR
10449   chr1.94265930.94266460            <NA>       <NA>           <NA>
10450   chr1.94281184.94282019            <NA>       <NA>           <NA>
10451   chr1.94286841.94287412          MER21B        LTR            LTR
10452   chr1.94286841.94287412           THE1D        LTR            LTR
10453   chr1.94299865.94300547             L2b       LINE           LINE
10454   chr1.94299865.94300547             L2b       LINE           LINE
10455   chr1.94309303.94309637            MIRc       SINE           SINE
10456   chr1.94309303.94309637              L2       LINE           LINE
10457   chr1.94317202.94317485           L1MB3       LINE           LINE
10458   chr1.94317202.94317485           AluJo       SINE           SINE
10459   chr1.94322808.94323044             L2a       LINE           LINE
10460   chr1.94322808.94323044             L2c       LINE           LINE
10461   chr1.94325380.94326202        L4_A_Mam       LINE           LINE
10462   chr1.94325380.94326202       Tigger19b        DNA            DNA
10463   chr1.94327086.94327637            <NA>       <NA>           <NA>
10464   chr1.94329305.94329571            <NA>       <NA>           <NA>
10465   chr1.94333075.94333349            <NA>       <NA>           <NA>
10466   chr1.94334269.94335040            MIRb       SINE           SINE
10467   chr1.94335637.94336133            <NA>       <NA>           <NA>
10468   chr1.94358888.94359932          L1ME3A       LINE           LINE
10469   chr1.94358888.94359932             MIR       SINE           SINE
10470   chr1.94358888.94359932           L1MC2       LINE           LINE
10471   chr1.94383992.94384432             MIR       SINE           SINE
10472   chr1.94383992.94384432            MIRb       SINE           SINE
10473   chr1.94384714.94385341            <NA>       <NA>           <NA>
10474   chr1.94417251.94419251          MER112        DNA            DNA
10475   chr1.94417251.94419251          (GCC)n      Other  Simple_repeat
10476   chr1.94417251.94419251          G-rich      Other Low_complexity
10477   chr1.94481404.94481860           MLT1L        LTR            LTR
10478   chr1.94503164.94503590           MER30        DNA            DNA
10479   chr1.94503164.94503590             L2c       LINE           LINE
10480   chr1.94527316.94528078          AluSz6       SINE           SINE
10481   chr1.94540930.94542582            MIRc       SINE           SINE
10482   chr1.94552030.94552590             MIR       SINE           SINE
10483   chr1.94562736.94563508           MER1A        DNA            DNA
10484   chr1.94579746.94580555          L1PA11       LINE           LINE
10485   chr1.94590075.94591077           MLT1M        LTR            LTR
10486   chr1.94599485.94599890             L2b       LINE           LINE
10487   chr1.94616522.94616874            <NA>       <NA>           <NA>
10488   chr1.94621283.94621783            <NA>       <NA>           <NA>
10489   chr1.94622728.94623194          LTR16C        LTR            LTR
10490   chr1.94628140.94628420            <NA>       <NA>           <NA>
10491   chr1.94629662.94630258        L4_A_Mam       LINE           LINE
10492   chr1.94629662.94630258       (TTTACC)n      Other  Simple_repeat
10493   chr1.94642556.94643191             L2a       LINE           LINE
10494   chr1.94646171.94646688             L2c       LINE           LINE
10495   chr1.94648207.94648488            <NA>       <NA>           <NA>
10496   chr1.94653733.94654331            <NA>       <NA>           <NA>
10497   chr1.94657863.94658617           LTR7Y        LTR            LTR
10498   chr1.94657863.94658617            MIR3       SINE           SINE
10499   chr1.94661076.94661246            MIRc       SINE           SINE
10500   chr1.94698373.94699352             L2a       LINE           LINE
10501   chr1.94698373.94699352            MIRb       SINE           SINE
10502   chr1.94698373.94699352           AluJr       SINE           SINE
10503   chr1.94700853.94701044            <NA>       <NA>           <NA>
10504   chr1.94705800.94706067          LTR16C        LTR            LTR
10505   chr1.94709952.94710195            <NA>       <NA>           <NA>
10506   chr1.94713655.94714026             L2a       LINE           LINE
10507   chr1.94727818.94728456            MIRb       SINE           SINE
10508   chr1.94727818.94728456           LTR33        LTR            LTR
10509   chr1.94730430.94730757            AluY       SINE           SINE
10510   chr1.94730430.94730757          AluSz6       SINE           SINE
10511   chr1.94737277.94737744            <NA>       <NA>           <NA>
10512   chr1.94739600.94740122            <NA>       <NA>           <NA>
10513   chr1.94753433.94753977           MLT1O        LTR            LTR
10514   chr1.94755733.94756097             L2b       LINE           LINE
10515   chr1.94792556.94793630            MIRb       SINE           SINE
10516   chr1.94801536.94802669            L1MC       LINE           LINE
10517   chr1.94801536.94802669           MER96        DNA            DNA
10518   chr1.94806577.94806773            MIR3       SINE           SINE
10519   chr1.94806577.94806773       (TTTCCC)n      Other  Simple_repeat
10520   chr1.94806577.94806773          LTR35B        LTR            LTR
10521   chr1.94808215.94808416            <NA>       <NA>           <NA>
10522   chr1.94817789.94818045           L1MEh       LINE           LINE
10523   chr1.94817789.94818045      Charlie10b        DNA            DNA
10524   chr1.94817789.94818045           L1MEh       LINE           LINE
10525   chr1.94819661.94820671           L1MEh       LINE           LINE
10526   chr1.94819661.94820671             MIR       SINE           SINE
10527   chr1.94819661.94820671       (GCCCCG)n      Other  Simple_repeat
10528   chr1.94840383.94840992           AluJb       SINE           SINE
10529   chr1.94840383.94840992        MamRep38        DNA            DNA
10530   chr1.94840383.94840992        Tigger3a        DNA            DNA
10531   chr1.94846243.94846757           MER5B        DNA            DNA
10532   chr1.94846243.94846757      Charlie10b        DNA            DNA
10533   chr1.94851280.94851594             L2a       LINE           LINE
10534   chr1.94854270.94855487            MIRb       SINE           SINE
10535   chr1.94854270.94855487           MER20        DNA            DNA
10536   chr1.94854270.94855487       (CAGCCC)n      Other  Simple_repeat
10537   chr1.94854270.94855487           MER20        DNA            DNA
10538   chr1.94858409.94858518           (AC)n      Other  Simple_repeat
10539   chr1.94863247.94864461            <NA>       <NA>           <NA>
10540   chr1.94866346.94866782            <NA>       <NA>           <NA>
10541   chr1.94873720.94874349            <NA>       <NA>           <NA>
10542   chr1.94876422.94876673            <NA>       <NA>           <NA>
10543   chr1.94884149.94884499            <NA>       <NA>           <NA>
10544   chr1.94898583.94898990            <NA>       <NA>           <NA>
10545   chr1.94901857.94902426            <NA>       <NA>           <NA>
10546   chr1.94903389.94903879            <NA>       <NA>           <NA>
10547   chr1.94919266.94920333          UCON48      Other        Unknown
10548   chr1.94919266.94920333              L3       LINE           LINE
10549   chr1.94925562.94927885         GA-rich      Other Low_complexity
10550   chr1.94925562.94927885          (AGC)n      Other  Simple_repeat
10551   chr1.94925562.94927885       (GGCGCG)n      Other  Simple_repeat
10552   chr1.94925562.94927885       (CCCGCC)n      Other  Simple_repeat
10553   chr1.94938184.94938548             L2a       LINE           LINE
10554   chr1.94947231.94947951           MLT1O        LTR            LTR
10555   chr1.94947231.94947951           AluSx       SINE           SINE
10556   chr1.94949784.94949976           MER68        LTR            LTR
10557   chr1.94954009.94954966           (CA)n      Other  Simple_repeat
10558   chr1.94954009.94954966           (TC)n      Other  Simple_repeat
10559   chr1.94954009.94954966            (T)n      Other  Simple_repeat
10560   chr1.94954009.94954966              L2       LINE           LINE
10561   chr1.94955715.94956324           MLT1H        LTR            LTR
10562   chr1.94955715.94956324              L2       LINE           LINE
10563   chr1.94974690.94975314           MLT1G        LTR            LTR
10564   chr1.94974690.94975314           L1MB7       LINE           LINE
10565   chr1.94976949.94977361          MLT1E3        LTR            LTR
10566   chr1.94976949.94977361          FLAM_C       SINE           SINE
10567   chr1.94983395.94983641            MIRb       SINE           SINE
10568   chr1.94992758.94993187            MIRb       SINE           SINE
10569   chr1.95018500.95019045           AluSz       SINE           SINE
10570   chr1.95018500.95019045         (GGAA)n      Other  Simple_repeat
10571   chr1.95023536.95023970            <NA>       <NA>           <NA>
10572   chr1.95039466.95040125           AluJb       SINE           SINE
10573   chr1.95041514.95041843           AluJo       SINE           SINE
10574   chr1.95043298.95043893           MER20        DNA            DNA
10575   chr1.95061444.95061948           (GA)n      Other  Simple_repeat
10576   chr1.95061444.95061948           MLT1O        LTR            LTR
10577   chr1.95068947.95069254              L2       LINE           LINE
10578   chr1.95068947.95069254          FLAM_C       SINE           SINE
10579   chr1.95072400.95073645            (T)n      Other  Simple_repeat
10580   chr1.95084289.95084821            <NA>       <NA>           <NA>
10581   chr1.95086911.95087625           LTR48        LTR            LTR
10582   chr1.95094888.95095229            MIRb       SINE           SINE
10583   chr1.95116653.95118221       (GCCGGA)n      Other  Simple_repeat
10584   chr1.95116653.95118221           L1M4b       LINE           LINE
10585   chr1.95132570.95133230             L2b       LINE           LINE
10586   chr1.95132570.95133230           L1PA4       LINE           LINE
10587   chr1.95132570.95133230           L1PA4       LINE           LINE
10588   chr1.95138126.95138687        Tigger3b        DNA            DNA
10589   chr1.95169709.95169841           AluJb       SINE           SINE
10590   chr1.95179397.95179922          MER58A        DNA            DNA
10591   chr1.95179397.95179922             L2c       LINE           LINE
10592   chr1.95179397.95179922             L2c       LINE           LINE
10593   chr1.95197770.95198445            <NA>       <NA>           <NA>
10594   chr1.95207334.95207885             L2b       LINE           LINE
10595   chr1.95207334.95207885           MLT1D        LTR            LTR
10596   chr1.95223208.95223440            MIR3       SINE           SINE
10597   chr1.95233325.95234780             L2a       LINE           LINE
10598   chr1.95233325.95234780        (GCCCC)n      Other  Simple_repeat
10599   chr1.95237234.95237459            <NA>       <NA>           <NA>
10600   chr1.95247687.95248130            (T)n      Other  Simple_repeat
10601   chr1.95249978.95250250          LTR33B        LTR            LTR
10602   chr1.95282665.95282901            <NA>       <NA>           <NA>
10603   chr1.95308970.95309257            <NA>       <NA>           <NA>
10604   chr1.95323259.95323590             L2a       LINE           LINE
10605   chr1.95339957.95340399             L2b       LINE           LINE
10606   chr1.95352838.95353519             L2a       LINE           LINE
10607   chr1.95352838.95353519            MIRc       SINE           SINE
10608   chr1.95359351.95359739          MER97c        DNA            DNA
10609   chr1.95359351.95359739             L2a       LINE           LINE
10610   chr1.95360770.95361175        MIR1_Amn       SINE           SINE
10611   chr1.95384541.95384983            <NA>       <NA>           <NA>
10612   chr1.95406585.95408105             L2c       LINE           LINE
10613   chr1.95406585.95408105             MIR       SINE           SINE
10614   chr1.95451887.95452357            <NA>       <NA>           <NA>
10615   chr1.95473261.95474028       Tigger11a        DNA            DNA
10616   chr1.95473261.95474028          (AAC)n      Other  Simple_repeat
10617   chr1.95473261.95474028             MIR       SINE           SINE
10618   chr1.95473261.95474028            MIR3       SINE           SINE
10619   chr1.95500269.95500508          MER65B        LTR            LTR
10620   chr1.95535114.95535608          LTR16C        LTR            LTR
10621   chr1.95537091.95537502            <NA>       <NA>           <NA>
10622   chr1.95547056.95547641            <NA>       <NA>           <NA>
10623   chr1.95549083.95549634             L2c       LINE           LINE
10624   chr1.95627323.95627691             L2a       LINE           LINE
10625   chr1.95631558.95632203           L1PA8       LINE           LINE
10626   chr1.95640822.95641383            <NA>       <NA>           <NA>
10627   chr1.95693696.95694312            <NA>       <NA>           <NA>
10628   chr1.95742701.95743254           L1PB1       LINE           LINE
10629   chr1.95742701.95743254           L1PB1       LINE           LINE
10630   chr1.95841077.95842310          L1MA4A       LINE           LINE
10631   chr1.95841077.95842310        (GCTCT)n      Other  Simple_repeat
10632   chr1.95841077.95842310          MLT1H2        LTR            LTR
10633   chr1.95935708.95936357             L2c       LINE           LINE
10634   chr1.95935708.95936357           MSTB2        LTR            LTR
10635   chr1.95949269.95949560            <NA>       <NA>           <NA>
10636   chr1.95953092.95953440           (GT)n      Other  Simple_repeat
10637   chr1.95974641.95974949           L1PA8       LINE           LINE
10638   chr1.95990055.95990509            MIRc       SINE           SINE
10639   chr1.95990055.95990509        AmnSINE1       SINE           SINE
10640   chr1.95990055.95990509              L3       LINE           LINE
10641   chr1.95991967.95992829             L2a       LINE           LINE
10642   chr1.96074405.96075395         UCON12A      Other        Unknown
10643   chr1.96116779.96117150            <NA>       <NA>           <NA>
10644   chr1.96127287.96127681         Tigger1        DNA            DNA
10645   chr1.96128661.96129217              L2       LINE           LINE
10646   chr1.96128661.96129217           MLT1H        LTR            LTR
10647   chr1.96234229.96234794            MIRc       SINE           SINE
10648   chr1.96234229.96234794          MER134      Other           DNA?
10649   chr1.96362430.96363173             L2a       LINE           LINE
10650   chr1.96362430.96363173          AluSx1       SINE           SINE
10651   chr1.96370374.96371220           MER50        LTR            LTR
10652   chr1.96370374.96371220            (C)n      Other  Simple_repeat
10653   chr1.96370374.96371220             L3b       LINE           LINE
10654   chr1.96370374.96371220            AluY       SINE           SINE
10655   chr1.96388875.96389217           MLT1J        LTR            LTR
10656   chr1.96414627.96414962          LTR16C        LTR            LTR
10657   chr1.96416016.96416590          MLT1J2        LTR            LTR
10658   chr1.96445124.96445579           LTR33        LTR            LTR
10659   chr1.96472436.96472756           LTR54        LTR            LTR
10660   chr1.96472436.96472756           MLT1D        LTR            LTR
10661   chr1.96473918.96474292            <NA>       <NA>           <NA>
10662   chr1.96522105.96522789             L2c       LINE           LINE
10663   chr1.96522105.96522789             L2b       LINE           LINE
10664   chr1.96524022.96524513         OldhAT1        DNA            DNA
10665   chr1.96524022.96524513         (AGTG)n      Other  Simple_repeat
10666   chr1.96538092.96538900            MIR3       SINE           SINE
10667   chr1.96538092.96538900           MLT1I        LTR            LTR
10668   chr1.96579684.96579911           MLT1I        LTR            LTR
10669   chr1.96584375.96584952         AluYk11       SINE           SINE
10670   chr1.96584375.96584952              L3       LINE           LINE
10671   chr1.96596308.96596555        Tigger12        DNA            DNA
10672   chr1.96634837.96635197          MER45A        DNA            DNA
10673   chr1.96634837.96635197            MIRb       SINE           SINE
10674   chr1.96660403.96660787         LTR47A2        LTR            LTR
10675   chr1.96710805.96711509              L3       LINE           LINE
10676   chr1.96710805.96711509      CR1-3_Croc       LINE           LINE
10677   chr1.96710805.96711509             L2a       LINE           LINE
10678   chr1.96721212.96722855          (CGC)n      Other  Simple_repeat
10679   chr1.96721212.96722855          G-rich      Other Low_complexity
10680   chr1.96741300.96741939           AluJb       SINE           SINE
10681   chr1.96741300.96741939         (TTGT)n      Other  Simple_repeat
10682   chr1.96741300.96741939            L1M5       LINE           LINE
10683   chr1.96762722.96763559           SVA_D Retroposon     Retroposon
10684   chr1.96800549.96800712           AluJr       SINE           SINE
10685   chr1.96819198.96819476            <NA>       <NA>           <NA>
10686   chr1.96845393.96845862            <NA>       <NA>           <NA>
10687   chr1.96862691.96863367          L1MA4A       LINE           LINE
10688   chr1.96951972.96952257         Plat_L3       LINE           LINE
10689   chr1.96951972.96952257             L3b       LINE           LINE
10690   chr1.96951972.96952257           (GT)n      Other  Simple_repeat
10691   chr1.96951972.96952257             L3b       LINE           LINE
10692   chr1.96966642.96967027          L1PA12       LINE           LINE
10693   chr1.96966642.96967027          AluSx1       SINE           SINE
10694   chr1.96973390.96974092          LTR81C        LTR            LTR
10695   chr1.96973390.96974092           LTR81        LTR            LTR
10696   chr1.96992813.96993293           MER39        LTR            LTR
10697   chr1.96992813.96993293              L2       LINE           LINE
10698   chr1.96995413.96995816            <NA>       <NA>           <NA>
10699   chr1.96997781.96998250         OldhAT1        DNA            DNA
10700   chr1.96997781.96998250          UCON46      Other        Unknown
10701   chr1.96998863.96999450          MLT1G1        LTR            LTR
10702   chr1.96998863.96999450          MER112        DNA            DNA
10703   chr1.96998863.96999450            MIR3       SINE           SINE
10704   chr1.97004182.97004569             L2a       LINE           LINE
10705   chr1.97005947.97006534            <NA>       <NA>           <NA>
10706   chr1.97050573.97050886            <NA>       <NA>           <NA>
10707   chr1.97061556.97062098          MER61D        LTR            LTR
10708   chr1.97094335.97094755              L2       LINE           LINE
10709   chr1.97138207.97138932            <NA>       <NA>           <NA>
10710   chr1.97168229.97168476              L3       LINE           LINE
10711   chr1.97168229.97168476            MIRb       SINE           SINE
10712   chr1.97190415.97190630           MER5A        DNA            DNA
10713   chr1.97192780.97193395             L2a       LINE           LINE
10714   chr1.97192780.97193395           L1ME1       LINE           LINE
10715   chr1.97197658.97197953            <NA>       <NA>           <NA>
10716   chr1.97210418.97210863             L2b       LINE           LINE
10717   chr1.97245800.97246253       (TTCACT)n      Other  Simple_repeat
10718   chr1.97247137.97247684            MIRb       SINE           SINE
10719   chr1.97247137.97247684           L1ME2       LINE           LINE
10720   chr1.97270702.97271276             L2c       LINE           LINE
10721   chr1.97277620.97278545              L2       LINE           LINE
10722   chr1.97297196.97297702            <NA>       <NA>           <NA>
10723   chr1.97332756.97333211        Tigger12        DNA            DNA
10724   chr1.97332756.97333211          AluSx3       SINE           SINE
10725   chr1.97334372.97334997            MIRb       SINE           SINE
10726   chr1.97334372.97334997             L2a       LINE           LINE
10727   chr1.97340899.97341480           (TC)n      Other  Simple_repeat
10728   chr1.97348542.97349137            MIRb       SINE           SINE
10729   chr1.97384037.97384836           AluJo       SINE           SINE
10730   chr1.97384037.97384836             L2a       LINE           LINE
10731   chr1.97507918.97508364      CR1-3_Croc       LINE           LINE
10732   chr1.97507918.97508364             L2a       LINE           LINE
10733   chr1.97508576.97509391            MIR3       SINE           SINE
10734   chr1.97508576.97509391            MIRb       SINE           SINE
10735   chr1.97508576.97509391           MLT1H        LTR            LTR
10736   chr1.97508576.97509391       MLT1H-int        LTR            LTR
10737   chr1.97518197.97518525          A-rich      Other Low_complexity
10738   chr1.97518197.97518525           (AC)n      Other  Simple_repeat
10739   chr1.97525487.97525946             L2c       LINE           LINE
10740   chr1.97525487.97525946           (AG)n      Other  Simple_repeat
10741   chr1.97525487.97525946           (GT)n      Other  Simple_repeat
10742   chr1.97567376.97567590            <NA>       <NA>           <NA>
10743   chr1.97581440.97582113             L2c       LINE           LINE
10744   chr1.97581440.97582113           AluJr       SINE           SINE
10745   chr1.97581440.97582113             L2c       LINE           LINE
10746   chr1.97581440.97582113          LTR80B        LTR            LTR
10747   chr1.97630795.97631437            <NA>       <NA>           <NA>
10748   chr1.97632044.97632500            <NA>       <NA>           <NA>
10749   chr1.97680549.97681332 ERV3-16A3_I-int        LTR            LTR
10750   chr1.97680549.97681332             MIR       SINE           SINE
10751   chr1.97767321.97767713           MLT1H        LTR            LTR
10752   chr1.97796772.97797720          UCON96      Other        Unknown
10753   chr1.97849813.97850277            <NA>       <NA>           <NA>
10754   chr1.97920475.97921584        (GCGGC)n      Other  Simple_repeat
10755   chr1.97937978.97938422            <NA>       <NA>           <NA>
10756   chr1.97999315.97999813             L2a       LINE           LINE
10757   chr1.97999315.97999813             L2a       LINE           LINE
10758   chr1.98030515.98030831            <NA>       <NA>           <NA>
10759   chr1.98044436.98045790         (AAAC)n      Other  Simple_repeat
10760   chr1.98045922.98046482       (GCTGCC)n      Other  Simple_repeat
10761   chr1.98048211.98048688      (CCTCCAC)n      Other  Simple_repeat
10762   chr1.98053042.98054560           (TG)n      Other  Simple_repeat
10763   chr1.98053042.98054560           (GA)n      Other  Simple_repeat
10764   chr1.98053042.98054560          A-rich      Other Low_complexity
10765   chr1.98059761.98059883            <NA>       <NA>           <NA>
10766   chr1.98086288.98086401          AluSz6       SINE           SINE
10767   chr1.98086555.98087319           (AT)n      Other  Simple_repeat
10768   chr1.98086555.98087319             L2b       LINE           LINE
10769   chr1.98133005.98133600            <NA>       <NA>           <NA>
10770   chr1.98143361.98143809            <NA>       <NA>           <NA>
10771   chr1.98197288.98197999              L2       LINE           LINE
10772   chr1.98210008.98210748            (T)n      Other  Simple_repeat
10773   chr1.98221776.98222375          MER5A1        DNA            DNA
10774   chr1.98221776.98222375         GA-rich      Other Low_complexity
10775   chr1.98263751.98264219             MIR       SINE           SINE
10776   chr1.98277114.98277573          PABL_A        LTR            LTR
10777   chr1.98293184.98293470            MIRc       SINE           SINE
10778   chr1.98316245.98316703            <NA>       <NA>           <NA>
10779   chr1.98323458.98324383             L2a       LINE           LINE
10780   chr1.98323458.98324383           MLT2F        LTR            LTR
10781   chr1.98325924.98326405      Charlie23a        DNA            DNA
10782   chr1.98325924.98326405          AluJr4       SINE           SINE
10783   chr1.98367423.98368137          MER52A        LTR            LTR
10784   chr1.98374020.98374364        Tigger3b        DNA            DNA
10785   chr1.98380222.98380889            MIR3       SINE           SINE
10786   chr1.98380222.98380889             MIR       SINE           SINE
10787   chr1.98386777.98387383             L2a       LINE           LINE
10788   chr1.98389723.98390180             L2a       LINE           LINE
10789   chr1.98460116.98460439            <NA>       <NA>           <NA>
10790   chr1.98523290.98523571           L1MA3       LINE           LINE
10791   chr1.98523290.98523571             L2a       LINE           LINE
10792   chr1.98552692.98553135            L1P2       LINE           LINE
10793   chr1.98557861.98558327           L1MEc       LINE           LINE
10794   chr1.98661067.98662560          (GGC)n      Other  Simple_repeat
10795   chr1.98692448.98692732    Tigger2b_Pri        DNA            DNA
10796   chr1.98763590.98764112           MER20        DNA            DNA
10797   chr1.98794355.98794883            MIRb       SINE           SINE
10798   chr1.98839935.98840786          (CAA)n      Other  Simple_repeat
10799   chr1.98963071.98963796             L2c       LINE           LINE
10800   chr1.98963071.98963796             MIR       SINE           SINE
10801   chr1.98989063.98989868       MER31-int        LTR            LTR
10802   chr1.98989063.98989868           LTR54        LTR            LTR
10803   chr1.98991521.98992058              L3       LINE           LINE
10804   chr1.98991521.98992058            MIRb       SINE           SINE
10805   chr1.99004197.99005839        (CCGAG)n      Other  Simple_repeat
10806   chr1.99004197.99005839      (GCCCCCT)n      Other  Simple_repeat
10807   chr1.99004197.99005839          (CGG)n      Other  Simple_repeat
10808   chr1.99004197.99005839         (TATA)n      Other  Simple_repeat
10809   chr1.99180373.99180785            <NA>       <NA>           <NA>
10810   chr1.99263991.99264968            <NA>       <NA>           <NA>
10811   chr1.99279565.99279800            <NA>       <NA>           <NA>
10812   chr1.99326456.99326951            <NA>       <NA>           <NA>
10813   chr1.99348620.99349067           LTR06        LTR            LTR
10814   chr1.99359788.99360196            MIRb       SINE           SINE
10815   chr1.99359788.99360196             L2c       LINE           LINE
10816   chr1.99396998.99397435              L3       LINE           LINE
10817   chr1.99396998.99397435             MIR       SINE           SINE
10818   chr1.99397961.99398221        L4_A_Mam       LINE           LINE
10819   chr1.99438738.99438961      MLT1E2-int        LTR            LTR
10820   chr1.99439622.99439985          MLT1E2        LTR            LTR
10821   chr1.99441748.99442033             MIR       SINE           SINE
10822   chr1.99465299.99465849              L3       LINE           LINE
10823   chr1.99465299.99465849           MLT1C        LTR            LTR
10824   chr1.99470816.99471572             L2a       LINE           LINE
10825   chr1.99470816.99471572            MIRb       SINE           SINE
10826   chr1.99470816.99471572            MIRb       SINE           SINE
10827   chr1.99481314.99481655            <NA>       <NA>           <NA>
10828   chr1.99503165.99503667            MIR3       SINE           SINE
10829   chr1.99528924.99529389             MIR       SINE           SINE
10830   chr1.99528924.99529389           MLT1B        LTR            LTR
10831   chr1.99544414.99544725            <NA>       <NA>           <NA>
10832   chr1.99549000.99549504            <NA>       <NA>           <NA>
10833   chr1.99580395.99580980            <NA>       <NA>           <NA>
10834   chr1.99590729.99591404           L1MEi       LINE           LINE
10835   chr1.99590729.99591404           MER20        DNA            DNA
10836   chr1.99599659.99600151            <NA>       <NA>           <NA>
10837   chr1.99623435.99623789            <NA>       <NA>           <NA>
10838   chr1.99645805.99646567            <NA>       <NA>           <NA>
10839   chr1.99657140.99657859            <NA>       <NA>           <NA>
10840   chr1.99677436.99677717           MLT1J        LTR            LTR
10841   chr1.99680095.99680679            <NA>       <NA>           <NA>
10842   chr1.99682271.99682782           AluSz       SINE           SINE
10843   chr1.99685468.99686130         MamRTE1       LINE           LINE
10844   chr1.99685468.99686130         MamRTE1       LINE           LINE
10845   chr1.99691086.99691635            <NA>       <NA>           <NA>
10846   chr1.99707478.99707821            <NA>       <NA>           <NA>
10847   chr1.99727793.99728307           LTR87        LTR            LTR
10848   chr1.99737083.99737418            <NA>       <NA>           <NA>
10849   chr1.99741296.99741651            <NA>       <NA>           <NA>
10850   chr1.99766137.99766758            <NA>       <NA>           <NA>
10851   chr1.99768137.99768978            LTR8        LTR            LTR
10852   chr1.99768137.99768978           AluSg       SINE           SINE
10853   chr1.99771324.99771866          MER65D        LTR            LTR
10854   chr1.99781630.99782192          MER51E        LTR            LTR
10855   chr1.99781630.99782192          FLAM_C       SINE           SINE
10856   chr1.99784109.99784561           AluJo       SINE           SINE
10857   chr1.99784109.99784561              L3       LINE           LINE
10858   chr1.99808495.99809409          MLT1F2        LTR            LTR
10859   chr1.99808495.99809409          LTR88b        LTR            LTR
10860   chr1.99818067.99818575            <NA>       <NA>           <NA>
10861   chr1.99849535.99850677            <NA>       <NA>           <NA>
10862   chr1.99856026.99856264            <NA>       <NA>           <NA>
10863   chr1.99856540.99856933           SVA_C Retroposon     Retroposon
10864   chr1.99886952.99887593           MER5A        DNA            DNA
10865   chr1.99935655.99935820          LTR28C        LTR            LTR
10866   chr1.99943030.99943748      MER34B-int        LTR            LTR
10867   chr1.99943030.99943748          FLAM_C       SINE           SINE
10868   chr1.99943030.99943748           LTR45        LTR            LTR
10869   chr1.99943030.99943748          LTR14B        LTR            LTR
10870   chr1.99963105.99963465           L1MB4       LINE           LINE
10871   chr1.99963105.99963465       MLT1I-int        LTR            LTR
10872   chr1.99969463.99970679          (GGA)n      Other  Simple_repeat
10873   chr1.99972480.99972762           AluSz       SINE           SINE
10874   chr1.99986812.99987203           AluJb       SINE           SINE
10875   chr1.99986812.99987203            MIR3       SINE           SINE
10876 chr1.100009480.100010011            MER3        DNA            DNA
10877 chr1.100009480.100010011            MER3        DNA            DNA
10878 chr1.100036901.100037312          MLT1F1        LTR            LTR
10879 chr1.100036901.100037312           L1MC4       LINE           LINE
10880 chr1.100037697.100039199            MIRb       SINE           SINE
10881 chr1.100049468.100049780             L2c       LINE           LINE
10882 chr1.100099756.100100571           AluSz       SINE           SINE
10883 chr1.100099756.100100571         (TGAA)n      Other  Simple_repeat
10884 chr1.100099756.100100571             L2a       LINE           LINE
10885 chr1.100132504.100133569            <NA>       <NA>           <NA>
10886 chr1.100177774.100178533            MIRc       SINE           SINE
10887 chr1.100188527.100189545             L3b       LINE           LINE
10888 chr1.100188527.100189545           AluSz       SINE           SINE
10889 chr1.100213232.100214093            (A)n      Other  Simple_repeat
10890 chr1.100213232.100214093            MIRb       SINE           SINE
10891 chr1.100213232.100214093             L2b       LINE           LINE
10892 chr1.100217735.100218360            MIRb       SINE           SINE
10893 chr1.100217735.100218360            MIRb       SINE           SINE
10894 chr1.100217735.100218360         LTR16A1        LTR            LTR
10895 chr1.100217735.100218360        (TTCTC)n      Other  Simple_repeat
10896 chr1.100217735.100218360            MIRb       SINE           SINE
10897 chr1.100229612.100229932            <NA>       <NA>           <NA>
10898 chr1.100248974.100250238             L2c       LINE           LINE
10899 chr1.100248974.100250238             L2c       LINE           LINE
10900 chr1.100248974.100250238             L2a       LINE           LINE
10901 chr1.100265586.100267021            <NA>       <NA>           <NA>
10902 chr1.100279363.100280604           AluJr       SINE           SINE
10903 chr1.100279363.100280604             L2b       LINE           LINE
10904 chr1.100351158.100353317          AluSz6       SINE           SINE
10905 chr1.100351158.100353317        MamSINE1       SINE           SINE
10906 chr1.100351158.100353317           (GT)n      Other  Simple_repeat
10907 chr1.100351158.100353317       (AGAAAG)n      Other  Simple_repeat
10908 chr1.100354075.100354254            <NA>       <NA>           <NA>
10909 chr1.100354992.100355301            <NA>       <NA>           <NA>
10910 chr1.100360726.100361197       Tigger19b        DNA            DNA
10911 chr1.100360726.100361197          A-rich      Other Low_complexity
10912 chr1.100379029.100379431            <NA>       <NA>           <NA>
10913 chr1.100380389.100380883             L2c       LINE           LINE
10914 chr1.100391601.100392026            MIR3       SINE           SINE
10915 chr1.100400467.100400752            <NA>       <NA>           <NA>
10916 chr1.100416868.100417335             MIR       SINE           SINE
10917 chr1.100416868.100417335             L2c       LINE           LINE
10918 chr1.100416868.100417335             L2a       LINE           LINE
10919 chr1.100440173.100440407           MER5A        DNA            DNA
10920 chr1.100443753.100444570             L2a       LINE           LINE
10921 chr1.100459147.100459816           (GA)n      Other  Simple_repeat
10922 chr1.100459147.100459816            MIRb       SINE           SINE
10923 chr1.100459147.100459816            MIR3       SINE           SINE
10924 chr1.100463716.100464273            <NA>       <NA>           <NA>
10925 chr1.100469528.100469923            <NA>       <NA>           <NA>
10926 chr1.100538652.100540200       (CCACCT)n      Other  Simple_repeat
10927 chr1.100538652.100540200          (GCT)n      Other  Simple_repeat
10928 chr1.100596990.100598173             L2c       LINE           LINE
10929 chr1.100596990.100598173          MLT1J2        LTR            LTR
10930 chr1.100596990.100598173             L2a       LINE           LINE
10931 chr1.100606395.100606852            <NA>       <NA>           <NA>
10932 chr1.100607398.100607891          (AAT)n      Other  Simple_repeat
10933 chr1.100621903.100622579            <NA>       <NA>           <NA>
10934 chr1.100706274.100707646            MIRc       SINE           SINE
10935 chr1.100719419.100720097            <NA>       <NA>           <NA>
10936 chr1.100757774.100758413            (T)n      Other  Simple_repeat
10937 chr1.100759191.100759528            MIRb       SINE           SINE
10938 chr1.100760528.100760865            <NA>       <NA>           <NA>
10939 chr1.100785608.100786091           MER72        LTR            LTR
10940 chr1.100795486.100796250             L2c       LINE           LINE
10941 chr1.100799994.100800372            <NA>       <NA>           <NA>
10942 chr1.100810363.100810973 ERV3-16A3_I-int        LTR            LTR
10943 chr1.100860214.100860840            MSTA        LTR            LTR
10944 chr1.100884036.100884289            <NA>       <NA>           <NA>
10945 chr1.100894620.100896924           AluJb       SINE           SINE
10946 chr1.100894620.100896924         (GTGT)n      Other  Simple_repeat
10947 chr1.100924233.100924560             L2b       LINE           LINE
10948 chr1.100949592.100949886           L1PA6       LINE           LINE
10949 chr1.100959457.100959850          MLT1F2        LTR            LTR
10950 chr1.100959457.100959850             L2c       LINE           LINE
10951 chr1.100982792.100983211            <NA>       <NA>           <NA>
10952 chr1.100989401.100990488           THE1D        LTR            LTR
10953 chr1.101002434.101003357            MIRc       SINE           SINE
10954 chr1.101002434.101003357            MIR3       SINE           SINE
10955 chr1.101002434.101003357       Tigger16b        DNA            DNA
10956 chr1.101002434.101003357             L2a       LINE           LINE
10957 chr1.101025261.101026560            <NA>       <NA>           <NA>
10958 chr1.101039177.101039643             L2c       LINE           LINE
10959 chr1.101039177.101039643        Tigger12        DNA            DNA
10960 chr1.101039177.101039643            MSTA        LTR            LTR
10961 chr1.101043451.101044123             L2c       LINE           LINE
10962 chr1.101086710.101087108            <NA>       <NA>           <NA>
10963 chr1.101111339.101112387            <NA>       <NA>           <NA>
10964 chr1.101128278.101128639            <NA>       <NA>           <NA>
10965 chr1.101130479.101131629      Charlie17a        DNA            DNA
10966 chr1.101130479.101131629             L2c       LINE           LINE
10967 chr1.101130479.101131629             L2b       LINE           LINE
10968 chr1.101130479.101131629          (ACC)n      Other  Simple_repeat
10969 chr1.101136741.101137846           (TC)n      Other  Simple_repeat
10970 chr1.101136741.101137846             L2b       LINE           LINE
10971 chr1.101136741.101137846             MIR       SINE           SINE
10972 chr1.101145323.101145762             MIR       SINE           SINE
10973 chr1.101148896.101149628     LFSINE_Vert       SINE           SINE
10974 chr1.101150749.101151062            <NA>       <NA>           <NA>
10975 chr1.101152556.101153215       Charlie2b        DNA            DNA
10976 chr1.101152556.101153215             MIR       SINE           SINE
10977 chr1.101165721.101166384             MIR       SINE           SINE
10978 chr1.101165721.101166384        L2-3_Crp       LINE           LINE
10979 chr1.101165721.101166384             L2a       LINE           LINE
10980 chr1.101166637.101166982          MLT1J2        LTR            LTR
10981 chr1.101174788.101175281          MLT1H1        LTR            LTR
10982 chr1.101183278.101183670            <NA>       <NA>           <NA>
10983 chr1.101185412.101185708            <NA>       <NA>           <NA>
10984 chr1.101190384.101190782             L2a       LINE           LINE
10985 chr1.101200575.101200843            <NA>       <NA>           <NA>
10986 chr1.101203940.101204778             L2b       LINE           LINE
10987 chr1.101203940.101204778             L2b       LINE           LINE
10988 chr1.101203940.101204778             L2c       LINE           LINE
10989 chr1.101203940.101204778         MamRTE1       LINE           LINE
10990 chr1.101203940.101204778            MIRb       SINE           SINE
10991 chr1.101217269.101217845             L2a       LINE           LINE
10992 chr1.101220269.101220825             L2a       LINE           LINE
10993 chr1.101223393.101223794          MLT1F1        LTR            LTR
10994 chr1.101223393.101223794           (TC)n      Other  Simple_repeat
10995 chr1.101223393.101223794          (CTC)n      Other  Simple_repeat
10996 chr1.101235411.101237597            (T)n      Other  Simple_repeat
10997 chr1.101235411.101237597            (T)n      Other  Simple_repeat
10998 chr1.101238692.101239629            <NA>       <NA>           <NA>
10999 chr1.101244882.101245317           AluJb       SINE           SINE
11000 chr1.101254017.101254311             MIR       SINE           SINE
11001 chr1.101254017.101254311            MIR3       SINE           SINE
11002 chr1.101257859.101258407           AluJb       SINE           SINE
11003 chr1.101259682.101260134            MIRb       SINE           SINE
11004 chr1.101259682.101260134          FLAM_C       SINE           SINE
11005 chr1.101260530.101260953            <NA>       <NA>           <NA>
11006 chr1.101262812.101263090            <NA>       <NA>           <NA>
11007 chr1.101264724.101265102            <NA>       <NA>           <NA>
11008 chr1.101288084.101288896          AluSx3       SINE           SINE
11009 chr1.101288084.101288896         MER102c        DNA            DNA
11010 chr1.101291557.101291931           MARNA        DNA            DNA
11011 chr1.101291557.101291931             L2c       LINE           LINE
11012 chr1.101302614.101303399             MIR       SINE           SINE
11013 chr1.101302614.101303399            MIRb       SINE           SINE
11014 chr1.101302614.101303399         Eulor5A      Other           DNA?
11015 chr1.101307409.101308123           MER39        LTR            LTR
11016 chr1.101309404.101310211            <NA>       <NA>           <NA>
11017 chr1.101314302.101314666           MLT1J        LTR            LTR
11018 chr1.101357297.101357839            <NA>       <NA>           <NA>
11019 chr1.101366654.101367063            <NA>       <NA>           <NA>
11020 chr1.101371205.101371558            <NA>       <NA>           <NA>
11021 chr1.101389126.101389722           MER5A        DNA            DNA
11022 chr1.101389126.101389722           MER5A        DNA            DNA
11023 chr1.101389126.101389722           MER5A        DNA            DNA
11024 chr1.101389126.101389722            MIRb       SINE           SINE
11025 chr1.101389126.101389722           THE1B        LTR            LTR
11026 chr1.101407843.101408432            <NA>       <NA>           <NA>
11027 chr1.101420574.101420889           MLT2D        LTR            LTR
11028 chr1.101422498.101422929       Ricksha_c        DNA            DNA
11029 chr1.101437340.101438674              L3       LINE           LINE
11030 chr1.101444548.101445587       MER21-int        LTR            LTR
11031 chr1.101444548.101445587           MER50        LTR            LTR
11032 chr1.101474123.101474297            <NA>       <NA>           <NA>
11033 chr1.101482252.101482826          MER21B        LTR            LTR
11034 chr1.101482252.101482826           LTR36        LTR            LTR
11035 chr1.101507303.101508111           MLT1F        LTR            LTR
11036 chr1.101520214.101520745           L1MA4       LINE           LINE
11037 chr1.101526687.101527129           MLT1H        LTR            LTR
11038 chr1.101547661.101547882      ERVL-E-int        LTR            LTR
11039 chr1.101588605.101588965           LTR53        LTR            LTR
11040 chr1.101632633.101632885            <NA>       <NA>           <NA>
11041 chr1.101635408.101635974             L2c       LINE           LINE
11042 chr1.101635408.101635974             L2c       LINE           LINE
11043 chr1.101653499.101653723           L1MA4       LINE           LINE
11044 chr1.101683484.101684163           MER94        DNA            DNA
11045 chr1.101781337.101781766            <NA>       <NA>           <NA>
11046 chr1.101820051.101820517             L2a       LINE           LINE
11047 chr1.101846820.101847251            <NA>       <NA>           <NA>
11048 chr1.101849345.101849763              L2       LINE           LINE
11049 chr1.101875635.101876345            <NA>       <NA>           <NA>
11050 chr1.101996550.101997352          (AGC)n      Other  Simple_repeat
11051 chr1.102045793.102046080          MER50C        LTR            LTR
11052 chr1.102085885.102086209         LTR10B2        LTR            LTR
11053 chr1.102120699.102121434            L1M2       LINE           LINE
11054 chr1.102191542.102192193          A-rich      Other Low_complexity
11055 chr1.102252578.102253605          AluSx1       SINE           SINE
11056 chr1.102252578.102253605           L1MC1       LINE           LINE
11057 chr1.102333858.102334576           (AC)n      Other  Simple_repeat
11058 chr1.102380376.102380757            <NA>       <NA>           <NA>
11059 chr1.102434303.102434762    HUERS-P3-int        LTR            LTR
11060 chr1.102531169.102531498            <NA>       <NA>           <NA>
11061 chr1.102550826.102551025        THE1-int        LTR            LTR
11062 chr1.102550826.102551025        THE1-int        LTR            LTR
11063 chr1.102707247.102707534          L1PA13       LINE           LINE
11064 chr1.102732923.102733403         GA-rich      Other Low_complexity
11065 chr1.102732923.102733403       Charlie7a        DNA            DNA
11066 chr1.102761970.102762300            MIRc       SINE           SINE
11067 chr1.102761970.102762300            MIRb       SINE           SINE
11068 chr1.102796970.102797152              L3       LINE           LINE
11069 chr1.102821703.102822084         MLT1E1A        LTR            LTR
11070 chr1.102851463.102852042      LTR101_Mam        LTR            LTR
11071 chr1.102851463.102852042      LTR101_Mam        LTR            LTR
11072 chr1.102879492.102880081            MIR3       SINE           SINE
11073 chr1.102892084.102892622            MIRb       SINE           SINE
11074 chr1.102919757.102920060            MIRb       SINE           SINE
11075 chr1.102941322.102941905             L2c       LINE           LINE
11076 chr1.102966722.102967030              L2       LINE           LINE
11077 chr1.103058281.103059008         Tigger1        DNA            DNA
11078 chr1.103087323.103087600             L2b       LINE           LINE
11079 chr1.103106446.103107239            <NA>       <NA>           <NA>
11080 chr1.103108097.103109280       (CCCGCT)n      Other  Simple_repeat
11081 chr1.103108097.103109280      (CCCACCT)n      Other  Simple_repeat
11082 chr1.103171203.103171454           MLT1I        LTR            LTR
11083 chr1.103180667.103181082    tRNA-Gly-GGA      Other           tRNA
11084 chr1.103191211.103191836            <NA>       <NA>           <NA>
11085 chr1.103231816.103232332             L2a       LINE           LINE
11086 chr1.103250367.103250848         LTR33A_        LTR            LTR
11087 chr1.103250367.103250848         LTR33A_        LTR            LTR
11088 chr1.103371214.103371545          MER21A        LTR            LTR
11089 chr1.103371214.103371545          MER21A        LTR            LTR
11090 chr1.103525193.103526502            <NA>       <NA>           <NA>
11091 chr1.103529838.103530010           MER1B        DNA            DNA
11092 chr1.103569714.103570587            <NA>       <NA>           <NA>
11093 chr1.103580447.103580812          MER70B        LTR            LTR
11094 chr1.104057287.104057696            L1P3       LINE           LINE
11095 chr1.104132383.104132674           L1MD2       LINE           LINE
11096 chr1.104135075.104135461         LTR5_Hs        LTR            LTR
11097 chr1.104179256.104179706           L1MA7       LINE           LINE
11098 chr1.104195500.104195724           AluJr       SINE           SINE
11099 chr1.104195500.104195724         MamRTE1       LINE           LINE
11100 chr1.104239101.104239320            MIR3       SINE           SINE
11101 chr1.104255719.104256229           LTR52        LTR            LTR
11102 chr1.104269838.104270240           L1ME3       LINE           LINE
11103 chr1.104269838.104270240           AluSx       SINE           SINE
11104 chr1.104648313.104648725            <NA>       <NA>           <NA>
11105 chr1.104671838.104672421          MLT1N2        LTR            LTR
11106 chr1.104921619.104921869       (TATGTA)n      Other  Simple_repeat
11107 chr1.105137457.105138076          LTR18C        LTR            LTR
11108 chr1.105137457.105138076     HERVL18-int        LTR            LTR
11109 chr1.105172885.105173179            <NA>       <NA>           <NA>
11110 chr1.105344552.105344828        Tigger3b        DNA            DNA
11111 chr1.105373799.105374046           L1MB3       LINE           LINE
           repFamily width    TEstatus       mrc       per_ol
1      Simple_repeat   181     TE_peak        NR 0.1989010989
2               telo   247     TE_peak        NR 0.2515274949
3               <NA>    NA not_TE_peak        NR           NA
4               <NA>    NA not_TE_peak        NR           NA
5               <NA>    NA not_TE_peak        NR           NA
6               <NA>    NA not_TE_peak        NR           NA
7               <NA>    NA not_TE_peak        NR           NA
8                Alu    71     TE_peak        NR 0.3776595745
9               <NA>    NA not_TE_peak        NR           NA
10    Low_complexity    88     TE_peak        NR 1.0000000000
11              <NA>    NA not_TE_peak ESR_close           NA
12              <NA>    NA not_TE_peak        NR           NA
13         ERVL-MaLR   170     TE_peak        NR 1.0000000000
14               MIR    72     TE_peak        NR 0.6792452830
15              <NA>    NA not_TE_peak  EAR_open           NA
16              <NA>    NA not_TE_peak        NR           NA
17              <NA>    NA not_TE_peak  LR_close           NA
18              <NA>    NA not_TE_peak        NR           NA
19              <NA>    NA not_TE_peak        NR           NA
20     Simple_repeat    39     TE_peak        NR 1.0000000000
21     Simple_repeat    20     TE_peak        NR 1.0000000000
22     Simple_repeat    43     TE_peak   LR_open 1.0000000000
23              <NA>    NA not_TE_peak        NR           NA
24              <NA>    NA not_TE_peak  LR_close           NA
25              <NA>    NA not_TE_peak        NR           NA
26     Simple_repeat    50     TE_peak        NR 1.0000000000
27              <NA>    NA not_TE_peak  EAR_open           NA
28     Simple_repeat    48     TE_peak        NR 1.0000000000
29     Simple_repeat    50     TE_peak        NR 0.8064516129
30              <NA>    NA not_TE_peak        NR           NA
31     Simple_repeat    28     TE_peak        NR 1.0000000000
32     Simple_repeat    33     TE_peak        NR 0.7857142857
33              <NA>    NA not_TE_peak   LR_open           NA
34              <NA>    NA not_TE_peak        NR           NA
35     Simple_repeat    42     TE_peak        NR 1.0000000000
36    Low_complexity    34     TE_peak        NR 1.0000000000
37    Low_complexity    42     TE_peak        NR 1.0000000000
38     Simple_repeat    45     TE_peak        NR 1.0000000000
39              <NA>    NA not_TE_peak        NR           NA
40     Simple_repeat    12     TE_peak  LR_close 0.1791044776
41         ERVL-MaLR   161     TE_peak  LR_close 1.0000000000
42               Alu    65     TE_peak        NR 0.2090032154
43               Alu    38     TE_peak        NR 0.2878787879
44    Low_complexity    41     TE_peak        NR 1.0000000000
45    Low_complexity    50     TE_peak        NR 1.0000000000
46     Simple_repeat     7     TE_peak  EAR_open 0.1666666667
47     Simple_repeat   103     TE_peak  EAR_open 1.0000000000
48     Simple_repeat    42     TE_peak  EAR_open 1.0000000000
49    Low_complexity    39     TE_peak  EAR_open 1.0000000000
50              <NA>    NA not_TE_peak        NR           NA
51     Simple_repeat    42     TE_peak        NR 1.0000000000
52     Simple_repeat    37     TE_peak        NR 1.0000000000
53     Simple_repeat    17     TE_peak        NR 0.0480225989
54    Low_complexity   100     TE_peak ESR_close 0.3676470588
55              <NA>    NA not_TE_peak  ESR_open           NA
56              <NA>    NA not_TE_peak  ESR_open           NA
57     Simple_repeat    39     TE_peak        NR 1.0000000000
58    Low_complexity     4     TE_peak ESR_close 0.1111111111
59     Simple_repeat    50     TE_peak ESR_close 1.0000000000
60     Simple_repeat    51     TE_peak        NR 1.0000000000
61              <NA>    NA not_TE_peak        NR           NA
62    Low_complexity    32     TE_peak   LR_open 1.0000000000
63     Simple_repeat    30     TE_peak ESR_close 1.0000000000
64              <NA>    NA not_TE_peak  ESR_open           NA
65     Simple_repeat    44     TE_peak  LR_close 1.0000000000
66    Low_complexity    43     TE_peak  LR_close 1.0000000000
67     Simple_repeat    42     TE_peak  LR_close 1.0000000000
68              <NA>    NA not_TE_peak  LR_close           NA
69              <NA>    NA not_TE_peak  ESR_open           NA
70     Simple_repeat     7     TE_peak  LR_close 0.0843373494
71     Simple_repeat    65     TE_peak  LR_close 1.0000000000
72              <NA>    NA not_TE_peak        NR           NA
73              <NA>    NA not_TE_peak        NR           NA
74              <NA>    NA not_TE_peak  ESR_open           NA
75     Simple_repeat    38     TE_peak  ESR_open 1.0000000000
76               MIR   177     TE_peak        NR 1.0000000000
77     Simple_repeat    34     TE_peak        NR 1.0000000000
78     Simple_repeat    39     TE_peak        NR 1.0000000000
79                L2   116     TE_peak        NR 1.0000000000
80              ERVL    53     TE_peak        NR 0.1464088398
81               Alu    83     TE_peak EAR_close 0.3108614232
82              ERVL   207     TE_peak EAR_close 1.0000000000
83     Simple_repeat    85     TE_peak EAR_close 1.0000000000
84               Alu    48     TE_peak EAR_close 0.1720430108
85     Simple_repeat    65     TE_peak        NR 1.0000000000
86     Simple_repeat    34     TE_peak        NR 1.0000000000
87    Low_complexity    39     TE_peak        NR 1.0000000000
88    Low_complexity    37     TE_peak        NR 1.0000000000
89               MIR   132     TE_peak        NR 1.0000000000
90              <NA>    NA not_TE_peak  ESR_open           NA
91              <NA>    NA not_TE_peak        NR           NA
92              <NA>    NA not_TE_peak        NR           NA
93              <NA>    NA not_TE_peak  ESR_open           NA
94              <NA>    NA not_TE_peak        NR           NA
95    Low_complexity    60     TE_peak EAR_close 1.0000000000
96     Simple_repeat    68     TE_peak  LR_close 1.0000000000
97     Simple_repeat    64     TE_peak  LR_close 1.0000000000
98     Simple_repeat    35     TE_peak  LR_close 1.0000000000
99     Simple_repeat    25     TE_peak  LR_close 1.0000000000
100    Simple_repeat    58     TE_peak  LR_close 1.0000000000
101              Alu    31     TE_peak EAR_close 0.1016393443
102               L1   196     TE_peak EAR_close 1.0000000000
103              Alu   187     TE_peak EAR_close 0.6538461538
104             <NA>    NA not_TE_peak        NR           NA
105             <NA>    NA not_TE_peak  ESR_open           NA
106    Simple_repeat    42     TE_peak        NR 1.0000000000
107    Simple_repeat    62     TE_peak        NR 1.0000000000
108    Simple_repeat    42     TE_peak        NR 1.0000000000
109   Low_complexity    47     TE_peak        NR 1.0000000000
110    Simple_repeat   361     TE_peak        NR 0.9328165375
111             <NA>    NA not_TE_peak ESR_close           NA
112      hAT-Charlie    77     TE_peak        NR 0.7264150943
113    Simple_repeat    61     TE_peak  LR_close 1.0000000000
114             ERV1    74     TE_peak   not_mrc 0.3718592965
115   Low_complexity   105     TE_peak        NR 1.0000000000
116    Simple_repeat    62     TE_peak        NR 1.0000000000
117   Low_complexity    46     TE_peak        NR 1.0000000000
118   Low_complexity    67     TE_peak        NR 1.0000000000
119              Alu    81     TE_peak        NR 1.0000000000
120              Alu   154     TE_peak        NR 1.0000000000
121              Alu    76     TE_peak        NR 0.2648083624
122             <NA>    NA not_TE_peak        NR           NA
123    Simple_repeat    45     TE_peak        NR 1.0000000000
124   Low_complexity    53     TE_peak        NR 1.0000000000
125             <NA>    NA not_TE_peak        NR           NA
126             <NA>    NA not_TE_peak        NR           NA
127    Simple_repeat    90     TE_peak        NR 1.0000000000
128   Low_complexity    34     TE_peak        NR 1.0000000000
129    Simple_repeat    37     TE_peak        NR 1.0000000000
130             <NA>    NA not_TE_peak  LR_close           NA
131             <NA>    NA not_TE_peak        NR           NA
132             ERV1   287     TE_peak  LR_close 0.7592592593
133             ERV1   139     TE_peak  LR_close 1.0000000000
134    Simple_repeat    47     TE_peak  LR_close 1.0000000000
135    Simple_repeat    24     TE_peak  LR_close 1.0000000000
136             <NA>    NA not_TE_peak  ESR_open           NA
137             <NA>    NA not_TE_peak  ESR_open           NA
138             <NA>    NA not_TE_peak  ESR_open           NA
139    Simple_repeat    25     TE_peak ESR_close 1.0000000000
140             ERVK   763     TE_peak ESR_close 0.7691532258
141    Simple_repeat    24     TE_peak  LR_close 1.0000000000
142    Simple_repeat   694     TE_peak   not_mrc 0.8401937046
143             <NA>    NA not_TE_peak        NR           NA
144             <NA>    NA not_TE_peak  EAR_open           NA
145               L2   144     TE_peak        NR 1.0000000000
146             <NA>    NA not_TE_peak  ESR_open           NA
147             <NA>    NA not_TE_peak  LR_close           NA
148    Simple_repeat    50     TE_peak  LR_close 1.0000000000
149    Simple_repeat    34     TE_peak  LR_close 1.0000000000
150    Simple_repeat    63     TE_peak  LR_close 1.0000000000
151    Simple_repeat    31     TE_peak  LR_close 0.5961538462
152             <NA>    NA not_TE_peak        NR           NA
153    Simple_repeat    45     TE_peak        NR 1.0000000000
154    Simple_repeat    77     TE_peak        NR 1.0000000000
155               L2    96     TE_peak        NR 0.6956521739
156    Simple_repeat    40     TE_peak ESR_close 1.0000000000
157    Simple_repeat    80     TE_peak        NR 1.0000000000
158             ERV1   268     TE_peak        NR 0.5775862069
159              Alu    66     TE_peak        NR 0.2129032258
160   Low_complexity    43     TE_peak        NR 1.0000000000
161    Simple_repeat    55     TE_peak        NR 1.0000000000
162   Low_complexity    24     TE_peak  LR_close 0.8275862069
163             <NA>    NA not_TE_peak  ESR_open           NA
164    Simple_repeat    20     TE_peak  LR_close 0.2941176471
165    Simple_repeat    50     TE_peak  LR_close 1.0000000000
166             <NA>    NA not_TE_peak        NR           NA
167    Simple_repeat    32     TE_peak        NR 1.0000000000
168    Simple_repeat    49     TE_peak        NR 1.0000000000
169             <NA>    NA not_TE_peak        NR           NA
170              Alu    63     TE_peak        NR 0.1974921630
171    Simple_repeat    47     TE_peak        NR 1.0000000000
172             <NA>    NA not_TE_peak        NR           NA
173    Simple_repeat    39     TE_peak        NR 0.8297872340
174    Simple_repeat    20     TE_peak        NR 1.0000000000
175             <NA>    NA not_TE_peak   not_mrc           NA
176              Alu     1     TE_peak   LR_open 0.0064102564
177   Low_complexity    45     TE_peak        NR 1.0000000000
178             <NA>    NA not_TE_peak        NR           NA
179               L1   101     TE_peak  ESR_open 0.8347107438
180               L1   428     TE_peak        NR 0.3770925110
181             <NA>    NA not_TE_peak        NR           NA
182             <NA>    NA not_TE_peak        NR           NA
183     TcMar-Tigger   665     TE_peak        NR 0.5371567044
184              Alu    94     TE_peak        NR 0.3230240550
185              Alu   171     TE_peak        NR 1.0000000000
186               L2   217     TE_peak        NR 0.8577075099
187      hAT-Charlie   344     TE_peak        NR 0.9828571429
188              Alu   301     TE_peak        NR 1.0000000000
189      hAT-Charlie    84     TE_peak        NR 1.0000000000
190              Alu    96     TE_peak        NR 1.0000000000
191      hAT-Charlie    70     TE_peak        NR 1.0000000000
192              Alu    61     TE_peak ESR_close 0.4295774648
193        ERVL-MaLR   288     TE_peak ESR_close 0.7422680412
194              Alu   120     TE_peak        NR 0.9917355372
195   Low_complexity    62     TE_peak        NR 1.0000000000
196    Simple_repeat    64     TE_peak        NR 1.0000000000
197              Alu   100     TE_peak        NR 1.0000000000
198              MIR   124     TE_peak        NR 1.0000000000
199             <NA>    NA not_TE_peak  EAR_open           NA
200    Simple_repeat    51     TE_peak        NR 1.0000000000
201    Simple_repeat    85     TE_peak        NR 1.0000000000
202    Simple_repeat    78     TE_peak        NR 1.0000000000
203   Low_complexity    35     TE_peak        NR 1.0000000000
204   Low_complexity    98     TE_peak        NR 1.0000000000
205              Alu   103     TE_peak    ESR_OC 0.7152777778
206              Alu   304     TE_peak    ESR_OC 1.0000000000
207              Alu    64     TE_peak    ESR_OC 0.2191780822
208              Alu    14     TE_peak ESR_close 0.0921052632
209              Alu    14     TE_peak ESR_close 1.0000000000
210               L1    90     TE_peak ESR_close 1.0000000000
211               L2    78     TE_peak ESR_close 1.0000000000
212   Low_complexity   136     TE_peak        NR 1.0000000000
213              Alu    61     TE_peak        NR 0.2046979866
214    Simple_repeat    52     TE_peak        NR 1.0000000000
215   Low_complexity     4     TE_peak        NR 0.0952380952
216             <NA>    NA not_TE_peak  EAR_open           NA
217        ERVL-MaLR   258     TE_peak        NR 0.6598465473
218    Simple_repeat    52     TE_peak        NR 1.0000000000
219               L1   135     TE_peak ESR_close 0.1737451737
220             <NA>    NA not_TE_peak        NR           NA
221             <NA>    NA not_TE_peak        NR           NA
222    Simple_repeat    35     TE_peak  EAR_open 1.0000000000
223             ERVL   200     TE_peak  EAR_open 0.8163265306
224             ERVL    86     TE_peak        NR 1.0000000000
225             ERVL   317     TE_peak        NR 1.0000000000
226   Low_complexity    91     TE_peak  LR_close 1.0000000000
227      hAT-Charlie    47     TE_peak  LR_close 0.5662650602
228   Low_complexity    47     TE_peak  LR_close 1.0000000000
229             <NA>    NA not_TE_peak  ESR_open           NA
230             <NA>    NA not_TE_peak   not_mrc           NA
231             <NA>    NA not_TE_peak        NR           NA
232      hAT-Charlie    62     TE_peak ESR_close 1.0000000000
233             <NA>    NA not_TE_peak        NR           NA
234               L2    36     TE_peak        NR 0.4444444444
235             <NA>    NA not_TE_peak        NR           NA
236             <NA>    NA not_TE_peak  LR_close           NA
237             <NA>    NA not_TE_peak ESR_close           NA
238        ERVL-MaLR    92     TE_peak  LR_close 0.4279069767
239             ERVL   424     TE_peak        NR 0.5714285714
240               L1    33     TE_peak        NR 0.1320000000
241              Alu    35     TE_peak  EAR_open 0.1268115942
242        ERVL-MaLR   188     TE_peak  EAR_open 1.0000000000
243        ERVL-MaLR   105     TE_peak  EAR_open 1.0000000000
244        ERVL-MaLR   168     TE_peak  ESR_open 1.0000000000
245             <NA>    NA not_TE_peak ESR_close           NA
246             <NA>    NA not_TE_peak ESR_close           NA
247               L1   192     TE_peak        NR 0.8458149780
248    Simple_repeat    40     TE_peak        NR 1.0000000000
249             <NA>    NA not_TE_peak        NR           NA
250    Simple_repeat    62     TE_peak  ESR_open 1.0000000000
251      hAT-Charlie    93     TE_peak EAR_close 1.0000000000
252             <NA>    NA not_TE_peak   LR_open           NA
253    Simple_repeat    62     TE_peak  LR_close 1.0000000000
254    Simple_repeat    30     TE_peak ESR_close 1.0000000000
255        ERVL-MaLR   100     TE_peak ESR_close 0.5847953216
256             <NA>    NA not_TE_peak        NR           NA
257             <NA>    NA not_TE_peak ESR_close           NA
258             <NA>    NA not_TE_peak        NR           NA
259    Simple_repeat    63     TE_peak ESR_close 1.0000000000
260             <NA>    NA not_TE_peak  LR_close           NA
261    Simple_repeat    69     TE_peak        NR 0.8214285714
262    Simple_repeat    30     TE_peak   LR_open 1.0000000000
263             <NA>    NA not_TE_peak ESR_close           NA
264             <NA>    NA not_TE_peak        NR           NA
265               L1   240     TE_peak        NR 0.7476635514
266             <NA>    NA not_TE_peak        NR           NA
267              Alu   174     TE_peak  ESR_open 0.5612903226
268             <NA>    NA not_TE_peak        NR           NA
269    Simple_repeat    42     TE_peak   LR_open 1.0000000000
270        ERVL-MaLR    33     TE_peak   LR_open 0.2200000000
271   Low_complexity    73     TE_peak ESR_close 1.0000000000
272              Alu   136     TE_peak ESR_close 1.0000000000
273             <NA>    NA not_TE_peak  ESR_open           NA
274             <NA>    NA not_TE_peak        NR           NA
275             <NA>    NA not_TE_peak        NR           NA
276    Simple_repeat    29     TE_peak  EAR_open 1.0000000000
277             <NA>    NA not_TE_peak  LR_close           NA
278    Simple_repeat    37     TE_peak  LR_close 1.0000000000
279             <NA>    NA not_TE_peak        NR           NA
280             <NA>    NA not_TE_peak ESR_close           NA
281             <NA>    NA not_TE_peak ESR_close           NA
282             <NA>    NA not_TE_peak   LR_open           NA
283               L1   231     TE_peak   LR_open 1.0000000000
284               L1    53     TE_peak   LR_open 1.0000000000
285             <NA>    NA not_TE_peak        NR           NA
286              MIR     2     TE_peak        NR 0.0151515152
287             <NA>    NA not_TE_peak  EAR_open           NA
288   Low_complexity    41     TE_peak        NR 1.0000000000
289    Simple_repeat    56     TE_peak  LR_close 1.0000000000
290   Low_complexity   186     TE_peak  LR_close 1.0000000000
291    Simple_repeat    30     TE_peak ESR_close 1.0000000000
292    Simple_repeat   127     TE_peak ESR_close 1.0000000000
293   Low_complexity    47     TE_peak ESR_close 1.0000000000
294    Simple_repeat   186     TE_peak   LR_open 0.9393939394
295             <NA>    NA not_TE_peak        NR           NA
296    Simple_repeat    16     TE_peak        NR 0.6400000000
297              MIR    43     TE_peak        NR 1.0000000000
298             <NA>    NA not_TE_peak  LR_close           NA
299             <NA>    NA not_TE_peak        NR           NA
300             <NA>    NA not_TE_peak        NR           NA
301   Low_complexity    30     TE_peak   LR_open 1.0000000000
302    Simple_repeat    33     TE_peak        NR 1.0000000000
303    Simple_repeat    25     TE_peak        NR 1.0000000000
304    Simple_repeat    23     TE_peak        NR 1.0000000000
305    Simple_repeat    19     TE_peak  LR_close 1.0000000000
306    Simple_repeat    29     TE_peak   not_mrc 1.0000000000
307    Simple_repeat    36     TE_peak        NR 1.0000000000
308             <NA>    NA not_TE_peak  LR_close           NA
309    Simple_repeat   427     TE_peak   not_mrc 0.9953379953
310             <NA>    NA not_TE_peak ESR_close           NA
311             <NA>    NA not_TE_peak        NR           NA
312             <NA>    NA not_TE_peak  LR_close           NA
313    Simple_repeat   241     TE_peak  EAR_open 0.3023839398
314             <NA>    NA not_TE_peak   LR_open           NA
315             <NA>    NA not_TE_peak        NR           NA
316              MIR   160     TE_peak        NR 1.0000000000
317    Simple_repeat    98     TE_peak  ESR_open 0.8235294118
318             <NA>    NA not_TE_peak        NR           NA
319             <NA>    NA not_TE_peak        NR           NA
320             <NA>    NA not_TE_peak        NR           NA
321             <NA>    NA not_TE_peak   LR_open           NA
322             <NA>    NA not_TE_peak EAR_close           NA
323             <NA>    NA not_TE_peak  LR_close           NA
324             <NA>    NA not_TE_peak        NR           NA
325             <NA>    NA not_TE_peak        NR           NA
326             <NA>    NA not_TE_peak        NR           NA
327             <NA>    NA not_TE_peak ESR_close           NA
328             <NA>    NA not_TE_peak   LR_open           NA
329    Simple_repeat    54     TE_peak        NR 1.0000000000
330    Simple_repeat    28     TE_peak   LR_open 1.0000000000
331             <NA>    NA not_TE_peak        NR           NA
332      hAT-Charlie   123     TE_peak ESR_close 1.0000000000
333             <NA>    NA not_TE_peak ESR_close           NA
334             <NA>    NA not_TE_peak ESR_close           NA
335             <NA>    NA not_TE_peak        NR           NA
336    Simple_repeat    42     TE_peak        NR 1.0000000000
337             <NA>    NA not_TE_peak  LR_close           NA
338             <NA>    NA not_TE_peak        NR           NA
339               L2    89     TE_peak EAR_close 1.0000000000
340             <NA>    NA not_TE_peak   LR_open           NA
341             <NA>    NA not_TE_peak  EAR_open           NA
342              MIR    62     TE_peak        NR 1.0000000000
343             <NA>    NA not_TE_peak        NR           NA
344             <NA>    NA not_TE_peak   LR_open           NA
345             <NA>    NA not_TE_peak        NR           NA
346             <NA>    NA not_TE_peak ESR_close           NA
347              Alu    37     TE_peak  LR_close 0.1258503401
348             <NA>    NA not_TE_peak        NR           NA
349              MIR   110     TE_peak        NR 1.0000000000
350              MIR   102     TE_peak        NR 1.0000000000
351             <NA>    NA not_TE_peak  LR_close           NA
352   Low_complexity    33     TE_peak        NR 1.0000000000
353   Low_complexity    20     TE_peak   LR_open 0.1980198020
354             <NA>    NA not_TE_peak  LR_close           NA
355    Simple_repeat    42     TE_peak        NR 1.0000000000
356    Simple_repeat    38     TE_peak        NR 1.0000000000
357   Low_complexity    40     TE_peak        NR 1.0000000000
358             <NA>    NA not_TE_peak  ESR_open           NA
359             <NA>    NA not_TE_peak  ESR_open           NA
360   Low_complexity    39     TE_peak        NR 1.0000000000
361    Simple_repeat    41     TE_peak ESR_close 1.0000000000
362    Simple_repeat    31     TE_peak ESR_close 1.0000000000
363    Simple_repeat    38     TE_peak ESR_close 1.0000000000
364    Simple_repeat    86     TE_peak ESR_close 0.9885057471
365             <NA>    NA not_TE_peak ESR_close           NA
366             <NA>    NA not_TE_peak ESR_close           NA
367             <NA>    NA not_TE_peak        NR           NA
368             <NA>    NA not_TE_peak        NR           NA
369             <NA>    NA not_TE_peak        NR           NA
370    Simple_repeat    26     TE_peak  ESR_open 1.0000000000
371             ERVL   688     TE_peak  ESR_open 1.0000000000
372             <NA>    NA not_TE_peak        NR           NA
373    Simple_repeat    78     TE_peak        NR 1.0000000000
374    Simple_repeat    49     TE_peak        NR 1.0000000000
375    Simple_repeat   132     TE_peak        NR 1.0000000000
376    Simple_repeat    39     TE_peak        NR 1.0000000000
377               L2    48     TE_peak        NR 1.0000000000
378       hAT-Tip100   167     TE_peak        NR 1.0000000000
379             <NA>    NA not_TE_peak        NR           NA
380             <NA>    NA not_TE_peak        NR           NA
381             <NA>    NA not_TE_peak        NR           NA
382             <NA>    NA not_TE_peak        NR           NA
383             <NA>    NA not_TE_peak   LR_open           NA
384             <NA>    NA not_TE_peak ESR_close           NA
385             <NA>    NA not_TE_peak   LR_open           NA
386             <NA>    NA not_TE_peak   LR_open           NA
387              MIR    22     TE_peak ESR_close 0.0936170213
388    Simple_repeat    40     TE_peak        NR 1.0000000000
389             <NA>    NA not_TE_peak        NR           NA
390             <NA>    NA not_TE_peak  LR_close           NA
391             <NA>    NA not_TE_peak        NR           NA
392               L2   228     TE_peak        NR 1.0000000000
393             <NA>    NA not_TE_peak   LR_open           NA
394             <NA>    NA not_TE_peak ESR_close           NA
395             <NA>    NA not_TE_peak   not_mrc           NA
396              Alu    90     TE_peak  EAR_open 0.3020134228
397             <NA>    NA not_TE_peak        NR           NA
398    Simple_repeat    54     TE_peak        NR 1.0000000000
399             <NA>    NA not_TE_peak ESR_close           NA
400    Simple_repeat    40     TE_peak ESR_close 1.0000000000
401              MIR   164     TE_peak ESR_close 1.0000000000
402             <NA>    NA not_TE_peak ESR_close           NA
403             <NA>    NA not_TE_peak        NR           NA
404    Simple_repeat    22     TE_peak        NR 1.0000000000
405             ERV1   229     TE_peak        NR 0.3154269972
406             ERVK   173     TE_peak        NR 0.3626834382
407             ERVK   372     TE_peak        NR 0.2634560907
408              MIR    28     TE_peak        NR 1.0000000000
409              MIR    42     TE_peak        NR 1.0000000000
410               L2   119     TE_peak        NR 1.0000000000
411    Simple_repeat    80     TE_peak        NR 1.0000000000
412      hAT-Charlie    46     TE_peak   not_mrc 1.0000000000
413        ERVL-MaLR   105     TE_peak   not_mrc 1.0000000000
414    Simple_repeat    18     TE_peak  LR_close 1.0000000000
415              MIR   119     TE_peak        NR 0.5891089109
416    Simple_repeat    45     TE_peak        NR 1.0000000000
417    Simple_repeat    14     TE_peak        NR 1.0000000000
418               L1   274     TE_peak        NR 0.5036764706
419             ERVL   335     TE_peak        NR 0.4731638418
420               L2   455     TE_peak        NR 0.5083798883
421             <NA>    NA not_TE_peak        NR           NA
422             <NA>    NA not_TE_peak        NR           NA
423              MIR   166     TE_peak        NR 0.9325842697
424   Low_complexity    65     TE_peak        NR 1.0000000000
425             <NA>    NA not_TE_peak        NR           NA
426              LTR   104     TE_peak        NR 1.0000000000
427             <NA>    NA not_TE_peak        NR           NA
428     TcMar-Tigger   188     TE_peak        NR 1.0000000000
429             <NA>    NA not_TE_peak EAR_close           NA
430             ERV1   468     TE_peak        NR 0.9052224371
431    Simple_repeat    78     TE_peak        NR 1.0000000000
432               L2   271     TE_peak        NR 0.9783393502
433               L1     9     TE_peak        NR 0.0159010601
434             <NA>    NA not_TE_peak  LR_close           NA
435              Alu    70     TE_peak        NR 0.2536231884
436    Simple_repeat   192     TE_peak   LR_open 1.0000000000
437             ERV1    82     TE_peak        NR 0.2129870130
438              MIR    91     TE_peak        NR 1.0000000000
439        ERVL-MaLR    97     TE_peak EAR_close 0.3099041534
440            RTE-X   207     TE_peak        NR 0.9039301310
441             <NA>    NA not_TE_peak        NR           NA
442        ERVL-MaLR   308     TE_peak        NR 0.7530562347
443             <NA>    NA not_TE_peak        NR           NA
444             <NA>    NA not_TE_peak        NR           NA
445               L2   116     TE_peak  LR_close 1.0000000000
446             <NA>    NA not_TE_peak        NR           NA
447    Simple_repeat    30     TE_peak        NR 1.0000000000
448               L2   185     TE_peak        NR 0.7341269841
449               L2   127     TE_peak        NR 1.0000000000
450              MIR    99     TE_peak        NR 0.5689655172
451              MIR    14     TE_peak        NR 0.1129032258
452        ERVL-MaLR    58     TE_peak        NR 0.1576086957
453             <NA>    NA not_TE_peak        NR           NA
454             <NA>    NA not_TE_peak        NR           NA
455             <NA>    NA not_TE_peak        NR           NA
456               L2   110     TE_peak   LR_open 1.0000000000
457             ERVL   406     TE_peak        NR 0.7602996255
458              MIR   152     TE_peak        NR 1.0000000000
459             <NA>    NA not_TE_peak  LR_close           NA
460    Simple_repeat    16     TE_peak  LR_close 0.3555555556
461             <NA>    NA not_TE_peak        NR           NA
462    Simple_repeat    92     TE_peak        NR 0.5786163522
463             <NA>    NA not_TE_peak ESR_close           NA
464             <NA>    NA not_TE_peak        NR           NA
465              MIR    39     TE_peak        NR 0.1772727273
466        ERVL-MaLR    55     TE_peak        NR 0.3985507246
467             <NA>    NA not_TE_peak EAR_close           NA
468             <NA>    NA not_TE_peak        NR           NA
469             <NA>    NA not_TE_peak ESR_close           NA
470               L2   165     TE_peak        NR 0.6903765690
471               L1   180     TE_peak ESR_close 0.2531645570
472             ERVL   291     TE_peak        NR 0.6126315789
473             <NA>    NA not_TE_peak        NR           NA
474              MIR    66     TE_peak        NR 1.0000000000
475             <NA>    NA not_TE_peak        NR           NA
476    Simple_repeat    12     TE_peak        NR 0.0140186916
477               L2   210     TE_peak        NR 0.6122448980
478             <NA>    NA not_TE_peak   LR_open           NA
479             <NA>    NA not_TE_peak        NR           NA
480               L2    48     TE_peak ESR_close 0.0412371134
481    Simple_repeat    40     TE_peak        NR 1.0000000000
482              Alu    60     TE_peak        NR 0.1980198020
483              hAT   152     TE_peak        NR 1.0000000000
484               L2   124     TE_peak        NR 0.3076923077
485             <NA>    NA not_TE_peak   LR_open           NA
486             <NA>    NA not_TE_peak ESR_close           NA
487             <NA>    NA not_TE_peak   not_mrc           NA
488              Alu   141     TE_peak  ESR_open 0.5108695652
489              MIR   221     TE_peak EAR_close 1.0000000000
490    Simple_repeat    51     TE_peak EAR_close 0.6219512195
491      hAT-Charlie    85     TE_peak        NR 1.0000000000
492              MIR   108     TE_peak   not_mrc 0.9818181818
493             <NA>    NA not_TE_peak ESR_close           NA
494   Low_complexity    18     TE_peak        NR 0.3103448276
495             <NA>    NA not_TE_peak        NR           NA
496   Low_complexity    59     TE_peak        NR 1.0000000000
497               L2    56     TE_peak        NR 0.6588235294
498              MIR    83     TE_peak  LR_close 1.0000000000
499              Alu   274     TE_peak  LR_close 1.0000000000
500              MIR    15     TE_peak  LR_close 0.1485148515
501              MIR   123     TE_peak  LR_close 1.0000000000
502             <NA>    NA not_TE_peak        NR           NA
503               L2    15     TE_peak        NR 0.2727272727
504             <NA>    NA not_TE_peak        NR           NA
505             <NA>    NA not_TE_peak        NR           NA
506             <NA>    NA not_TE_peak  ESR_open           NA
507    Simple_repeat     8     TE_peak        NR 0.1666666667
508    Simple_repeat    25     TE_peak        NR 1.0000000000
509             <NA>    NA not_TE_peak        NR           NA
510             <NA>    NA not_TE_peak        NR           NA
511             <NA>    NA not_TE_peak        NR           NA
512              MIR    40     TE_peak  ESR_open 0.3418803419
513    Simple_repeat    18     TE_peak        NR 0.3600000000
514    Simple_repeat    97     TE_peak        NR 0.9700000000
515    Simple_repeat   143     TE_peak        NR 1.0000000000
516               L2    54     TE_peak        NR 1.0000000000
517    Simple_repeat    60     TE_peak        NR 1.0000000000
518             <NA>    NA not_TE_peak   LR_open           NA
519             <NA>    NA not_TE_peak        NR           NA
520             <NA>    NA not_TE_peak        NR           NA
521        ERVL-MaLR    33     TE_peak        NR 0.1447368421
522        ERVL-MaLR   165     TE_peak        NR 1.0000000000
523              Alu    24     TE_peak        NR 0.0776699029
524             <NA>    NA not_TE_peak        NR           NA
525              MIR   106     TE_peak  ESR_open 1.0000000000
526    Simple_repeat    11     TE_peak  ESR_open 0.2200000000
527      hAT-Charlie   106     TE_peak        NR 1.0000000000
528    Simple_repeat    33     TE_peak  LR_close 0.6346153846
529    Simple_repeat    38     TE_peak        NR 1.0000000000
530               L2   191     TE_peak ESR_close 0.6797153025
531    Simple_repeat    57     TE_peak        NR 1.0000000000
532             ERVK   269     TE_peak        NR 0.2742099898
533             ERV1   409     TE_peak   LR_open 0.3917624521
534               L1   134     TE_peak        NR 0.5403225806
535   Low_complexity    70     TE_peak        NR 1.0000000000
536    Simple_repeat    34     TE_peak        NR 1.0000000000
537    Simple_repeat    53     TE_peak        NR 1.0000000000
538    Simple_repeat     8     TE_peak        NR 1.0000000000
539              Alu    40     TE_peak        NR 0.1418439716
540    Simple_repeat    51     TE_peak        NR 1.0000000000
541              Alu    89     TE_peak  ESR_open 0.3189964158
542    Simple_repeat    61     TE_peak  ESR_open 1.0000000000
543              Alu   118     TE_peak  ESR_open 0.4097222222
544   Low_complexity    18     TE_peak        NR 0.2686567164
545              MIR   105     TE_peak   LR_open 1.0000000000
546             <NA>    NA not_TE_peak        NR           NA
547    Simple_repeat    40     TE_peak   not_mrc 1.0000000000
548             <NA>    NA not_TE_peak        NR           NA
549              MIR   142     TE_peak        NR 1.0000000000
550              MIR    31     TE_peak        NR 0.4305555556
551   Low_complexity   120     TE_peak        NR 1.0000000000
552    Simple_repeat    40     TE_peak        NR 1.0000000000
553    Simple_repeat    85     TE_peak        NR 1.0000000000
554    Simple_repeat    78     TE_peak   LR_open 1.0000000000
555              MIR    65     TE_peak   LR_open 1.0000000000
556             <NA>    NA not_TE_peak  ESR_open           NA
557             <NA>    NA not_TE_peak        NR           NA
558    Simple_repeat    19     TE_peak        NR 1.0000000000
559              MIR    70     TE_peak        NR 1.0000000000
560             <NA>    NA not_TE_peak  LR_close           NA
561              CR1   121     TE_peak        NR 0.4726562500
562               L1    56     TE_peak  LR_close 0.2267206478
563              MIR   215     TE_peak   not_mrc 1.0000000000
564             <NA>    NA not_TE_peak   not_mrc           NA
565              Alu   112     TE_peak        NR 0.8484848485
566               L1   192     TE_peak        NR 1.0000000000
567              Alu   124     TE_peak        NR 1.0000000000
568               L1    77     TE_peak        NR 0.7475728155
569             <NA>    NA not_TE_peak        NR           NA
570           hAT-Ac    91     TE_peak        NR 1.0000000000
571              Alu   107     TE_peak        NR 0.8699186992
572              Alu    75     TE_peak        NR 0.2459016393
573             <NA>    NA not_TE_peak   LR_open           NA
574              Alu   228     TE_peak        NR 0.7378640777
575   Low_complexity    80     TE_peak        NR 1.0000000000
576             <NA>    NA not_TE_peak        NR           NA
577    Simple_repeat    52     TE_peak        NR 1.0000000000
578    Simple_repeat    56     TE_peak        NR 1.0000000000
579    Simple_repeat   100     TE_peak        NR 1.0000000000
580    Simple_repeat    52     TE_peak  LR_close 1.0000000000
581               L2   111     TE_peak  LR_close 1.0000000000
582               L1   113     TE_peak  LR_close 1.0000000000
583              Alu    31     TE_peak  LR_close 0.1043771044
584             <NA>    NA not_TE_peak  LR_close           NA
585      hAT-Charlie   104     TE_peak        NR 1.0000000000
586              Alu    63     TE_peak        NR 0.3351063830
587              Alu   242     TE_peak  LR_close 0.7400611621
588    hAT-Blackjack   103     TE_peak  LR_close 1.0000000000
589        ERVL-MaLR    78     TE_peak  LR_close 1.0000000000
590        ERVL-MaLR    37     TE_peak  LR_close 0.0840909091
591             <NA>    NA not_TE_peak  LR_close           NA
592              Alu   188     TE_peak  LR_close 0.6886446886
593             <NA>    NA not_TE_peak  LR_close           NA
594      hAT-Charlie    50     TE_peak        NR 0.9433962264
595        ERVL-MaLR   362     TE_peak        NR 1.0000000000
596              CR1   146     TE_peak  LR_close 0.7053140097
597              Alu    70     TE_peak        NR 0.2348993289
598             <NA>    NA not_TE_peak        NR           NA
599             <NA>    NA not_TE_peak        NR           NA
600        ERVL-MaLR     9     TE_peak        NR 0.0233766234
601    Simple_repeat    24     TE_peak        NR 1.0000000000
602              DNA   102     TE_peak        NR 1.0000000000
603      hAT-Charlie   231     TE_peak        NR 1.0000000000
604             <NA>    NA not_TE_peak        NR           NA
605           hAT-Ac    35     TE_peak   LR_open 0.3211009174
606    Simple_repeat    45     TE_peak        NR 1.0000000000
607             <NA>    NA not_TE_peak  EAR_open           NA
608             <NA>    NA not_TE_peak   LR_open           NA
609              Alu   304     TE_peak   LR_open 1.0000000000
610             <NA>    NA not_TE_peak        NR           NA
611             <NA>    NA not_TE_peak  ESR_open           NA
612     TcMar-Tigger   210     TE_peak   LR_open 1.0000000000
613              Alu   174     TE_peak   LR_open 0.8877551020
614              Alu    46     TE_peak        NR 0.1735849057
615               L2   119     TE_peak        NR 1.0000000000
616              Alu   245     TE_peak        NR 0.8085808581
617               L1   295     TE_peak   LR_open 1.0000000000
618              Alu   168     TE_peak   LR_open 0.5384615385
619              Alu   293     TE_peak        NR 0.9331210191
620             <NA>    NA not_TE_peak        NR           NA
621              MIR   159     TE_peak  LR_close 1.0000000000
622              Alu   273     TE_peak  LR_close 0.9285714286
623             <NA>    NA not_TE_peak        NR           NA
624             <NA>    NA not_TE_peak        NR           NA
625              MIR   118     TE_peak   LR_open 0.5592417062
626              Alu   140     TE_peak        NR 0.7253886010
627    Simple_repeat    32     TE_peak        NR 1.0000000000
628              Alu   127     TE_peak        NR 1.0000000000
629             <NA>    NA not_TE_peak ESR_close           NA
630              MIR   144     TE_peak        NR 1.0000000000
631              MIR   145     TE_peak   LR_open 1.0000000000
632              MIR   227     TE_peak   LR_open 1.0000000000
633              MIR   108     TE_peak ESR_close 0.5684210526
634        ERVL-MaLR    97     TE_peak ESR_close 1.0000000000
635    Simple_repeat    46     TE_peak  LR_close 1.0000000000
636    Simple_repeat    32     TE_peak  LR_close 1.0000000000
637             <NA>    NA not_TE_peak   LR_open           NA
638               L1   358     TE_peak   LR_open 0.4924346630
639              Alu    78     TE_peak   LR_open 0.2671232877
640              Alu   135     TE_peak ESR_close 0.5487804878
641               L2   188     TE_peak ESR_close 1.0000000000
642             <NA>    NA not_TE_peak        NR           NA
643               L2    97     TE_peak        NR 1.0000000000
644              MIR   131     TE_peak        NR 1.0000000000
645      hAT-Charlie    15     TE_peak        NR 0.0728155340
646              Alu    65     TE_peak        NR 0.2166666667
647             <NA>    NA not_TE_peak        NR           NA
648    hAT-Blackjack   109     TE_peak EAR_close 1.0000000000
649               L2   189     TE_peak  LR_close 1.0000000000
650             ERVL   285     TE_peak  LR_close 0.4922279793
651    Simple_repeat   457     TE_peak        NR 0.4696813977
652             <NA>    NA not_TE_peak ESR_close           NA
653               L1   254     TE_peak        NR 0.3889739663
654              Alu    52     TE_peak        NR 0.1768707483
655             <NA>    NA not_TE_peak        NR           NA
656             <NA>    NA not_TE_peak        NR           NA
657      hAT-Charlie    14     TE_peak   LR_open 0.0823529412
658             <NA>    NA not_TE_peak        NR           NA
659             <NA>    NA not_TE_peak   LR_open           NA
660              MIR    40     TE_peak        NR 0.4347826087
661             <NA>    NA not_TE_peak        NR           NA
662             <NA>    NA not_TE_peak        NR           NA
663              MIR    41     TE_peak ESR_close 0.3474576271
664             <NA>    NA not_TE_peak        NR           NA
665              MIR     4     TE_peak  LR_close 0.0218579235
666             <NA>    NA not_TE_peak        NR           NA
667             ERVL   167     TE_peak ESR_close 0.2992831541
668             <NA>    NA not_TE_peak        NR           NA
669             <NA>    NA not_TE_peak ESR_close           NA
670               L1     6     TE_peak   LR_open 0.0062959077
671              MIR   105     TE_peak   LR_open 1.0000000000
672              MIR   187     TE_peak   LR_open 0.9077669903
673              MIR   102     TE_peak ESR_close 0.5049504950
674   Low_complexity   157     TE_peak        NR 0.8820224719
675             <NA>    NA not_TE_peak        NR           NA
676    Simple_repeat    69     TE_peak        NR 1.0000000000
677              MIR   154     TE_peak        NR 1.0000000000
678             <NA>    NA not_TE_peak   LR_open           NA
679             <NA>    NA not_TE_peak   LR_open           NA
680             <NA>    NA not_TE_peak ESR_close           NA
681             <NA>    NA not_TE_peak   LR_open           NA
682             <NA>    NA not_TE_peak ESR_close           NA
683              CR1    66     TE_peak ESR_close 1.0000000000
684             <NA>    NA not_TE_peak ESR_close           NA
685             <NA>    NA not_TE_peak   LR_open           NA
686               L1   115     TE_peak ESR_close 1.0000000000
687    hAT-Blackjack   129     TE_peak   LR_open 0.6386138614
688              Alu    22     TE_peak   LR_open 0.0766550523
689       hAT-Tip100    10     TE_peak   LR_open 0.1176470588
690               L2   189     TE_peak   LR_open 0.5869565217
691               L2   225     TE_peak   LR_open 1.0000000000
692               L2    68     TE_peak   LR_open 1.0000000000
693   Low_complexity    37     TE_peak ESR_close 1.0000000000
694             <NA>    NA not_TE_peak  LR_close           NA
695             <NA>    NA not_TE_peak        NR           NA
696             <NA>    NA not_TE_peak EAR_close           NA
697              MIR    96     TE_peak ESR_close 1.0000000000
698             <NA>    NA not_TE_peak        NR           NA
699             <NA>    NA not_TE_peak        NR           NA
700             <NA>    NA not_TE_peak   not_mrc           NA
701             <NA>    NA not_TE_peak        NR           NA
702             <NA>    NA not_TE_peak        NR           NA
703             <NA>    NA not_TE_peak ESR_close           NA
704             <NA>    NA not_TE_peak ESR_close           NA
705              Alu    35     TE_peak        NR 0.1140065147
706              MIR    17     TE_peak        NR 0.3148148148
707             <NA>    NA not_TE_peak        NR           NA
708              MIR   173     TE_peak  LR_close 1.0000000000
709    Simple_repeat    39     TE_peak        NR 1.0000000000
710    Simple_repeat    19     TE_peak        NR 1.0000000000
711    Simple_repeat     4     TE_peak        NR 0.1290322581
712             <NA>    NA not_TE_peak        NR           NA
713               L2    62     TE_peak  EAR_open 1.0000000000
714             <NA>    NA not_TE_peak        NR           NA
715             <NA>    NA not_TE_peak  LR_close           NA
716               L2    98     TE_peak        NR 1.0000000000
717             <NA>    NA not_TE_peak        NR           NA
718    Simple_repeat    28     TE_peak        NR 1.0000000000
719              MIR   185     TE_peak        NR 1.0000000000
720             <NA>    NA not_TE_peak ESR_close           NA
721    Simple_repeat    58     TE_peak ESR_close 1.0000000000
722             <NA>    NA not_TE_peak   LR_open           NA
723              MIR   183     TE_peak        NR 0.7991266376
724              Alu   150     TE_peak        NR 0.4966887417
725              Alu    42     TE_peak        NR 0.3471074380
726              Alu   126     TE_peak        NR 0.4375000000
727             <NA>    NA not_TE_peak        NR           NA
728             <NA>    NA not_TE_peak        NR           NA
729              Alu    43     TE_peak        NR 0.3093525180
730               L2    53     TE_peak        NR 0.6625000000
731    Simple_repeat    24     TE_peak        NR 1.0000000000
732             <NA>    NA not_TE_peak ESR_close           NA
733              Alu    95     TE_peak        NR 0.2968750000
734    Simple_repeat   573     TE_peak   LR_open 0.9378068740
735             <NA>    NA not_TE_peak        NR           NA
736             <NA>    NA not_TE_peak        NR           NA
737             <NA>    NA not_TE_peak   LR_open           NA
738             <NA>    NA not_TE_peak        NR           NA
739    Simple_repeat    51     TE_peak        NR 1.0000000000
740    Simple_repeat    29     TE_peak        NR 1.0000000000
741             <NA>    NA not_TE_peak        NR           NA
742             ERVL   363     TE_peak        NR 0.8897058824
743               L1    21     TE_peak        NR 0.1055276382
744              Alu   151     TE_peak   LR_open 0.4967105263
745    Simple_repeat    14     TE_peak   LR_open 1.0000000000
746               L2    97     TE_peak   LR_open 0.4409090909
747              MIR    68     TE_peak        NR 0.3253588517
748      hAT-Charlie    56     TE_peak   LR_open 0.2196078431
749   Low_complexity    47     TE_peak   LR_open 1.0000000000
750              Alu   105     TE_peak   LR_open 0.3476821192
751              Alu    46     TE_peak  ESR_open 0.1533333333
752             ERV1   188     TE_peak  ESR_open 0.4619164619
753              Alu    55     TE_peak        NR 0.5851063830
754               L2    60     TE_peak  ESR_open 1.0000000000
755    Simple_repeat    45     TE_peak  LR_close 1.0000000000
756             <NA>    NA not_TE_peak  ESR_open           NA
757             <NA>    NA not_TE_peak   LR_open           NA
758               L1    14     TE_peak        NR 0.0454545455
759            Gypsy   153     TE_peak   not_mrc 1.0000000000
760              Alu    87     TE_peak   LR_open 0.2852459016
761              Alu   159     TE_peak        NR 0.5112540193
762           hAT-Ac    53     TE_peak   LR_open 1.0000000000
763              Alu   110     TE_peak        NR 0.3654485050
764              Alu    30     TE_peak        NR 0.0983606557
765            RTE-X   277     TE_peak   LR_open 0.6873449132
766             ERVL   106     TE_peak        NR 0.5638297872
767               L1   255     TE_peak        NR 0.5039525692
768             <NA>    NA not_TE_peak   LR_open           NA
769            RTE-X    83     TE_peak   LR_open 1.0000000000
770   Low_complexity    45     TE_peak   LR_open 1.0000000000
771              Alu    89     TE_peak   LR_open 0.5204678363
772    Simple_repeat    39     TE_peak   LR_open 1.0000000000
773              Alu   202     TE_peak   LR_open 0.6894197952
774              Alu    47     TE_peak        NR 0.1566666667
775               L1   129     TE_peak        NR 0.7329545455
776               L1    45     TE_peak        NR 0.4368932039
777             <NA>    NA not_TE_peak   LR_open           NA
778              Alu   113     TE_peak   LR_open 0.4021352313
779               L1   107     TE_peak   LR_open 1.0000000000
780              MIR   209     TE_peak   LR_open 0.8781512605
781             <NA>    NA not_TE_peak EAR_close           NA
782              CR1   118     TE_peak        NR 1.0000000000
783         RTE-BovB    66     TE_peak        NR 1.0000000000
784             <NA>    NA not_TE_peak   LR_open           NA
785        ERVL-MaLR     3     TE_peak    ESR_OC 0.0344827586
786   Low_complexity    55     TE_peak    ESR_OC 1.0000000000
787             <NA>    NA not_TE_peak        NR           NA
788              Alu   101     TE_peak ESR_close 1.0000000000
789              Alu   201     TE_peak ESR_close 0.7102473498
790             <NA>    NA not_TE_peak        NR           NA
791              Alu   266     TE_peak  LR_close 0.8866666667
792             ERVL    30     TE_peak  EAR_open 0.1083032491
793             ERVL   414     TE_peak  EAR_open 0.9019607843
794               L1    75     TE_peak        NR 0.5172413793
795             ERV1   102     TE_peak        NR 1.0000000000
796              Alu    10     TE_peak        NR 0.0362318841
797              MIR    55     TE_peak        NR 0.6395348837
798    Simple_repeat    33     TE_peak        NR 1.0000000000
799              CR1    46     TE_peak        NR 1.0000000000
800             <NA>    NA not_TE_peak   LR_open           NA
801             <NA>    NA not_TE_peak        NR           NA
802             <NA>    NA not_TE_peak        NR           NA
803             <NA>    NA not_TE_peak  LR_close           NA
804             <NA>    NA not_TE_peak        NR           NA
805    Simple_repeat    30     TE_peak  ESR_open 1.0000000000
806    Simple_repeat    89     TE_peak  ESR_open 1.0000000000
807             <NA>    NA not_TE_peak        NR           NA
808             <NA>    NA not_TE_peak        NR           NA
809             <NA>    NA not_TE_peak        NR           NA
810             <NA>    NA not_TE_peak  LR_close           NA
811               L1   155     TE_peak        NR 1.0000000000
812              MIR   235     TE_peak        NR 1.0000000000
813              MIR    24     TE_peak        NR 0.1632653061
814              Alu    23     TE_peak        NR 0.0746753247
815        ERVL-MaLR   366     TE_peak        NR 1.0000000000
816               L1    91     TE_peak        NR 0.2645348837
817             <NA>    NA not_TE_peak EAR_close           NA
818             <NA>    NA not_TE_peak        NR           NA
819             <NA>    NA not_TE_peak   LR_open           NA
820             <NA>    NA not_TE_peak   LR_open           NA
821    Simple_repeat    36     TE_peak        NR 1.0000000000
822               L2    53     TE_peak        NR 1.0000000000
823             <NA>    NA not_TE_peak        NR           NA
824      hAT-Charlie    66     TE_peak        NR 1.0000000000
825              Alu   205     TE_peak        NR 0.7020547945
826        ERVL-MaLR   344     TE_peak        NR 0.3197026022
827             <NA>    NA not_TE_peak        NR           NA
828              Alu   156     TE_peak  EAR_open 0.3804878049
829               L2    88     TE_peak        NR 1.0000000000
830               L2   102     TE_peak        NR 0.2512315271
831   Low_complexity   154     TE_peak        NR 1.0000000000
832               L2   299     TE_peak        NR 0.5516605166
833              CR1   267     TE_peak   LR_open 0.8165137615
834               L1   111     TE_peak   LR_open 0.7207792208
835             <NA>    NA not_TE_peak        NR           NA
836              Alu   148     TE_peak        NR 0.4916943522
837              Alu   136     TE_peak        NR 0.7351351351
838              Alu   209     TE_peak   LR_open 0.7545126354
839              Alu   149     TE_peak   LR_open 0.6286919831
840        TcMar-Tc2   138     TE_peak        NR 0.8789808917
841              Alu   175     TE_peak        NR 1.0000000000
842              Alu   137     TE_peak        NR 0.4675767918
843             <NA>    NA not_TE_peak        NR           NA
844             <NA>    NA not_TE_peak EAR_close           NA
845    Simple_repeat    24     TE_peak        NR 1.0000000000
846    Simple_repeat    29     TE_peak        NR 1.0000000000
847              Alu    15     TE_peak        NR 0.1282051282
848             <NA>    NA not_TE_peak  ESR_open           NA
849             <NA>    NA not_TE_peak        NR           NA
850             <NA>    NA not_TE_peak   LR_open           NA
851      hAT-Charlie   155     TE_peak        NR 0.4572271386
852             <NA>    NA not_TE_peak   LR_open           NA
853               L1    74     TE_peak  LR_close 1.0000000000
854              Alu   230     TE_peak  LR_close 0.8550185874
855             <NA>    NA not_TE_peak   LR_open           NA
856             <NA>    NA not_TE_peak        NR           NA
857               L2    95     TE_peak  LR_close 0.8715596330
858             ERV1   465     TE_peak        NR 1.0000000000
859             <NA>    NA not_TE_peak ESR_close           NA
860              Alu   144     TE_peak        NR 0.8780487805
861        ERVL-MaLR   369     TE_peak        NR 1.0000000000
862              Alu    61     TE_peak        NR 0.6288659794
863     TcMar-Tigger    84     TE_peak        NR 0.3373493976
864              MIR   172     TE_peak        NR 1.0000000000
865               L2   450     TE_peak        NR 0.4550050556
866             <NA>    NA not_TE_peak        NR           NA
867               L2   821     TE_peak        NR 1.0000000000
868      hAT-Charlie    81     TE_peak        NR 0.0996309963
869              Alu    59     TE_peak   LR_open 0.1643454039
870      hAT-Charlie   199     TE_peak   LR_open 1.0000000000
871    Simple_repeat    44     TE_peak  EAR_open 1.0000000000
872    Simple_repeat    55     TE_peak  LR_close 1.0000000000
873             <NA>    NA not_TE_peak        NR           NA
874             <NA>    NA not_TE_peak        NR           NA
875              Alu   182     TE_peak        NR 0.5741324921
876              Alu   199     TE_peak        NR 0.6655518395
877     TcMar-Tigger   220     TE_peak   LR_open 0.2101241643
878             <NA>    NA not_TE_peak        NR           NA
879    Simple_repeat    28     TE_peak        NR 1.0000000000
880    Simple_repeat    53     TE_peak        NR 1.0000000000
881        5S-Deu-L2   397     TE_peak   LR_open 1.0000000000
882        ERVL-MaLR   369     TE_peak        NR 0.8218262806
883     TcMar-Tigger    58     TE_peak        NR 0.4296296296
884              Alu    69     TE_peak        NR 0.2225806452
885    Simple_repeat    40     TE_peak        NR 1.0000000000
886    Simple_repeat    29     TE_peak        NR 1.0000000000
887              Alu   105     TE_peak    ESR_OC 0.3633217993
888             ERVL    14     TE_peak    ESR_OC 0.1000000000
889             <NA>    NA not_TE_peak        NR           NA
890             <NA>    NA not_TE_peak    ESR_OC           NA
891      hAT-Charlie    38     TE_peak  ESR_open 1.0000000000
892   Low_complexity    34     TE_peak        NR 1.0000000000
893              Alu   318     TE_peak        NR 1.0000000000
894    Simple_repeat    53     TE_peak        NR 1.0000000000
895    Simple_repeat    55     TE_peak        NR 1.0000000000
896              Alu    41     TE_peak ESR_close 1.0000000000
897    Simple_repeat    19     TE_peak ESR_close 1.0000000000
898             ERV1   204     TE_peak ESR_close 1.0000000000
899              Alu   305     TE_peak ESR_close 1.0000000000
900              Alu    57     TE_peak ESR_close 0.3048128342
901              Alu   169     TE_peak   LR_open 0.5577557756
902             ERV1    54     TE_peak   LR_open 1.0000000000
903             ERV1    82     TE_peak   LR_open 1.0000000000
904              Alu   210     TE_peak   LR_open 0.6953642384
905    Simple_repeat     3     TE_peak        NR 0.0714285714
906              Alu   257     TE_peak        NR 0.8210862620
907              Alu    62     TE_peak        NR 0.4275862069
908        ERVL-MaLR    42     TE_peak        NR 0.2187500000
909     TcMar-Tigger   219     TE_peak   LR_open 1.0000000000
910              Alu   244     TE_peak   LR_open 0.7870967742
911        ERVL-MaLR    24     TE_peak        NR 0.2033898305
912               L2    68     TE_peak        NR 0.1552511416
913              Alu   164     TE_peak        NR 0.5540540541
914              MIR    66     TE_peak        NR 1.0000000000
915      hAT-Charlie   158     TE_peak        NR 1.0000000000
916             <NA>    NA not_TE_peak        NR           NA
917    Simple_repeat     1     TE_peak  ESR_open 0.0153846154
918               L1   258     TE_peak  ESR_open 1.0000000000
919               L2    50     TE_peak  ESR_open 1.0000000000
920              MIR   217     TE_peak  ESR_open 1.0000000000
921             ERV1    75     TE_peak        NR 0.3260869565
922       hAT-Tip100   167     TE_peak        NR 1.0000000000
923              MIR   124     TE_peak        NR 1.0000000000
924              Alu     9     TE_peak        NR 0.0378151261
925             <NA>    NA not_TE_peak   LR_open           NA
926      hAT-Charlie    82     TE_peak   LR_open 0.5578231293
927             ERV1   592     TE_peak   LR_open 1.0000000000
928             ERV1    65     TE_peak   LR_open 0.3757225434
929             <NA>    NA not_TE_peak        NR           NA
930               L2    50     TE_peak        NR 0.1953125000
931              MIR   122     TE_peak        NR 1.0000000000
932              MIR   244     TE_peak   LR_open 1.0000000000
933               L1   102     TE_peak        NR 0.2090163934
934    Simple_repeat    68     TE_peak        NR 1.0000000000
935    Simple_repeat    35     TE_peak        NR 1.0000000000
936      hAT-Charlie    50     TE_peak        NR 0.1408450704
937    Simple_repeat    20     TE_peak        NR 1.0000000000
938              Alu    43     TE_peak        NR 0.1378205128
939       hAT-Tip100   116     TE_peak   LR_open 1.0000000000
940             <NA>    NA not_TE_peak  LR_close           NA
941              Alu   133     TE_peak        NR 1.0000000000
942               L2    53     TE_peak  ESR_open 0.5698924731
943               L2    43     TE_peak  ESR_open 1.0000000000
944              MIR   170     TE_peak  ESR_open 0.8717948718
945             <NA>    NA not_TE_peak  ESR_open           NA
946             <NA>    NA not_TE_peak        NR           NA
947              Alu   105     TE_peak   LR_open 0.3453947368
948              MIR    85     TE_peak   LR_open 0.6800000000
949    Simple_repeat    40     TE_peak        NR 1.0000000000
950    Simple_repeat    25     TE_peak        NR 1.0000000000
951    Simple_repeat    53     TE_peak        NR 1.0000000000
952    Simple_repeat    58     TE_peak        NR 1.0000000000
953             DNA?    50     TE_peak        NR 0.7812500000
954              MIR   113     TE_peak   LR_open 1.0000000000
955              MIR   162     TE_peak        NR 1.0000000000
956    Simple_repeat    75     TE_peak        NR 1.0000000000
957               L2   439     TE_peak ESR_close 0.4675186368
958              MIR    55     TE_peak   LR_open 0.2488687783
959              CR1     2     TE_peak  LR_close 0.0168067227
960             <NA>    NA not_TE_peak ESR_close           NA
961              MIR   162     TE_peak  LR_close 0.8481675393
962               L2   110     TE_peak   LR_open 1.0000000000
963              Alu     2     TE_peak        NR 0.0067796610
964             <NA>    NA not_TE_peak  LR_close           NA
965             <NA>    NA not_TE_peak        NR           NA
966             <NA>    NA not_TE_peak ESR_close           NA
967              MIR   128     TE_peak   LR_open 1.0000000000
968              MIR     5     TE_peak        NR 0.0384615385
969    Simple_repeat    29     TE_peak        NR 1.0000000000
970    Simple_repeat    25     TE_peak        NR 1.0000000000
971    Simple_repeat    40     TE_peak        NR 1.0000000000
972    Simple_repeat    45     TE_peak        NR 1.0000000000
973    Simple_repeat    35     TE_peak  ESR_open 1.0000000000
974    Simple_repeat   547     TE_peak  ESR_open 1.0000000000
975    Simple_repeat    39     TE_peak   LR_open 0.7647058824
976             ERVL   487     TE_peak  ESR_open 0.3975510204
977             ERVL   699     TE_peak        NR 0.6020671835
978    Simple_repeat    26     TE_peak   LR_open 1.0000000000
979               L2    38     TE_peak        NR 1.0000000000
980             <NA>    NA not_TE_peak ESR_close           NA
981    Simple_repeat   224     TE_peak  ESR_open 1.0000000000
982    Simple_repeat    54     TE_peak  ESR_open 1.0000000000
983             <NA>    NA not_TE_peak        NR           NA
984             <NA>    NA not_TE_peak  EAR_open           NA
985             <NA>    NA not_TE_peak        NR           NA
986             <NA>    NA not_TE_peak  LR_close           NA
987             <NA>    NA not_TE_peak  LR_close           NA
988    Simple_repeat     6     TE_peak ESR_close 0.2000000000
989              MIR    53     TE_peak        NR 0.5300000000
990               L2   184     TE_peak        NR 1.0000000000
991              MIR    62     TE_peak  LR_close 1.0000000000
992               L2    41     TE_peak ESR_close 1.0000000000
993     TcMar-Tigger    95     TE_peak        NR 0.3220338983
994               L2    79     TE_peak        NR 0.0608628659
995              CR1   185     TE_peak        NR 0.6727272727
996              MIR    34     TE_peak        NR 0.4250000000
997             <NA>    NA not_TE_peak  ESR_open           NA
998             <NA>    NA not_TE_peak        NR           NA
999             <NA>    NA not_TE_peak  LR_close           NA
1000       ERVL-MaLR   484     TE_peak        NR 1.0000000000
1001   Simple_repeat    44     TE_peak EAR_close 1.0000000000
1002              L1     5     TE_peak   LR_open 0.0229357798
1003       ERVL-MaLR    66     TE_peak   LR_open 1.0000000000
1004            <NA>    NA not_TE_peak   LR_open           NA
1005             Alu    50     TE_peak        NR 0.3144654088
1006             Alu    48     TE_peak        NR 1.0000000000
1007  Low_complexity    15     TE_peak  LR_close 0.5555555556
1008              L1   331     TE_peak  LR_close 0.7306843267
1009             Alu    89     TE_peak   LR_open 0.9081632653
1010             MIR    70     TE_peak  LR_close 0.9333333333
1011             MIR    85     TE_peak  LR_close 1.0000000000
1012             Alu    57     TE_peak  LR_close 0.1770186335
1013   Simple_repeat    39     TE_peak        NR 1.0000000000
1014       ERVL-MaLR    48     TE_peak  ESR_open 0.8727272727
1015             Alu   189     TE_peak   LR_open 0.6156351792
1016             Alu    68     TE_peak   LR_open 0.2200647249
1017             MIR    23     TE_peak        NR 0.1755725191
1018              L2   773     TE_peak        NR 1.0000000000
1019              L2   286     TE_peak        NR 1.0000000000
1020            <NA>    NA not_TE_peak        NR           NA
1021     hAT-Charlie    28     TE_peak        NR 0.3255813953
1022   Simple_repeat    86     TE_peak        NR 1.0000000000
1023             MIR    50     TE_peak        NR 1.0000000000
1024             MIR   152     TE_peak        NR 0.9681528662
1025             Alu    28     TE_peak  EAR_open 0.0962199313
1026             Alu   108     TE_peak        NR 0.3576158940
1027             MIR   154     TE_peak        NR 1.0000000000
1028              L2   321     TE_peak   LR_open 0.7345537757
1029            <NA>    NA not_TE_peak        NR           NA
1030             Alu    85     TE_peak        NR 0.8947368421
1031             Alu   107     TE_peak        NR 1.0000000000
1032            <NA>    NA not_TE_peak ESR_close           NA
1033  Low_complexity    44     TE_peak        NR 1.0000000000
1034             MIR    59     TE_peak        NR 0.8428571429
1035            <NA>    NA not_TE_peak        NR           NA
1036            <NA>    NA not_TE_peak        NR           NA
1037              L2     9     TE_peak        NR 0.0154109589
1038             CR1   158     TE_peak        NR 0.6666666667
1039             Alu    72     TE_peak        NR 0.2250000000
1040   Simple_repeat    32     TE_peak   LR_open 1.0000000000
1041             Alu   296     TE_peak   LR_open 1.0000000000
1042            <NA>    NA not_TE_peak        NR           NA
1043             Alu   152     TE_peak        NR 0.4856230032
1044             Alu    48     TE_peak        NR 0.1558441558
1045     hAT-Charlie   341     TE_peak        NR 1.0000000000
1046             Alu    87     TE_peak        NR 0.2779552716
1047            <NA>    NA not_TE_peak        NR           NA
1048             Alu   156     TE_peak        NR 0.5016077170
1049     hAT-Charlie   193     TE_peak        NR 1.0000000000
1050             Alu    73     TE_peak   LR_open 0.2310126582
1051             MIR    68     TE_peak   LR_open 1.0000000000
1052              L2   105     TE_peak   LR_open 1.0000000000
1053             MIR    37     TE_peak   LR_open 0.5362318841
1054             Alu    78     TE_peak  LR_close 0.2222222222
1055             CR1   348     TE_peak        NR 0.9109947644
1056             Alu    57     TE_peak        NR 0.6333333333
1057     hAT-Charlie    40     TE_peak   LR_open 1.0000000000
1058             Alu   277     TE_peak   LR_open 1.0000000000
1059             Alu   299     TE_peak   LR_open 1.0000000000
1060     hAT-Charlie   145     TE_peak   LR_open 0.8787878788
1061             Alu    83     TE_peak ESR_close 0.6384615385
1062  Low_complexity    45     TE_peak        NR 1.0000000000
1063   Simple_repeat    19     TE_peak        NR 1.0000000000
1064             MIR    10     TE_peak        NR 0.0478468900
1065            <NA>    NA not_TE_peak        NR           NA
1066            <NA>    NA not_TE_peak        NR           NA
1067            <NA>    NA not_TE_peak        NR           NA
1068            <NA>    NA not_TE_peak        NR           NA
1069            <NA>    NA not_TE_peak        NR           NA
1070              L2    74     TE_peak        NR 1.0000000000
1071            <NA>    NA not_TE_peak  LR_close           NA
1072             MIR    44     TE_peak  LR_close 0.7457627119
1073     hAT-Charlie   190     TE_peak  LR_close 1.0000000000
1074             MIR   211     TE_peak  LR_close 0.9678899083
1075            <NA>    NA not_TE_peak   LR_open           NA
1076             Alu   199     TE_peak  ESR_open 0.6524590164
1077             Alu   129     TE_peak ESR_close 0.4961538462
1078            <NA>    NA not_TE_peak        NR           NA
1079   Simple_repeat    29     TE_peak  LR_close 1.0000000000
1080   Simple_repeat    38     TE_peak  LR_close 1.0000000000
1081             Alu    74     TE_peak        NR 0.2450331126
1082             MIR    30     TE_peak        NR 0.2068965517
1083            <NA>    NA not_TE_peak        NR           NA
1084             Alu   104     TE_peak        NR 0.3478260870
1085             Alu    11     TE_peak        NR 0.0374149660
1086            <NA>    NA not_TE_peak        NR           NA
1087             Alu    56     TE_peak   not_mrc 0.1879194631
1088            ERVL    15     TE_peak   not_mrc 1.0000000000
1089             Alu   290     TE_peak   not_mrc 1.0000000000
1090            ERVL   112     TE_peak   not_mrc 1.0000000000
1091            ERVL    56     TE_peak   not_mrc 1.0000000000
1092   Simple_repeat    59     TE_peak   LR_open 1.0000000000
1093   Simple_repeat    24     TE_peak   LR_open 1.0000000000
1094   Simple_repeat     6     TE_peak   LR_open 1.0000000000
1095             Alu   114     TE_peak   LR_open 0.4810126582
1096             Alu   299     TE_peak        NR 1.0000000000
1097             Alu    32     TE_peak        NR 0.1849710983
1098             Alu   100     TE_peak  LR_close 0.4739336493
1099   Simple_repeat    32     TE_peak  LR_close 1.0000000000
1100             Alu    24     TE_peak  LR_close 0.0848056537
1101            <NA>    NA not_TE_peak        NR           NA
1102  Low_complexity    43     TE_peak        NR 1.0000000000
1103     hAT-Charlie   174     TE_peak  LR_close 0.4578947368
1104       TcMar-Tc2   302     TE_peak  LR_close 1.0000000000
1105              L2   152     TE_peak  LR_close 0.5033112583
1106       ERVL-MaLR   195     TE_peak        NR 0.5284552846
1107       ERVL-MaLR    69     TE_peak        NR 1.0000000000
1108       ERVL-MaLR   346     TE_peak        NR 1.0000000000
1109       ERVL-MaLR    94     TE_peak        NR 0.2520107239
1110              L2   202     TE_peak   not_mrc 0.3327841845
1111      hAT-Tip100   156     TE_peak        NR 1.0000000000
1112             Alu   116     TE_peak    ESR_OC 0.4084507042
1113   Simple_repeat    25     TE_peak    ESR_OC 1.0000000000
1114             Alu   209     TE_peak   LR_open 0.8744769874
1115             Alu   104     TE_peak   LR_open 1.0000000000
1116       ERVL-MaLR    11     TE_peak        NR 0.0964912281
1117              L2   113     TE_peak        NR 0.7018633540
1118             Alu   135     TE_peak   LR_open 0.4655172414
1119             Alu     3     TE_peak   LR_open 0.0168539326
1120              L2   902     TE_peak   LR_open 0.9308565531
1121              L1   476     TE_peak   LR_open 0.8336252189
1122              L2   157     TE_peak   LR_open 1.0000000000
1123             Alu    11     TE_peak   LR_open 0.0347003155
1124   Simple_repeat    28     TE_peak   LR_open 0.9655172414
1125              L2     7     TE_peak   LR_open 0.0534351145
1126             MIR    57     TE_peak   LR_open 0.8906250000
1127             MIR   215     TE_peak   LR_open 1.0000000000
1128   Simple_repeat    49     TE_peak   LR_open 1.0000000000
1129             Alu    56     TE_peak   LR_open 0.3274853801
1130             Alu   256     TE_peak   LR_open 0.8393442623
1131            ERVL   230     TE_peak        NR 0.8778625954
1132            ERVL   111     TE_peak        NR 0.7928571429
1133             Alu   124     TE_peak        NR 0.4119601329
1134              L1   122     TE_peak        NR 1.0000000000
1135   Simple_repeat    20     TE_peak        NR 1.0000000000
1136   Simple_repeat    32     TE_peak        NR 1.0000000000
1137             MIR   199     TE_peak        NR 1.0000000000
1138              L2   416     TE_peak        NR 0.4566410538
1139             Alu    14     TE_peak        NR 0.0546875000
1140             Alu   136     TE_peak        NR 1.0000000000
1141             Alu   170     TE_peak        NR 0.5414012739
1142             Alu   155     TE_peak   LR_open 0.5201342282
1143   Simple_repeat    76     TE_peak        NR 1.0000000000
1144            <NA>    NA not_TE_peak        NR           NA
1145            <NA>    NA not_TE_peak  EAR_open           NA
1146             Alu   146     TE_peak EAR_close 0.4932432432
1147             MIR    62     TE_peak EAR_close 1.0000000000
1148             Alu   174     TE_peak   LR_open 0.5918367347
1149             Alu   149     TE_peak   LR_open 1.0000000000
1150    TcMar-Tigger   402     TE_peak   LR_open 0.6943005181
1151             Alu   141     TE_peak    ESR_OC 0.4592833876
1152             Alu   253     TE_peak        NR 0.8605442177
1153              L2   191     TE_peak        NR 0.8925233645
1154            <NA>    NA not_TE_peak ESR_close           NA
1155            <NA>    NA not_TE_peak  LR_close           NA
1156            <NA>    NA not_TE_peak  LR_close           NA
1157            <NA>    NA not_TE_peak        NR           NA
1158             Alu   203     TE_peak        NR 0.6904761905
1159            <NA>    NA not_TE_peak        NR           NA
1160              L2   144     TE_peak ESR_close 0.4272997033
1161             Alu    45     TE_peak ESR_close 0.1480263158
1162            <NA>    NA not_TE_peak   LR_open           NA
1163            <NA>    NA not_TE_peak        NR           NA
1164            <NA>    NA not_TE_peak   LR_open           NA
1165            <NA>    NA not_TE_peak   LR_open           NA
1166             Alu    10     TE_peak   LR_open 0.0310559006
1167             Alu    55     TE_peak        NR 0.1851851852
1168             MIR    67     TE_peak        NR 0.3130841121
1169              L2    40     TE_peak        NR 1.0000000000
1170             MIR   120     TE_peak        NR 1.0000000000
1171             Alu    10     TE_peak  LR_close 0.0320512821
1172             MIR     8     TE_peak   LR_open 0.0412371134
1173             Alu   181     TE_peak   LR_open 0.6073825503
1174            <NA>    NA not_TE_peak        NR           NA
1175             Alu    62     TE_peak  EAR_open 0.2844036697
1176             Alu   157     TE_peak   LR_open 0.5286195286
1177             MIR    58     TE_peak        NR 0.2959183673
1178   Simple_repeat    41     TE_peak        NR 1.0000000000
1179            <NA>    NA not_TE_peak        NR           NA
1180            <NA>    NA not_TE_peak        NR           NA
1181             Alu   229     TE_peak        NR 0.7557755776
1182              L2    59     TE_peak        NR 1.0000000000
1183            <NA>    NA not_TE_peak  LR_close           NA
1184            <NA>    NA not_TE_peak        NR           NA
1185            <NA>    NA not_TE_peak        NR           NA
1186            DNA?   112     TE_peak EAR_close 1.0000000000
1187            ERVL   290     TE_peak  LR_close 0.9863945578
1188            ERVL    14     TE_peak  LR_close 0.0657276995
1189              L2   314     TE_peak        NR 0.8626373626
1190              L2    61     TE_peak        NR 1.0000000000
1191            <NA>    NA not_TE_peak        NR           NA
1192              L1   161     TE_peak        NR 0.3418259023
1193              L1    30     TE_peak  LR_close 0.2307692308
1194   Simple_repeat    42     TE_peak  LR_close 1.0000000000
1195            <NA>    NA not_TE_peak        NR           NA
1196       ERVL-MaLR   375     TE_peak        NR 0.9191176471
1197              L1    15     TE_peak        NR 0.3061224490
1198        RTE-BovB   676     TE_peak ESR_close 0.8355995056
1199       5S-Deu-L2   108     TE_peak        NR 1.0000000000
1200            <NA>    NA not_TE_peak  EAR_open           NA
1201            <NA>    NA not_TE_peak  EAR_open           NA
1202            <NA>    NA not_TE_peak        NR           NA
1203   Simple_repeat    23     TE_peak   LR_open 1.0000000000
1204   Simple_repeat   297     TE_peak  ESR_open 0.2133620690
1205  Low_complexity     6     TE_peak ESR_close 0.1090909091
1206            <NA>    NA not_TE_peak        NR           NA
1207            <NA>    NA not_TE_peak   LR_open           NA
1208            <NA>    NA not_TE_peak        NR           NA
1209            <NA>    NA not_TE_peak        NR           NA
1210   Simple_repeat    35     TE_peak        NR 1.0000000000
1211   Simple_repeat    81     TE_peak        NR 1.0000000000
1212   Simple_repeat    66     TE_peak        NR 1.0000000000
1213   Simple_repeat    45     TE_peak        NR 1.0000000000
1214   Simple_repeat    38     TE_peak        NR 1.0000000000
1215   Simple_repeat    96     TE_peak        NR 1.0000000000
1216   Simple_repeat    49     TE_peak        NR 1.0000000000
1217            <NA>    NA not_TE_peak        NR           NA
1218            <NA>    NA not_TE_peak        NR           NA
1219            <NA>    NA not_TE_peak        NR           NA
1220             MIR    78     TE_peak  LR_close 0.6500000000
1221   Simple_repeat    26     TE_peak  LR_close 1.0000000000
1222   Simple_repeat    33     TE_peak  LR_close 1.0000000000
1223            <NA>    NA not_TE_peak  LR_close           NA
1224            <NA>    NA not_TE_peak        NR           NA
1225             Alu    81     TE_peak   LR_open 0.2793103448
1226     hAT-Charlie   186     TE_peak   LR_open 1.0000000000
1227             Alu   272     TE_peak   LR_open 0.8717948718
1228            <NA>    NA not_TE_peak  LR_close           NA
1229            <NA>    NA not_TE_peak  LR_close           NA
1230              L2   108     TE_peak ESR_close 0.9310344828
1231              L2    76     TE_peak ESR_close 1.0000000000
1232      hAT-Tip100    33     TE_peak  ESR_open 0.1875000000
1233             MIR     5     TE_peak        NR 0.0211864407
1234             MIR   142     TE_peak        NR 1.0000000000
1235            <NA>    NA not_TE_peak        NR           NA
1236             MIR   126     TE_peak ESR_close 0.9545454545
1237            <NA>    NA not_TE_peak        NR           NA
1238   Simple_repeat    65     TE_peak        NR 1.0000000000
1239   Simple_repeat   120     TE_peak        NR 1.0000000000
1240   Simple_repeat    58     TE_peak  LR_close 1.0000000000
1241            <NA>    NA not_TE_peak   LR_open           NA
1242             MIR    86     TE_peak  LR_close 0.5695364238
1243  Low_complexity    41     TE_peak  LR_close 1.0000000000
1244             Alu    61     TE_peak  LR_close 0.1974110032
1245   Simple_repeat     5     TE_peak        NR 0.1162790698
1246            <NA>    NA not_TE_peak ESR_close           NA
1247             MIR    47     TE_peak        NR 1.0000000000
1248            <NA>    NA not_TE_peak        NR           NA
1249   Simple_repeat   229     TE_peak        NR 1.0000000000
1250            <NA>    NA not_TE_peak ESR_close           NA
1251   Simple_repeat    75     TE_peak        NR 1.0000000000
1252  Low_complexity    38     TE_peak        NR 1.0000000000
1253              L2   259     TE_peak        NR 1.0000000000
1254             Alu    48     TE_peak        NR 0.1621621622
1255            <NA>    NA not_TE_peak   LR_open           NA
1256             MIR    47     TE_peak        NR 0.2460732984
1257             MIR   172     TE_peak   LR_open 1.0000000000
1258   Simple_repeat    93     TE_peak   LR_open 1.0000000000
1259            <NA>    NA not_TE_peak  LR_close           NA
1260              L2   174     TE_peak  LR_close 0.8487804878
1261            <NA>    NA not_TE_peak        NR           NA
1262            <NA>    NA not_TE_peak        NR           NA
1263             Alu    55     TE_peak ESR_close 0.1821192053
1264     hAT-Charlie    87     TE_peak ESR_close 1.0000000000
1265             MIR   189     TE_peak ESR_close 1.0000000000
1266             Alu    77     TE_peak ESR_close 0.3347826087
1267             Alu    70     TE_peak        NR 0.3804347826
1268             MIR    59     TE_peak        NR 1.0000000000
1269             MIR   195     TE_peak        NR 1.0000000000
1270  Low_complexity    55     TE_peak ESR_close 1.0000000000
1271             MIR    75     TE_peak        NR 0.5474452555
1272   Simple_repeat    39     TE_peak        NR 1.0000000000
1273              L2   274     TE_peak        NR 0.9042904290
1274             MIR    60     TE_peak        NR 0.3409090909
1275            <NA>    NA not_TE_peak        NR           NA
1276   Simple_repeat    40     TE_peak        NR 1.0000000000
1277  Low_complexity    36     TE_peak        NR 1.0000000000
1278  Low_complexity    53     TE_peak        NR 1.0000000000
1279     hAT-Charlie   124     TE_peak        NR 0.2123287671
1280             MIR    53     TE_peak        NR 1.0000000000
1281             Alu     4     TE_peak   LR_open 0.0137931034
1282            <NA>    NA not_TE_peak        NR           NA
1283     hAT-Charlie    64     TE_peak        NR 0.3832335329
1284           snRNA    64     TE_peak  LR_close 1.0000000000
1285             Alu    95     TE_peak   LR_open 0.3209459459
1286            <NA>    NA not_TE_peak        NR           NA
1287              L1     6     TE_peak  LR_close 0.0500000000
1288     hAT-Charlie   145     TE_peak  LR_close 0.4096045198
1289            <NA>    NA not_TE_peak ESR_close           NA
1290   Simple_repeat    34     TE_peak        NR 1.0000000000
1291             Alu   115     TE_peak   LR_open 0.3820598007
1292             MIR    24     TE_peak  ESR_open 0.2181818182
1293      hAT-Tip100   180     TE_peak  ESR_open 1.0000000000
1294             Alu    83     TE_peak  ESR_open 0.6102941176
1295             MIR    28     TE_peak   LR_open 0.1783439490
1296       TcMar-Tc2    62     TE_peak   LR_open 1.0000000000
1297             Alu   281     TE_peak   LR_open 1.0000000000
1298       TcMar-Tc2    23     TE_peak   LR_open 1.0000000000
1299             Alu     8     TE_peak   LR_open 0.0260586319
1300            <NA>    NA not_TE_peak        NR           NA
1301   hAT-Blackjack    48     TE_peak        NR 0.2191780822
1302              L2    43     TE_peak        NR 1.0000000000
1303   Simple_repeat   284     TE_peak        NR 1.0000000000
1304            <NA>    NA not_TE_peak        NR           NA
1305             CR1   173     TE_peak ESR_close 0.3295238095
1306   Simple_repeat    49     TE_peak  LR_close 1.0000000000
1307            <NA>    NA not_TE_peak        NR           NA
1308              L2    62     TE_peak        NR 0.2683982684
1309   Simple_repeat    22     TE_peak        NR 1.0000000000
1310             MIR    42     TE_peak        NR 0.5454545455
1311              L2    74     TE_peak        NR 0.3775510204
1312            <NA>    NA not_TE_peak ESR_close           NA
1313   Simple_repeat   110     TE_peak        NR 0.7096774194
1314   Simple_repeat    73     TE_peak        NR 1.0000000000
1315   Simple_repeat   177     TE_peak        NR 1.0000000000
1316            <NA>    NA not_TE_peak ESR_close           NA
1317             MIR   204     TE_peak   LR_open 1.0000000000
1318   Simple_repeat   965     TE_peak   LR_open 1.0000000000
1319             Alu   148     TE_peak        NR 0.4916943522
1320             MIR     7     TE_peak ESR_close 0.0409356725
1321            ERVL   196     TE_peak        NR 0.2490470140
1322             MIR   179     TE_peak ESR_close 1.0000000000
1323   Simple_repeat    17     TE_peak ESR_close 0.3148148148
1324      hAT-Tip100    51     TE_peak        NR 1.0000000000
1325             MIR    69     TE_peak        NR 1.0000000000
1326             Alu    49     TE_peak  LR_close 0.1991869919
1327            <NA>    NA not_TE_peak        NR           NA
1328   Simple_repeat    37     TE_peak        NR 1.0000000000
1329             MIR   103     TE_peak   LR_open 1.0000000000
1330            <NA>    NA not_TE_peak        NR           NA
1331            <NA>    NA not_TE_peak        NR           NA
1332              L1   183     TE_peak        NR 1.0000000000
1333             Alu    72     TE_peak        NR 0.3380281690
1334             MIR   211     TE_peak   LR_open 1.0000000000
1335       MULE-MuDR    60     TE_peak   LR_open 1.0000000000
1336            <NA>    NA not_TE_peak        NR           NA
1337             MIR    71     TE_peak   LR_open 1.0000000000
1338             Alu    30     TE_peak   LR_open 0.0993377483
1339             Alu    89     TE_peak  LR_close 0.2899022801
1340            <NA>    NA not_TE_peak        NR           NA
1341             Alu   102     TE_peak        NR 0.3578947368
1342             CR1    75     TE_peak        NR 1.0000000000
1343             MIR    92     TE_peak        NR 1.0000000000
1344   Simple_repeat    71     TE_peak        NR 1.0000000000
1345   Simple_repeat    53     TE_peak   LR_open 1.0000000000
1346   Simple_repeat    54     TE_peak   LR_open 1.0000000000
1347             Alu   146     TE_peak        NR 0.5195729537
1348             Alu   130     TE_peak        NR 0.7558139535
1349             MIR   148     TE_peak        NR 0.6271186441
1350   Simple_repeat    38     TE_peak        NR 1.0000000000
1351   Simple_repeat     8     TE_peak        NR 0.2424242424
1352   Simple_repeat     8     TE_peak   not_mrc 0.2424242424
1353   Simple_repeat   569     TE_peak   LR_open 0.8767334361
1354             MIR     6     TE_peak        NR 0.0810810811
1355             MIR   133     TE_peak        NR 0.6963350785
1356             MIR    95     TE_peak        NR 1.0000000000
1357             MIR    23     TE_peak        NR 1.0000000000
1358             Alu    13     TE_peak        NR 0.0509803922
1359              L1   134     TE_peak        NR 0.6203703704
1360             MIR   161     TE_peak        NR 0.9938271605
1361   Simple_repeat   126     TE_peak        NR 0.5228215768
1362            ERV1    52     TE_peak        NR 0.1524926686
1363             MIR    96     TE_peak        NR 1.0000000000
1364   Simple_repeat    39     TE_peak EAR_close 1.0000000000
1365             MIR   123     TE_peak EAR_close 1.0000000000
1366              L2   235     TE_peak        NR 0.7781456954
1367       ERVL-MaLR   210     TE_peak        NR 0.5898876404
1368            <NA>    NA not_TE_peak        NR           NA
1369            <NA>    NA not_TE_peak        NR           NA
1370            <NA>    NA not_TE_peak        NR           NA
1371   Simple_repeat    45     TE_peak ESR_close 1.0000000000
1372              L2   116     TE_peak ESR_close 0.3625000000
1373             MIR    56     TE_peak ESR_close 0.5600000000
1374            <NA>    NA not_TE_peak ESR_close           NA
1375            <NA>    NA not_TE_peak EAR_close           NA
1376            <NA>    NA not_TE_peak  LR_close           NA
1377   Simple_repeat    33     TE_peak        NR 1.0000000000
1378             Alu   248     TE_peak        NR 0.8522336770
1379              L1   125     TE_peak        NR 1.0000000000
1380              L1   265     TE_peak        NR 0.8493589744
1381              L1    18     TE_peak        NR 0.0576923077
1382              L1   228     TE_peak        NR 1.0000000000
1383             Alu   215     TE_peak        NR 0.7597173145
1384             MIR    38     TE_peak        NR 0.1958762887
1385            <NA>    NA not_TE_peak  LR_close           NA
1386            <NA>    NA not_TE_peak ESR_close           NA
1387            <NA>    NA not_TE_peak ESR_close           NA
1388             MIR   167     TE_peak ESR_close 0.8882978723
1389      hAT-Tip100    68     TE_peak ESR_close 1.0000000000
1390   Simple_repeat    38     TE_peak  LR_close 1.0000000000
1391             Alu    30     TE_peak  LR_close 0.1176470588
1392            <NA>    NA not_TE_peak  LR_close           NA
1393            <NA>    NA not_TE_peak        NR           NA
1394             MIR   108     TE_peak ESR_close 1.0000000000
1395   Simple_repeat    29     TE_peak ESR_close 0.8529411765
1396   Simple_repeat    19     TE_peak ESR_close 0.4871794872
1397            <NA>    NA not_TE_peak ESR_close           NA
1398             MIR   164     TE_peak        NR 1.0000000000
1399   Simple_repeat    13     TE_peak        NR 0.0285087719
1400            <NA>    NA not_TE_peak        NR           NA
1401           snRNA   120     TE_peak ESR_close 1.0000000000
1402     hAT-Charlie   271     TE_peak ESR_close 1.0000000000
1403       ERVL-MaLR   154     TE_peak ESR_close 1.0000000000
1404             Alu   320     TE_peak ESR_close 1.0000000000
1405   Simple_repeat    48     TE_peak ESR_close 1.0000000000
1406           snRNA     4     TE_peak ESR_close 0.0333333333
1407            <NA>    NA not_TE_peak        NR           NA
1408   Simple_repeat    32     TE_peak        NR 1.0000000000
1409   Simple_repeat    99     TE_peak        NR 1.0000000000
1410  Low_complexity    66     TE_peak        NR 1.0000000000
1411   Simple_repeat    24     TE_peak        NR 1.0000000000
1412             Alu    92     TE_peak        NR 0.2967741935
1413             MIR   105     TE_peak        NR 1.0000000000
1414   Simple_repeat    54     TE_peak        NR 1.0000000000
1415   Simple_repeat    44     TE_peak        NR 1.0000000000
1416             MIR   152     TE_peak        NR 1.0000000000
1417             MIR    74     TE_peak        NR 0.3394495413
1418             Alu    67     TE_peak ESR_close 0.2278911565
1419             MIR    46     TE_peak ESR_close 1.0000000000
1420   Simple_repeat    32     TE_peak ESR_close 1.0000000000
1421            <NA>    NA not_TE_peak   not_mrc           NA
1422            <NA>    NA not_TE_peak  LR_close           NA
1423     hAT-Charlie    23     TE_peak  LR_close 0.3239436620
1424              L2   153     TE_peak  LR_close 0.9622641509
1425     hAT-Charlie    37     TE_peak        NR 0.2114285714
1426              L2    35     TE_peak ESR_close 0.3932584270
1427              L2   193     TE_peak ESR_close 1.0000000000
1428             Alu    13     TE_peak        NR 0.0426229508
1429             Alu   182     TE_peak   LR_open 0.6211604096
1430            <NA>    NA not_TE_peak        NR           NA
1431              L2    99     TE_peak  LR_close 1.0000000000
1432             Alu    45     TE_peak  LR_close 0.1505016722
1433             MIR    64     TE_peak        NR 0.4923076923
1434             MIR   131     TE_peak        NR 1.0000000000
1435            <NA>    NA not_TE_peak EAR_close           NA
1436             MIR   124     TE_peak ESR_close 1.0000000000
1437            ERV1   184     TE_peak        NR 0.4026258206
1438   Simple_repeat    36     TE_peak        NR 0.6000000000
1439              L2   249     TE_peak EAR_close 0.8767605634
1440            <NA>    NA not_TE_peak        NR           NA
1441             Alu    40     TE_peak        NR 0.1413427562
1442      hAT-Tip100    91     TE_peak        NR 1.0000000000
1443             MIR    87     TE_peak        NR 1.0000000000
1444             CR1    72     TE_peak  LR_close 0.4235294118
1445              L2   347     TE_peak  LR_close 0.6066433566
1446       ERVL-MaLR    15     TE_peak        NR 0.0781250000
1447            ERV1   363     TE_peak        NR 1.0000000000
1448             Alu    73     TE_peak        NR 0.2339743590
1449            <NA>    NA not_TE_peak  LR_close           NA
1450            <NA>    NA not_TE_peak   not_mrc           NA
1451            ERVL   167     TE_peak        NR 0.9277777778
1452             Alu   210     TE_peak        NR 0.6796116505
1453             Alu   100     TE_peak        NR 0.3472222222
1454   Simple_repeat    58     TE_peak        NR 1.0000000000
1455     hAT-Charlie   158     TE_peak        NR 1.0000000000
1456             MIR   150     TE_peak        NR 0.6912442396
1457            <NA>    NA not_TE_peak        NR           NA
1458             MIR    41     TE_peak EAR_close 0.2102564103
1459             MIR   119     TE_peak EAR_close 1.0000000000
1460            <NA>    NA not_TE_peak        NR           NA
1461              L2   153     TE_peak   LR_open 0.3963730570
1462     hAT-Charlie     1     TE_peak        NR 0.0096153846
1463             MIR    13     TE_peak        NR 0.0543933054
1464             MIR   123     TE_peak        NR 1.0000000000
1465            <NA>    NA not_TE_peak ESR_close           NA
1466              L2     8     TE_peak        NR 0.0253968254
1467             Alu   149     TE_peak        NR 1.0000000000
1468              L2    24     TE_peak        NR 0.0926640927
1469            <NA>    NA not_TE_peak   LR_open           NA
1470            <NA>    NA not_TE_peak        NR           NA
1471             Alu   138     TE_peak ESR_close 0.4911032028
1472        RTE-BovB    96     TE_peak ESR_close 1.0000000000
1473            <NA>    NA not_TE_peak        NR           NA
1474            <NA>    NA not_TE_peak        NR           NA
1475             Alu    53     TE_peak        NR 0.1790540541
1476            ERVL   329     TE_peak        NR 0.4416107383
1477    TcMar-Tigger   200     TE_peak        NR 0.5714285714
1478             Alu   260     TE_peak   LR_open 0.8306709265
1479            <NA>    NA not_TE_peak EAR_close           NA
1480            <NA>    NA not_TE_peak  ESR_open           NA
1481            <NA>    NA not_TE_peak        NR           NA
1482             CR1    89     TE_peak   LR_open 0.7007874016
1483             MIR    49     TE_peak        NR 0.2237442922
1484             MIR    65     TE_peak        NR 0.3551912568
1485              L2   472     TE_peak        NR 0.7527910686
1486     hAT-Charlie    33     TE_peak        NR 0.0967741935
1487             MIR   102     TE_peak        NR 1.0000000000
1488   Simple_repeat    33     TE_peak EAR_close 1.0000000000
1489   Simple_repeat    20     TE_peak EAR_close 1.0000000000
1490   Simple_repeat    18     TE_peak EAR_close 1.0000000000
1491             MIR    28     TE_peak        NR 0.1124497992
1492    TcMar-Tigger   178     TE_peak        NR 0.4696569921
1493            <NA>    NA not_TE_peak        NR           NA
1494             MIR    67     TE_peak        NR 1.0000000000
1495             MIR   175     TE_peak        NR 1.0000000000
1496            <NA>    NA not_TE_peak   not_mrc           NA
1497            <NA>    NA not_TE_peak        NR           NA
1498            <NA>    NA not_TE_peak  EAR_open           NA
1499    TcMar-Tigger     8     TE_peak  LR_close 0.0842105263
1500            <NA>    NA not_TE_peak        NR           NA
1501            <NA>    NA not_TE_peak        NR           NA
1502            <NA>    NA not_TE_peak   LR_open           NA
1503              L2    87     TE_peak        NR 1.0000000000
1504            <NA>    NA not_TE_peak   LR_open           NA
1505   Simple_repeat    30     TE_peak        NR 0.6382978723
1506              L2   298     TE_peak        NR 0.7412935323
1507            <NA>    NA not_TE_peak        NR           NA
1508             Alu    75     TE_peak   LR_open 0.6465517241
1509              L1   160     TE_peak  LR_close 0.4419889503
1510              L1    37     TE_peak  LR_close 0.2824427481
1511              L1   102     TE_peak        NR 1.0000000000
1512             MIR    16     TE_peak ESR_close 0.0952380952
1513             MIR   117     TE_peak  EAR_open 1.0000000000
1514             Alu   123     TE_peak   LR_open 0.5278969957
1515              L2    77     TE_peak  LR_close 0.6062992126
1516             MIR    42     TE_peak        NR 0.2427745665
1517            <NA>    NA not_TE_peak  LR_close           NA
1518             Alu   160     TE_peak   LR_open 0.5161290323
1519     hAT-Charlie   127     TE_peak   LR_open 1.0000000000
1520     hAT-Charlie   119     TE_peak   LR_open 1.0000000000
1521              L2   141     TE_peak   LR_open 0.3852459016
1522             MIR    37     TE_peak        NR 1.0000000000
1523             Alu   126     TE_peak        NR 0.4104234528
1524   Simple_repeat   602     TE_peak   LR_open 1.0000000000
1525             MIR    15     TE_peak   LR_open 0.1219512195
1526              L2    64     TE_peak        NR 0.7619047619
1527  Low_complexity    52     TE_peak        NR 1.0000000000
1528             MIR   125     TE_peak   LR_open 0.8064516129
1529     hAT-Charlie   151     TE_peak   LR_open 1.0000000000
1530             MIR    79     TE_peak   LR_open 0.8586956522
1531            <NA>    NA not_TE_peak   LR_open           NA
1532   Simple_repeat    50     TE_peak        NR 1.0000000000
1533     hAT-Charlie   100     TE_peak        NR 1.0000000000
1534  Low_complexity    42     TE_peak        NR 1.0000000000
1535            ERV1    18     TE_peak        NR 0.3829787234
1536              L2   158     TE_peak        NR 1.0000000000
1537   Simple_repeat   101     TE_peak        NR 1.0000000000
1538              L2   182     TE_peak        NR 0.8544600939
1539            ERV1    67     TE_peak   LR_open 1.0000000000
1540             Alu   295     TE_peak   LR_open 1.0000000000
1541            ERV1    17     TE_peak   LR_open 1.0000000000
1542             Alu    68     TE_peak   LR_open 0.2214983713
1543            <NA>    NA not_TE_peak        NR           NA
1544   Simple_repeat    38     TE_peak ESR_close 0.9268292683
1545             Alu    67     TE_peak        NR 0.2233333333
1546            <NA>    NA not_TE_peak  LR_close           NA
1547            <NA>    NA not_TE_peak        NR           NA
1548            <NA>    NA not_TE_peak        NR           NA
1549            <NA>    NA not_TE_peak        NR           NA
1550       ERVL-MaLR    53     TE_peak   not_mrc 1.0000000000
1551   hAT-Blackjack    37     TE_peak   not_mrc 0.2587412587
1552             MIR   166     TE_peak   not_mrc 1.0000000000
1553            ERV1   107     TE_peak   not_mrc 0.5119617225
1554            ERVL     3     TE_peak EAR_close 0.0714285714
1555             MIR   159     TE_peak        NR 0.6625000000
1556            <NA>    NA not_TE_peak        NR           NA
1557  Low_complexity    36     TE_peak  LR_close 1.0000000000
1558       ERVL-MaLR   354     TE_peak        NR 0.9806094183
1559              L1    29     TE_peak ESR_close 0.0552380952
1560            <NA>    NA not_TE_peak        NR           NA
1561   Simple_repeat    20     TE_peak        NR 1.0000000000
1562            <NA>    NA not_TE_peak        NR           NA
1563            ERV1     2     TE_peak ESR_close 0.0080971660
1564             Alu   272     TE_peak ESR_close 0.9251700680
1565             Alu   197     TE_peak        NR 1.0000000000
1566            <NA>    NA not_TE_peak        NR           NA
1567             Alu    45     TE_peak ESR_close 0.1480263158
1568             Alu    24     TE_peak        NR 0.0808080808
1569   hAT-Blackjack   102     TE_peak        NR 1.0000000000
1570             MIR    39     TE_peak        NR 1.0000000000
1571              L2    84     TE_peak        NR 0.6511627907
1572   Simple_repeat    40     TE_peak        NR 1.0000000000
1573     hAT-Charlie   123     TE_peak  LR_close 0.6089108911
1574             MIR   111     TE_peak  LR_close 1.0000000000
1575             MIR   229     TE_peak  LR_close 1.0000000000
1576             MIR    74     TE_peak  LR_close 0.9610389610
1577   Simple_repeat    51     TE_peak        NR 1.0000000000
1578   Simple_repeat    87     TE_peak        NR 1.0000000000
1579   Simple_repeat    84     TE_peak        NR 1.0000000000
1580   Simple_repeat    22     TE_peak        NR 1.0000000000
1581             Alu   180     TE_peak        NR 0.5940594059
1582             Alu    68     TE_peak        NR 0.2266666667
1583             MIR   150     TE_peak   LR_open 1.0000000000
1584             MIR   179     TE_peak   LR_open 1.0000000000
1585     hAT-Charlie   103     TE_peak        NR 1.0000000000
1586             MIR    30     TE_peak        NR 0.1363636364
1587     hAT-Charlie   154     TE_peak        NR 1.0000000000
1588              L2     4     TE_peak        NR 0.0076628352
1589              L2    63     TE_peak        NR 0.1536585366
1590            <NA>    NA not_TE_peak        NR           NA
1591   Simple_repeat    13     TE_peak        NR 0.3250000000
1592            <NA>    NA not_TE_peak ESR_close           NA
1593   Simple_repeat    38     TE_peak        NR 1.0000000000
1594            <NA>    NA not_TE_peak        NR           NA
1595            ERVL    74     TE_peak ESR_close 1.0000000000
1596   Simple_repeat   109     TE_peak ESR_close 1.0000000000
1597     hAT-Charlie   164     TE_peak        NR 0.9479768786
1598          TcMar?    48     TE_peak        NR 0.3333333333
1599            <NA>    NA not_TE_peak        NR           NA
1600             MIR    68     TE_peak        NR 0.4892086331
1601             MIR    68     TE_peak ESR_close 0.4276729560
1602       ERVL-MaLR   300     TE_peak   LR_open 0.9202453988
1603       ERVL-MaLR    44     TE_peak   LR_open 1.0000000000
1604              L2   104     TE_peak        NR 1.0000000000
1605             MIR    79     TE_peak        NR 1.0000000000
1606            <NA>    NA not_TE_peak        NR           NA
1607             Alu   284     TE_peak   LR_open 1.0000000000
1608   Simple_repeat    40     TE_peak   LR_open 1.0000000000
1609       ERVL-MaLR   124     TE_peak   LR_open 0.9465648855
1610              L1   120     TE_peak        NR 0.5128205128
1611            <NA>    NA not_TE_peak   LR_open           NA
1612            ERV1   163     TE_peak        NR 0.3240556660
1613             MIR     1     TE_peak        NR 0.0054347826
1614              L2    75     TE_peak   LR_open 0.6578947368
1615   Simple_repeat   228     TE_peak   LR_open 0.9230769231
1616              L2   424     TE_peak   LR_open 1.0000000000
1617            ERVL    83     TE_peak   LR_open 0.6335877863
1618             MIR   110     TE_peak        NR 0.6962025316
1619              L2    52     TE_peak        NR 0.3880597015
1620       ERVL-MaLR    65     TE_peak   LR_open 1.0000000000
1621       ERVL-MaLR    31     TE_peak   LR_open 0.4558823529
1622   Simple_repeat    61     TE_peak        NR 1.0000000000
1623   Simple_repeat    40     TE_peak        NR 1.0000000000
1624   Simple_repeat    74     TE_peak        NR 1.0000000000
1625            <NA>    NA not_TE_peak        NR           NA
1626             MIR    29     TE_peak        NR 0.2132352941
1627             MIR   192     TE_peak        NR 1.0000000000
1628             MIR    75     TE_peak        NR 1.0000000000
1629     hAT-Charlie   218     TE_peak        NR 1.0000000000
1630              L2    78     TE_peak        NR 0.5954198473
1631            tRNA    35     TE_peak   LR_open 1.0000000000
1632             MIR    50     TE_peak   LR_open 1.0000000000
1633             MIR    34     TE_peak   LR_open 1.0000000000
1634             MIR    69     TE_peak   LR_open 1.0000000000
1635     hAT-Charlie     9     TE_peak   LR_open 0.0450000000
1636             MIR    84     TE_peak  LR_close 0.5454545455
1637              L2   436     TE_peak        NR 0.8466019417
1638              L2   164     TE_peak        NR 1.0000000000
1639   Simple_repeat    50     TE_peak        NR 1.0000000000
1640            <NA>    NA not_TE_peak        NR           NA
1641             MIR    20     TE_peak        NR 0.1388888889
1642             MIR    36     TE_peak  LR_close 0.4500000000
1643              L2    48     TE_peak  LR_close 0.7164179104
1644     hAT-Charlie   171     TE_peak  LR_close 1.0000000000
1645             Alu   116     TE_peak  LR_close 0.3803278689
1646            <NA>    NA not_TE_peak        NR           NA
1647              L2    32     TE_peak        NR 0.3106796117
1648             MIR     1     TE_peak        NR 0.0057471264
1649             MIR   209     TE_peak        NR 1.0000000000
1650     hAT-Charlie   398     TE_peak        NR 1.0000000000
1651             Alu   256     TE_peak        NR 0.8258064516
1652            <NA>    NA not_TE_peak   LR_open           NA
1653              L2   119     TE_peak   LR_open 1.0000000000
1654              L2   119     TE_peak   LR_open 1.0000000000
1655              L2    44     TE_peak   LR_open 1.0000000000
1656   Simple_repeat    28     TE_peak   LR_open 1.0000000000
1657              L2    42     TE_peak        NR 0.0963302752
1658     hAT-Charlie    43     TE_peak        NR 0.2128712871
1659             MIR   228     TE_peak        NR 1.0000000000
1660             MIR    39     TE_peak        NR 0.3482142857
1661             MIR    78     TE_peak        NR 1.0000000000
1662              L2    55     TE_peak   LR_open 0.5789473684
1663             Alu    10     TE_peak        NR 0.0338983051
1664    TcMar-Tigger   140     TE_peak        NR 1.0000000000
1665             MIR    82     TE_peak        NR 0.5503355705
1666   hAT-Blackjack    99     TE_peak        NR 0.5129533679
1667             MIR    92     TE_peak        NR 0.3432835821
1668     hAT-Charlie   105     TE_peak        NR 1.0000000000
1669             MIR    40     TE_peak        NR 0.1869158879
1670     hAT-Charlie   112     TE_peak EAR_close 0.5833333333
1671             MIR    28     TE_peak        NR 0.3181818182
1672             MIR   170     TE_peak        NR 1.0000000000
1673             MIR    17     TE_peak        NR 0.0677290837
1674             MIR    78     TE_peak        NR 1.0000000000
1675   Simple_repeat     9     TE_peak        NR 1.0000000000
1676  Low_complexity    29     TE_peak        NR 1.0000000000
1677  Low_complexity    69     TE_peak        NR 1.0000000000
1678            <NA>    NA not_TE_peak   LR_open           NA
1679       ERVL-MaLR   193     TE_peak   LR_open 1.0000000000
1680             CR1    44     TE_peak   LR_open 0.1781376518
1681   Simple_repeat    59     TE_peak        NR 1.0000000000
1682   Simple_repeat    28     TE_peak        NR 1.0000000000
1683             MIR   211     TE_peak        NR 0.9504504505
1684            <NA>    NA not_TE_peak EAR_close           NA
1685       ERVL-MaLR     5     TE_peak   LR_open 0.0961538462
1686            <NA>    NA not_TE_peak  ESR_open           NA
1687              L2   219     TE_peak   LR_open 1.0000000000
1688              L2   130     TE_peak   LR_open 0.4100946372
1689             MIR   115     TE_peak        NR 1.0000000000
1690       ERVL-MaLR    32     TE_peak        NR 0.1022364217
1691             MIR    50     TE_peak EAR_close 0.4761904762
1692   Simple_repeat    26     TE_peak EAR_close 1.0000000000
1693              L1   313     TE_peak        NR 0.6427104723
1694    TcMar-Tigger   161     TE_peak        NR 0.7892156863
1695             MIR    68     TE_peak        NR 1.0000000000
1696             MIR   110     TE_peak   LR_open 0.3691275168
1697            ERV1   380     TE_peak        NR 0.7900207900
1698             MIR    95     TE_peak EAR_close 1.0000000000
1699   Simple_repeat    36     TE_peak        NR 1.0000000000
1700             MIR    89     TE_peak        NR 0.9780219780
1701             MIR    65     TE_peak EAR_close 1.0000000000
1702             MIR   199     TE_peak EAR_close 0.9754901961
1703   Simple_repeat    45     TE_peak EAR_close 1.0000000000
1704     hAT-Charlie     9     TE_peak        NR 0.0789473684
1705     hAT-Charlie    98     TE_peak        NR 1.0000000000
1706             Alu    63     TE_peak        NR 0.2032258065
1707   Simple_repeat    46     TE_peak        NR 1.0000000000
1708   Simple_repeat    69     TE_peak        NR 1.0000000000
1709   Simple_repeat    22     TE_peak        NR 1.0000000000
1710     hAT-Charlie   186     TE_peak   LR_open 1.0000000000
1711             CR1   148     TE_peak        NR 1.0000000000
1712             MIR    33     TE_peak        NR 0.5000000000
1713              L1   293     TE_peak   LR_open 0.8905775076
1714            <NA>    NA not_TE_peak        NR           NA
1715       ERVL-MaLR   473     TE_peak        NR 1.0000000000
1716       ERVL-MaLR    26     TE_peak        NR 0.1125541126
1717         Unknown   121     TE_peak        NR 1.0000000000
1718             MIR   177     TE_peak        NR 1.0000000000
1719              L2   291     TE_peak        NR 0.9122257053
1720            <NA>    NA not_TE_peak        NR           NA
1721            <NA>    NA not_TE_peak        NR           NA
1722     hAT-Charlie   189     TE_peak  LR_close 1.0000000000
1723            <NA>    NA not_TE_peak        NR           NA
1724            <NA>    NA not_TE_peak        NR           NA
1725       ERVL-MaLR   553     TE_peak   LR_open 0.9684763573
1726             MIR   207     TE_peak   LR_open 1.0000000000
1727            <NA>    NA not_TE_peak        NR           NA
1728         Unknown   178     TE_peak        NR 1.0000000000
1729             MIR    57     TE_peak        NR 0.2500000000
1730       ERVL-MaLR    74     TE_peak        NR 0.2090395480
1731             MIR    56     TE_peak        NR 1.0000000000
1732             MIR    89     TE_peak        NR 0.4659685864
1733     hAT-Charlie    94     TE_peak   LR_open 0.5662650602
1734             MIR   126     TE_peak   LR_open 1.0000000000
1735       ERVL-MaLR    51     TE_peak   LR_open 0.1108695652
1736       ERVL-MaLR   191     TE_peak        NR 0.4152173913
1737            <NA>    NA not_TE_peak ESR_close           NA
1738            <NA>    NA not_TE_peak        NR           NA
1739             CR1    98     TE_peak        NR 1.0000000000
1740            ERV1   357     TE_peak   LR_open 0.8439716312
1741              L1   130     TE_peak        NR 0.8965517241
1742             Alu    37     TE_peak  LR_close 0.1241610738
1743            ERVK   438     TE_peak        NR 0.4567257560
1744   Simple_repeat    32     TE_peak   not_mrc 1.0000000000
1745             MIR   153     TE_peak   not_mrc 1.0000000000
1746             DNA    78     TE_peak ESR_close 1.0000000000
1747   Simple_repeat    42     TE_peak ESR_close 1.0000000000
1748             MIR   114     TE_peak        NR 0.6705882353
1749             MIR   141     TE_peak  ESR_open 1.0000000000
1750   Simple_repeat    41     TE_peak    ESR_OC 1.0000000000
1751             MIR    69     TE_peak        NR 1.0000000000
1752             Alu    91     TE_peak        NR 0.7398373984
1753             Alu    42     TE_peak ESR_close 0.1354838710
1754             Alu   137     TE_peak   LR_open 0.4659863946
1755             MIR    66     TE_peak   LR_open 1.0000000000
1756  Low_complexity    40     TE_peak  LR_close 1.0000000000
1757     hAT-Charlie   164     TE_peak ESR_close 0.8078817734
1758             Alu   113     TE_peak        NR 0.3992932862
1759            <NA>    NA not_TE_peak        NR           NA
1760              L2   196     TE_peak        NR 1.0000000000
1761  Low_complexity    53     TE_peak        NR 1.0000000000
1762   Simple_repeat    52     TE_peak        NR 1.0000000000
1763   Simple_repeat    62     TE_peak        NR 1.0000000000
1764             MIR    17     TE_peak        NR 0.1307692308
1765              L2   406     TE_peak   LR_open 0.5734463277
1766              L2   182     TE_peak   LR_open 0.7647058824
1767            <NA>    NA not_TE_peak   LR_open           NA
1768             Alu    92     TE_peak  LR_close 0.3274021352
1769   Simple_repeat    21     TE_peak  LR_close 1.0000000000
1770             Alu    71     TE_peak        NR 0.5725806452
1771             Alu    63     TE_peak        NR 0.2210526316
1772   Simple_repeat    37     TE_peak        NR 1.0000000000
1773             Alu    29     TE_peak        NR 0.0989761092
1774            ERVL   104     TE_peak        NR 0.2246220302
1775       ERVL-MaLR   296     TE_peak        NR 0.8579710145
1776     hAT-Charlie    17     TE_peak   LR_open 0.4358974359
1777    TcMar-Tigger   272     TE_peak   LR_open 1.0000000000
1778             Alu   110     TE_peak   LR_open 0.7333333333
1779   Simple_repeat     8     TE_peak        NR 0.4705882353
1780              L2   113     TE_peak        NR 1.0000000000
1781  Low_complexity    59     TE_peak        NR 1.0000000000
1782   Simple_repeat    31     TE_peak        NR 1.0000000000
1783  Low_complexity    43     TE_peak        NR 1.0000000000
1784            <NA>    NA not_TE_peak        NR           NA
1785            <NA>    NA not_TE_peak        NR           NA
1786            ERV1   291     TE_peak   not_mrc 0.5215053763
1787       ERVL-MaLR   315     TE_peak        NR 0.9210526316
1788             Alu    51     TE_peak        NR 0.1655844156
1789              L2   126     TE_peak   LR_open 0.7411764706
1790             Alu    81     TE_peak   LR_open 1.0000000000
1791             Alu    84     TE_peak   LR_open 0.2709677419
1792             Alu     4     TE_peak        NR 0.0268456376
1793   Simple_repeat    74     TE_peak        NR 1.0000000000
1794            <NA>    NA not_TE_peak        NR           NA
1795             Alu    13     TE_peak        NR 0.0422077922
1796             Alu   241     TE_peak        NR 0.8033333333
1797             MIR    53     TE_peak  LR_close 1.0000000000
1798   Simple_repeat    44     TE_peak  LR_close 1.0000000000
1799   Simple_repeat     4     TE_peak   LR_open 0.1538461538
1800              L2   101     TE_peak  LR_close 0.5674157303
1801     hAT-Charlie    71     TE_peak  LR_close 1.0000000000
1802             Alu    23     TE_peak  LR_close 0.0795847751
1803            <NA>    NA not_TE_peak        NR           NA
1804             Alu    50     TE_peak  LR_close 0.3205128205
1805            <NA>    NA not_TE_peak        NR           NA
1806            <NA>    NA not_TE_peak        NR           NA
1807            <NA>    NA not_TE_peak        NR           NA
1808             MIR   200     TE_peak        NR 1.0000000000
1809             MIR    48     TE_peak        NR 0.3310344828
1810             Alu    44     TE_peak        NR 0.1433224756
1811   Simple_repeat    23     TE_peak        NR 1.0000000000
1812   Simple_repeat    25     TE_peak        NR 1.0000000000
1813            <NA>    NA not_TE_peak EAR_close           NA
1814     hAT-Charlie    71     TE_peak   LR_open 1.0000000000
1815             Alu    27     TE_peak   LR_open 0.1560693642
1816            <NA>    NA not_TE_peak        NR           NA
1817            ERVL   434     TE_peak   LR_open 0.7654320988
1818             Alu   160     TE_peak   LR_open 0.5755395683
1819             Alu   106     TE_peak   LR_open 0.8983050847
1820            ERV1   215     TE_peak   LR_open 1.0000000000
1821             Alu    22     TE_peak        NR 0.0664652568
1822             Alu    44     TE_peak   LR_open 0.3308270677
1823            ERV1   253     TE_peak   LR_open 1.0000000000
1824             Alu    86     TE_peak   LR_open 0.2895622896
1825             MIR    95     TE_peak   LR_open 1.0000000000
1826              L1    30     TE_peak   LR_open 0.1851851852
1827            <NA>    NA not_TE_peak        NR           NA
1828             MIR    61     TE_peak        NR 1.0000000000
1829              L2   117     TE_peak        NR 0.2984693878
1830              L2   144     TE_peak        NR 0.3673469388
1831              L2    62     TE_peak        NR 1.0000000000
1832             Alu    74     TE_peak  LR_close 0.2551724138
1833              L2   130     TE_peak  LR_close 0.8227848101
1834             MIR   111     TE_peak        NR 1.0000000000
1835   Simple_repeat    22     TE_peak        NR 1.0000000000
1836             Alu   296     TE_peak        NR 0.9610389610
1837             Alu    81     TE_peak        NR 1.0000000000
1838              L2   189     TE_peak        NR 0.8750000000
1839   Simple_repeat    19     TE_peak        NR 1.0000000000
1840   Simple_repeat    34     TE_peak        NR 1.0000000000
1841   Simple_repeat    60     TE_peak        NR 1.0000000000
1842   Simple_repeat    48     TE_peak        NR 1.0000000000
1843   Simple_repeat    40     TE_peak        NR 1.0000000000
1844            <NA>    NA not_TE_peak  EAR_open           NA
1845             Alu    98     TE_peak        NR 0.3223684211
1846             Alu   133     TE_peak        NR 1.0000000000
1847   Simple_repeat    98     TE_peak        NR 1.0000000000
1848             Alu    99     TE_peak        NR 1.0000000000
1849            <NA>    NA not_TE_peak        NR           NA
1850             Alu    44     TE_peak  LR_close 0.1506849315
1851              L1   277     TE_peak  LR_close 0.8602484472
1852             Alu   195     TE_peak   LR_open 0.8478260870
1853             Alu   289     TE_peak   LR_open 1.0000000000
1854            <NA>    NA not_TE_peak   not_mrc           NA
1855             Alu    44     TE_peak   LR_open 0.1496598639
1856             Alu   111     TE_peak        NR 0.3712374582
1857             MIR    71     TE_peak        NR 1.0000000000
1858            <NA>    NA not_TE_peak        NR           NA
1859            <NA>    NA not_TE_peak ESR_close           NA
1860       ERVL-MaLR   156     TE_peak        NR 1.0000000000
1861       ERVL-MaLR   155     TE_peak        NR 1.0000000000
1862              L1    65     TE_peak        NR 0.7738095238
1863     hAT-Charlie   230     TE_peak  EAR_open 0.7744107744
1864              L2   121     TE_peak        NR 0.5238095238
1865             MIR   220     TE_peak        NR 1.0000000000
1866             MIR    33     TE_peak        NR 0.1208791209
1867            <NA>    NA not_TE_peak ESR_close           NA
1868              L2    75     TE_peak  LR_close 1.0000000000
1869              L2   102     TE_peak  LR_close 1.0000000000
1870             MIR    69     TE_peak  LR_close 0.7666666667
1871              L2    64     TE_peak        NR 0.2857142857
1872             MIR   185     TE_peak ESR_close 1.0000000000
1873             MIR    97     TE_peak ESR_close 1.0000000000
1874              L2    92     TE_peak ESR_close 0.6865671642
1875   Simple_repeat    29     TE_peak        NR 1.0000000000
1876             CR1    98     TE_peak        NR 1.0000000000
1877  Low_complexity    36     TE_peak ESR_close 1.0000000000
1878  Low_complexity    49     TE_peak ESR_close 1.0000000000
1879             MIR    67     TE_peak ESR_close 1.0000000000
1880             MIR    97     TE_peak        NR 1.0000000000
1881            ERVL   217     TE_peak   LR_open 1.0000000000
1882             Alu    88     TE_peak   LR_open 0.2838709677
1883   Simple_repeat    32     TE_peak        NR 1.0000000000
1884             MIR   109     TE_peak  ESR_open 1.0000000000
1885             Alu   197     TE_peak  ESR_open 0.6961130742
1886             MIR   108     TE_peak ESR_close 1.0000000000
1887             MIR   124     TE_peak        NR 1.0000000000
1888             MIR   101     TE_peak        NR 1.0000000000
1889             MIR    49     TE_peak        NR 0.3951612903
1890  Low_complexity    57     TE_peak        NR 1.0000000000
1891   Simple_repeat    39     TE_peak        NR 1.0000000000
1892   Simple_repeat    16     TE_peak        NR 1.0000000000
1893  Low_complexity    49     TE_peak        NR 1.0000000000
1894             MIR    77     TE_peak        NR 1.0000000000
1895  Low_complexity    12     TE_peak   LR_open 0.3870967742
1896      hAT-Tip100   155     TE_peak  LR_close 1.0000000000
1897      hAT-Tip100    91     TE_peak  LR_close 1.0000000000
1898             MIR   119     TE_peak  LR_close 0.9596774194
1899     hAT-Charlie    70     TE_peak        NR 1.0000000000
1900             Alu   120     TE_peak        NR 0.3658536585
1901             MIR   176     TE_peak        NR 0.8421052632
1902              L2    91     TE_peak        NR 1.0000000000
1903            <NA>    NA not_TE_peak        NR           NA
1904              L2   372     TE_peak        NR 0.9920000000
1905             Alu    53     TE_peak  LR_close 0.2078431373
1906   Simple_repeat    23     TE_peak  LR_close 1.0000000000
1907   Simple_repeat   143     TE_peak  LR_close 1.0000000000
1908             MIR    87     TE_peak ESR_close 1.0000000000
1909             MIR   116     TE_peak  ESR_open 1.0000000000
1910             MIR    74     TE_peak   LR_open 0.6666666667
1911              L2    96     TE_peak   LR_open 1.0000000000
1912             Alu   109     TE_peak        NR 0.8384615385
1913   Simple_repeat    44     TE_peak ESR_close 1.0000000000
1914   Simple_repeat    24     TE_peak ESR_close 1.0000000000
1915             MIR    32     TE_peak        NR 0.2580645161
1916             MIR   182     TE_peak        NR 1.0000000000
1917             MIR    66     TE_peak        NR 1.0000000000
1918             MIR    37     TE_peak   LR_open 0.2569444444
1919    TcMar-Tigger    83     TE_peak   LR_open 1.0000000000
1920  Low_complexity    54     TE_peak  ESR_open 1.0000000000
1921            <NA>    NA not_TE_peak   LR_open           NA
1922   Simple_repeat    71     TE_peak        NR 1.0000000000
1923              L2   163     TE_peak        NR 0.6680327869
1924             MIR   137     TE_peak        NR 1.0000000000
1925   Simple_repeat    51     TE_peak        NR 1.0000000000
1926             Alu   174     TE_peak        NR 1.0000000000
1927             Alu     1     TE_peak        NR 0.0036496350
1928             MIR    69     TE_peak   LR_open 1.0000000000
1929             MIR     2     TE_peak   LR_open 0.0094339623
1930            <NA>    NA not_TE_peak        NR           NA
1931              L2    56     TE_peak        NR 0.5283018868
1932   Simple_repeat    57     TE_peak        NR 1.0000000000
1933   Simple_repeat    56     TE_peak        NR 1.0000000000
1934             MIR   163     TE_peak        NR 0.8956043956
1935            <NA>    NA not_TE_peak        NR           NA
1936             MIR   104     TE_peak  ESR_open 0.8000000000
1937            <NA>    NA not_TE_peak ESR_close           NA
1938             MIR    41     TE_peak ESR_close 0.2697368421
1939             CR1    72     TE_peak        NR 1.0000000000
1940             Alu    73     TE_peak        NR 0.2433333333
1941             MIR    88     TE_peak  LR_close 1.0000000000
1942             MIR    74     TE_peak  LR_close 1.0000000000
1943   Simple_repeat    33     TE_peak  LR_close 1.0000000000
1944             MIR    20     TE_peak  LR_close 0.1769911504
1945             MIR   141     TE_peak        NR 0.8980891720
1946            <NA>    NA not_TE_peak        NR           NA
1947   Simple_repeat    36     TE_peak        NR 1.0000000000
1948             Alu   275     TE_peak        NR 0.8785942492
1949             Alu    68     TE_peak        NR 1.0000000000
1950       ERVL-MaLR    69     TE_peak        NR 0.3898305085
1951             Alu    82     TE_peak        NR 1.0000000000
1952     hAT-Charlie   108     TE_peak        NR 1.0000000000
1953             Alu   309     TE_peak        NR 1.0000000000
1954             Alu     2     TE_peak        NR 0.0066889632
1955             Alu   187     TE_peak   LR_open 0.6032258065
1956            <NA>    NA not_TE_peak   LR_open           NA
1957   Simple_repeat    27     TE_peak        NR 1.0000000000
1958   Simple_repeat    64     TE_peak        NR 1.0000000000
1959             MIR   104     TE_peak        NR 0.5842696629
1960            <NA>    NA not_TE_peak        NR           NA
1961             Alu   254     TE_peak   LR_open 0.8552188552
1962            <NA>    NA not_TE_peak        NR           NA
1963            <NA>    NA not_TE_peak ESR_close           NA
1964            <NA>    NA not_TE_peak   LR_open           NA
1965       ERVL-MaLR   144     TE_peak  LR_close 0.6760563380
1966              L1   236     TE_peak   LR_open 0.9328063241
1967             Alu   113     TE_peak   LR_open 0.3729372937
1968   Simple_repeat    39     TE_peak  EAR_open 1.0000000000
1969              L2   159     TE_peak   LR_open 0.8412698413
1970             Alu   246     TE_peak        NR 0.7987012987
1971       ERVL-MaLR   420     TE_peak        NR 0.9567198178
1972             Alu   166     TE_peak        NR 0.5949820789
1973            <NA>    NA not_TE_peak        NR           NA
1974            <NA>    NA not_TE_peak  ESR_open           NA
1975             Alu   106     TE_peak   LR_open 0.5760869565
1976             Alu    13     TE_peak   LR_open 0.3823529412
1977             MIR    72     TE_peak        NR 1.0000000000
1978   Simple_repeat    68     TE_peak        NR 1.0000000000
1979            ERVL    11     TE_peak        NR 0.0733333333
1980      hAT-Tip100    72     TE_peak        NR 1.0000000000
1981           snRNA   164     TE_peak        NR 1.0000000000
1982     hAT-Charlie   138     TE_peak        NR 1.0000000000
1983            tRNA    72     TE_peak ESR_close 1.0000000000
1984            <NA>    NA not_TE_peak   LR_open           NA
1985   Simple_repeat    54     TE_peak        NR 1.0000000000
1986   Simple_repeat    32     TE_peak        NR 1.0000000000
1987             Alu   262     TE_peak        NR 0.8704318937
1988      hAT-Tip100   138     TE_peak        NR 1.0000000000
1989             MIR    95     TE_peak        NR 0.4398148148
1990            <NA>    NA not_TE_peak        NR           NA
1991            <NA>    NA not_TE_peak  ESR_open           NA
1992     hAT-Charlie   197     TE_peak        NR 1.0000000000
1993            tRNA    72     TE_peak EAR_close 1.0000000000
1994             MIR    52     TE_peak        NR 1.0000000000
1995            <NA>    NA not_TE_peak ESR_close           NA
1996            <NA>    NA not_TE_peak        NR           NA
1997            tRNA    28     TE_peak  LR_close 0.3835616438
1998            tRNA    74     TE_peak EAR_close 1.0000000000
1999        RTE-BovB     6     TE_peak        NR 0.0582524272
2000   hAT-Blackjack    10     TE_peak        NR 0.0520833333
2001            tRNA    72     TE_peak   not_mrc 1.0000000000
2002            tRNA    75     TE_peak        NR 1.0000000000
2003     hAT-Charlie   126     TE_peak        NR 1.0000000000
2004           snRNA   164     TE_peak        NR 1.0000000000
2005      hAT-Tip100    64     TE_peak        NR 1.0000000000
2006            ERVL   164     TE_peak        NR 1.0000000000
2007            ERV1   158     TE_peak  EAR_open 0.4744744745
2008             Alu   264     TE_peak  EAR_open 0.9263157895
2009     hAT-Charlie   115     TE_peak ESR_close 1.0000000000
2010            ERV1   100     TE_peak ESR_close 0.2538071066
2011   Simple_repeat    33     TE_peak ESR_close 1.0000000000
2012             MIR   146     TE_peak ESR_close 1.0000000000
2013            <NA>    NA not_TE_peak  LR_close           NA
2014            <NA>    NA not_TE_peak   LR_open           NA
2015            <NA>    NA not_TE_peak        NR           NA
2016             MIR   117     TE_peak        NR 0.5342465753
2017      hAT-Tip100   123     TE_peak        NR 1.0000000000
2018             Alu   154     TE_peak        NR 0.5220338983
2019   Simple_repeat    60     TE_peak        NR 1.0000000000
2020   Simple_repeat    60     TE_peak        NR 1.0000000000
2021             MIR    47     TE_peak  LR_close 1.0000000000
2022             Alu    61     TE_peak  LR_close 0.1993464052
2023             MIR    19     TE_peak ESR_close 0.2533333333
2024       ERVL-MaLR   316     TE_peak        NR 0.9844236760
2025            <NA>    NA not_TE_peak        NR           NA
2026             Alu    38     TE_peak        NR 0.1245901639
2027             MIR    68     TE_peak        NR 1.0000000000
2028             MIR   194     TE_peak        NR 1.0000000000
2029   Simple_repeat    38     TE_peak        NR 1.0000000000
2030             MIR   173     TE_peak        NR 1.0000000000
2031             Alu    83     TE_peak        NR 0.4940476190
2032            <NA>    NA not_TE_peak        NR           NA
2033            <NA>    NA not_TE_peak        NR           NA
2034             MIR   123     TE_peak        NR 0.6150000000
2035             Alu   254     TE_peak        NR 0.8523489933
2036             MIR   159     TE_peak  LR_close 0.9814814815
2037   Simple_repeat    31     TE_peak ESR_close 0.8857142857
2038              L2   131     TE_peak ESR_close 1.0000000000
2039   hAT-Blackjack    95     TE_peak ESR_close 0.7421875000
2040             Alu    60     TE_peak   LR_open 0.2013422819
2041             MIR   106     TE_peak  LR_close 1.0000000000
2042             MIR   107     TE_peak  LR_close 1.0000000000
2043             Alu    46     TE_peak  LR_close 0.1543624161
2044     hAT-Charlie    58     TE_peak        NR 0.2944162437
2045            <NA>    NA not_TE_peak  LR_close           NA
2046            <NA>    NA not_TE_peak ESR_close           NA
2047            <NA>    NA not_TE_peak        NR           NA
2048             MIR   127     TE_peak        NR 1.0000000000
2049             MIR   213     TE_peak        NR 1.0000000000
2050              L2    27     TE_peak        NR 0.1901408451
2051   Simple_repeat    41     TE_peak        NR 1.0000000000
2052             Alu    63     TE_peak        NR 0.2121212121
2053            ERV1   434     TE_peak        NR 1.0000000000
2054             Alu   160     TE_peak        NR 0.5387205387
2055            ERV1   342     TE_peak        NR 0.9688385269
2056   Simple_repeat   523     TE_peak        NR 0.9491833031
2057            ERV1   686     TE_peak  LR_close 1.0000000000
2058            ERV1   151     TE_peak  LR_close 0.2972440945
2059            <NA>    NA not_TE_peak        NR           NA
2060             MIR    20     TE_peak   LR_open 0.2020202020
2061              L1   215     TE_peak  LR_close 0.5295566502
2062            <NA>    NA not_TE_peak        NR           NA
2063     hAT-Charlie    84     TE_peak        NR 0.7118644068
2064            ERV1   290     TE_peak        NR 1.0000000000
2065             Alu    54     TE_peak        NR 0.1806020067
2066             MIR   126     TE_peak        NR 1.0000000000
2067             MIR   148     TE_peak        NR 1.0000000000
2068            <NA>    NA not_TE_peak        NR           NA
2069            <NA>    NA not_TE_peak        NR           NA
2070             CR1   145     TE_peak ESR_close 1.0000000000
2071             MIR    74     TE_peak ESR_close 1.0000000000
2072            ERV1   398     TE_peak ESR_close 1.0000000000
2073             MIR    20     TE_peak ESR_close 0.1818181818
2074              L2    88     TE_peak        NR 0.4656084656
2075             MIR   112     TE_peak        NR 1.0000000000
2076              L2    10     TE_peak        NR 0.1075268817
2077              L2    73     TE_peak EAR_close 1.0000000000
2078             MIR    71     TE_peak        NR 1.0000000000
2079              L2    46     TE_peak        NR 1.0000000000
2080            <NA>    NA not_TE_peak        NR           NA
2081            <NA>    NA not_TE_peak        NR           NA
2082            <NA>    NA not_TE_peak        NR           NA
2083             MIR    67     TE_peak   LR_open 0.4294871795
2084             Alu   193     TE_peak        NR 0.6369636964
2085            ERVL   218     TE_peak        NR 0.9954337900
2086              L2    28     TE_peak        NR 0.3373493976
2087            ERV1    62     TE_peak        NR 1.0000000000
2088             MIR    55     TE_peak        NR 1.0000000000
2089            <NA>    NA not_TE_peak  LR_close           NA
2090            <NA>    NA not_TE_peak  ESR_open           NA
2091   Simple_repeat    82     TE_peak        NR 1.0000000000
2092   Simple_repeat    22     TE_peak        NR 1.0000000000
2093              L2   105     TE_peak  ESR_open 1.0000000000
2094             MIR    75     TE_peak  ESR_open 1.0000000000
2095     hAT-Charlie    41     TE_peak  ESR_open 1.0000000000
2096             Alu     9     TE_peak  ESR_open 0.0612244898
2097             MIR    69     TE_peak        NR 0.5609756098
2098             Alu   190     TE_peak EAR_close 0.9004739336
2099              L1   260     TE_peak EAR_close 0.7784431138
2100             Alu   119     TE_peak        NR 0.3953488372
2101             Alu    40     TE_peak        NR 0.2051282051
2102             Alu    54     TE_peak        NR 0.3776223776
2103              L2   385     TE_peak        NR 0.8369565217
2104              L2    83     TE_peak   LR_open 1.0000000000
2105              L2    73     TE_peak   LR_open 1.0000000000
2106             MIR   164     TE_peak   LR_open 0.9820359281
2107             Alu    28     TE_peak        NR 0.0906148867
2108             MIR   117     TE_peak        NR 1.0000000000
2109       ERVL-MaLR    23     TE_peak        NR 0.0603674541
2110            <NA>    NA not_TE_peak        NR           NA
2111            <NA>    NA not_TE_peak  LR_close           NA
2112            <NA>    NA not_TE_peak        NR           NA
2113              L2    91     TE_peak   LR_open 1.0000000000
2114              L2    49     TE_peak   LR_open 1.0000000000
2115              L2   149     TE_peak   LR_open 1.0000000000
2116             MIR   188     TE_peak   LR_open 1.0000000000
2117   Simple_repeat    57     TE_peak        NR 1.0000000000
2118              L2    43     TE_peak   LR_open 1.0000000000
2119              L2    44     TE_peak   LR_open 1.0000000000
2120             MIR    27     TE_peak        NR 0.1428571429
2121              L2   114     TE_peak        NR 1.0000000000
2122             MIR    74     TE_peak ESR_close 1.0000000000
2123  Low_complexity    36     TE_peak ESR_close 1.0000000000
2124             MIR   135     TE_peak ESR_close 1.0000000000
2125             MIR    37     TE_peak ESR_close 0.5441176471
2126             MIR    40     TE_peak EAR_close 0.1990049751
2127             MIR    83     TE_peak EAR_close 0.7033898305
2128   Simple_repeat    26     TE_peak        NR 1.0000000000
2129   Simple_repeat    29     TE_peak        NR 1.0000000000
2130             MIR   169     TE_peak        NR 0.9184782609
2131              L2   201     TE_peak   LR_open 0.1431623932
2132            <NA>    NA not_TE_peak        NR           NA
2133             MIR    35     TE_peak  LR_close 0.2713178295
2134             MIR   204     TE_peak ESR_close 0.8644067797
2135            <NA>    NA not_TE_peak        NR           NA
2136             MIR    75     TE_peak        NR 1.0000000000
2137             MIR   113     TE_peak        NR 1.0000000000
2138             Alu    47     TE_peak        NR 0.1506410256
2139             MIR    73     TE_peak        NR 0.3173913043
2140             Alu    30     TE_peak        NR 0.1027397260
2141   Simple_repeat    40     TE_peak        NR 0.5263157895
2142   hAT-Blackjack   199     TE_peak        NR 1.0000000000
2143   Simple_repeat     8     TE_peak        NR 0.0243902439
2144             MIR    58     TE_peak ESR_close 0.2735849057
2145   Simple_repeat    31     TE_peak ESR_close 1.0000000000
2146            <NA>    NA not_TE_peak        NR           NA
2147             Alu     7     TE_peak   not_mrc 0.0226537217
2148             MIR   160     TE_peak        NR 1.0000000000
2149             MIR    87     TE_peak        NR 1.0000000000
2150             MIR   195     TE_peak        NR 1.0000000000
2151             MIR    43     TE_peak        NR 0.2654320988
2152            ERVL   233     TE_peak        NR 0.4283088235
2153            <NA>    NA not_TE_peak  EAR_open           NA
2154             MIR    23     TE_peak ESR_close 1.0000000000
2155   hAT-Blackjack   113     TE_peak ESR_close 1.0000000000
2156             MIR   100     TE_peak ESR_close 1.0000000000
2157             MIR    51     TE_peak ESR_close 0.3311688312
2158              L2   234     TE_peak        NR 0.7312500000
2159             MIR   170     TE_peak  ESR_open 1.0000000000
2160             MIR   137     TE_peak  ESR_open 1.0000000000
2161              L2   147     TE_peak        NR 0.7860962567
2162              L2   194     TE_peak ESR_close 0.2298578199
2163            ERVL   140     TE_peak        NR 1.0000000000
2164       ERVL-MaLR    96     TE_peak   LR_open 0.5106382979
2165             MIR    74     TE_peak   LR_open 1.0000000000
2166            ERVL   107     TE_peak ESR_close 0.0951111111
2167             MIR   152     TE_peak   LR_open 1.0000000000
2168              L2   143     TE_peak ESR_close 0.6383928571
2169             Alu   126     TE_peak ESR_close 0.4666666667
2170  Low_complexity    29     TE_peak        NR 0.7837837838
2171             MIR    18     TE_peak        NR 0.0942408377
2172            <NA>    NA not_TE_peak ESR_close           NA
2173             MIR   146     TE_peak   LR_open 0.8066298343
2174             MIR    38     TE_peak        NR 0.2289156627
2175             CR1    75     TE_peak        NR 1.0000000000
2176             MIR   172     TE_peak        NR 1.0000000000
2177       ERVL-MaLR   122     TE_peak  LR_close 1.0000000000
2178       ERVL-MaLR   249     TE_peak  LR_close 0.9188191882
2179             MIR   124     TE_peak        NR 0.7898089172
2180   Simple_repeat    35     TE_peak        NR 1.0000000000
2181   Simple_repeat     8     TE_peak        NR 1.0000000000
2182              L2   104     TE_peak        NR 1.0000000000
2183       ERVL-MaLR   232     TE_peak        NR 0.3993115318
2184     hAT-Charlie    71     TE_peak  LR_close 0.3641025641
2185        Helitron   125     TE_peak  LR_close 1.0000000000
2186            ERVL   483     TE_peak  LR_close 0.9698795181
2187     hAT-Charlie   186     TE_peak        NR 0.6138613861
2188            ERV1   145     TE_peak        NR 0.7837837838
2189             Alu    29     TE_peak        NR 0.0917721519
2190              L2    75     TE_peak        NR 0.6756756757
2191             MIR   164     TE_peak  LR_close 1.0000000000
2192              L2    97     TE_peak  LR_close 1.0000000000
2193              L2   184     TE_peak  LR_close 1.0000000000
2194             MIR   131     TE_peak        NR 0.6421568627
2195             MIR   155     TE_peak        NR 1.0000000000
2196              L2   206     TE_peak   LR_open 0.3864915572
2197              L2   281     TE_peak   LR_open 0.6853658537
2198            <NA>    NA not_TE_peak        NR           NA
2199   Simple_repeat    24     TE_peak        NR 0.2790697674
2200   Simple_repeat   107     TE_peak        NR 1.0000000000
2201            <NA>    NA not_TE_peak        NR           NA
2202             MIR   100     TE_peak   LR_open 1.0000000000
2203             MIR    95     TE_peak        NR 1.0000000000
2204            <NA>    NA not_TE_peak   not_mrc           NA
2205             MIR   209     TE_peak        NR 0.8393574297
2206              L2    21     TE_peak        NR 0.1615384615
2207   Simple_repeat    40     TE_peak EAR_close 1.0000000000
2208             MIR    76     TE_peak        NR 0.3568075117
2209       ERVL-MaLR   158     TE_peak        NR 0.4425770308
2210     hAT-Charlie   149     TE_peak        NR 1.0000000000
2211              L2    14     TE_peak        NR 0.0163934426
2212              L2   113     TE_peak  LR_close 0.1554332875
2213            <NA>    NA not_TE_peak   not_mrc           NA
2214            <NA>    NA not_TE_peak   LR_open           NA
2215            <NA>    NA not_TE_peak        NR           NA
2216             MIR   137     TE_peak        NR 0.6555023923
2217             MIR   131     TE_peak        NR 1.0000000000
2218             MIR    30     TE_peak        NR 0.2013422819
2219  Low_complexity   265     TE_peak        NR 0.5086372361
2220            ERVL   415     TE_peak EAR_close 0.7586837294
2221            ERV1     2     TE_peak        NR 0.0078740157
2222            ERV1   209     TE_peak        NR 0.3096296296
2223             Alu    38     TE_peak ESR_close 0.1254125413
2224            ERVL   332     TE_peak ESR_close 0.5981981982
2225            <NA>    NA not_TE_peak        NR           NA
2226              L2   115     TE_peak        NR 0.6052631579
2227             MIR    46     TE_peak  LR_close 0.3622047244
2228     hAT-Charlie    65     TE_peak        NR 1.0000000000
2229   Simple_repeat    43     TE_peak        NR 1.0000000000
2230             Alu    32     TE_peak        NR 0.1126760563
2231             MIR   206     TE_peak        NR 0.6477987421
2232              L1   199     TE_peak        NR 1.0000000000
2233              L2    58     TE_peak        NR 0.4202898551
2234             MIR   101     TE_peak        NR 1.0000000000
2235             MIR    29     TE_peak        NR 0.2000000000
2236             MIR    29     TE_peak        NR 0.1239316239
2237              L1   540     TE_peak        NR 1.0000000000
2238  Low_complexity    29     TE_peak   LR_open 1.0000000000
2239   Simple_repeat    23     TE_peak        NR 0.6969696970
2240            <NA>    NA not_TE_peak   LR_open           NA
2241   Simple_repeat    40     TE_peak  LR_close 1.0000000000
2242            <NA>    NA not_TE_peak        NR           NA
2243            <NA>    NA not_TE_peak        NR           NA
2244            <NA>    NA not_TE_peak        NR           NA
2245   Simple_repeat     3     TE_peak        NR 0.0566037736
2246              L2    55     TE_peak        NR 0.1622418879
2247             CR1   127     TE_peak        NR 1.0000000000
2248   Simple_repeat   315     TE_peak        NR 0.9662576687
2249             MIR    13     TE_peak        NR 0.1625000000
2250             MIR   175     TE_peak        NR 1.0000000000
2251             MIR   196     TE_peak        NR 1.0000000000
2252              L2   138     TE_peak        NR 1.0000000000
2253              L2   128     TE_peak        NR 0.5203252033
2254   Simple_repeat    22     TE_peak        NR 1.0000000000
2255            <NA>    NA not_TE_peak        NR           NA
2256             MIR   195     TE_peak   LR_open 1.0000000000
2257             MIR    93     TE_peak   LR_open 0.5081967213
2258            ERVL    44     TE_peak        NR 0.1781376518
2259            <NA>    NA not_TE_peak  LR_close           NA
2260             MIR     4     TE_peak        NR 0.0183486239
2261            <NA>    NA not_TE_peak  LR_close           NA
2262             MIR    70     TE_peak ESR_close 0.3181818182
2263             MIR   118     TE_peak ESR_close 0.9593495935
2264   Simple_repeat    29     TE_peak        NR 0.7435897436
2265             MIR    81     TE_peak ESR_close 0.9204545455
2266              L2    65     TE_peak        NR 1.0000000000
2267             MIR    99     TE_peak        NR 1.0000000000
2268              L2   149     TE_peak ESR_close 1.0000000000
2269              L2   206     TE_peak        NR 1.0000000000
2270   Simple_repeat    67     TE_peak        NR 1.0000000000
2271             MIR    68     TE_peak        NR 0.4331210191
2272            <NA>    NA not_TE_peak        NR           NA
2273             MIR    58     TE_peak        NR 0.2857142857
2274   Simple_repeat    57     TE_peak        NR 1.0000000000
2275   Simple_repeat    72     TE_peak        NR 1.0000000000
2276   Simple_repeat    87     TE_peak        NR 1.0000000000
2277   Simple_repeat    72     TE_peak        NR 1.0000000000
2278             MIR   207     TE_peak        NR 1.0000000000
2279              L1    69     TE_peak        NR 0.3538461538
2280              L1    13     TE_peak   LR_open 0.0156438026
2281     hAT-Charlie    51     TE_peak  LR_close 0.4112903226
2282              L2    51     TE_peak  LR_close 1.0000000000
2283       ERVL-MaLR   113     TE_peak  LR_close 0.3130193906
2284             MIR   103     TE_peak   LR_open 0.6732026144
2285          Gypsy?   269     TE_peak   LR_open 0.8053892216
2286             MIR   101     TE_peak   LR_open 0.6644736842
2287            <NA>    NA not_TE_peak        NR           NA
2288       ERVL-MaLR   179     TE_peak  EAR_open 0.4124423963
2289      hAT-Tip100    48     TE_peak  EAR_open 0.2962962963
2290             MIR   209     TE_peak  EAR_open 1.0000000000
2291             CR1   316     TE_peak  EAR_open 0.9844236760
2292             Alu   244     TE_peak        NR 0.7896440129
2293              L1    90     TE_peak        NR 1.0000000000
2294             Alu    66     TE_peak        NR 0.2115384615
2295              L2   277     TE_peak        NR 1.0000000000
2296            <NA>    NA not_TE_peak        NR           NA
2297              L2    69     TE_peak        NR 1.0000000000
2298             hAT    44     TE_peak        NR 0.5000000000
2299            <NA>    NA not_TE_peak        NR           NA
2300             MIR    50     TE_peak   LR_open 0.4000000000
2301            <NA>    NA not_TE_peak EAR_close           NA
2302             MIR   123     TE_peak   LR_open 0.6577540107
2303   Simple_repeat    26     TE_peak        NR 1.0000000000
2304            <NA>    NA not_TE_peak   LR_open           NA
2305            <NA>    NA not_TE_peak        NR           NA
2306            <NA>    NA not_TE_peak        NR           NA
2307            <NA>    NA not_TE_peak        NR           NA
2308            <NA>    NA not_TE_peak  ESR_open           NA
2309            <NA>    NA not_TE_peak        NR           NA
2310            <NA>    NA not_TE_peak   LR_open           NA
2311            <NA>    NA not_TE_peak   LR_open           NA
2312   Simple_repeat    19     TE_peak   not_mrc 1.0000000000
2313             Alu   115     TE_peak   not_mrc 0.4440154440
2314              L2   181     TE_peak        NR 0.9187817259
2315             Alu    29     TE_peak  LR_close 0.0989761092
2316             Alu   135     TE_peak        NR 0.4720279720
2317   Simple_repeat    68     TE_peak  EAR_open 1.0000000000
2318            <NA>    NA not_TE_peak   LR_open           NA
2319     hAT-Charlie   282     TE_peak        NR 1.0000000000
2320             Alu   156     TE_peak        NR 0.5270270270
2321      hAT-Tip100   130     TE_peak        NR 1.0000000000
2322             Alu    61     TE_peak        NR 1.0000000000
2323             Alu    95     TE_peak        NR 0.3104575163
2324            <NA>    NA not_TE_peak  ESR_open           NA
2325            <NA>    NA not_TE_peak   LR_open           NA
2326            <NA>    NA not_TE_peak   LR_open           NA
2327              L1    63     TE_peak        NR 1.0000000000
2328             Alu   103     TE_peak        NR 0.7357142857
2329   Simple_repeat    31     TE_peak        NR 1.0000000000
2330             MIR   116     TE_peak        NR 1.0000000000
2331              L1   158     TE_peak        NR 0.5302013423
2332            <NA>    NA not_TE_peak        NR           NA
2333            <NA>    NA not_TE_peak        NR           NA
2334             MIR   106     TE_peak  ESR_open 1.0000000000
2335            <NA>    NA not_TE_peak ESR_close           NA
2336            <NA>    NA not_TE_peak        NR           NA
2337             MIR   159     TE_peak  LR_close 1.0000000000
2338              L2   211     TE_peak  LR_close 0.6452599388
2339   Simple_repeat    34     TE_peak ESR_close 1.0000000000
2340             MIR   118     TE_peak ESR_close 0.7468354430
2341            <NA>    NA not_TE_peak        NR           NA
2342            <NA>    NA not_TE_peak  LR_close           NA
2343             MIR    46     TE_peak   LR_open 0.2613636364
2344             MIR    58     TE_peak   LR_open 0.3625000000
2345    TcMar-Tigger   276     TE_peak   LR_open 0.5287356322
2346             Alu    18     TE_peak        NR 0.0640569395
2347            <NA>    NA not_TE_peak  LR_close           NA
2348            <NA>    NA not_TE_peak   LR_open           NA
2349             Alu    47     TE_peak        NR 0.1593220339
2350            <NA>    NA not_TE_peak   LR_open           NA
2351   Simple_repeat    30     TE_peak EAR_close 1.0000000000
2352     hAT-Charlie   213     TE_peak        NR 0.9025423729
2353   Simple_repeat    44     TE_peak        NR 1.0000000000
2354             Alu    42     TE_peak        NR 0.1757322176
2355             Alu    32     TE_peak        NR 0.1056105611
2356   Simple_repeat    20     TE_peak        NR 1.0000000000
2357   Simple_repeat   119     TE_peak        NR 1.0000000000
2358   Simple_repeat    47     TE_peak        NR 1.0000000000
2359              L2    86     TE_peak        NR 0.5972222222
2360             Alu   110     TE_peak   LR_open 0.3846153846
2361            ERV1   534     TE_peak   LR_open 0.9286956522
2362     hAT-Charlie   147     TE_peak        NR 0.9187500000
2363            <NA>    NA not_TE_peak        NR           NA
2364              L1   181     TE_peak   LR_open 0.4664948454
2365   Simple_repeat    37     TE_peak   LR_open 1.0000000000
2366              L1    62     TE_peak   LR_open 1.0000000000
2367   Simple_repeat    54     TE_peak ESR_close 1.0000000000
2368             MIR    86     TE_peak ESR_close 0.3755458515
2369            <NA>    NA not_TE_peak        NR           NA
2370   Simple_repeat    25     TE_peak   LR_open 1.0000000000
2371   Simple_repeat    60     TE_peak   LR_open 1.0000000000
2372   Simple_repeat    38     TE_peak   LR_open 1.0000000000
2373   Simple_repeat    35     TE_peak   LR_open 1.0000000000
2374             MIR   158     TE_peak        NR 1.0000000000
2375            <NA>    NA not_TE_peak        NR           NA
2376             Alu   117     TE_peak        NR 0.4062500000
2377  Low_complexity    64     TE_peak        NR 1.0000000000
2378            <NA>    NA not_TE_peak   LR_open           NA
2379             MIR    27     TE_peak  LR_close 0.1158798283
2380      hAT-Tip100    88     TE_peak        NR 1.0000000000
2381             MIR   155     TE_peak        NR 0.9281437126
2382             Alu     9     TE_peak        NR 0.0762711864
2383             MIR   162     TE_peak   LR_open 0.7363636364
2384   Simple_repeat    32     TE_peak   LR_open 1.0000000000
2385              L2    67     TE_peak   LR_open 1.0000000000
2386             MIR    20     TE_peak   LR_open 0.0961538462
2387            <NA>    NA not_TE_peak        NR           NA
2388             MIR    94     TE_peak        NR 0.5766871166
2389              L2   451     TE_peak        NR 0.9761904762
2390   Simple_repeat    47     TE_peak ESR_close 0.9591836735
2391              L2    70     TE_peak ESR_close 0.4117647059
2392            <NA>    NA not_TE_peak EAR_close           NA
2393            <NA>    NA not_TE_peak EAR_close           NA
2394              L2   146     TE_peak   LR_open 0.1857506361
2395            <NA>    NA not_TE_peak        NR           NA
2396     hAT-Charlie   157     TE_peak        NR 1.0000000000
2397       ERVL-MaLR    53     TE_peak        NR 1.0000000000
2398              L2    51     TE_peak   LR_open 1.0000000000
2399    TcMar-Tigger    65     TE_peak   LR_open 1.0000000000
2400             MIR    40     TE_peak        NR 0.4878048780
2401  Low_complexity    76     TE_peak        NR 1.0000000000
2402   Simple_repeat    32     TE_peak        NR 1.0000000000
2403   Simple_repeat   113     TE_peak        NR 1.0000000000
2404             MIR    66     TE_peak        NR 1.0000000000
2405              L2   144     TE_peak        NR 0.6400000000
2406            <NA>    NA not_TE_peak        NR           NA
2407             MIR    42     TE_peak        NR 1.0000000000
2408              L2   431     TE_peak ESR_close 1.0000000000
2409             MIR    14     TE_peak   LR_open 0.0809248555
2410            <NA>    NA not_TE_peak   LR_open           NA
2411             Alu   300     TE_peak    ESR_OC 0.9646302251
2412              L1    87     TE_peak    ESR_OC 1.0000000000
2413             Alu    35     TE_peak    ESR_OC 0.1182432432
2414             MIR   113     TE_peak        NR 0.6975308642
2415   Simple_repeat    41     TE_peak        NR 1.0000000000
2416              L2   102     TE_peak        NR 1.0000000000
2417             Alu   158     TE_peak        NR 0.5266666667
2418             Alu    95     TE_peak        NR 0.3166666667
2419              L1    56     TE_peak   LR_open 0.2137404580
2420            ERVL   359     TE_peak   LR_open 0.7720430108
2421             MIR   152     TE_peak        NR 1.0000000000
2422             Alu   158     TE_peak        NR 1.0000000000
2423            <NA>    NA not_TE_peak ESR_close           NA
2424              L2    48     TE_peak ESR_close 1.0000000000
2425             Alu    69     TE_peak ESR_close 0.2379310345
2426             MIR   200     TE_peak        NR 1.0000000000
2427             MIR    48     TE_peak        NR 1.0000000000
2428             MIR   157     TE_peak  LR_close 0.9874213836
2429              L2   113     TE_peak  LR_close 0.8071428571
2430             hAT    29     TE_peak  LR_close 1.0000000000
2431             Alu   270     TE_peak  LR_close 0.8626198083
2432             MIR    75     TE_peak        NR 0.3605769231
2433              L2   930     TE_peak        NR 1.0000000000
2434   Simple_repeat   133     TE_peak        NR 0.7643678161
2435             MIR    61     TE_peak        NR 0.3546511628
2436   Simple_repeat    33     TE_peak        NR 1.0000000000
2437              L2   154     TE_peak        NR 1.0000000000
2438             MIR   184     TE_peak        NR 1.0000000000
2439   Simple_repeat    22     TE_peak        NR 1.0000000000
2440       ERVL-MaLR    36     TE_peak        NR 0.1055718475
2441        tRNA-RTE    76     TE_peak ESR_close 1.0000000000
2442   Simple_repeat    19     TE_peak ESR_close 1.0000000000
2443             MIR   208     TE_peak ESR_close 1.0000000000
2444              L2   454     TE_peak   LR_open 0.9007936508
2445              L2   180     TE_peak        NR 0.2137767221
2446  Low_complexity    34     TE_peak ESR_close 1.0000000000
2447   Simple_repeat    47     TE_peak ESR_close 1.0000000000
2448   Simple_repeat   179     TE_peak ESR_close 0.8026905830
2449            <NA>    NA not_TE_peak ESR_close           NA
2450   Simple_repeat    43     TE_peak        NR 1.0000000000
2451            <NA>    NA not_TE_peak ESR_close           NA
2452            <NA>    NA not_TE_peak   LR_open           NA
2453  Low_complexity    74     TE_peak        NR 1.0000000000
2454              L2   608     TE_peak        NR 0.9870129870
2455            <NA>    NA not_TE_peak        NR           NA
2456             MIR    73     TE_peak        NR 0.7019230769
2457        tRNA-RTE    86     TE_peak EAR_close 1.0000000000
2458             MIR   109     TE_peak   LR_open 0.5141509434
2459             MIR    18     TE_peak   LR_open 0.1052631579
2460             MIR   116     TE_peak  LR_close 0.8055555556
2461  Low_complexity   126     TE_peak  LR_close 1.0000000000
2462            ERVL     8     TE_peak        NR 0.0308880309
2463       ERVL-MaLR   207     TE_peak        NR 0.9366515837
2464   Simple_repeat    85     TE_peak        NR 1.0000000000
2465             MIR    52     TE_peak   LR_open 0.2166666667
2466            <NA>    NA not_TE_peak  LR_close           NA
2467   Simple_repeat    42     TE_peak  ESR_open 1.0000000000
2468  Low_complexity    77     TE_peak        NR 1.0000000000
2469   Simple_repeat    71     TE_peak        NR 1.0000000000
2470   Simple_repeat    50     TE_peak        NR 1.0000000000
2471            <NA>    NA not_TE_peak        NR           NA
2472          Gypsy?    62     TE_peak        NR 1.0000000000
2473              L2    45     TE_peak        NR 1.0000000000
2474              L2   164     TE_peak        NR 0.6721311475
2475       ERVL-MaLR    98     TE_peak        NR 0.2295081967
2476              L2   247     TE_peak  LR_close 0.7993527508
2477            <NA>    NA not_TE_peak        NR           NA
2478   Simple_repeat    31     TE_peak        NR 1.0000000000
2479   Simple_repeat    30     TE_peak        NR 1.0000000000
2480   Simple_repeat    54     TE_peak        NR 1.0000000000
2481              L2    55     TE_peak  LR_close 0.3691275168
2482            <NA>    NA not_TE_peak        NR           NA
2483            <NA>    NA not_TE_peak    ESR_OC           NA
2484       ERVL-MaLR   331     TE_peak   LR_open 0.9297752809
2485              L2    73     TE_peak EAR_close 1.0000000000
2486   Simple_repeat    24     TE_peak EAR_close 1.0000000000
2487              L2   199     TE_peak EAR_close 0.7453183521
2488             MIR    72     TE_peak        NR 0.6260869565
2489             MIR   114     TE_peak        NR 1.0000000000
2490   Simple_repeat    58     TE_peak        NR 1.0000000000
2491   Simple_repeat    51     TE_peak        NR 1.0000000000
2492             MIR   149     TE_peak        NR 1.0000000000
2493            ERVL   216     TE_peak        NR 1.0000000000
2494             MIR   132     TE_peak        NR 0.9361702128
2495              L2    20     TE_peak        NR 0.1818181818
2496              L2   187     TE_peak        NR 1.0000000000
2497              L2   113     TE_peak        NR 1.0000000000
2498              L2   135     TE_peak        NR 1.0000000000
2499             MIR    70     TE_peak        NR 1.0000000000
2500    TcMar-Tigger    21     TE_peak        NR 0.0675241158
2501             MIR   123     TE_peak        NR 1.0000000000
2502             Alu    43     TE_peak        NR 0.1414473684
2503              L2   142     TE_peak  ESR_open 1.0000000000
2504              L2    27     TE_peak  ESR_open 0.2547169811
2505              L2   305     TE_peak  EAR_open 0.6963470320
2506             MIR    65     TE_peak   LR_open 0.3779069767
2507            ERV1   223     TE_peak   LR_open 0.5126436782
2508  Low_complexity    82     TE_peak        NR 1.0000000000
2509             Alu    13     TE_peak        NR 0.0464285714
2510             MIR   193     TE_peak   LR_open 1.0000000000
2511              L2    99     TE_peak   LR_open 1.0000000000
2512              L2   231     TE_peak   LR_open 1.0000000000
2513   Simple_repeat   161     TE_peak   LR_open 0.8050000000
2514             MIR   208     TE_peak   LR_open 1.0000000000
2515             Alu    48     TE_peak   LR_open 1.0000000000
2516             Alu    93     TE_peak   LR_open 1.0000000000
2517             Alu   205     TE_peak   LR_open 0.9903381643
2518             Alu   297     TE_peak  ESR_open 1.0000000000
2519             Alu   285     TE_peak        NR 0.9861591696
2520             MIR   119     TE_peak        NR 1.0000000000
2521             MIR    48     TE_peak        NR 1.0000000000
2522   Simple_repeat   123     TE_peak        NR 1.0000000000
2523            ERV1   515     TE_peak        NR 0.4221311475
2524     hAT-Charlie   117     TE_peak ESR_close 0.3323863636
2525             MIR   130     TE_peak ESR_close 1.0000000000
2526        PiggyBac    26     TE_peak   LR_open 0.2047244094
2527    TcMar-Tigger   299     TE_peak   LR_open 0.5128644940
2528            <NA>    NA not_TE_peak        NR           NA
2529    TcMar-Tigger   258     TE_peak        NR 0.3355006502
2530             Alu   130     TE_peak        NR 1.0000000000
2531    TcMar-Tigger    25     TE_peak        NR 0.0766871166
2532    TcMar-Tigger   232     TE_peak        NR 1.0000000000
2533    TcMar-Tigger    32     TE_peak        NR 0.3368421053
2534   Simple_repeat    16     TE_peak        NR 0.0423280423
2535              L1   343     TE_peak   not_mrc 0.6533333333
2536             Alu     4     TE_peak        NR 0.0139860140
2537             Alu    78     TE_peak        NR 0.2516129032
2538            <NA>    NA not_TE_peak        NR           NA
2539            ERV1   133     TE_peak        NR 0.7388888889
2540            ERV1  1110     TE_peak        NR 0.9866666667
2541            ERV1    11     TE_peak        NR 0.1571428571
2542     hAT-Charlie   221     TE_peak   LR_open 0.9608695652
2543             Alu    99     TE_peak   LR_open 0.5076923077
2544             MIR   232     TE_peak        NR 1.0000000000
2545             Alu   323     TE_peak   LR_open 1.0000000000
2546             Alu    96     TE_peak ESR_close 0.6233766234
2547   Simple_repeat    31     TE_peak  ESR_open 1.0000000000
2548             Alu   150     TE_peak        NR 1.0000000000
2549            <NA>    NA not_TE_peak   LR_open           NA
2550             Alu   172     TE_peak        NR 1.0000000000
2551     hAT-Charlie   236     TE_peak        NR 1.0000000000
2552             Alu   107     TE_peak        NR 0.6564417178
2553   Simple_repeat     1     TE_peak        NR 0.0185185185
2554   Simple_repeat    44     TE_peak        NR 1.0000000000
2555             MIR   113     TE_peak        NR 0.7635135135
2556             Alu    40     TE_peak        NR 0.1311475410
2557             MIR    98     TE_peak        NR 1.0000000000
2558             MIR   150     TE_peak        NR 1.0000000000
2559             Alu   118     TE_peak        NR 0.4338235294
2560             Alu    98     TE_peak   LR_open 0.3288590604
2561              L1    52     TE_peak   LR_open 1.0000000000
2562            ERVL   254     TE_peak   LR_open 1.0000000000
2563             Alu   135     TE_peak   LR_open 0.4655172414
2564            <NA>    NA not_TE_peak  EAR_open           NA
2565            <NA>    NA not_TE_peak   LR_open           NA
2566             Alu   117     TE_peak        NR 0.3861386139
2567             Alu    50     TE_peak        NR 0.5681818182
2568             MIR   104     TE_peak ESR_close 0.5048543689
2569             MIR   143     TE_peak        NR 0.6875000000
2570            <NA>    NA not_TE_peak   LR_open           NA
2571            <NA>    NA not_TE_peak        NR           NA
2572              L2    44     TE_peak        NR 0.3636363636
2573              L2   298     TE_peak        NR 1.0000000000
2574            <NA>    NA not_TE_peak        NR           NA
2575             MIR    83     TE_peak        NR 0.5724137931
2576             MIR   238     TE_peak        NR 1.0000000000
2577   Simple_repeat    33     TE_peak        NR 1.0000000000
2578             MIR   159     TE_peak        NR 1.0000000000
2579             MIR    34     TE_peak        NR 0.1511111111
2580              L2   158     TE_peak        NR 1.0000000000
2581   hAT-Blackjack    87     TE_peak   LR_open 1.0000000000
2582   Simple_repeat    35     TE_peak   LR_open 1.0000000000
2583   Simple_repeat    45     TE_peak   LR_open 1.0000000000
2584             MIR   205     TE_peak   LR_open 1.0000000000
2585             Alu    59     TE_peak   LR_open 0.4436090226
2586             Alu   165     TE_peak   LR_open 0.5305466238
2587            <NA>    NA not_TE_peak        NR           NA
2588             MIR   235     TE_peak        NR 1.0000000000
2589     hAT-Charlie    30     TE_peak        NR 0.4761904762
2590             MIR   221     TE_peak        NR 1.0000000000
2591   Simple_repeat    34     TE_peak        NR 1.0000000000
2592             Alu    90     TE_peak   LR_open 0.5325443787
2593             MIR   213     TE_peak   LR_open 1.0000000000
2594             MIR   191     TE_peak   LR_open 1.0000000000
2595            <NA>    NA not_TE_peak ESR_close           NA
2596             MIR   188     TE_peak   LR_open 0.9641025641
2597             Alu    99     TE_peak   LR_open 0.5625000000
2598            <NA>    NA not_TE_peak  LR_close           NA
2599             MIR   249     TE_peak  LR_close 0.9920318725
2600             MIR     3     TE_peak        NR 0.0186335404
2601              L2    85     TE_peak        NR 0.3541666667
2602   Simple_repeat    80     TE_peak        NR 1.0000000000
2603   Simple_repeat    36     TE_peak        NR 1.0000000000
2604   Simple_repeat    22     TE_peak        NR 1.0000000000
2605   Simple_repeat    10     TE_peak        NR 0.1052631579
2606             CR1    30     TE_peak        NR 0.2027027027
2607             Alu    49     TE_peak        NR 0.1649831650
2608   Simple_repeat    41     TE_peak        NR 1.0000000000
2609             CR1    75     TE_peak        NR 1.0000000000
2610              L2   169     TE_peak        NR 1.0000000000
2611             MIR   158     TE_peak        NR 0.8926553672
2612             Alu     1     TE_peak ESR_close 0.0037878788
2613              L1   102     TE_peak   LR_open 0.8160000000
2614            ERV1   161     TE_peak   LR_open 1.0000000000
2615             Alu   290     TE_peak   LR_open 1.0000000000
2616            ERV1    49     TE_peak   LR_open 1.0000000000
2617   Simple_repeat     1     TE_peak   LR_open 0.0090090090
2618   Simple_repeat    31     TE_peak        NR 1.0000000000
2619  Low_complexity    12     TE_peak        NR 0.3750000000
2620             CR1    10     TE_peak        NR 0.1388888889
2621            ERVL    85     TE_peak   LR_open 1.0000000000
2622             MIR   121     TE_peak  LR_close 1.0000000000
2623            ERV1   711     TE_peak  LR_close 0.7571884984
2624             MIR    80     TE_peak        NR 0.5839416058
2625              L2    75     TE_peak        NR 0.6944444444
2626             MIR    16     TE_peak        NR 0.0846560847
2627             Alu    31     TE_peak        NR 0.2262773723
2628   Simple_repeat   136     TE_peak EAR_close 1.0000000000
2629  Low_complexity    26     TE_peak EAR_close 0.3170731707
2630             MIR   109     TE_peak        NR 1.0000000000
2631             MIR    38     TE_peak        NR 0.2695035461
2632             Alu   246     TE_peak        NR 0.8200000000
2633             MIR   140     TE_peak ESR_close 0.8139534884
2634              L2   242     TE_peak ESR_close 1.0000000000
2635             MIR    67     TE_peak  LR_close 0.5317460317
2636             MIR   112     TE_peak  LR_close 1.0000000000
2637            <NA>    NA not_TE_peak   not_mrc           NA
2638             Alu    39     TE_peak        NR 0.3046875000
2639              L1    21     TE_peak        NR 0.1039603960
2640              L2   102     TE_peak        NR 1.0000000000
2641             MIR    46     TE_peak        NR 0.1803921569
2642            <NA>    NA not_TE_peak   LR_open           NA
2643             MIR   198     TE_peak        NR 1.0000000000
2644             MIR    72     TE_peak   LR_open 0.2938775510
2645             Alu    60     TE_peak   LR_open 0.2000000000
2646             MIR   185     TE_peak EAR_close 0.7838983051
2647  Low_complexity    36     TE_peak EAR_close 1.0000000000
2648             MIR    66     TE_peak        NR 0.2907488987
2649  Low_complexity    51     TE_peak        NR 1.0000000000
2650             MIR    46     TE_peak   not_mrc 0.1957446809
2651              L2    58     TE_peak        NR 0.9062500000
2652            <NA>    NA not_TE_peak ESR_close           NA
2653              L2    31     TE_peak ESR_close 0.3780487805
2654   Simple_repeat    87     TE_peak ESR_close 1.0000000000
2655   Simple_repeat    36     TE_peak        NR 0.4137931034
2656   Simple_repeat    76     TE_peak        NR 0.9870129870
2657   Simple_repeat    66     TE_peak        NR 1.0000000000
2658             MIR    56     TE_peak  LR_close 0.6913580247
2659             MIR    40     TE_peak    ESR_OC 0.2547770701
2660             MIR   124     TE_peak    ESR_OC 1.0000000000
2661             MIR   199     TE_peak    ESR_OC 0.8468085106
2662             Alu    64     TE_peak   LR_open 0.2064516129
2663              L1   147     TE_peak   LR_open 1.0000000000
2664             MIR   222     TE_peak   LR_open 1.0000000000
2665             MIR   165     TE_peak        NR 0.9880239521
2666             MIR   213     TE_peak        NR 1.0000000000
2667             MIR    58     TE_peak  LR_close 0.4715447154
2668   Simple_repeat    34     TE_peak        NR 1.0000000000
2669   Simple_repeat    28     TE_peak        NR 1.0000000000
2670   Simple_repeat    37     TE_peak        NR 1.0000000000
2671   Simple_repeat    19     TE_peak        NR 1.0000000000
2672   Simple_repeat    77     TE_peak        NR 1.0000000000
2673   Simple_repeat    35     TE_peak        NR 1.0000000000
2674  Low_complexity    20     TE_peak        NR 0.2941176471
2675             MIR    33     TE_peak        NR 0.3173076923
2676             Alu    87     TE_peak EAR_close 0.3307984791
2677             MIR    83     TE_peak EAR_close 1.0000000000
2678             MIR   140     TE_peak EAR_close 1.0000000000
2679   Simple_repeat    27     TE_peak EAR_close 1.0000000000
2680   Simple_repeat    54     TE_peak        NR 1.0000000000
2681   Simple_repeat    25     TE_peak        NR 1.0000000000
2682             MIR   123     TE_peak        NR 1.0000000000
2683             MIR    19     TE_peak        NR 0.3518518519
2684             Alu   242     TE_peak        NR 0.8521126761
2685            <NA>    NA not_TE_peak  EAR_open           NA
2686            <NA>    NA not_TE_peak        NR           NA
2687            <NA>    NA not_TE_peak  LR_close           NA
2688             Alu    37     TE_peak ESR_close 0.1396226415
2689            ERVL   288     TE_peak ESR_close 1.0000000000
2690   Simple_repeat    35     TE_peak        NR 1.0000000000
2691             MIR    72     TE_peak        NR 1.0000000000
2692             Alu    10     TE_peak        NR 0.0335570470
2693            ERV1   164     TE_peak EAR_close 0.3065420561
2694             Alu    45     TE_peak EAR_close 0.1757812500
2695             MIR    20     TE_peak ESR_close 0.1351351351
2696             MIR   179     TE_peak ESR_close 1.0000000000
2697             Alu   149     TE_peak ESR_close 1.0000000000
2698   Simple_repeat    39     TE_peak ESR_close 1.0000000000
2699             MIR    37     TE_peak        NR 0.1978609626
2700             Alu    78     TE_peak        NR 0.6093750000
2701              L2   461     TE_peak   LR_open 0.8882466281
2702  Low_complexity    34     TE_peak        NR 1.0000000000
2703            <NA>    NA not_TE_peak        NR           NA
2704             MIR    70     TE_peak  ESR_open 1.0000000000
2705             Alu   183     TE_peak  ESR_open 0.5903225806
2706             MIR   132     TE_peak        NR 1.0000000000
2707             MIR    88     TE_peak  ESR_open 1.0000000000
2708             Alu   183     TE_peak  ESR_open 0.6310344828
2709              L2   246     TE_peak   LR_open 0.5394736842
2710              L2     1     TE_peak   LR_open 0.0042918455
2711              L2   222     TE_peak   LR_open 1.0000000000
2712              L2    50     TE_peak   LR_open 0.3571428571
2713              L1   158     TE_peak        NR 1.0000000000
2714             Alu   219     TE_peak        NR 0.7019230769
2715       ERVL-MaLR    94     TE_peak  LR_close 0.4454976303
2716       ERVL-MaLR   120     TE_peak  LR_close 0.8888888889
2717            <NA>    NA not_TE_peak  LR_close           NA
2718             MIR   181     TE_peak  ESR_open 1.0000000000
2719            ERVL   267     TE_peak  ESR_open 1.0000000000
2720             MIR   146     TE_peak  ESR_open 1.0000000000
2721              L2   132     TE_peak  ESR_open 0.8859060403
2722            <NA>    NA not_TE_peak        NR           NA
2723     hAT-Charlie    70     TE_peak  ESR_open 1.0000000000
2724   TcMar-Mariner    55     TE_peak  ESR_open 1.0000000000
2725     hAT-Charlie    77     TE_peak  ESR_open 1.0000000000
2726             CR1    19     TE_peak  ESR_open 0.1085714286
2727   Simple_repeat    34     TE_peak  ESR_open 1.0000000000
2728            <NA>    NA not_TE_peak ESR_close           NA
2729   Simple_repeat     6     TE_peak ESR_close 0.0810810811
2730              L2    83     TE_peak        NR 1.0000000000
2731   Simple_repeat    54     TE_peak        NR 1.0000000000
2732              L2    33     TE_peak        NR 1.0000000000
2733   Simple_repeat    15     TE_peak        NR 0.3409090909
2734            <NA>    NA not_TE_peak ESR_close           NA
2735   Simple_repeat    38     TE_peak  LR_close 0.3838383838
2736             MIR    19     TE_peak   LR_open 0.9500000000
2737             MIR    39     TE_peak   LR_open 1.0000000000
2738     hAT-Charlie   163     TE_peak   LR_open 1.0000000000
2739             MIR    50     TE_peak   LR_open 1.0000000000
2740             Alu    48     TE_peak   LR_open 0.1632653061
2741             MIR   134     TE_peak ESR_close 0.9115646259
2742   Simple_repeat    32     TE_peak ESR_close 1.0000000000
2743             MIR   139     TE_peak ESR_close 1.0000000000
2744              L2   165     TE_peak EAR_close 0.7432432432
2745              L2   403     TE_peak ESR_close 0.4780545670
2746             Alu    44     TE_peak ESR_close 0.1476510067
2747            <NA>    NA not_TE_peak ESR_close           NA
2748              L2   179     TE_peak  EAR_open 1.0000000000
2749              L2    64     TE_peak  EAR_open 1.0000000000
2750             MIR   107     TE_peak  EAR_open 1.0000000000
2751   Simple_repeat    48     TE_peak  LR_close 1.0000000000
2752  Low_complexity    60     TE_peak  LR_close 1.0000000000
2753            <NA>    NA not_TE_peak        NR           NA
2754     hAT-Charlie   138     TE_peak        NR 0.4791666667
2755             Alu   298     TE_peak        NR 1.0000000000
2756     hAT-Charlie   266     TE_peak        NR 1.0000000000
2757             Alu    69     TE_peak        NR 0.2254901961
2758            <NA>    NA not_TE_peak        NR           NA
2759             MIR   123     TE_peak        NR 1.0000000000
2760             MIR    21     TE_peak        NR 0.2876712329
2761              L2    47     TE_peak        NR 1.0000000000
2762             Alu    64     TE_peak        NR 0.2133333333
2763            ERVL   154     TE_peak  LR_close 0.4031413613
2764             Alu   222     TE_peak  LR_close 0.7576791809
2765             Alu    38     TE_peak        NR 0.1245901639
2766             MIR    76     TE_peak        NR 1.0000000000
2767      hAT-Tip100   134     TE_peak        NR 1.0000000000
2768            ERVL   382     TE_peak  EAR_open 1.0000000000
2769             Alu    57     TE_peak  EAR_open 0.1850649351
2770             Alu    24     TE_peak        NR 0.0781758958
2771             MIR    76     TE_peak        NR 1.0000000000
2772      hAT-Tip100   134     TE_peak        NR 1.0000000000
2773             MIR    62     TE_peak        NR 0.3712574850
2774            <NA>    NA not_TE_peak        NR           NA
2775             Alu     5     TE_peak        NR 0.0176056338
2776             MIR   129     TE_peak        NR 1.0000000000
2777             MIR   180     TE_peak        NR 1.0000000000
2778             Alu    28     TE_peak ESR_close 0.0952380952
2779             Alu     5     TE_peak ESR_close 0.0160256410
2780   Simple_repeat    31     TE_peak ESR_close 1.0000000000
2781             MIR    68     TE_peak ESR_close 1.0000000000
2782             Alu    60     TE_peak        NR 0.1967213115
2783             MIR    54     TE_peak        NR 1.0000000000
2784   Simple_repeat    61     TE_peak        NR 1.0000000000
2785   Simple_repeat    28     TE_peak        NR 1.0000000000
2786            <NA>    NA not_TE_peak        NR           NA
2787            <NA>    NA not_TE_peak        NR           NA
2788             Alu   113     TE_peak        NR 0.4035714286
2789             MIR   117     TE_peak        NR 0.8125000000
2790  Low_complexity    75     TE_peak        NR 1.0000000000
2791             MIR    46     TE_peak        NR 0.7301587302
2792             MIR   178     TE_peak        NR 0.8640776699
2793            <NA>    NA not_TE_peak ESR_close           NA
2794            <NA>    NA not_TE_peak   LR_open           NA
2795             MIR   171     TE_peak        NR 1.0000000000
2796             MIR    25     TE_peak        NR 0.1785714286
2797             MIR    28     TE_peak        NR 0.1497326203
2798             MIR   125     TE_peak        NR 1.0000000000
2799             MIR    94     TE_peak        NR 1.0000000000
2800              L2     2     TE_peak  LR_close 0.0357142857
2801   Simple_repeat    43     TE_peak   LR_open 1.0000000000
2802   Simple_repeat     6     TE_peak        NR 0.1500000000
2803   Simple_repeat    37     TE_peak        NR 1.0000000000
2804   Simple_repeat    41     TE_peak        NR 1.0000000000
2805             MIR   135     TE_peak  ESR_open 1.0000000000
2806              L2   337     TE_peak ESR_close 0.7556053812
2807       ERVL-MaLR    38     TE_peak        NR 0.0820734341
2808            <NA>    NA not_TE_peak        NR           NA
2809             MIR    68     TE_peak        NR 0.2833333333
2810              L1   161     TE_peak        NR 0.4327956989
2811             MIR    60     TE_peak EAR_close 0.2620087336
2812   Simple_repeat    25     TE_peak EAR_close 1.0000000000
2813            ERVL    89     TE_peak  LR_close 0.5779220779
2814             Alu   125     TE_peak  LR_close 1.0000000000
2815             MIR   242     TE_peak ESR_close 0.9641434263
2816             MIR   131     TE_peak ESR_close 0.8187500000
2817             MIR   187     TE_peak        NR 0.8779342723
2818             MIR    16     TE_peak  LR_close 0.1118881119
2819             Alu   151     TE_peak  LR_close 1.0000000000
2820             MIR   112     TE_peak   LR_open 0.6473988439
2821   Simple_repeat    67     TE_peak ESR_close 0.2851063830
2822             MIR   145     TE_peak        NR 0.7073170732
2823             MIR   220     TE_peak        NR 0.9649122807
2824            <NA>    NA not_TE_peak        NR           NA
2825              L2    83     TE_peak        NR 0.4770114943
2826             MIR    12     TE_peak        NR 0.0502092050
2827              L2    71     TE_peak        NR 1.0000000000
2828              L2   101     TE_peak        NR 1.0000000000
2829             MIR    52     TE_peak        NR 1.0000000000
2830      hAT-Tip100   166     TE_peak        NR 1.0000000000
2831              L2   462     TE_peak  LR_close 0.4560710760
2832             MIR    90     TE_peak        NR 0.8737864078
2833  Low_complexity    25     TE_peak        NR 0.5952380952
2834             MIR    61     TE_peak        NR 0.3112244898
2835             MIR   117     TE_peak        NR 0.7852348993
2836   Simple_repeat    40     TE_peak        NR 1.0000000000
2837  Low_complexity    42     TE_peak        NR 1.0000000000
2838             MIR    65     TE_peak        NR 1.0000000000
2839             MIR   147     TE_peak        NR 0.8258426966
2840             MIR    99     TE_peak        NR 0.6000000000
2841              L2   139     TE_peak        NR 1.0000000000
2842   Simple_repeat    46     TE_peak        NR 1.0000000000
2843             MIR   228     TE_peak        NR 0.9047619048
2844             MIR    12     TE_peak  LR_close 0.0502092050
2845              L2    18     TE_peak        NR 0.0511363636
2846     hAT-Charlie   320     TE_peak        NR 1.0000000000
2847            ERV1   578     TE_peak        NR 0.5774225774
2848            LTR?    96     TE_peak        NR 0.4120171674
2849             MIR   205     TE_peak        NR 1.0000000000
2850            ERVL   217     TE_peak        NR 0.4401622718
2851              L2   265     TE_peak        NR 0.3967065868
2852              L2   630     TE_peak        NR 0.4992076070
2853              L2   181     TE_peak        NR 1.0000000000
2854            <NA>    NA not_TE_peak        NR           NA
2855            <NA>    NA not_TE_peak        NR           NA
2856  Low_complexity    50     TE_peak EAR_close 1.0000000000
2857   Simple_repeat    29     TE_peak        NR 1.0000000000
2858            <NA>    NA not_TE_peak        NR           NA
2859              L1    11     TE_peak  LR_close 0.0355987055
2860              L2    93     TE_peak  LR_close 1.0000000000
2861             MIR   103     TE_peak  LR_close 0.5364583333
2862            <NA>    NA not_TE_peak  EAR_open           NA
2863             MIR    47     TE_peak ESR_close 0.2540540541
2864   Simple_repeat    35     TE_peak   LR_open 1.0000000000
2865            <NA>    NA not_TE_peak        NR           NA
2866       ERVL-MaLR   181     TE_peak        NR 1.0000000000
2867             MIR   103     TE_peak        NR 1.0000000000
2868            <NA>    NA not_TE_peak    ESR_OC           NA
2869              L2   153     TE_peak ESR_close 0.4693251534
2870             MIR    33     TE_peak   not_mrc 0.3142857143
2871              L1   150     TE_peak   not_mrc 1.0000000000
2872        tRNA-RTE    71     TE_peak        NR 0.3879781421
2873             MIR    10     TE_peak        NR 0.0396825397
2874             MIR    35     TE_peak  ESR_open 0.1804123711
2875   Simple_repeat   775     TE_peak  ESR_open 0.6652360515
2876   Simple_repeat   314     TE_peak   not_mrc 0.2695278970
2877            <NA>    NA not_TE_peak EAR_close           NA
2878             MIR    23     TE_peak        NR 0.2300000000
2879             MIR   197     TE_peak        NR 0.9292452830
2880              L1    61     TE_peak        NR 0.2293233083
2881            <NA>    NA not_TE_peak        NR           NA
2882  Low_complexity    79     TE_peak        NR 1.0000000000
2883             MIR   245     TE_peak        NR 1.0000000000
2884            <NA>    NA not_TE_peak        NR           NA
2885             Alu   325     TE_peak   LR_open 1.0000000000
2886            <NA>    NA not_TE_peak        NR           NA
2887     hAT-Charlie   228     TE_peak        NR 1.0000000000
2888             MIR   228     TE_peak        NR 1.0000000000
2889     hAT-Charlie   178     TE_peak        NR 1.0000000000
2890             MIR    10     TE_peak        NR 0.1176470588
2891            <NA>    NA not_TE_peak EAR_close           NA
2892            <NA>    NA not_TE_peak  LR_close           NA
2893            <NA>    NA not_TE_peak        NR           NA
2894            <NA>    NA not_TE_peak        NR           NA
2895            <NA>    NA not_TE_peak EAR_close           NA
2896             MIR    46     TE_peak        NR 0.1811023622
2897            <NA>    NA not_TE_peak        NR           NA
2898             MIR   144     TE_peak        NR 1.0000000000
2899   Simple_repeat    45     TE_peak        NR 1.0000000000
2900              L2   117     TE_peak        NR 1.0000000000
2901             MIR    39     TE_peak        NR 0.1780821918
2902            <NA>    NA not_TE_peak   LR_open           NA
2903             MIR   173     TE_peak   LR_open 1.0000000000
2904             MIR    42     TE_peak   LR_open 1.0000000000
2905              L2    47     TE_peak  LR_close 0.6619718310
2906             MIR   156     TE_peak  LR_close 1.0000000000
2907             MIR   215     TE_peak        NR 1.0000000000
2908   Simple_repeat    32     TE_peak        NR 0.8000000000
2909             MIR    60     TE_peak EAR_close 1.0000000000
2910             MIR    30     TE_peak EAR_close 0.1219512195
2911       ERVL-MaLR   205     TE_peak        NR 0.7347670251
2912             MIR    94     TE_peak EAR_close 1.0000000000
2913              L2   163     TE_peak EAR_close 1.0000000000
2914             MIR   225     TE_peak EAR_close 1.0000000000
2915             MIR    31     TE_peak EAR_close 0.1712707182
2916             MIR   127     TE_peak   LR_open 1.0000000000
2917             MIR    63     TE_peak   LR_open 0.3247422680
2918              L2   343     TE_peak   LR_open 0.4978229318
2919             Alu   163     TE_peak   LR_open 0.5309446254
2920            <NA>    NA not_TE_peak   not_mrc           NA
2921             Alu   286     TE_peak        NR 1.0000000000
2922     hAT-Charlie    22     TE_peak   LR_open 0.1896551724
2923             MIR   219     TE_peak   LR_open 1.0000000000
2924            <NA>    NA not_TE_peak  LR_close           NA
2925  Low_complexity    77     TE_peak  LR_close 1.0000000000
2926             MIR   196     TE_peak  LR_close 1.0000000000
2927              L2    20     TE_peak  LR_close 0.2941176471
2928             MIR    84     TE_peak ESR_close 1.0000000000
2929     hAT-Charlie    85     TE_peak   LR_open 0.4381443299
2930   Simple_repeat    41     TE_peak   LR_open 1.0000000000
2931             MIR   122     TE_peak   LR_open 1.0000000000
2932      hAT-Tip100    56     TE_peak   LR_open 1.0000000000
2933            <NA>    NA not_TE_peak        NR           NA
2934             Alu    71     TE_peak        NR 0.2343234323
2935       ERVL-MaLR   247     TE_peak        NR 0.6977401130
2936              L1   167     TE_peak  LR_close 1.0000000000
2937             MIR   206     TE_peak        NR 1.0000000000
2938              L2    47     TE_peak ESR_close 1.0000000000
2939             MIR    94     TE_peak ESR_close 1.0000000000
2940              L2    68     TE_peak ESR_close 1.0000000000
2941             MIR    52     TE_peak ESR_close 0.2212765957
2942             Alu   156     TE_peak   LR_open 0.5234899329
2943              L1    15     TE_peak   LR_open 1.0000000000
2944   Simple_repeat    32     TE_peak   LR_open 1.0000000000
2945              L2    69     TE_peak   LR_open 1.0000000000
2946              L2   168     TE_peak   LR_open 1.0000000000
2947             Alu    44     TE_peak   LR_open 0.2993197279
2948              L2   103     TE_peak        NR 1.0000000000
2949   Simple_repeat    74     TE_peak        NR 1.0000000000
2950   Simple_repeat    55     TE_peak        NR 1.0000000000
2951            <NA>    NA not_TE_peak  EAR_open           NA
2952            <NA>    NA not_TE_peak   LR_open           NA
2953            <NA>    NA not_TE_peak        NR           NA
2954              L2   181     TE_peak   LR_open 0.7702127660
2955             Alu    86     TE_peak   LR_open 0.3071428571
2956              L2    61     TE_peak   LR_open 0.0911808670
2957              L2   177     TE_peak   LR_open 0.4244604317
2958     hAT-Charlie    74     TE_peak   LR_open 0.3718592965
2959     hAT-Charlie   155     TE_peak        NR 1.0000000000
2960             Alu    49     TE_peak        NR 0.4152542373
2961             Alu   111     TE_peak        NR 0.3762711864
2962             CR1    37     TE_peak        NR 1.0000000000
2963             CR1   100     TE_peak        NR 1.0000000000
2964            <NA>    NA not_TE_peak   LR_open           NA
2965             MIR    38     TE_peak        NR 0.3275862069
2966             MIR    54     TE_peak        NR 0.3673469388
2967             Alu   178     TE_peak  ESR_open 0.6520146520
2968             Alu    68     TE_peak  ESR_open 0.4473684211
2969            <NA>    NA not_TE_peak        NR           NA
2970            <NA>    NA not_TE_peak        NR           NA
2971            <NA>    NA not_TE_peak        NR           NA
2972            <NA>    NA not_TE_peak        NR           NA
2973  Low_complexity    44     TE_peak   LR_open 1.0000000000
2974              L1    65     TE_peak   LR_open 0.1825842697
2975             Alu   260     TE_peak   LR_open 1.0000000000
2976             Alu    95     TE_peak   LR_open 0.3275862069
2977   Simple_repeat   110     TE_peak  EAR_open 1.0000000000
2978   Simple_repeat    44     TE_peak  EAR_open 1.0000000000
2979     hAT-Charlie    26     TE_peak        NR 0.1925925926
2980             MIR   123     TE_peak        NR 1.0000000000
2981             MIR    83     TE_peak        NR 1.0000000000
2982             MIR   222     TE_peak        NR 1.0000000000
2983              L2    63     TE_peak        NR 1.0000000000
2984             CR1    93     TE_peak        NR 0.8454545455
2985   Simple_repeat    40     TE_peak        NR 1.0000000000
2986             Alu   220     TE_peak        NR 1.0000000000
2987              L2    43     TE_peak   LR_open 0.2457142857
2988             Alu   181     TE_peak   LR_open 1.0000000000
2989             Alu   126     TE_peak   LR_open 0.4256756757
2990             MIR    12     TE_peak        NR 0.0625000000
2991             Alu    14     TE_peak        NR 0.0472972973
2992              L2    96     TE_peak   LR_open 0.3555555556
2993              L2   289     TE_peak   LR_open 1.0000000000
2994             Alu     4     TE_peak   LR_open 0.0130293160
2995   Simple_repeat    82     TE_peak        NR 1.0000000000
2996   Simple_repeat    64     TE_peak        NR 1.0000000000
2997              L2    30     TE_peak        NR 0.1045296167
2998             MIR    75     TE_peak        NR 1.0000000000
2999   Simple_repeat    30     TE_peak        NR 1.0000000000
3000  Low_complexity    39     TE_peak        NR 1.0000000000
3001              L2   140     TE_peak   LR_open 1.0000000000
3002             MIR    50     TE_peak        NR 1.0000000000
3003             Alu    96     TE_peak  EAR_open 0.5517241379
3004             MIR    89     TE_peak  EAR_open 1.0000000000
3005    TcMar-Tigger   197     TE_peak  EAR_open 1.0000000000
3006    TcMar-Tigger   118     TE_peak  EAR_open 1.0000000000
3007     hAT-Charlie   454     TE_peak        NR 0.8747591522
3008   Simple_repeat   171     TE_peak        NR 1.0000000000
3009             MIR   204     TE_peak        NR 1.0000000000
3010             MIR   182     TE_peak        NR 1.0000000000
3011     hAT-Charlie   139     TE_peak        NR 1.0000000000
3012             MIR   137     TE_peak        NR 1.0000000000
3013    TcMar-Tigger   126     TE_peak        NR 1.0000000000
3014              L1   105     TE_peak        NR 1.0000000000
3015              L2   336     TE_peak   LR_open 0.7044025157
3016   Simple_repeat    30     TE_peak   LR_open 1.0000000000
3017             MIR    41     TE_peak   LR_open 0.2265193370
3018             MIR   146     TE_peak  LR_close 0.5703125000
3019        RTE-BovB   107     TE_peak  LR_close 1.0000000000
3020              L2    48     TE_peak  LR_close 0.1714285714
3021            ERV1   552     TE_peak   LR_open 1.0000000000
3022   Simple_repeat    51     TE_peak        NR 0.9107142857
3023              L2   114     TE_peak        NR 1.0000000000
3024            <NA>    NA not_TE_peak        NR           NA
3025             MIR   132     TE_peak        NR 1.0000000000
3026   Simple_repeat   121     TE_peak        NR 1.0000000000
3027   Simple_repeat    36     TE_peak        NR 1.0000000000
3028   Simple_repeat    32     TE_peak        NR 1.0000000000
3029   Simple_repeat    48     TE_peak        NR 1.0000000000
3030             Alu    23     TE_peak   LR_open 0.0712074303
3031             Alu   142     TE_peak   LR_open 1.0000000000
3032             MIR    87     TE_peak   LR_open 0.7981651376
3033            <NA>    NA not_TE_peak        NR           NA
3034             Alu    43     TE_peak        NR 0.1373801917
3035             MIR    45     TE_peak        NR 1.0000000000
3036              L2    66     TE_peak        NR 1.0000000000
3037             MIR   213     TE_peak        NR 0.9953271028
3038       ERVL-MaLR   246     TE_peak        NR 0.5234042553
3039              L2   119     TE_peak        NR 0.8206896552
3040       ERVL-MaLR   163     TE_peak ESR_close 1.0000000000
3041             CR1   119     TE_peak        NR 1.0000000000
3042  Low_complexity    40     TE_peak        NR 1.0000000000
3043             MIR    93     TE_peak        NR 0.8378378378
3044      hAT-Tip100    36     TE_peak        NR 1.0000000000
3045             MIR   104     TE_peak        NR 1.0000000000
3046             Alu   203     TE_peak        NR 1.0000000000
3047             MIR    81     TE_peak ESR_close 1.0000000000
3048             MIR   156     TE_peak ESR_close 1.0000000000
3049   Simple_repeat    28     TE_peak   not_mrc 1.0000000000
3050   Simple_repeat    20     TE_peak   not_mrc 1.0000000000
3051             Alu   153     TE_peak        NR 0.5049504950
3052             MIR    37     TE_peak        NR 1.0000000000
3053             MIR    67     TE_peak        NR 1.0000000000
3054             Alu    67     TE_peak        NR 0.2596899225
3055             Alu   141     TE_peak   LR_open 0.4715719064
3056             MIR    49     TE_peak   LR_open 0.3475177305
3057             MIR    71     TE_peak        NR 0.3169642857
3058   Simple_repeat    23     TE_peak        NR 1.0000000000
3059   Simple_repeat    32     TE_peak        NR 1.0000000000
3060             MIR    15     TE_peak        NR 0.1181102362
3061             MIR    41     TE_peak        NR 1.0000000000
3062             MIR   113     TE_peak        NR 1.0000000000
3063             MIR    69     TE_peak   LR_open 1.0000000000
3064            <NA>    NA not_TE_peak        NR           NA
3065             Alu   216     TE_peak        NR 0.8059701493
3066            <NA>    NA not_TE_peak        NR           NA
3067            <NA>    NA not_TE_peak  LR_close           NA
3068             MIR   132     TE_peak        NR 1.0000000000
3069   Simple_repeat    17     TE_peak        NR 1.0000000000
3070            <NA>    NA not_TE_peak   LR_open           NA
3071             MIR    29     TE_peak        NR 0.5800000000
3072             Alu   246     TE_peak        NR 1.0000000000
3073             Alu   105     TE_peak        NR 0.3645833333
3074             Alu   132     TE_peak   LR_open 1.0000000000
3075             MIR   168     TE_peak   LR_open 1.0000000000
3076              L2    86     TE_peak   LR_open 1.0000000000
3077              L2   106     TE_peak   LR_open 1.0000000000
3078              L2     3     TE_peak   LR_open 0.0291262136
3079              L2   195     TE_peak        NR 0.5446927374
3080             MIR    95     TE_peak   LR_open 0.8189655172
3081   Simple_repeat    30     TE_peak   LR_open 1.0000000000
3082   Simple_repeat    67     TE_peak   LR_open 1.0000000000
3083   Simple_repeat    38     TE_peak   LR_open 1.0000000000
3084             MIR   145     TE_peak   LR_open 1.0000000000
3085             Alu   113     TE_peak   LR_open 0.3791946309
3086             MIR   150     TE_peak   LR_open 1.0000000000
3087      hAT-Tip100   171     TE_peak  LR_close 1.0000000000
3088             MIR    41     TE_peak        NR 0.3534482759
3089             MIR   164     TE_peak        NR 0.8039215686
3090       ERVL-MaLR   258     TE_peak        NR 0.7267605634
3091             MIR   192     TE_peak        NR 1.0000000000
3092            <NA>    NA not_TE_peak        NR           NA
3093             Alu    99     TE_peak   LR_open 0.3344594595
3094             Alu    87     TE_peak        NR 0.6170212766
3095              L1    68     TE_peak        NR 1.0000000000
3096              L2   247     TE_peak        NR 1.0000000000
3097            <NA>    NA not_TE_peak        NR           NA
3098            <NA>    NA not_TE_peak        NR           NA
3099              L2   401     TE_peak   not_mrc 0.6375198728
3100             Alu    45     TE_peak   not_mrc 0.6521739130
3101              L2   281     TE_peak        NR 0.8808777429
3102             MIR    51     TE_peak        NR 0.3517241379
3103  Low_complexity    40     TE_peak        NR 1.0000000000
3104             Alu   231     TE_peak        NR 1.0000000000
3105            <NA>    NA not_TE_peak        NR           NA
3106            <NA>    NA not_TE_peak  ESR_open           NA
3107             Alu   262     TE_peak        NR 0.9192982456
3108             MIR    79     TE_peak        NR 1.0000000000
3109     hAT-Charlie   217     TE_peak  LR_close 1.0000000000
3110       ERVL-MaLR   151     TE_peak  LR_close 0.3952879581
3111             Alu    27     TE_peak        NR 0.0912162162
3112    TcMar-Tigger    79     TE_peak        NR 1.0000000000
3113    TcMar-Tigger    82     TE_peak        NR 0.4019607843
3114             MIR    79     TE_peak        NR 0.4136125654
3115   Simple_repeat    32     TE_peak        NR 1.0000000000
3116   Simple_repeat    29     TE_peak        NR 1.0000000000
3117             MIR    25     TE_peak        NR 0.1953125000
3118            <NA>    NA not_TE_peak  ESR_open           NA
3119             Alu    30     TE_peak   LR_open 0.0958466454
3120             MIR     6     TE_peak   LR_open 0.0461538462
3121  Low_complexity    60     TE_peak  ESR_open 1.0000000000
3122             MIR   219     TE_peak        NR 1.0000000000
3123   Simple_repeat    65     TE_peak        NR 1.0000000000
3124              L2   116     TE_peak   LR_open 0.2648401826
3125       ERVL-MaLR    69     TE_peak        NR 0.6216216216
3126             MIR   149     TE_peak        NR 1.0000000000
3127            <NA>    NA not_TE_peak        NR           NA
3128             MIR    16     TE_peak  EAR_open 0.0680851064
3129             MIR   119     TE_peak  EAR_open 1.0000000000
3130              L2    68     TE_peak  EAR_open 1.0000000000
3131             Alu   186     TE_peak  EAR_open 0.5849056604
3132            ERV1   551     TE_peak  LR_close 0.6326061998
3133            ERV1    58     TE_peak  LR_close 1.0000000000
3134              L1    79     TE_peak  LR_close 0.8777777778
3135             Alu   317     TE_peak        NR 1.0000000000
3136             Alu    40     TE_peak        NR 0.1311475410
3137            <NA>    NA not_TE_peak   LR_open           NA
3138             MIR   129     TE_peak        NR 1.0000000000
3139             MIR    70     TE_peak        NR 1.0000000000
3140             Alu   212     TE_peak        NR 0.8907563025
3141           Gypsy    91     TE_peak        NR 0.5083798883
3142   Simple_repeat    38     TE_peak        NR 1.0000000000
3143   Simple_repeat    34     TE_peak        NR 1.0000000000
3144             Alu    54     TE_peak        NR 0.1794019934
3145     hAT-Charlie    17     TE_peak ESR_close 0.1240875912
3146             Alu    99     TE_peak ESR_close 0.3425605536
3147   Simple_repeat    32     TE_peak  LR_close 1.0000000000
3148             MIR    52     TE_peak  LR_close 0.4193548387
3149             Alu   131     TE_peak        NR 0.4337748344
3150             MIR     3     TE_peak   LR_open 0.0789473684
3151             Alu    71     TE_peak   LR_open 0.2398648649
3152              L2    53     TE_peak        NR 1.0000000000
3153             Alu   159     TE_peak   LR_open 0.5740072202
3154              L1   110     TE_peak   LR_open 1.0000000000
3155             Alu    52     TE_peak   LR_open 0.1918819188
3156   Simple_repeat    35     TE_peak        NR 1.0000000000
3157            <NA>    NA not_TE_peak   LR_open           NA
3158       ERVL-MaLR   230     TE_peak   LR_open 0.5778894472
3159              L2   119     TE_peak   LR_open 1.0000000000
3160             Alu   153     TE_peak   LR_open 0.5239726027
3161              L2   121     TE_peak   LR_open 1.0000000000
3162              L2   132     TE_peak   LR_open 0.2894736842
3163            <NA>    NA not_TE_peak        NR           NA
3164              L2    52     TE_peak        NR 0.6582278481
3165             MIR    87     TE_peak        NR 1.0000000000
3166            ERV1   120     TE_peak   LR_open 0.2558635394
3167   Simple_repeat    28     TE_peak   LR_open 1.0000000000
3168            ERV1   132     TE_peak   LR_open 1.0000000000
3169             Alu    29     TE_peak        NR 0.1066176471
3170              L1    43     TE_peak        NR 1.0000000000
3171             Alu   280     TE_peak        NR 0.9271523179
3172             MIR   149     TE_peak        NR 1.0000000000
3173             Alu   124     TE_peak        NR 1.0000000000
3174             Alu    43     TE_peak        NR 1.0000000000
3175      hAT-Tip100    11     TE_peak        NR 0.1506849315
3176             Alu   248     TE_peak  EAR_open 0.8435374150
3177     hAT-Charlie    56     TE_peak  LR_close 0.2629107981
3178              L2   310     TE_peak ESR_close 1.0000000000
3179             MIR    55     TE_peak        NR 0.5612244898
3180             MIR    89     TE_peak        NR 1.0000000000
3181  Low_complexity    66     TE_peak        NR 1.0000000000
3182   Simple_repeat    59     TE_peak        NR 1.0000000000
3183            <NA>    NA not_TE_peak        NR           NA
3184             MIR    12     TE_peak   LR_open 0.0710059172
3185             MIR   126     TE_peak   LR_open 1.0000000000
3186              L2   101     TE_peak   LR_open 0.7537313433
3187            ERVL   112     TE_peak ESR_close 0.3404255319
3188             Alu   113     TE_peak   LR_open 0.3937282230
3189            <NA>    NA not_TE_peak        NR           NA
3190             MIR    84     TE_peak   LR_open 1.0000000000
3191             MIR   150     TE_peak   LR_open 1.0000000000
3192             Alu    58     TE_peak        NR 0.1952861953
3193              L2   354     TE_peak        NR 0.9267015707
3194              L1   159     TE_peak        NR 1.0000000000
3195              L2    82     TE_peak        NR 1.0000000000
3196             Alu    79     TE_peak        NR 1.0000000000
3197            ERV1   204     TE_peak        NR 1.0000000000
3198            ERV1   483     TE_peak        NR 1.0000000000
3199            ERV1    96     TE_peak        NR 0.7384615385
3200             MIR     7     TE_peak   LR_open 0.0648148148
3201   Simple_repeat    30     TE_peak        NR 1.0000000000
3202   Simple_repeat    19     TE_peak        NR 1.0000000000
3203              L2    47     TE_peak   LR_open 1.0000000000
3204             MIR    40     TE_peak   LR_open 1.0000000000
3205             Alu   210     TE_peak   LR_open 0.6752411576
3206             MIR    19     TE_peak        NR 0.1357142857
3207            <NA>    NA not_TE_peak        NR           NA
3208   Simple_repeat    29     TE_peak ESR_close 1.0000000000
3209              L2   295     TE_peak   not_mrc 0.4275362319
3210             MIR   232     TE_peak        NR 1.0000000000
3211              L2   232     TE_peak        NR 0.7204968944
3212   Simple_repeat    28     TE_peak   LR_open 1.0000000000
3213             MIR   102     TE_peak   LR_open 1.0000000000
3214           RTE-X   214     TE_peak        NR 1.0000000000
3215             MIR    56     TE_peak        NR 0.2178988327
3216             MIR    28     TE_peak   LR_open 0.1171548117
3217      hAT-Tip100    58     TE_peak        NR 1.0000000000
3218            <NA>    NA not_TE_peak   LR_open           NA
3219            <NA>    NA not_TE_peak        NR           NA
3220     hAT-Charlie    51     TE_peak        NR 0.3311688312
3221              L1   214     TE_peak        NR 1.0000000000
3222     hAT-Charlie    58     TE_peak        NR 1.0000000000
3223             MIR    55     TE_peak        NR 0.2696078431
3224      hAT-Tip100    43     TE_peak        NR 1.0000000000
3225      hAT-Tip100    44     TE_peak        NR 1.0000000000
3226             MIR   128     TE_peak    ESR_OC 1.0000000000
3227             Alu   171     TE_peak    ESR_OC 1.0000000000
3228   Simple_repeat    47     TE_peak EAR_close 1.0000000000
3229             MIR    25     TE_peak EAR_close 0.4098360656
3230             MIR    37     TE_peak        NR 0.2312500000
3231       5S-Deu-L2   131     TE_peak   LR_open 0.6968085106
3232             MIR    29     TE_peak        NR 0.1666666667
3233             MIR   198     TE_peak        NR 1.0000000000
3234              L2    39     TE_peak        NR 1.0000000000
3235             MIR   193     TE_peak        NR 1.0000000000
3236            <NA>    NA not_TE_peak        NR           NA
3237            ERVL   392     TE_peak        NR 0.9560975610
3238              L1   235     TE_peak        NR 0.1368666278
3239    TcMar-Tigger   330     TE_peak   LR_open 0.4545454545
3240            <NA>    NA not_TE_peak        NR           NA
3241            <NA>    NA not_TE_peak        NR           NA
3242            <NA>    NA not_TE_peak        NR           NA
3243              L2    26     TE_peak        NR 0.4727272727
3244            <NA>    NA not_TE_peak        NR           NA
3245             MIR    28     TE_peak        NR 0.4179104478
3246             Alu    85     TE_peak        NR 1.0000000000
3247              L2    34     TE_peak        NR 0.4657534247
3248             MIR    81     TE_peak  LR_close 1.0000000000
3249            ERV1   175     TE_peak  LR_close 1.0000000000
3250             Alu   285     TE_peak  LR_close 1.0000000000
3251   Simple_repeat    45     TE_peak  LR_close 1.0000000000
3252            ERV1   208     TE_peak  LR_close 0.4351464435
3253     hAT-Charlie   185     TE_peak ESR_close 1.0000000000
3254     hAT-Charlie   120     TE_peak        NR 1.0000000000
3255    TcMar-Tigger   185     TE_peak        NR 0.3432282004
3256            <NA>    NA not_TE_peak        NR           NA
3257  Low_complexity    96     TE_peak        NR 1.0000000000
3258   Simple_repeat    54     TE_peak        NR 1.0000000000
3259   Simple_repeat    25     TE_peak        NR 1.0000000000
3260   Simple_repeat    24     TE_peak        NR 1.0000000000
3261    TcMar-Tigger   136     TE_peak        NR 0.4444444444
3262             Alu   209     TE_peak EAR_close 0.6852459016
3263            <NA>    NA not_TE_peak        NR           NA
3264              L2    38     TE_peak        NR 0.4418604651
3265            <NA>    NA not_TE_peak  LR_close           NA
3266            <NA>    NA not_TE_peak ESR_close           NA
3267             MIR    76     TE_peak        NR 0.4293785311
3268             CR1   197     TE_peak        NR 1.0000000000
3269      hAT-Tip100    40     TE_peak        NR 1.0000000000
3270             Alu    58     TE_peak        NR 0.1933333333
3271              L2    61     TE_peak        NR 0.4692307692
3272             Alu    88     TE_peak        NR 0.7333333333
3273            <NA>    NA not_TE_peak        NR           NA
3274             Alu   180     TE_peak        NR 0.6228373702
3275   Simple_repeat    45     TE_peak        NR 1.0000000000
3276            <NA>    NA not_TE_peak        NR           NA
3277              L2   124     TE_peak   LR_open 1.0000000000
3278   Simple_repeat    15     TE_peak   LR_open 0.6521739130
3279             Alu   262     TE_peak        NR 0.9065743945
3280            ERV1   228     TE_peak        NR 1.0000000000
3281     hAT-Charlie   155     TE_peak        NR 0.7711442786
3282             MIR    58     TE_peak        NR 0.3068783069
3283       TcMar-Tc2    85     TE_peak        NR 1.0000000000
3284             CR1    99     TE_peak        NR 1.0000000000
3285             MIR   123     TE_peak  LR_close 0.7592592593
3286             MIR   251     TE_peak  LR_close 1.0000000000
3287             Alu   111     TE_peak  LR_close 0.7350993377
3288            <NA>    NA not_TE_peak  LR_close           NA
3289             Alu   308     TE_peak ESR_close 1.0000000000
3290             MIR   146     TE_peak ESR_close 1.0000000000
3291             MIR    22     TE_peak ESR_close 0.1496598639
3292  Low_complexity     3     TE_peak        NR 0.0681818182
3293             Alu   167     TE_peak        NR 0.5511551155
3294      hAT-Tip100   127     TE_peak   LR_open 1.0000000000
3295             MIR   141     TE_peak   LR_open 1.0000000000
3296             Alu   115     TE_peak        NR 0.3846153846
3297             Alu   295     TE_peak        NR 1.0000000000
3298            <NA>    NA not_TE_peak        NR           NA
3299       ERVL-MaLR    87     TE_peak        NR 0.2142857143
3300              L2   206     TE_peak        NR 1.0000000000
3301             MIR    91     TE_peak        NR 0.4892473118
3302             Alu    62     TE_peak        NR 0.2198581560
3303            <NA>    NA not_TE_peak  EAR_open           NA
3304              L2   364     TE_peak        NR 0.9405684755
3305   Simple_repeat    26     TE_peak        NR 1.0000000000
3306   Simple_repeat    37     TE_peak        NR 0.7115384615
3307              L2    47     TE_peak EAR_close 0.1015118790
3308   Simple_repeat    70     TE_peak        NR 1.0000000000
3309   Simple_repeat    29     TE_peak        NR 1.0000000000
3310              L2    59     TE_peak        NR 1.0000000000
3311             MIR    53     TE_peak        NR 0.5638297872
3312             Alu   183     TE_peak  LR_close 0.6421052632
3313              L1   419     TE_peak  ESR_open 0.4415173867
3314   Simple_repeat   170     TE_peak        NR 0.6800000000
3315            <NA>    NA not_TE_peak        NR           NA
3316              L1    39     TE_peak        NR 0.0898617512
3317             Alu   189     TE_peak        NR 0.6217105263
3318             Alu    84     TE_peak        NR 0.7058823529
3319             CR1    85     TE_peak  LR_close 1.0000000000
3320              L2    12     TE_peak        NR 0.2608695652
3321             MIR   121     TE_peak        NR 1.0000000000
3322             MIR    27     TE_peak        NR 0.2142857143
3323   Simple_repeat    17     TE_peak   LR_open 1.0000000000
3324            <NA>    NA not_TE_peak  LR_close           NA
3325             MIR   115     TE_peak   not_mrc 1.0000000000
3326             MIR   169     TE_peak   not_mrc 1.0000000000
3327             MIR    52     TE_peak  ESR_open 0.3229813665
3328             MIR   120     TE_peak  ESR_open 1.0000000000
3329     hAT-Charlie    47     TE_peak   LR_open 0.4272727273
3330             MIR    66     TE_peak   LR_open 0.7674418605
3331            <NA>    NA not_TE_peak EAR_close           NA
3332             MIR   168     TE_peak ESR_close 1.0000000000
3333             MIR   114     TE_peak ESR_close 1.0000000000
3334    TcMar-Tigger   282     TE_peak ESR_close 0.3676662321
3335              L2    45     TE_peak        NR 0.3913043478
3336             MIR   224     TE_peak        NR 1.0000000000
3337   Simple_repeat    87     TE_peak        NR 1.0000000000
3338            ERV1   487     TE_peak   LR_open 0.3333333333
3339             MIR   145     TE_peak        NR 1.0000000000
3340             MIR   142     TE_peak   LR_open 1.0000000000
3341             MIR    94     TE_peak   LR_open 1.0000000000
3342     hAT-Charlie   108     TE_peak   LR_open 0.5046728972
3343              L1   199     TE_peak   LR_open 0.9004524887
3344             MIR   133     TE_peak        NR 0.8926174497
3345            <NA>    NA not_TE_peak        NR           NA
3346            ERVL   296     TE_peak  LR_close 0.7201946472
3347      hAT-Tip100    10     TE_peak  LR_close 0.1204819277
3348      hAT-Tip100     4     TE_peak        NR 0.0281690141
3349            ERVL   198     TE_peak        NR 0.6449511401
3350            <NA>    NA not_TE_peak        NR           NA
3351            <NA>    NA not_TE_peak   LR_open           NA
3352  Low_complexity    40     TE_peak ESR_close 1.0000000000
3353             Alu   144     TE_peak   LR_open 0.9411764706
3354     hAT-Charlie    54     TE_peak  EAR_open 0.3375000000
3355            ERV1   664     TE_peak  EAR_open 0.9083447332
3356             Alu    98     TE_peak  LR_close 1.0000000000
3357  Low_complexity    52     TE_peak        NR 1.0000000000
3358            <NA>    NA not_TE_peak        NR           NA
3359     hAT-Charlie   275     TE_peak        NR 0.5705394191
3360             Alu    42     TE_peak        NR 0.1414141414
3361             MIR    74     TE_peak        NR 1.0000000000
3362              L2   144     TE_peak        NR 1.0000000000
3363             Alu   150     TE_peak        NR 0.5208333333
3364            <NA>    NA not_TE_peak  LR_close           NA
3365   Simple_repeat    42     TE_peak  LR_close 1.0000000000
3366              L2   226     TE_peak  LR_close 1.0000000000
3367   Simple_repeat    40     TE_peak  LR_close 1.0000000000
3368             Alu    35     TE_peak  LR_close 0.2243589744
3369             Alu   220     TE_peak   LR_open 0.7284768212
3370    TcMar-Tigger    38     TE_peak   LR_open 1.0000000000
3371             Alu   212     TE_peak   LR_open 0.7043189369
3372            <NA>    NA not_TE_peak  EAR_open           NA
3373              L2   249     TE_peak  ESR_open 0.9087591241
3374             Alu   267     TE_peak  ESR_open 0.9335664336
3375             Alu   302     TE_peak   LR_open 1.0000000000
3376            <NA>    NA not_TE_peak   LR_open           NA
3377             MIR    68     TE_peak        NR 1.0000000000
3378  Low_complexity    34     TE_peak        NR 1.0000000000
3379             Alu   169     TE_peak        NR 0.5487012987
3380             Alu   115     TE_peak   LR_open 0.3820598007
3381            <NA>    NA not_TE_peak  LR_close           NA
3382             MIR   194     TE_peak  LR_close 0.8016528926
3383   Simple_repeat    53     TE_peak        NR 0.7162162162
3384   Simple_repeat    56     TE_peak        NR 1.0000000000
3385  Low_complexity    49     TE_peak        NR 1.0000000000
3386     hAT-Charlie    34     TE_peak   LR_open 0.2179487179
3387            <NA>    NA not_TE_peak        NR           NA
3388             Alu   204     TE_peak ESR_close 0.6538461538
3389     hAT-Charlie    29     TE_peak        NR 0.1542553191
3390      hAT-Tip100    69     TE_peak        NR 1.0000000000
3391              L2   269     TE_peak   LR_open 1.0000000000
3392             MIR   169     TE_peak   LR_open 0.7971698113
3393              L2   117     TE_peak  LR_close 0.2577092511
3394              L2   514     TE_peak  LR_close 0.9846743295
3395             MIR    88     TE_peak EAR_close 1.0000000000
3396     hAT-Charlie    49     TE_peak EAR_close 0.3475177305
3397     hAT-Charlie   169     TE_peak  LR_close 1.0000000000
3398             Alu     9     TE_peak  LR_close 0.0291262136
3399              L1   299     TE_peak        NR 0.0488402483
3400             MIR    86     TE_peak        NR 0.6417910448
3401             MIR    64     TE_peak        NR 0.9552238806
3402             MIR    37     TE_peak        NR 0.6065573770
3403   Simple_repeat    32     TE_peak        NR 1.0000000000
3404   Simple_repeat    39     TE_peak        NR 1.0000000000
3405             MIR   221     TE_peak        NR 1.0000000000
3406              L2    31     TE_peak        NR 0.1565656566
3407            <NA>    NA not_TE_peak   not_mrc           NA
3408             MIR   134     TE_peak        NR 1.0000000000
3409            <NA>    NA not_TE_peak        NR           NA
3410            <NA>    NA not_TE_peak   LR_open           NA
3411             MIR   117     TE_peak        NR 0.8013698630
3412            <NA>    NA not_TE_peak        NR           NA
3413   Simple_repeat   126     TE_peak        NR 1.0000000000
3414            ERVK   643     TE_peak   LR_open 0.6642561983
3415            ERVL    55     TE_peak        NR 0.8208955224
3416              L2    62     TE_peak        NR 0.9117647059
3417             Alu    48     TE_peak        NR 0.1548387097
3418     hAT-Charlie    67     TE_peak        NR 1.0000000000
3419       ERVL-MaLR   350     TE_peak        NR 0.9859154930
3420   Simple_repeat   162     TE_peak  LR_close 1.0000000000
3421            ERV1   494     TE_peak  LR_close 0.8111658456
3422            <NA>    NA not_TE_peak        NR           NA
3423            <NA>    NA not_TE_peak EAR_close           NA
3424            <NA>    NA not_TE_peak        NR           NA
3425            <NA>    NA not_TE_peak        NR           NA
3426            <NA>    NA not_TE_peak        NR           NA
3427              L2   110     TE_peak        NR 0.4198473282
3428              L2   349     TE_peak ESR_close 1.0000000000
3429             MIR    11     TE_peak ESR_close 1.0000000000
3430             MIR    11     TE_peak ESR_close 0.0533980583
3431              L2     9     TE_peak        NR 0.0297029703
3432             MIR   138     TE_peak  LR_close 1.0000000000
3433              L2    16     TE_peak  LR_close 0.1739130435
3434            <NA>    NA not_TE_peak        NR           NA
3435             MIR    71     TE_peak   LR_open 0.4896551724
3436   Simple_repeat    31     TE_peak   LR_open 1.0000000000
3437             MIR    37     TE_peak   LR_open 0.1753554502
3438              L2   235     TE_peak   LR_open 0.9915611814
3439             Alu     7     TE_peak   LR_open 0.0237288136
3440   Simple_repeat    28     TE_peak        NR 1.0000000000
3441            ERV1   373     TE_peak EAR_close 0.6114754098
3442             Alu    21     TE_peak EAR_close 0.0707070707
3443             MIR    29     TE_peak ESR_close 0.2283464567
3444             MIR    85     TE_peak ESR_close 1.0000000000
3445       ERVL-MaLR   182     TE_peak ESR_close 0.5098039216
3446             MIR   103     TE_peak  LR_close 1.0000000000
3447             Alu   263     TE_peak  LR_close 0.8651315789
3448             MIR    92     TE_peak   not_mrc 1.0000000000
3449    TcMar-Tigger   166     TE_peak   not_mrc 1.0000000000
3450   Simple_repeat    48     TE_peak   not_mrc 1.0000000000
3451    TcMar-Tigger   134     TE_peak   not_mrc 1.0000000000
3452             MIR    13     TE_peak  LR_close 0.0673575130
3453            <NA>    NA not_TE_peak ESR_close           NA
3454             MIR   159     TE_peak  ESR_open 1.0000000000
3455   Simple_repeat   584     TE_peak   LR_open 0.2576091751
3456             MIR   101     TE_peak ESR_close 0.8559322034
3457              L2   284     TE_peak   LR_open 0.5904365904
3458            <NA>    NA not_TE_peak        NR           NA
3459            <NA>    NA not_TE_peak   LR_open           NA
3460             MIR   181     TE_peak ESR_close 0.6557971014
3461              L2   313     TE_peak ESR_close 1.0000000000
3462   Simple_repeat    27     TE_peak   LR_open 1.0000000000
3463              L2   173     TE_peak        NR 1.0000000000
3464             Alu    38     TE_peak        NR 0.1279461279
3465   Simple_repeat    83     TE_peak        NR 1.0000000000
3466              L2    40     TE_peak   LR_open 0.0821355236
3467   Simple_repeat   198     TE_peak        NR 1.0000000000
3468             CR1    61     TE_peak        NR 1.0000000000
3469             MIR    59     TE_peak        NR 0.4041095890
3470              L2    88     TE_peak        NR 1.0000000000
3471             MIR   208     TE_peak        NR 1.0000000000
3472             MIR    32     TE_peak        NR 0.2000000000
3473      hAT-Tip100    47     TE_peak        NR 0.2797619048
3474   Simple_repeat    43     TE_peak        NR 1.0000000000
3475             MIR    97     TE_peak        NR 1.0000000000
3476            <NA>    NA not_TE_peak        NR           NA
3477    TcMar-Tigger   364     TE_peak        NR 0.3382899628
3478             Alu   151     TE_peak        NR 0.5261324042
3479              L2   108     TE_peak        NR 0.5966850829
3480            ERVL   174     TE_peak        NR 0.3068783069
3481             MIR    17     TE_peak        NR 0.0890052356
3482   Simple_repeat    42     TE_peak        NR 1.0000000000
3483   Simple_repeat    22     TE_peak        NR 1.0000000000
3484            <NA>    NA not_TE_peak        NR           NA
3485             MIR    14     TE_peak  LR_close 0.1386138614
3486            ERVK   318     TE_peak   LR_open 0.7004405286
3487             Alu   114     TE_peak        NR 0.4160583942
3488   Simple_repeat    21     TE_peak        NR 1.0000000000
3489             MIR   129     TE_peak        NR 1.0000000000
3490             Alu   149     TE_peak        NR 0.5209790210
3491     hAT-Charlie   288     TE_peak        NR 1.0000000000
3492   Simple_repeat    24     TE_peak  LR_close 1.0000000000
3493            <NA>    NA not_TE_peak  LR_close           NA
3494              L1   225     TE_peak        NR 0.8964143426
3495      hAT-Tip100   133     TE_peak  LR_close 0.4079754601
3496      hAT-Tip100   240     TE_peak  LR_close 1.0000000000
3497             MIR    72     TE_peak  LR_close 0.7200000000
3498            <NA>    NA not_TE_peak  LR_close           NA
3499             MIR    23     TE_peak        NR 0.2053571429
3500             MIR    85     TE_peak        NR 0.5089820359
3501    TcMar-Tigger   148     TE_peak        NR 0.3457943925
3502       ERVL-MaLR   222     TE_peak        NR 0.7025316456
3503             MIR   112     TE_peak ESR_close 1.0000000000
3504             Alu    38     TE_peak ESR_close 0.1301369863
3505             Alu    54     TE_peak        NR 0.4354838710
3506   Simple_repeat    31     TE_peak        NR 1.0000000000
3507             MIR   169     TE_peak        NR 1.0000000000
3508             MIR   116     TE_peak  ESR_open 0.5110132159
3509            <NA>    NA not_TE_peak        NR           NA
3510            ERV1   279     TE_peak ESR_close 0.7664835165
3511            ERV1   118     TE_peak        NR 0.7866666667
3512            ERVL   345     TE_peak        NR 1.0000000000
3513              L2     2     TE_peak        NR 0.0100502513
3514             MIR   106     TE_peak  EAR_open 1.0000000000
3515             MIR   223     TE_peak  EAR_open 1.0000000000
3516             Alu    17     TE_peak ESR_close 0.1338582677
3517              L2    37     TE_peak        NR 0.4512195122
3518              L2   258     TE_peak        NR 1.0000000000
3519             MIR    18     TE_peak ESR_close 0.0967741935
3520             MIR    15     TE_peak ESR_close 0.0862068966
3521              L2   122     TE_peak        NR 1.0000000000
3522            <NA>    NA not_TE_peak ESR_close           NA
3523   Simple_repeat    72     TE_peak        NR 1.0000000000
3524            ERVL   170     TE_peak        NR 0.6227106227
3525            <NA>    NA not_TE_peak   LR_open           NA
3526            <NA>    NA not_TE_peak EAR_close           NA
3527             MIR    64     TE_peak        NR 0.3137254902
3528             MIR   180     TE_peak        NR 1.0000000000
3529  Low_complexity    41     TE_peak        NR 1.0000000000
3530              L2   138     TE_peak        NR 1.0000000000
3531             Alu    33     TE_peak        NR 0.4342105263
3532            <NA>    NA not_TE_peak        NR           NA
3533            <NA>    NA not_TE_peak        NR           NA
3534            ERV1   351     TE_peak        NR 0.6093750000
3535             MIR    66     TE_peak        NR 1.0000000000
3536             MIR   217     TE_peak        NR 1.0000000000
3537            LTR?    79     TE_peak   LR_open 0.2841726619
3538      hAT-Tip100    64     TE_peak  EAR_open 1.0000000000
3539              L1    90     TE_peak  EAR_open 1.0000000000
3540              L2   275     TE_peak  EAR_open 1.0000000000
3541     hAT-Tip100?    61     TE_peak EAR_close 1.0000000000
3542              L1    96     TE_peak EAR_close 1.0000000000
3543             Alu    84     TE_peak EAR_close 0.2754098361
3544             Alu    30     TE_peak  EAR_open 0.0983606557
3545   Simple_repeat    40     TE_peak  EAR_open 1.0000000000
3546             MIR   180     TE_peak  EAR_open 1.0000000000
3547             MIR   151     TE_peak  EAR_open 1.0000000000
3548              L1    59     TE_peak  EAR_open 0.2669683258
3549   Simple_repeat    33     TE_peak        NR 1.0000000000
3550   Simple_repeat    47     TE_peak        NR 1.0000000000
3551   Simple_repeat    36     TE_peak        NR 1.0000000000
3552            <NA>    NA not_TE_peak   LR_open           NA
3553            <NA>    NA not_TE_peak        NR           NA
3554             MIR   147     TE_peak        NR 0.7538461538
3555             MIR   159     TE_peak        NR 1.0000000000
3556            ERVL   194     TE_peak        NR 0.9065420561
3557            <NA>    NA not_TE_peak ESR_close           NA
3558            <NA>    NA not_TE_peak        NR           NA
3559   Simple_repeat    56     TE_peak        NR 1.0000000000
3560             MIR    71     TE_peak        NR 0.6698113208
3561   Simple_repeat    85     TE_peak        NR 1.0000000000
3562   Simple_repeat    40     TE_peak        NR 1.0000000000
3563     hAT-Charlie    15     TE_peak        NR 0.1500000000
3564             MIR   187     TE_peak        NR 1.0000000000
3565             MIR   116     TE_peak   LR_open 0.8923076923
3566            <NA>    NA not_TE_peak ESR_close           NA
3567             MIR    66     TE_peak        NR 0.8148148148
3568            <NA>    NA not_TE_peak  LR_close           NA
3569            <NA>    NA not_TE_peak        NR           NA
3570              L2   267     TE_peak        NR 1.0000000000
3571     hAT-Charlie   140     TE_peak        NR 0.6796116505
3572            <NA>    NA not_TE_peak        NR           NA
3573            <NA>    NA not_TE_peak        NR           NA
3574   Simple_repeat    22     TE_peak        NR 1.0000000000
3575   Simple_repeat    26     TE_peak        NR 1.0000000000
3576   Simple_repeat    33     TE_peak        NR 1.0000000000
3577            <NA>    NA not_TE_peak        NR           NA
3578   Simple_repeat    25     TE_peak        NR 1.0000000000
3579              L2   265     TE_peak        NR 1.0000000000
3580              L1   140     TE_peak   LR_open 0.6008583691
3581   Simple_repeat    54     TE_peak        NR 1.0000000000
3582            <NA>    NA not_TE_peak   LR_open           NA
3583   Simple_repeat     9     TE_peak        NR 0.2571428571
3584             CR1   160     TE_peak        NR 1.0000000000
3585   Simple_repeat    25     TE_peak        NR 0.1024590164
3586          srpRNA    30     TE_peak        NR 0.6382978723
3587     hAT-Charlie    66     TE_peak        NR 1.0000000000
3588             MIR     7     TE_peak        NR 0.0603448276
3589            <NA>    NA not_TE_peak   LR_open           NA
3590             Alu    32     TE_peak   not_mrc 0.4266666667
3591              L2    60     TE_peak   not_mrc 1.0000000000
3592              L2    63     TE_peak        NR 0.3727810651
3593             Alu    31     TE_peak   not_mrc 0.1013071895
3594             MIR    63     TE_peak   not_mrc 0.4701492537
3595             Alu   129     TE_peak   LR_open 0.4229508197
3596              L2   176     TE_peak   LR_open 1.0000000000
3597             Alu   287     TE_peak        NR 0.9379084967
3598             Alu    12     TE_peak        NR 0.0375000000
3599            <NA>    NA not_TE_peak        NR           NA
3600            <NA>    NA not_TE_peak        NR           NA
3601            <NA>    NA not_TE_peak        NR           NA
3602             MIR    44     TE_peak        NR 0.2699386503
3603            <NA>    NA not_TE_peak        NR           NA
3604   Simple_repeat    26     TE_peak   LR_open 0.5531914894
3605   Simple_repeat    47     TE_peak        NR 1.0000000000
3606            <NA>    NA not_TE_peak        NR           NA
3607    TcMar-Tigger   357     TE_peak        NR 0.9494680851
3608             Alu   139     TE_peak        NR 1.0000000000
3609             Alu    72     TE_peak        NR 0.2457337884
3610             Alu    53     TE_peak        NR 0.1766666667
3611              L2   229     TE_peak        NR 0.6505681818
3612   Simple_repeat    61     TE_peak        NR 1.0000000000
3613            <NA>    NA not_TE_peak        NR           NA
3614   Simple_repeat     6     TE_peak        NR 1.0000000000
3615   Simple_repeat    32     TE_peak        NR 1.0000000000
3616   Simple_repeat    11     TE_peak        NR 1.0000000000
3617             MIR    45     TE_peak        NR 0.9574468085
3618             Alu   116     TE_peak        NR 0.3945578231
3619            ERV1   222     TE_peak        NR 1.0000000000
3620             Alu    69     TE_peak        NR 0.2277227723
3621            ERV1    26     TE_peak        NR 0.0682414698
3622            ERV1   256     TE_peak        NR 1.0000000000
3623            ERV1   188     TE_peak        NR 1.0000000000
3624             Alu    92     TE_peak        NR 0.6344827586
3625              L1    37     TE_peak   LR_open 0.5781250000
3626              L1    46     TE_peak        NR 0.2705882353
3627             Alu   307     TE_peak        NR 1.0000000000
3628              L1    50     TE_peak        NR 0.4629629630
3629            <NA>    NA not_TE_peak ESR_close           NA
3630   Simple_repeat    22     TE_peak        NR 1.0000000000
3631             Alu    83     TE_peak        NR 0.5804195804
3632             Alu    90     TE_peak        NR 0.2903225806
3633            <NA>    NA not_TE_peak        NR           NA
3634   Simple_repeat    28     TE_peak        NR 1.0000000000
3635   Simple_repeat    65     TE_peak        NR 1.0000000000
3636   Simple_repeat    55     TE_peak        NR 1.0000000000
3637   Simple_repeat    40     TE_peak  EAR_open 1.0000000000
3638   Simple_repeat    46     TE_peak  EAR_open 1.0000000000
3639   Simple_repeat    31     TE_peak  EAR_open 1.0000000000
3640   Simple_repeat    36     TE_peak  EAR_open 1.0000000000
3641            <NA>    NA not_TE_peak        NR           NA
3642            <NA>    NA not_TE_peak   LR_open           NA
3643            <NA>    NA not_TE_peak  LR_close           NA
3644            <NA>    NA not_TE_peak        NR           NA
3645            <NA>    NA not_TE_peak  ESR_open           NA
3646            <NA>    NA not_TE_peak        NR           NA
3647            <NA>    NA not_TE_peak ESR_close           NA
3648  Low_complexity    28     TE_peak   LR_open 1.0000000000
3649            <NA>    NA not_TE_peak EAR_close           NA
3650            <NA>    NA not_TE_peak        NR           NA
3651              L2   326     TE_peak  ESR_open 0.3630289532
3652            <NA>    NA not_TE_peak        NR           NA
3653            <NA>    NA not_TE_peak        NR           NA
3654              L2    83     TE_peak        NR 1.0000000000
3655        RTE-BovB    70     TE_peak        NR 1.0000000000
3656             MIR    10     TE_peak        NR 0.0970873786
3657            <NA>    NA not_TE_peak   LR_open           NA
3658            <NA>    NA not_TE_peak        NR           NA
3659       ERVL-MaLR   237     TE_peak        NR 0.9257812500
3660             Alu    77     TE_peak        NR 1.0000000000
3661             Alu   178     TE_peak        NR 0.6742424242
3662             Alu    80     TE_peak        NR 0.2580645161
3663            ERVL   178     TE_peak        NR 1.0000000000
3664             Alu   110     TE_peak        NR 0.3754266212
3665       ERVL-MaLR    58     TE_peak   LR_open 0.3536585366
3666       ERVL-MaLR   199     TE_peak   LR_open 0.9754901961
3667              L2    61     TE_peak        NR 1.0000000000
3668   Simple_repeat    76     TE_peak        NR 1.0000000000
3669   Simple_repeat    33     TE_peak        NR 1.0000000000
3670   Simple_repeat    31     TE_peak        NR 1.0000000000
3671            <NA>    NA not_TE_peak        NR           NA
3672              L2    53     TE_peak        NR 0.7910447761
3673            <NA>    NA not_TE_peak        NR           NA
3674             MIR    38     TE_peak        NR 0.3089430894
3675            <NA>    NA not_TE_peak   LR_open           NA
3676             Alu   138     TE_peak        NR 0.4758620690
3677     hAT-Charlie    76     TE_peak        NR 1.0000000000
3678             Alu   266     TE_peak        NR 0.9236111111
3679            <NA>    NA not_TE_peak   LR_open           NA
3680             MIR    70     TE_peak        NR 0.5785123967
3681            <NA>    NA not_TE_peak        NR           NA
3682              L2    17     TE_peak   LR_open 0.0398126464
3683             Alu   124     TE_peak   LR_open 0.4217687075
3684            <NA>    NA not_TE_peak  LR_close           NA
3685      hAT-Tip100    12     TE_peak        NR 0.0740740741
3686             MIR   107     TE_peak        NR 0.8842975207
3687            <NA>    NA not_TE_peak EAR_close           NA
3688             Alu    62     TE_peak   LR_open 0.2032786885
3689             Alu    94     TE_peak   LR_open 0.4051724138
3690            <NA>    NA not_TE_peak        NR           NA
3691              L2    76     TE_peak        NR 0.2968750000
3692              L1   107     TE_peak   LR_open 0.2899728997
3693              L2     7     TE_peak  LR_close 0.0472972973
3694             MIR   109     TE_peak  LR_close 1.0000000000
3695             Alu   120     TE_peak  LR_close 0.3896103896
3696            <NA>    NA not_TE_peak        NR           NA
3697              L2   174     TE_peak   LR_open 0.7767857143
3698             MIR   146     TE_peak   LR_open 1.0000000000
3699             MIR    13     TE_peak   LR_open 0.1733333333
3700             MIR   126     TE_peak        NR 1.0000000000
3701   Simple_repeat    26     TE_peak        NR 1.0000000000
3702   Simple_repeat    41     TE_peak        NR 1.0000000000
3703            <NA>    NA not_TE_peak        NR           NA
3704            <NA>    NA not_TE_peak        NR           NA
3705             Alu   134     TE_peak        NR 0.6380952381
3706            <NA>    NA not_TE_peak ESR_close           NA
3707             MIR    46     TE_peak        NR 0.5287356322
3708              L2   171     TE_peak        NR 0.6551724138
3709   Simple_repeat    29     TE_peak        NR 1.0000000000
3710             MIR    93     TE_peak        NR 1.0000000000
3711             Alu     3     TE_peak        NR 0.0096774194
3712              L2   456     TE_peak        NR 0.6898638427
3713            ERV1   174     TE_peak        NR 1.0000000000
3714            ERV1     1     TE_peak        NR 0.0032894737
3715              L2   368     TE_peak        NR 0.4057331863
3716   Simple_repeat    47     TE_peak        NR 1.0000000000
3717             Alu     3     TE_peak        NR 0.0103448276
3718             MIR   123     TE_peak        NR 1.0000000000
3719            <NA>    NA not_TE_peak        NR           NA
3720             Alu   310     TE_peak   LR_open 0.9841269841
3721            ERVL    44     TE_peak   LR_open 0.1182795699
3722            ERVL   120     TE_peak   LR_open 1.0000000000
3723             Alu    68     TE_peak        NR 0.2369337979
3724            ERVL   152     TE_peak        NR 1.0000000000
3725       ERVL-MaLR    70     TE_peak  ESR_open 0.1254480287
3726   Simple_repeat   589     TE_peak  ESR_open 1.0000000000
3727             MIR    11     TE_peak  ESR_open 1.0000000000
3728             Alu    40     TE_peak  ESR_open 0.1433691756
3729            ERVL   496     TE_peak        NR 0.5720876586
3730    TcMar-Tigger   156     TE_peak  LR_close 0.9285714286
3731  Low_complexity    28     TE_peak ESR_close 1.0000000000
3732   Simple_repeat     3     TE_peak ESR_close 0.0375000000
3733            <NA>    NA not_TE_peak   not_mrc           NA
3734   Simple_repeat    35     TE_peak        NR 1.0000000000
3735             MIR    47     TE_peak  EAR_open 1.0000000000
3736             MIR    89     TE_peak        NR 1.0000000000
3737             MIR     3     TE_peak        NR 0.0545454545
3738             MIR   100     TE_peak   LR_open 0.6711409396
3739              L2    79     TE_peak   LR_open 1.0000000000
3740             MIR   118     TE_peak   LR_open 1.0000000000
3741   Simple_repeat    44     TE_peak   LR_open 1.0000000000
3742  Low_complexity    34     TE_peak   not_mrc 1.0000000000
3743             MIR    68     TE_peak ESR_close 0.7640449438
3744             MIR   205     TE_peak ESR_close 1.0000000000
3745             MIR   166     TE_peak   LR_open 0.9880952381
3746              L2   147     TE_peak        NR 0.7819148936
3747            <NA>    NA not_TE_peak   LR_open           NA
3748   Simple_repeat    58     TE_peak        NR 1.0000000000
3749   Simple_repeat    75     TE_peak        NR 1.0000000000
3750   Simple_repeat    20     TE_peak        NR 1.0000000000
3751             MIR   152     TE_peak        NR 1.0000000000
3752             MIR    48     TE_peak        NR 0.6857142857
3753             Alu    83     TE_peak        NR 0.6240601504
3754             Alu    38     TE_peak        NR 0.1407407407
3755             Alu   114     TE_peak        NR 1.0000000000
3756             MIR   156     TE_peak        NR 1.0000000000
3757             MIR    17     TE_peak        NR 0.2207792208
3758             Alu   112     TE_peak EAR_close 0.3862068966
3759   Simple_repeat    50     TE_peak  LR_close 1.0000000000
3760   Simple_repeat    53     TE_peak  LR_close 1.0000000000
3761   Simple_repeat    38     TE_peak  EAR_open 1.0000000000
3762   Simple_repeat    43     TE_peak  EAR_open 1.0000000000
3763             Alu   137     TE_peak        NR 0.4462540717
3764             MIR    50     TE_peak ESR_close 0.4237288136
3765   Simple_repeat    27     TE_peak        NR 0.3461538462
3766              L2   395     TE_peak EAR_close 0.7247706422
3767            <NA>    NA not_TE_peak        NR           NA
3768            <NA>    NA not_TE_peak        NR           NA
3769              L2    69     TE_peak        NR 1.0000000000
3770             MIR     2     TE_peak        NR 0.0363636364
3771              L2   146     TE_peak        NR 0.5816733068
3772             MIR   106     TE_peak   LR_open 1.0000000000
3773   Simple_repeat    10     TE_peak   LR_open 0.1562500000
3774              L2   156     TE_peak   LR_open 0.6473029046
3775            <NA>    NA not_TE_peak        NR           NA
3776              L2   129     TE_peak ESR_close 1.0000000000
3777   Simple_repeat    59     TE_peak        NR 1.0000000000
3778            <NA>    NA not_TE_peak  EAR_open           NA
3779   Simple_repeat    63     TE_peak        NR 1.0000000000
3780             Alu   160     TE_peak        NR 0.9467455621
3781             MIR   148     TE_peak        NR 0.9308176101
3782             MIR    89     TE_peak        NR 0.3920704846
3783  Low_complexity    78     TE_peak        NR 0.8764044944
3784            <NA>    NA not_TE_peak        NR           NA
3785   Simple_repeat    37     TE_peak ESR_close 1.0000000000
3786            <NA>    NA not_TE_peak        NR           NA
3787      hAT-Tip100    67     TE_peak  LR_close 0.3850574713
3788             MIR    12     TE_peak  LR_close 0.0594059406
3789            <NA>    NA not_TE_peak        NR           NA
3790    TcMar-Tigger    34     TE_peak        NR 0.1517857143
3791            <NA>    NA not_TE_peak        NR           NA
3792            <NA>    NA not_TE_peak        NR           NA
3793   Simple_repeat    18     TE_peak        NR 1.0000000000
3794             CR1   128     TE_peak   LR_open 0.4923076923
3795             MIR    93     TE_peak   LR_open 1.0000000000
3796             Alu   322     TE_peak        NR 1.0000000000
3797            <NA>    NA not_TE_peak        NR           NA
3798              L2   117     TE_peak   LR_open 1.0000000000
3799             Alu   164     TE_peak   LR_open 0.5521885522
3800             Alu    47     TE_peak        NR 0.3560606061
3801              L2   293     TE_peak        NR 1.0000000000
3802              L2   133     TE_peak ESR_close 0.3481675393
3803             MIR    71     TE_peak        NR 0.8160919540
3804             MIR    94     TE_peak        NR 0.7230769231
3805   Simple_repeat    26     TE_peak  LR_close 1.0000000000
3806              L2    55     TE_peak  LR_close 1.0000000000
3807   Simple_repeat    46     TE_peak        NR 1.0000000000
3808             MIR    35     TE_peak        NR 1.0000000000
3809             MIR   148     TE_peak        NR 1.0000000000
3810             MIR   130     TE_peak        NR 1.0000000000
3811             Alu    90     TE_peak   LR_open 0.2931596091
3812              L2    61     TE_peak   LR_open 1.0000000000
3813              L2   358     TE_peak   LR_open 1.0000000000
3814  Low_complexity    60     TE_peak   LR_open 1.0000000000
3815      hAT-Tip100    45     TE_peak ESR_close 0.5000000000
3816              L2    82     TE_peak        NR 1.0000000000
3817            <NA>    NA not_TE_peak        NR           NA
3818   Simple_repeat    33     TE_peak        NR 1.0000000000
3819   Simple_repeat    26     TE_peak        NR 1.0000000000
3820            <NA>    NA not_TE_peak ESR_close           NA
3821             MIR     6     TE_peak        NR 0.0821917808
3822   Simple_repeat    21     TE_peak  LR_close 1.0000000000
3823              L2   184     TE_peak  LR_close 1.0000000000
3824             MIR   212     TE_peak   LR_open 1.0000000000
3825            <NA>    NA not_TE_peak  ESR_open           NA
3826            <NA>    NA not_TE_peak   not_mrc           NA
3827   Simple_repeat    79     TE_peak  ESR_open 0.9518072289
3828             MIR    63     TE_peak   LR_open 0.5833333333
3829            <NA>    NA not_TE_peak        NR           NA
3830             MIR    55     TE_peak  ESR_open 1.0000000000
3831             MIR   119     TE_peak  ESR_open 1.0000000000
3832             MIR    41     TE_peak        NR 0.3228346457
3833   Simple_repeat    17     TE_peak        NR 1.0000000000
3834  Low_complexity    40     TE_peak        NR 1.0000000000
3835             MIR    51     TE_peak        NR 0.8644067797
3836   Simple_repeat   136     TE_peak  ESR_open 0.7683615819
3837   Simple_repeat     2     TE_peak  ESR_open 0.0645161290
3838            <NA>    NA not_TE_peak ESR_close           NA
3839  Low_complexity    34     TE_peak   not_mrc 1.0000000000
3840   Simple_repeat    29     TE_peak ESR_close 1.0000000000
3841             MIR    26     TE_peak ESR_close 0.1538461538
3842   Simple_repeat    28     TE_peak        NR 1.0000000000
3843   Simple_repeat    79     TE_peak        NR 1.0000000000
3844   Simple_repeat   107     TE_peak        NR 1.0000000000
3845   Simple_repeat    57     TE_peak        NR 1.0000000000
3846   Simple_repeat   116     TE_peak        NR 1.0000000000
3847  Low_complexity    40     TE_peak        NR 1.0000000000
3848             MIR   171     TE_peak   LR_open 1.0000000000
3849             MIR    87     TE_peak        NR 0.9354838710
3850             MIR    26     TE_peak        NR 0.3209876543
3851            <NA>    NA not_TE_peak        NR           NA
3852             Alu    45     TE_peak        NR 0.1446945338
3853             CR1    23     TE_peak        NR 0.1564625850
3854             MIR   112     TE_peak        NR 1.0000000000
3855             MIR   187     TE_peak        NR 1.0000000000
3856            ERVL   123     TE_peak   LR_open 1.0000000000
3857             MIR    57     TE_peak   LR_open 1.0000000000
3858              L2   218     TE_peak   LR_open 0.4208494208
3859              L2   260     TE_peak        NR 0.5241935484
3860             MIR   145     TE_peak   LR_open 0.9062500000
3861             MIR    85     TE_peak        NR 1.0000000000
3862             MIR   121     TE_peak        NR 1.0000000000
3863            <NA>    NA not_TE_peak        NR           NA
3864            <NA>    NA not_TE_peak        NR           NA
3865   Simple_repeat    52     TE_peak        NR 1.0000000000
3866             MIR    95     TE_peak        NR 1.0000000000
3867            ERVL   283     TE_peak        NR 0.2542677448
3868            ERVL   191     TE_peak        NR 0.4161220044
3869            ERV1    40     TE_peak        NR 0.3539823009
3870            ERVL   433     TE_peak  ESR_open 0.5537084399
3871            ERV1   287     TE_peak        NR 0.5115864528
3872   Simple_repeat    55     TE_peak  LR_close 1.0000000000
3873  Low_complexity    40     TE_peak  LR_close 1.0000000000
3874   Simple_repeat    34     TE_peak        NR 1.0000000000
3875            <NA>    NA not_TE_peak   LR_open           NA
3876              L2   190     TE_peak        NR 0.4973821990
3877            <NA>    NA not_TE_peak        NR           NA
3878            <NA>    NA not_TE_peak  LR_close           NA
3879            ERVL   239     TE_peak        NR 0.7071005917
3880            ERVL   213     TE_peak        NR 0.8912133891
3881             Alu    64     TE_peak        NR 0.2044728435
3882              L2    69     TE_peak        NR 1.0000000000
3883              L2     4     TE_peak        NR 0.0310077519
3884             SVA   101     TE_peak  EAR_open 0.0954631380
3885             MIR   165     TE_peak  LR_close 1.0000000000
3886            <NA>    NA not_TE_peak   LR_open           NA
3887  Low_complexity   103     TE_peak        NR 1.0000000000
3888             MIR   148     TE_peak        NR 1.0000000000
3889              L2    52     TE_peak        NR 1.0000000000
3890              L2    71     TE_peak        NR 1.0000000000
3891   Simple_repeat    42     TE_peak        NR 1.0000000000
3892             CR1   125     TE_peak        NR 0.6097560976
3893             Alu    93     TE_peak EAR_close 0.3263157895
3894             Alu   164     TE_peak EAR_close 0.5324675325
3895              L2    37     TE_peak        NR 0.4683544304
3896            <NA>    NA not_TE_peak        NR           NA
3897            <NA>    NA not_TE_peak   LR_open           NA
3898              L2   177     TE_peak        NR 1.0000000000
3899            <NA>    NA not_TE_peak        NR           NA
3900     hAT-Charlie     2     TE_peak   LR_open 0.0202020202
3901             MIR   101     TE_peak   LR_open 1.0000000000
3902              L1   122     TE_peak  LR_close 1.0000000000
3903       ERVL-MaLR   365     TE_peak  LR_close 1.0000000000
3904             Alu   225     TE_peak  LR_close 0.9146341463
3905             Alu    69     TE_peak        NR 0.3575129534
3906    TcMar-Tigger   159     TE_peak        NR 1.0000000000
3907    TcMar-Tigger   106     TE_peak        NR 1.0000000000
3908             Alu   156     TE_peak        NR 0.5182724252
3909            <NA>    NA not_TE_peak        NR           NA
3910    TcMar-Tigger    75     TE_peak   LR_open 0.4629629630
3911             Alu   303     TE_peak   LR_open 1.0000000000
3912    TcMar-Tigger   206     TE_peak   LR_open 0.6732026144
3913            <NA>    NA not_TE_peak  ESR_open           NA
3914             MIR    70     TE_peak  ESR_open 1.0000000000
3915             Alu   175     TE_peak  ESR_open 1.0000000000
3916             MIR   182     TE_peak  ESR_open 1.0000000000
3917             MIR    65     TE_peak  ESR_open 1.0000000000
3918             Alu    74     TE_peak        NR 0.2491582492
3919              L2    21     TE_peak        NR 0.0364583333
3920             Alu     9     TE_peak  LR_close 0.0279503106
3921     hAT-Charlie    67     TE_peak  LR_close 1.0000000000
3922             MIR   234     TE_peak        NR 1.0000000000
3923             MIR    62     TE_peak        NR 1.0000000000
3924            <NA>    NA not_TE_peak   LR_open           NA
3925             Alu    68     TE_peak   LR_open 0.3349753695
3926             Alu     9     TE_peak   LR_open 0.0625000000
3927             MIR   160     TE_peak  LR_close 1.0000000000
3928              L2    32     TE_peak  LR_close 1.0000000000
3929             MIR   223     TE_peak  LR_close 1.0000000000
3930             Alu   107     TE_peak  LR_close 0.3440514469
3931   Simple_repeat    32     TE_peak  LR_close 1.0000000000
3932   Simple_repeat    21     TE_peak  LR_close 0.5384615385
3933              L1     5     TE_peak        NR 0.0314465409
3934              L1   168     TE_peak        NR 1.0000000000
3935   Simple_repeat    30     TE_peak        NR 1.0000000000
3936             MIR   100     TE_peak        NR 1.0000000000
3937   Simple_repeat    50     TE_peak        NR 1.0000000000
3938             Alu    42     TE_peak        NR 0.3181818182
3939   Simple_repeat    22     TE_peak        NR 1.0000000000
3940            <NA>    NA not_TE_peak        NR           NA
3941              L2    14     TE_peak        NR 0.1458333333
3942             MIR    94     TE_peak        NR 1.0000000000
3943            ERVL    64     TE_peak        NR 1.0000000000
3944             Alu    76     TE_peak        NR 0.5937500000
3945            <NA>    NA not_TE_peak        NR           NA
3946             Alu   146     TE_peak        NR 0.9480519481
3947   Simple_repeat    32     TE_peak        NR 1.0000000000
3948             MIR   141     TE_peak   LR_open 0.9155844156
3949             MIR   154     TE_peak   LR_open 1.0000000000
3950   Simple_repeat    83     TE_peak        NR 1.0000000000
3951   Simple_repeat    41     TE_peak        NR 1.0000000000
3952            <NA>    NA not_TE_peak        NR           NA
3953             MIR   160     TE_peak        NR 0.8121827411
3954             MIR    21     TE_peak        NR 0.2658227848
3955             MIR    45     TE_peak        NR 0.2678571429
3956            <NA>    NA not_TE_peak   LR_open           NA
3957             MIR    97     TE_peak        NR 1.0000000000
3958            <NA>    NA not_TE_peak    ESR_OC           NA
3959             Alu    10     TE_peak        NR 0.0340136054
3960             Alu   307     TE_peak        NR 1.0000000000
3961             Alu   141     TE_peak        NR 1.0000000000
3962             Alu   143     TE_peak   LR_open 0.4612903226
3963             Alu    96     TE_peak   LR_open 0.4016736402
3964   TcMar-Mariner   116     TE_peak   LR_open 1.0000000000
3965             Alu    39     TE_peak   LR_open 0.3679245283
3966             Alu    99     TE_peak   LR_open 0.3355932203
3967              L1   226     TE_peak   LR_open 1.0000000000
3968   Simple_repeat    30     TE_peak   LR_open 1.0000000000
3969             Alu    44     TE_peak   LR_open 0.1605839416
3970             MIR   102     TE_peak   LR_open 0.6455696203
3971             Alu   200     TE_peak   LR_open 0.6622516556
3972              L2    52     TE_peak   LR_open 1.0000000000
3973             MIR   160     TE_peak   LR_open 1.0000000000
3974              L2    44     TE_peak   LR_open 1.0000000000
3975            <NA>    NA not_TE_peak        NR           NA
3976            <NA>    NA not_TE_peak        NR           NA
3977              L1    94     TE_peak   LR_open 0.7121212121
3978    TcMar-Tigger   362     TE_peak   LR_open 1.0000000000
3979             Alu   148     TE_peak   LR_open 0.5068493151
3980             Alu   207     TE_peak ESR_close 0.7137931034
3981            ERV1   305     TE_peak ESR_close 0.7682619647
3982            ERVL   328     TE_peak EAR_close 0.7922705314
3983   Simple_repeat    19     TE_peak        NR 1.0000000000
3984              L1    39     TE_peak        NR 0.2516129032
3985    TcMar-Tigger   284     TE_peak   LR_open 0.5472061657
3986             Alu    28     TE_peak   LR_open 0.0897435897
3987             Alu   230     TE_peak   LR_open 0.7641196013
3988             MIR   132     TE_peak   LR_open 1.0000000000
3989             Alu   233     TE_peak   LR_open 0.7792642140
3990             Alu   107     TE_peak        NR 0.3440514469
3991       ERVL-MaLR   305     TE_peak        NR 1.0000000000
3992       ERVL-MaLR   341     TE_peak        NR 0.7893518519
3993             Alu   191     TE_peak        NR 1.0000000000
3994             Alu    89     TE_peak        NR 0.6846153846
3995             Alu   182     TE_peak   LR_open 0.6275862069
3996              L2   120     TE_peak        NR 1.0000000000
3997             Alu   123     TE_peak   LR_open 0.4006514658
3998             Alu   149     TE_peak  EAR_open 0.4983277592
3999             Alu   297     TE_peak  EAR_open 1.0000000000
4000             Alu   165     TE_peak  EAR_open 0.9375000000
4001           snRNA   207     TE_peak  ESR_open 1.0000000000
4002             Alu   121     TE_peak  ESR_open 0.3980263158
4003              L2    58     TE_peak        NR 0.3866666667
4004   Simple_repeat    41     TE_peak        NR 1.0000000000
4005              L2   257     TE_peak        NR 0.9244604317
4006            <NA>    NA not_TE_peak  LR_close           NA
4007             Alu    55     TE_peak  EAR_open 0.3273809524
4008            ERVK   627     TE_peak  EAR_open 0.6905286344
4009             Alu   111     TE_peak        NR 0.4036363636
4010   Simple_repeat    39     TE_peak        NR 1.0000000000
4011             MIR    28     TE_peak        NR 0.9333333333
4012             MIR   133     TE_peak        NR 1.0000000000
4013             MIR    48     TE_peak        NR 0.5000000000
4014             Alu    46     TE_peak   LR_open 0.1900826446
4015             MIR   119     TE_peak   LR_open 1.0000000000
4016             MIR   120     TE_peak        NR 1.0000000000
4017              L2    79     TE_peak        NR 1.0000000000
4018   Simple_repeat    15     TE_peak        NR 0.2830188679
4019   Simple_repeat    20     TE_peak        NR 0.3773584906
4020             MIR   101     TE_peak        NR 1.0000000000
4021  Low_complexity    76     TE_peak        NR 1.0000000000
4022             Alu     5     TE_peak   LR_open 0.0194552529
4023              L2    77     TE_peak   LR_open 1.0000000000
4024             MIR    80     TE_peak   LR_open 1.0000000000
4025        RTE-BovB    58     TE_peak  LR_close 1.0000000000
4026             MIR   115     TE_peak  LR_close 1.0000000000
4027              L2    53     TE_peak  LR_close 1.0000000000
4028             MIR    61     TE_peak        NR 0.3742331288
4029             Alu   141     TE_peak        NR 0.4779661017
4030             Alu   146     TE_peak        NR 1.0000000000
4031             Alu   186     TE_peak        NR 1.0000000000
4032              L1    11     TE_peak        NR 0.3437500000
4033             Alu    66     TE_peak        NR 0.4962406015
4034            ERVL   441     TE_peak        NR 0.4783080260
4035             MIR    77     TE_peak        NR 1.0000000000
4036   Simple_repeat    38     TE_peak        NR 1.0000000000
4037  Low_complexity   111     TE_peak        NR 1.0000000000
4038   hAT-Blackjack   205     TE_peak   LR_open 1.0000000000
4039            <NA>    NA not_TE_peak   LR_open           NA
4040   Simple_repeat    28     TE_peak        NR 1.0000000000
4041             Alu   225     TE_peak   LR_open 0.7500000000
4042             Alu   152     TE_peak   LR_open 1.0000000000
4043              L2   214     TE_peak   LR_open 1.0000000000
4044             MIR    97     TE_peak   LR_open 1.0000000000
4045   hAT-Blackjack    91     TE_peak   LR_open 1.0000000000
4046             Alu    61     TE_peak   LR_open 0.2033333333
4047             Alu   261     TE_peak  EAR_open 0.8529411765
4048             Alu    37     TE_peak  EAR_open 0.1340579710
4049            <NA>    NA not_TE_peak  LR_close           NA
4050              L2    60     TE_peak  EAR_open 1.0000000000
4051  Low_complexity    32     TE_peak  EAR_open 1.0000000000
4052             Alu   308     TE_peak  EAR_open 1.0000000000
4053             Alu    59     TE_peak        NR 0.2084805654
4054            <NA>    NA not_TE_peak        NR           NA
4055             MIR   145     TE_peak   LR_open 0.6066945607
4056  Low_complexity   106     TE_peak   LR_open 1.0000000000
4057             Alu    10     TE_peak        NR 0.0359712230
4058   Simple_repeat    12     TE_peak        NR 0.4137931034
4059    TcMar-Tigger   110     TE_peak        NR 0.2178217822
4060             Alu   168     TE_peak        NR 1.0000000000
4061             Alu    29     TE_peak        NR 0.0979729730
4062             Alu   127     TE_peak   LR_open 0.4319727891
4063             Alu   211     TE_peak   LR_open 0.9134199134
4064       ERVL-MaLR    55     TE_peak        NR 0.7746478873
4065              L2   294     TE_peak        NR 1.0000000000
4066             MIR    39     TE_peak        NR 0.3482142857
4067             Alu   254     TE_peak    ESR_OC 0.8552188552
4068       ERVL-MaLR    77     TE_peak    ESR_OC 1.0000000000
4069             MIR    92     TE_peak    ESR_OC 1.0000000000
4070             MIR   162     TE_peak    ESR_OC 1.0000000000
4071             MIR    55     TE_peak   LR_open 0.3548387097
4072              L2   133     TE_peak   LR_open 1.0000000000
4073   Simple_repeat    90     TE_peak        NR 1.0000000000
4074             MIR    96     TE_peak   not_mrc 1.0000000000
4075   Simple_repeat    50     TE_peak ESR_close 1.0000000000
4076        tRNA-Deu    73     TE_peak        NR 1.0000000000
4077   Simple_repeat    55     TE_peak        NR 1.0000000000
4078   Simple_repeat    53     TE_peak        NR 1.0000000000
4079             MIR    26     TE_peak        NR 0.2096774194
4080   Simple_repeat    26     TE_peak        NR 1.0000000000
4081   Simple_repeat    80     TE_peak        NR 1.0000000000
4082             Alu     9     TE_peak   LR_open 0.0277777778
4083             Alu   230     TE_peak   LR_open 0.7931034483
4084       MULE-MuDR   428     TE_peak        NR 0.2419446015
4085            ERV1   296     TE_peak  LR_close 0.3466042155
4086              L2   359     TE_peak        NR 0.9324675325
4087           scRNA    99     TE_peak        NR 1.0000000000
4088              L1    58     TE_peak        NR 0.1661891117
4089             MIR    90     TE_peak        NR 0.5357142857
4090              L2    52     TE_peak        NR 0.5473684211
4091     hAT-Charlie   180     TE_peak  LR_close 0.9944751381
4092              L2   394     TE_peak  LR_close 0.8259958071
4093              L2    66     TE_peak        NR 1.0000000000
4094             MIR   115     TE_peak        NR 1.0000000000
4095             MIR   163     TE_peak        NR 1.0000000000
4096            <NA>    NA not_TE_peak   LR_open           NA
4097   Simple_repeat    80     TE_peak        NR 1.0000000000
4098   Simple_repeat    41     TE_peak        NR 1.0000000000
4099  Low_complexity    42     TE_peak        NR 0.9333333333
4100            <NA>    NA not_TE_peak        NR           NA
4101             MIR    89     TE_peak        NR 0.4564102564
4102            ERVK   576     TE_peak        NR 1.0000000000
4103   Simple_repeat    63     TE_peak        NR 1.0000000000
4104             MIR   145     TE_peak        NR 0.6531531532
4105             Alu   153     TE_peak        NR 0.5016393443
4106     hAT-Charlie    39     TE_peak        NR 1.0000000000
4107             MIR    93     TE_peak        NR 1.0000000000
4108             MIR   117     TE_peak        NR 1.0000000000
4109             MIR   103     TE_peak        NR 1.0000000000
4110             MIR   157     TE_peak        NR 0.7201834862
4111             MIR   153     TE_peak        NR 1.0000000000
4112              L2   202     TE_peak        NR 0.6372239748
4113     hAT-Charlie   230     TE_peak        NR 1.0000000000
4114              L2   265     TE_peak        NR 1.0000000000
4115             MIR   108     TE_peak        NR 1.0000000000
4116             Alu    54     TE_peak   LR_open 0.1806020067
4117              L2    40     TE_peak   LR_open 0.6779661017
4118             Alu   155     TE_peak   LR_open 0.4967948718
4119             MIR    34     TE_peak        NR 0.5862068966
4120             CR1    30     TE_peak   LR_open 0.1224489796
4121   Simple_repeat    47     TE_peak   LR_open 1.0000000000
4122   Simple_repeat    55     TE_peak   LR_open 1.0000000000
4123   Simple_repeat    33     TE_peak   LR_open 1.0000000000
4124            <NA>    NA not_TE_peak   LR_open           NA
4125            <NA>    NA not_TE_peak EAR_close           NA
4126   Simple_repeat     7     TE_peak        NR 0.1707317073
4127            <NA>    NA not_TE_peak ESR_close           NA
4128  Low_complexity    63     TE_peak        NR 1.0000000000
4129     hAT-Charlie   250     TE_peak        NR 1.0000000000
4130            <NA>    NA not_TE_peak ESR_close           NA
4131             MIR    54     TE_peak        NR 0.2231404959
4132             CR1   480     TE_peak        NR 0.9504950495
4133    TcMar-Tigger   144     TE_peak   LR_open 0.3945205479
4134             MIR    78     TE_peak        NR 0.3157894737
4135              L2   412     TE_peak        NR 1.0000000000
4136            <NA>    NA not_TE_peak        NR           NA
4137            ERVL   459     TE_peak   LR_open 0.6194331984
4138            <NA>    NA not_TE_peak ESR_close           NA
4139            <NA>    NA not_TE_peak        NR           NA
4140             MIR    41     TE_peak ESR_close 0.2770270270
4141              L2   163     TE_peak  LR_close 0.4034653465
4142   Simple_repeat    14     TE_peak  LR_close 0.2058823529
4143             CR1   178     TE_peak        NR 0.3625254582
4144             MIR   107     TE_peak        NR 0.4403292181
4145       ERVL-MaLR   109     TE_peak ESR_close 1.0000000000
4146       ERVL-MaLR   221     TE_peak ESR_close 1.0000000000
4147  Low_complexity    34     TE_peak  EAR_open 0.9714285714
4148       ERVL-MaLR   175     TE_peak  EAR_open 1.0000000000
4149              L2   158     TE_peak  ESR_open 1.0000000000
4150      hAT-Tip100    17     TE_peak  ESR_open 0.1954022989
4151             MIR    29     TE_peak   LR_open 0.1946308725
4152   Simple_repeat   680     TE_peak   LR_open 0.9590973202
4153            ERV1    63     TE_peak        NR 1.0000000000
4154            ERV1   278     TE_peak        NR 0.4058394161
4155              L1   541     TE_peak   LR_open 0.8560126582
4156            <NA>    NA not_TE_peak        NR           NA
4157             MIR   171     TE_peak   LR_open 1.0000000000
4158       ERVL-MaLR    73     TE_peak EAR_close 0.4371257485
4159       ERVL-MaLR    68     TE_peak  LR_close 0.2085889571
4160             MIR   107     TE_peak ESR_close 1.0000000000
4161              L1   515     TE_peak   LR_open 0.8818493151
4162  Low_complexity    46     TE_peak ESR_close 1.0000000000
4163   Simple_repeat     6     TE_peak ESR_close 1.0000000000
4164            <NA>    NA not_TE_peak        NR           NA
4165  Low_complexity    32     TE_peak ESR_close 0.0816326531
4166             MIR   119     TE_peak   LR_open 1.0000000000
4167     hAT-Charlie    68     TE_peak        NR 0.3597883598
4168            ERVL   429     TE_peak        NR 0.6630602782
4169              L2    91     TE_peak ESR_close 0.5870967742
4170            <NA>    NA not_TE_peak        NR           NA
4171   Simple_repeat    64     TE_peak   LR_open 1.0000000000
4172   Simple_repeat   744     TE_peak   LR_open 0.6979362101
4173             MIR    85     TE_peak ESR_close 1.0000000000
4174       ERVL-MaLR     3     TE_peak ESR_close 0.0107913669
4175            ERVL   259     TE_peak  LR_close 0.6410891089
4176            <NA>    NA not_TE_peak        NR           NA
4177   Simple_repeat    31     TE_peak  LR_close 1.0000000000
4178              L1    55     TE_peak        NR 0.1428571429
4179              L2   292     TE_peak ESR_close 0.1727810651
4180            ERV1   497     TE_peak   not_mrc 0.9102564103
4181            <NA>    NA not_TE_peak        NR           NA
4182             MIR   143     TE_peak  LR_close 0.5789473684
4183             MIR   158     TE_peak        NR 1.0000000000
4184            <NA>    NA not_TE_peak        NR           NA
4185            <NA>    NA not_TE_peak        NR           NA
4186             MIR    98     TE_peak        NR 1.0000000000
4187             MIR    34     TE_peak        NR 0.1818181818
4188             MIR    75     TE_peak        NR 0.4010695187
4189             MIR   218     TE_peak        NR 1.0000000000
4190             MIR    32     TE_peak        NR 1.0000000000
4191        PiggyBac   128     TE_peak        NR 1.0000000000
4192             MIR   174     TE_peak        NR 1.0000000000
4193            ERVL   117     TE_peak   LR_open 0.8540145985
4194             MIR    54     TE_peak   LR_open 1.0000000000
4195   Simple_repeat    25     TE_peak   LR_open 1.0000000000
4196   Simple_repeat    76     TE_peak   LR_open 0.9156626506
4197             MIR   111     TE_peak        NR 1.0000000000
4198       ERVL-MaLR   272     TE_peak   LR_open 0.6181818182
4199              L2    67     TE_peak   LR_open 0.5630252101
4200             MIR   118     TE_peak   LR_open 1.0000000000
4201       ERVL-MaLR    48     TE_peak   LR_open 0.2874251497
4202             Alu    55     TE_peak  LR_close 0.1833333333
4203      hAT-Tip100   302     TE_peak  LR_close 1.0000000000
4204             MIR   220     TE_peak  LR_close 1.0000000000
4205             MIR    23     TE_peak  LR_close 0.1455696203
4206            <NA>    NA not_TE_peak   not_mrc           NA
4207   Simple_repeat    34     TE_peak  LR_close 1.0000000000
4208  Low_complexity    14     TE_peak  LR_close 0.3888888889
4209             MIR   131     TE_peak    ESR_OC 1.0000000000
4210             MIR    77     TE_peak    ESR_OC 1.0000000000
4211            <NA>    NA not_TE_peak        NR           NA
4212              L2    92     TE_peak        NR 0.5859872611
4213              L1   131     TE_peak        NR 0.5077519380
4214            <NA>    NA not_TE_peak   not_mrc           NA
4215             MIR    80     TE_peak EAR_close 0.9195402299
4216             MIR    87     TE_peak EAR_close 1.0000000000
4217     hAT-Charlie   294     TE_peak EAR_close 1.0000000000
4218            <NA>    NA not_TE_peak        NR           NA
4219              L2    80     TE_peak        NR 0.2332361516
4220             MIR   252     TE_peak        NR 1.0000000000
4221            ERVL   224     TE_peak        NR 0.6686567164
4222              L2    73     TE_peak  LR_close 0.6239316239
4223              L2    95     TE_peak  LR_close 1.0000000000
4224             MIR    39     TE_peak  LR_close 1.0000000000
4225            ERVL    84     TE_peak  LR_close 0.1842105263
4226            ERVL    11     TE_peak  LR_close 0.0209523810
4227              L2    61     TE_peak  LR_close 1.0000000000
4228             MIR    15     TE_peak   LR_open 0.1020408163
4229            <NA>    NA not_TE_peak        NR           NA
4230              L2   100     TE_peak  LR_close 0.7874015748
4231            ERV1    61     TE_peak ESR_close 0.0966719493
4232             MIR    40     TE_peak   LR_open 0.2209944751
4233             MIR   188     TE_peak   LR_open 1.0000000000
4234            <NA>    NA not_TE_peak  LR_close           NA
4235      hAT-Tip100    87     TE_peak  EAR_open 1.0000000000
4236              L2   107     TE_peak  EAR_open 1.0000000000
4237             Alu    11     TE_peak        NR 0.0364238411
4238   Simple_repeat    61     TE_peak ESR_close 1.0000000000
4239       ERVL-MaLR   164     TE_peak ESR_close 1.0000000000
4240            <NA>    NA not_TE_peak        NR           NA
4241              L2   426     TE_peak EAR_close 0.3349056604
4242             MIR    82     TE_peak  LR_close 1.0000000000
4243             MIR   201     TE_peak        NR 1.0000000000
4244              L1    53     TE_peak        NR 0.8833333333
4245            <NA>    NA not_TE_peak        NR           NA
4246            <NA>    NA not_TE_peak        NR           NA
4247   Simple_repeat   106     TE_peak        NR 1.0000000000
4248             CR1    61     TE_peak        NR 1.0000000000
4249   Simple_repeat     8     TE_peak  ESR_open 0.0322580645
4250             MIR    93     TE_peak   LR_open 0.3522727273
4251             CR1    92     TE_peak   LR_open 1.0000000000
4252             MIR    49     TE_peak   LR_open 1.0000000000
4253             MIR    25     TE_peak        NR 0.1760563380
4254             Alu   268     TE_peak        NR 1.0000000000
4255   Simple_repeat    58     TE_peak        NR 1.0000000000
4256             MIR    23     TE_peak ESR_close 0.1411042945
4257       ERVL-MaLR   192     TE_peak ESR_close 0.5408450704
4258             MIR    22     TE_peak        NR 0.2417582418
4259             MIR   105     TE_peak        NR 1.0000000000
4260              L1    39     TE_peak        NR 1.0000000000
4261             Alu    48     TE_peak        NR 0.1553398058
4262   Simple_repeat    14     TE_peak  LR_close 0.2800000000
4263             MIR   156     TE_peak  LR_close 1.0000000000
4264             MIR    22     TE_peak   not_mrc 0.2315789474
4265             MIR    49     TE_peak   not_mrc 0.3006134969
4266             MIR    85     TE_peak        NR 0.3148148148
4267     hAT-Charlie   248     TE_peak        NR 0.7923322684
4268             MIR   106     TE_peak        NR 1.0000000000
4269             MIR    49     TE_peak   LR_open 0.7000000000
4270             MIR   205     TE_peak   LR_open 0.8039215686
4271              L1   135     TE_peak        NR 0.3068181818
4272              L2   297     TE_peak        NR 1.0000000000
4273          Gypsy?   186     TE_peak        NR 1.0000000000
4274              L2    76     TE_peak        NR 1.0000000000
4275             MIR   127     TE_peak        NR 1.0000000000
4276             MIR    99     TE_peak        NR 1.0000000000
4277              L2   228     TE_peak        NR 0.4261682243
4278              L2    44     TE_peak        NR 0.1803278689
4279              L2    48     TE_peak        NR 0.0690647482
4280             MIR    43     TE_peak   not_mrc 0.2263157895
4281              L2   345     TE_peak   not_mrc 1.0000000000
4282             MIR   110     TE_peak EAR_close 0.7189542484
4283   Simple_repeat    30     TE_peak        NR 1.0000000000
4284   Simple_repeat    45     TE_peak        NR 0.4787234043
4285       ERVL-MaLR   155     TE_peak  LR_close 0.3546910755
4286   Simple_repeat    55     TE_peak        NR 1.0000000000
4287             MIR   108     TE_peak        NR 0.6067415730
4288              L2   105     TE_peak        NR 0.9292035398
4289   Simple_repeat    41     TE_peak        NR 1.0000000000
4290              L2   128     TE_peak        NR 1.0000000000
4291              L2   128     TE_peak        NR 1.0000000000
4292             MIR   107     TE_peak        NR 1.0000000000
4293   Simple_repeat    23     TE_peak        NR 1.0000000000
4294   Simple_repeat   221     TE_peak   LR_open 0.3536000000
4295            <NA>    NA not_TE_peak   LR_open           NA
4296   Simple_repeat    34     TE_peak  ESR_open 1.0000000000
4297   Simple_repeat    29     TE_peak  ESR_open 1.0000000000
4298   Simple_repeat    28     TE_peak        NR 1.0000000000
4299   Simple_repeat    41     TE_peak        NR 1.0000000000
4300  Low_complexity    34     TE_peak        NR 0.6938775510
4301  Low_complexity    39     TE_peak        NR 1.0000000000
4302   Simple_repeat    36     TE_peak        NR 1.0000000000
4303             CR1   174     TE_peak        NR 1.0000000000
4304             MIR   148     TE_peak        NR 1.0000000000
4305             MIR   136     TE_peak        NR 0.6098654709
4306   Simple_repeat    57     TE_peak   LR_open 1.0000000000
4307             MIR   166     TE_peak   LR_open 1.0000000000
4308              L2    58     TE_peak   LR_open 0.9206349206
4309            <NA>    NA not_TE_peak  ESR_open           NA
4310            <NA>    NA not_TE_peak   LR_open           NA
4311             Alu   188     TE_peak        NR 0.7258687259
4312             Alu    64     TE_peak        NR 0.2140468227
4313            <NA>    NA not_TE_peak  ESR_open           NA
4314            <NA>    NA not_TE_peak   LR_open           NA
4315             Alu   110     TE_peak  ESR_open 0.3859649123
4316    TcMar-Tigger   183     TE_peak        NR 0.5462686567
4317            <NA>    NA not_TE_peak        NR           NA
4318            <NA>    NA not_TE_peak        NR           NA
4319            <NA>    NA not_TE_peak        NR           NA
4320       ERVL-MaLR   299     TE_peak   LR_open 1.0000000000
4321       ERVL-MaLR   259     TE_peak   LR_open 1.0000000000
4322             Alu    94     TE_peak   LR_open 0.3468634686
4323             Alu   227     TE_peak        NR 0.7183544304
4324             Alu    65     TE_peak   LR_open 0.5284552846
4325              L2    64     TE_peak   LR_open 1.0000000000
4326       ERVL-MaLR   174     TE_peak        NR 0.4223300971
4327             Alu    32     TE_peak        NR 0.1118881119
4328             MIR   135     TE_peak        NR 0.7584269663
4329            <NA>    NA not_TE_peak        NR           NA
4330              L2   113     TE_peak   LR_open 0.4312977099
4331             Alu   337     TE_peak   LR_open 1.0000000000
4332              L2    55     TE_peak   LR_open 1.0000000000
4333             MIR    92     TE_peak   LR_open 0.9200000000
4334             Alu    55     TE_peak        NR 0.1839464883
4335             Alu   164     TE_peak        NR 1.0000000000
4336   Simple_repeat    48     TE_peak        NR 1.0000000000
4337           Gypsy   103     TE_peak        NR 1.0000000000
4338   hAT-Blackjack   192     TE_peak        NR 1.0000000000
4339             MIR   147     TE_peak        NR 0.6837209302
4340              L1   116     TE_peak        NR 0.7682119205
4341              L2    52     TE_peak        NR 1.0000000000
4342             MIR    98     TE_peak        NR 1.0000000000
4343             Alu    42     TE_peak        NR 0.1538461538
4344            ERV1   207     TE_peak  EAR_open 0.7527272727
4345              L2    64     TE_peak  EAR_open 1.0000000000
4346              L1   117     TE_peak  EAR_open 1.0000000000
4347              L1    28     TE_peak  EAR_open 0.1656804734
4348             MIR   113     TE_peak        NR 0.6141304348
4349  Low_complexity   222     TE_peak        NR 0.8638132296
4350             MIR   111     TE_peak        NR 1.0000000000
4351            ERV1    55     TE_peak        NR 0.1692307692
4352             Alu   199     TE_peak        NR 0.6589403974
4353             MIR    17     TE_peak        NR 1.0000000000
4354   Simple_repeat    14     TE_peak        NR 0.2978723404
4355             Alu    85     TE_peak        NR 0.2750809061
4356             MIR   140     TE_peak        NR 1.0000000000
4357            ERV1    51     TE_peak        NR 0.2512315271
4358   Simple_repeat     6     TE_peak        NR 0.1818181818
4359            <NA>    NA not_TE_peak        NR           NA
4360             MIR    66     TE_peak        NR 0.2650602410
4361     hAT-Charlie    84     TE_peak        NR 1.0000000000
4362     hAT-Charlie    64     TE_peak        NR 1.0000000000
4363              L2    67     TE_peak        NR 1.0000000000
4364             MIR    78     TE_peak        NR 1.0000000000
4365             MIR    90     TE_peak        NR 0.4411764706
4366            <NA>    NA not_TE_peak   not_mrc           NA
4367             CR1   120     TE_peak        NR 1.0000000000
4368   Simple_repeat    48     TE_peak        NR 1.0000000000
4369   Simple_repeat    90     TE_peak        NR 1.0000000000
4370   Simple_repeat    53     TE_peak        NR 1.0000000000
4371   Simple_repeat    33     TE_peak        NR 1.0000000000
4372  Low_complexity    82     TE_peak        NR 1.0000000000
4373             MIR    96     TE_peak        NR 0.4285714286
4374             MIR   216     TE_peak        NR 0.9773755656
4375             MIR   199     TE_peak ESR_close 1.0000000000
4376             Alu    39     TE_peak ESR_close 0.1335616438
4377              L2    69     TE_peak        NR 1.0000000000
4378              L2   145     TE_peak        NR 0.2230769231
4379    TcMar-Tigger   359     TE_peak   LR_open 0.4864498645
4380           RTE-X    41     TE_peak   LR_open 1.0000000000
4381             Alu   158     TE_peak   LR_open 1.0000000000
4382             Alu    41     TE_peak   LR_open 0.1366666667
4383   Simple_repeat    39     TE_peak        NR 1.0000000000
4384            <NA>    NA not_TE_peak        NR           NA
4385            <NA>    NA not_TE_peak ESR_close           NA
4386             MIR   144     TE_peak        NR 1.0000000000
4387             MIR   107     TE_peak        NR 1.0000000000
4388              L2   331     TE_peak        NR 1.0000000000
4389              L2   244     TE_peak        NR 1.0000000000
4390       ERVL-MaLR   116     TE_peak        NR 0.5296803653
4391      hAT-Tip100    28     TE_peak        NR 0.2886597938
4392             MIR    29     TE_peak        NR 0.2871287129
4393             MIR   150     TE_peak        NR 1.0000000000
4394             MIR   130     TE_peak        NR 1.0000000000
4395             Alu    77     TE_peak        NR 0.2452229299
4396      hAT-Tip100     2     TE_peak   LR_open 0.0645161290
4397   Simple_repeat    32     TE_peak        NR 1.0000000000
4398   Simple_repeat    78     TE_peak        NR 1.0000000000
4399              L2   157     TE_peak  LR_close 0.4577259475
4400              L2   168     TE_peak        NR 0.8795811518
4401              L2    98     TE_peak        NR 0.7596899225
4402            ERV1   250     TE_peak        NR 0.5219206681
4403             MIR    79     TE_peak        NR 1.0000000000
4404            <NA>    NA not_TE_peak        NR           NA
4405      hAT-Tip100   183     TE_peak        NR 0.6654545455
4406             MIR    47     TE_peak        NR 1.0000000000
4407            ERV1   930     TE_peak        NR 0.2896293989
4408            ERV1   415     TE_peak        NR 0.1292432264
4409              L2    17     TE_peak        NR 0.0395348837
4410             MIR    44     TE_peak        NR 1.0000000000
4411              L2   364     TE_peak        NR 1.0000000000
4412            hAT?   408     TE_peak        NR 0.8680851064
4413            ERV1   423     TE_peak        NR 0.6229749632
4414             MIR   105     TE_peak        NR 0.6862745098
4415             MIR    65     TE_peak        NR 1.0000000000
4416              L2    15     TE_peak        NR 0.0602409639
4417             Alu   106     TE_peak EAR_close 0.3521594684
4418             Alu    88     TE_peak EAR_close 0.3098591549
4419            <NA>    NA not_TE_peak   LR_open           NA
4420            <NA>    NA not_TE_peak        NR           NA
4421             MIR    53     TE_peak EAR_close 1.0000000000
4422              L2     7     TE_peak  LR_close 0.0212765957
4423  Low_complexity    36     TE_peak   not_mrc 1.0000000000
4424             MIR   143     TE_peak        NR 1.0000000000
4425   Simple_repeat    55     TE_peak        NR 1.0000000000
4426              L2    24     TE_peak        NR 0.8571428571
4427             MIR   127     TE_peak        NR 1.0000000000
4428             Alu    78     TE_peak        NR 0.6190476190
4429   Simple_repeat    21     TE_peak        NR 0.8076923077
4430            <NA>    NA not_TE_peak   LR_open           NA
4431            <NA>    NA not_TE_peak  LR_close           NA
4432             CR1   133     TE_peak  LR_close 0.3085846868
4433            <NA>    NA not_TE_peak   LR_open           NA
4434       ERVL-MaLR   265     TE_peak ESR_close 1.0000000000
4435              L2    92     TE_peak   LR_open 0.5822784810
4436              L2   397     TE_peak   LR_open 0.9778325123
4437             MIR    10     TE_peak        NR 0.0793650794
4438              L2   580     TE_peak  LR_close 0.8695652174
4439              L2    82     TE_peak  LR_close 0.3153846154
4440   Simple_repeat    55     TE_peak        NR 1.0000000000
4441             MIR    38     TE_peak        NR 0.3689320388
4442              L2   370     TE_peak        NR 1.0000000000
4443              L2   261     TE_peak        NR 0.8030769231
4444            <NA>    NA not_TE_peak        NR           NA
4445              L2    29     TE_peak        NR 0.4915254237
4446             Alu   305     TE_peak        NR 1.0000000000
4447             MIR    86     TE_peak        NR 1.0000000000
4448             Alu   256     TE_peak        NR 0.8448844884
4449             MIR    31     TE_peak   LR_open 0.1308016878
4450             MIR    58     TE_peak   LR_open 1.0000000000
4451             MIR   108     TE_peak   LR_open 1.0000000000
4452     hAT-Charlie    56     TE_peak   LR_open 0.1555555556
4453            <NA>    NA not_TE_peak        NR           NA
4454             MIR   148     TE_peak   LR_open 1.0000000000
4455            <NA>    NA not_TE_peak        NR           NA
4456            <NA>    NA not_TE_peak   LR_open           NA
4457             MIR   147     TE_peak        NR 1.0000000000
4458   Simple_repeat    17     TE_peak        NR 1.0000000000
4459             Alu   167     TE_peak   LR_open 0.5566666667
4460              L2   157     TE_peak   LR_open 1.0000000000
4461             MIR   246     TE_peak        NR 1.0000000000
4462             MIR    84     TE_peak        NR 1.0000000000
4463             MIR   119     TE_peak        NR 1.0000000000
4464             MIR   167     TE_peak  LR_close 1.0000000000
4465             MIR    20     TE_peak  LR_close 0.1379310345
4466             CR1   100     TE_peak   LR_open 0.6024096386
4467            <NA>    NA not_TE_peak  ESR_open           NA
4468          hAT-Ac    52     TE_peak        NR 1.0000000000
4469              L2   347     TE_peak ESR_close 0.4676549865
4470             MIR    44     TE_peak EAR_close 0.3283582090
4471              L2    84     TE_peak EAR_close 1.0000000000
4472              L2    69     TE_peak        NR 1.0000000000
4473             MIR   180     TE_peak ESR_close 0.7692307692
4474              L2    92     TE_peak        NR 0.2738095238
4475  Low_complexity    44     TE_peak        NR 1.0000000000
4476   Simple_repeat    66     TE_peak        NR 1.0000000000
4477  Low_complexity    37     TE_peak        NR 1.0000000000
4478             MIR   178     TE_peak        NR 0.8054298643
4479  Low_complexity    30     TE_peak        NR 1.0000000000
4480   Simple_repeat    27     TE_peak        NR 1.0000000000
4481   Simple_repeat    72     TE_peak        NR 1.0000000000
4482             MIR   127     TE_peak        NR 1.0000000000
4483   Simple_repeat    35     TE_peak  EAR_open 1.0000000000
4484            <NA>    NA not_TE_peak   LR_open           NA
4485              L2   246     TE_peak   LR_open 0.7321428571
4486              L2   150     TE_peak   LR_open 1.0000000000
4487  Low_complexity    46     TE_peak        NR 1.0000000000
4488   Simple_repeat    26     TE_peak        NR 1.0000000000
4489             MIR    82     TE_peak        NR 1.0000000000
4490             MIR   159     TE_peak        NR 1.0000000000
4491             MIR   194     TE_peak        NR 1.0000000000
4492             MIR   163     TE_peak        NR 1.0000000000
4493             MIR    33     TE_peak        NR 0.4125000000
4494             MIR    64     TE_peak        NR 0.7710843373
4495            <NA>    NA not_TE_peak        NR           NA
4496             MIR    91     TE_peak        NR 1.0000000000
4497            ERVL    85     TE_peak        NR 0.6439393939
4498            ERVL   233     TE_peak        NR 0.8726591760
4499            <NA>    NA not_TE_peak        NR           NA
4500             MIR   128     TE_peak        NR 1.0000000000
4501             MIR   227     TE_peak        NR 1.0000000000
4502             MIR    91     TE_peak        NR 0.8921568627
4503              L2     7     TE_peak        NR 0.0654205607
4504             MIR    19     TE_peak        NR 0.1900000000
4505             Alu   146     TE_peak   LR_open 0.4506172840
4506            ERV1   237     TE_peak   LR_open 0.3910891089
4507             MIR    19     TE_peak   LR_open 0.1532258065
4508             MIR    99     TE_peak   LR_open 1.0000000000
4509  Low_complexity    60     TE_peak   LR_open 1.0000000000
4510              L1   348     TE_peak        NR 0.8900255754
4511             Alu    35     TE_peak        NR 0.1776649746
4512            <NA>    NA not_TE_peak  EAR_open           NA
4513   Simple_repeat    41     TE_peak        NR 1.0000000000
4514   Simple_repeat    24     TE_peak        NR 1.0000000000
4515   Simple_repeat    20     TE_peak        NR 1.0000000000
4516   Simple_repeat   204     TE_peak        NR 1.0000000000
4517   Simple_repeat    30     TE_peak        NR 1.0000000000
4518            <NA>    NA not_TE_peak        NR           NA
4519             MIR    39     TE_peak        NR 0.2484076433
4520    TcMar-Tigger    19     TE_peak        NR 0.2000000000
4521   Simple_repeat    41     TE_peak        NR 1.0000000000
4522             MIR   149     TE_peak        NR 0.6803652968
4523             Alu    58     TE_peak   LR_open 0.1858974359
4524             Alu   172     TE_peak        NR 0.5676567657
4525             Alu    31     TE_peak  EAR_open 0.1026490066
4526   Simple_repeat    34     TE_peak  EAR_open 1.0000000000
4527            ERVL   400     TE_peak  EAR_open 1.0000000000
4528            ERVL   169     TE_peak  LR_close 0.7191489362
4529            ERVL   142     TE_peak  LR_close 1.0000000000
4530             Alu    52     TE_peak  ESR_open 0.4601769912
4531       ERVL-MaLR   193     TE_peak        NR 0.6069182390
4532              L2   139     TE_peak        NR 0.7473118280
4533              L2    87     TE_peak  LR_close 0.9354838710
4534            <NA>    NA not_TE_peak        NR           NA
4535     hAT-Charlie    55     TE_peak  LR_close 0.3642384106
4536            <NA>    NA not_TE_peak        NR           NA
4537            <NA>    NA not_TE_peak   LR_open           NA
4538            <NA>    NA not_TE_peak        NR           NA
4539            <NA>    NA not_TE_peak   not_mrc           NA
4540             Alu   269     TE_peak   LR_open 0.9853479853
4541              L2   109     TE_peak   LR_open 1.0000000000
4542            <NA>    NA not_TE_peak        NR           NA
4543             Alu    41     TE_peak ESR_close 0.1371237458
4544             MIR    82     TE_peak ESR_close 1.0000000000
4545            <NA>    NA not_TE_peak        NR           NA
4546             Alu    98     TE_peak        NR 0.5632183908
4547             MIR    91     TE_peak        NR 0.7647058824
4548              L2   158     TE_peak  LR_close 1.0000000000
4549             Alu    58     TE_peak  EAR_open 0.1883116883
4550             Alu    82     TE_peak        NR 0.6507936508
4551    TcMar-Tigger    77     TE_peak        NR 1.0000000000
4552             Alu    15     TE_peak        NR 0.0524475524
4553             Alu    45     TE_peak  ESR_open 0.1672862454
4554             Alu   303     TE_peak  ESR_open 1.0000000000
4555              L2   251     TE_peak  ESR_open 0.8070739550
4556              L1    36     TE_peak EAR_close 0.9000000000
4557             Alu   307     TE_peak EAR_close 1.0000000000
4558              L1    57     TE_peak EAR_close 1.0000000000
4559             Alu    80     TE_peak EAR_close 0.4040404040
4560              L2    27     TE_peak   LR_open 0.6136363636
4561             Alu   109     TE_peak ESR_close 0.4504132231
4562             Alu   123     TE_peak        NR 0.7409638554
4563              L1   647     TE_peak        NR 1.0000000000
4564              L1    40     TE_peak        NR 0.8510638298
4565             MIR    40     TE_peak        NR 0.2469135802
4566   Simple_repeat    73     TE_peak        NR 1.0000000000
4567             MIR    86     TE_peak  LR_close 1.0000000000
4568   Simple_repeat    40     TE_peak  LR_close 1.0000000000
4569   Simple_repeat    37     TE_peak  LR_close 1.0000000000
4570            <NA>    NA not_TE_peak        NR           NA
4571            <NA>    NA not_TE_peak        NR           NA
4572            <NA>    NA not_TE_peak        NR           NA
4573             Alu   157     TE_peak        NR 0.6709401709
4574              L2    43     TE_peak   LR_open 0.6825396825
4575    TcMar-Tigger   287     TE_peak   LR_open 1.0000000000
4576    TcMar-Tigger   149     TE_peak   LR_open 1.0000000000
4577             Alu    57     TE_peak   LR_open 0.1925675676
4578            <NA>    NA not_TE_peak        NR           NA
4579     hAT-Charlie    99     TE_peak        NR 1.0000000000
4580   Simple_repeat    38     TE_peak        NR 1.0000000000
4581             Alu    56     TE_peak  LR_close 0.1978798587
4582             Alu    77     TE_peak  LR_close 0.6875000000
4583   Simple_repeat   546     TE_peak        NR 0.8076923077
4584            <NA>    NA not_TE_peak  ESR_open           NA
4585             MIR    47     TE_peak        NR 0.3455882353
4586   Simple_repeat    28     TE_peak        NR 1.0000000000
4587              L2    38     TE_peak        NR 0.5135135135
4588             Alu   135     TE_peak        NR 1.0000000000
4589             Alu    55     TE_peak        NR 0.1827242525
4590             Alu    54     TE_peak        NR 0.1836734694
4591             MIR   175     TE_peak        NR 1.0000000000
4592             MIR    40     TE_peak        NR 0.2614379085
4593            <NA>    NA not_TE_peak   not_mrc           NA
4594   Simple_repeat    29     TE_peak        NR 1.0000000000
4595   Simple_repeat    84     TE_peak        NR 1.0000000000
4596              L2    49     TE_peak        NR 1.0000000000
4597              L2   111     TE_peak        NR 0.5842105263
4598            <NA>    NA not_TE_peak        NR           NA
4599              L2   288     TE_peak        NR 0.6385809313
4600  Low_complexity     3     TE_peak  EAR_open 0.0588235294
4601  Low_complexity    44     TE_peak  EAR_open 1.0000000000
4602            <NA>    NA not_TE_peak        NR           NA
4603              L2   183     TE_peak        NR 0.3780991736
4604             MIR    53     TE_peak        NR 0.5300000000
4605      hAT-Tip100    46     TE_peak        NR 1.0000000000
4606             Alu    49     TE_peak        NR 0.2737430168
4607            ERV1   516     TE_peak   LR_open 0.2763792180
4608            ERV1   211     TE_peak        NR 0.2747395833
4609            ERVK   860     TE_peak        NR 0.8617234469
4610       ERVL-MaLR   167     TE_peak  LR_close 1.0000000000
4611              L2    95     TE_peak  LR_close 1.0000000000
4612   Simple_repeat    28     TE_peak        NR 0.4057971014
4613            <NA>    NA not_TE_peak   LR_open           NA
4614     hAT-Charlie   239     TE_peak        NR 1.0000000000
4615             Alu    77     TE_peak        NR 0.2500000000
4616             Alu    94     TE_peak   LR_open 0.3143812709
4617              L2   224     TE_peak   LR_open 1.0000000000
4618             Alu   100     TE_peak        NR 0.3424657534
4619             MIR    76     TE_peak        NR 1.0000000000
4620   Simple_repeat    25     TE_peak        NR 1.0000000000
4621             Alu   189     TE_peak        NR 0.6279069767
4622              L1   212     TE_peak  EAR_open 0.9636363636
4623   Simple_repeat    36     TE_peak  EAR_open 1.0000000000
4624   Simple_repeat    19     TE_peak  EAR_open 1.0000000000
4625  Low_complexity    26     TE_peak  EAR_open 1.0000000000
4626   Simple_repeat    34     TE_peak  EAR_open 1.0000000000
4627              L1   307     TE_peak  EAR_open 1.0000000000
4628             Alu    53     TE_peak  EAR_open 0.3581081081
4629            ERVL   187     TE_peak        NR 1.0000000000
4630             Alu   304     TE_peak        NR 1.0000000000
4631             Alu    58     TE_peak        NR 0.2086330935
4632             Alu    72     TE_peak        NR 0.2352941176
4633     hAT-Charlie    89     TE_peak        NR 1.0000000000
4634       ERVL-MaLR   295     TE_peak        NR 0.9394904459
4635  Low_complexity    31     TE_peak   not_mrc 1.0000000000
4636             MIR   143     TE_peak   not_mrc 1.0000000000
4637             Alu   203     TE_peak   not_mrc 0.7518518519
4638            <NA>    NA not_TE_peak        NR           NA
4639              L1    94     TE_peak        NR 0.5497076023
4640             Alu   301     TE_peak        NR 1.0000000000
4641              L1    86     TE_peak        NR 0.3093525180
4642            ERVK   571     TE_peak        NR 0.5910973085
4643            <NA>    NA not_TE_peak        NR           NA
4644            <NA>    NA not_TE_peak        NR           NA
4645             Alu    24     TE_peak        NR 0.0813559322
4646              L2   219     TE_peak        NR 1.0000000000
4647             MIR   126     TE_peak        NR 1.0000000000
4648             MIR    83     TE_peak        NR 0.7904761905
4649             MIR    97     TE_peak        NR 0.7760000000
4650            <NA>    NA not_TE_peak ESR_close           NA
4651             MIR   111     TE_peak        NR 1.0000000000
4652             Alu    89     TE_peak   LR_open 0.3973214286
4653      hAT-Tip100   101     TE_peak   LR_open 1.0000000000
4654             MIR    71     TE_peak   LR_open 0.6228070175
4655            <NA>    NA not_TE_peak        NR           NA
4656             MIR    93     TE_peak        NR 0.6549295775
4657   Simple_repeat    77     TE_peak        NR 1.0000000000
4658   Simple_repeat    66     TE_peak        NR 1.0000000000
4659             MIR   142     TE_peak ESR_close 0.8114285714
4660             MIR     5     TE_peak ESR_close 0.0326797386
4661             MIR   181     TE_peak EAR_close 0.8190045249
4662   Simple_repeat    23     TE_peak EAR_close 0.6571428571
4663   Simple_repeat    32     TE_peak ESR_close 1.0000000000
4664     hAT-Charlie    63     TE_peak  ESR_open 0.5575221239
4665   Simple_repeat    36     TE_peak  ESR_open 1.0000000000
4666            <NA>    NA not_TE_peak        NR           NA
4667              L1    52     TE_peak   LR_open 0.1090146751
4668    TcMar-Tigger    35     TE_peak  LR_close 0.0784753363
4669            ERV1    53     TE_peak ESR_close 0.4649122807
4670              L1   149     TE_peak ESR_close 1.0000000000
4671            ERV1   393     TE_peak ESR_close 1.0000000000
4672              L2   118     TE_peak  LR_close 0.8939393939
4673              L2   195     TE_peak        NR 0.9653465347
4674             Alu   248     TE_peak ESR_close 0.7515151515
4675   Simple_repeat    42     TE_peak        NR 1.0000000000
4676   Simple_repeat    82     TE_peak        NR 1.0000000000
4677   Simple_repeat    44     TE_peak        NR 1.0000000000
4678             MIR   211     TE_peak        NR 0.9419642857
4679            <NA>    NA not_TE_peak  LR_close           NA
4680             MIR   120     TE_peak        NR 0.7843137255
4681   Simple_repeat    50     TE_peak        NR 1.0000000000
4682            <NA>    NA not_TE_peak        NR           NA
4683   Simple_repeat    29     TE_peak   LR_open 1.0000000000
4684             Alu   234     TE_peak   LR_open 1.0000000000
4685             MIR   133     TE_peak   LR_open 1.0000000000
4686             MIR    37     TE_peak EAR_close 0.2868217054
4687     hAT-Charlie   187     TE_peak        NR 1.0000000000
4688              L2   148     TE_peak        NR 1.0000000000
4689     hAT-Charlie    58     TE_peak        NR 0.6170212766
4690            ERV1   756     TE_peak   LR_open 0.3045930701
4691             Alu    84     TE_peak        NR 0.2745098039
4692             MIR   130     TE_peak        NR 1.0000000000
4693             Alu    23     TE_peak   LR_open 0.0804195804
4694             MIR    49     TE_peak   LR_open 0.5764705882
4695             Alu    87     TE_peak   LR_open 0.2890365449
4696            <NA>    NA not_TE_peak   LR_open           NA
4697   Simple_repeat   172     TE_peak        NR 1.0000000000
4698   Simple_repeat    79     TE_peak        NR 1.0000000000
4699   Simple_repeat    35     TE_peak  LR_close 1.0000000000
4700  Low_complexity    27     TE_peak  LR_close 1.0000000000
4701   Simple_repeat    34     TE_peak  LR_close 1.0000000000
4702             SVA   280     TE_peak  LR_close 0.1183431953
4703             SVA   679     TE_peak  ESR_open 0.2869822485
4704   Simple_repeat     4     TE_peak  ESR_open 0.1052631579
4705             CR1   275     TE_peak   LR_open 0.8675078864
4706             MIR   133     TE_peak        NR 1.0000000000
4707             MIR   157     TE_peak   LR_open 1.0000000000
4708             MIR    76     TE_peak   LR_open 1.0000000000
4709              L2    91     TE_peak   LR_open 0.7711864407
4710             MIR    80     TE_peak   LR_open 0.4494382022
4711     hAT-Charlie   168     TE_peak   LR_open 0.5793103448
4712            <NA>    NA not_TE_peak EAR_close           NA
4713        RTE-BovB    52     TE_peak EAR_close 0.2780748663
4714             MIR   222     TE_peak EAR_close 1.0000000000
4715             MIR   142     TE_peak        NR 0.6283185841
4716            <NA>    NA not_TE_peak   LR_open           NA
4717             Alu   280     TE_peak        NR 1.0000000000
4718             MIR   212     TE_peak        NR 1.0000000000
4719              L1    19     TE_peak        NR 0.1681415929
4720   Simple_repeat    39     TE_peak  LR_close 1.0000000000
4721       ERVL-MaLR   113     TE_peak   LR_open 0.6890243902
4722              L2    79     TE_peak   LR_open 1.0000000000
4723             MIR    95     TE_peak   LR_open 1.0000000000
4724             Alu   134     TE_peak   LR_open 0.7976190476
4725            ERV1   215     TE_peak  LR_close 0.9907834101
4726            ERV1   141     TE_peak  LR_close 1.0000000000
4727       ERVL-MaLR   227     TE_peak   LR_open 0.6412429379
4728       ERVL-MaLR    25     TE_peak   LR_open 0.0586854460
4729            <NA>    NA not_TE_peak EAR_close           NA
4730             MIR    74     TE_peak        NR 0.5967741935
4731              L2    50     TE_peak        NR 0.2092050209
4732             MIR   107     TE_peak   LR_open 1.0000000000
4733   Simple_repeat    25     TE_peak        NR 1.0000000000
4734             hAT     2     TE_peak  LR_close 0.0105263158
4735             MIR    72     TE_peak  LR_close 1.0000000000
4736            <NA>    NA not_TE_peak        NR           NA
4737             MIR   118     TE_peak        NR 1.0000000000
4738     hAT-Charlie   188     TE_peak  LR_close 1.0000000000
4739  Low_complexity    88     TE_peak        NR 1.0000000000
4740            ERVL   724     TE_peak   LR_open 0.5796637310
4741   Simple_repeat    54     TE_peak ESR_close 1.0000000000
4742             MIR    76     TE_peak ESR_close 0.5000000000
4743             MIR   151     TE_peak   LR_open 0.7947368421
4744             MIR   158     TE_peak        NR 0.7860696517
4745              L2   200     TE_peak        NR 0.1841620626
4746             Alu    46     TE_peak        NR 0.1538461538
4747             MIR     5     TE_peak        NR 0.0301204819
4748          Gypsy?     1     TE_peak        NR 0.0071428571
4749   Simple_repeat    29     TE_peak        NR 1.0000000000
4750   Simple_repeat    34     TE_peak        NR 1.0000000000
4751   Simple_repeat    99     TE_peak  EAR_open 1.0000000000
4752   Simple_repeat    42     TE_peak  EAR_open 1.0000000000
4753              L2    65     TE_peak  LR_close 0.1679586563
4754             MIR    94     TE_peak        NR 1.0000000000
4755            <NA>    NA not_TE_peak        NR           NA
4756             MIR     3     TE_peak  ESR_open 0.0275229358
4757   Simple_repeat   133     TE_peak  ESR_open 1.0000000000
4758       ERVL-MaLR   294     TE_peak        NR 0.6086956522
4759             MIR    85     TE_peak        NR 1.0000000000
4760            <NA>    NA not_TE_peak   LR_open           NA
4761             Alu    32     TE_peak   LR_open 0.1032258065
4762            <NA>    NA not_TE_peak  LR_close           NA
4763            <NA>    NA not_TE_peak EAR_close           NA
4764            <NA>    NA not_TE_peak        NR           NA
4765            <NA>    NA not_TE_peak        NR           NA
4766             MIR   118     TE_peak        NR 0.8872180451
4767   Simple_repeat   110     TE_peak        NR 1.0000000000
4768             MIR   165     TE_peak        NR 1.0000000000
4769             MIR    40     TE_peak        NR 1.0000000000
4770             Alu    73     TE_peak EAR_close 0.2393442623
4771             MIR   208     TE_peak EAR_close 0.9454545455
4772            <NA>    NA not_TE_peak        NR           NA
4773            <NA>    NA not_TE_peak  LR_close           NA
4774   Simple_repeat    31     TE_peak  LR_close 1.0000000000
4775     hAT-Charlie   144     TE_peak        NR 1.0000000000
4776              L2   170     TE_peak        NR 0.6614785992
4777             MIR    89     TE_peak   not_mrc 0.5460122699
4778             MIR    76     TE_peak        NR 0.3653846154
4779              L1   121     TE_peak        NR 0.2688888889
4780             MIR   112     TE_peak        NR 0.4609053498
4781   Simple_repeat    65     TE_peak        NR 1.0000000000
4782   Simple_repeat    46     TE_peak        NR 1.0000000000
4783   Simple_repeat    39     TE_peak   LR_open 1.0000000000
4784              L2    32     TE_peak        NR 0.2935779817
4785              L2   122     TE_peak   LR_open 1.0000000000
4786              L2   166     TE_peak   LR_open 0.8383838384
4787             MIR    12     TE_peak ESR_close 0.0594059406
4788   Simple_repeat    32     TE_peak        NR 1.0000000000
4789       ERVL-MaLR   240     TE_peak        NR 0.5128205128
4790   Simple_repeat    61     TE_peak   LR_open 1.0000000000
4791              L2   103     TE_peak   LR_open 0.3901515152
4792             MIR   111     TE_peak        NR 1.0000000000
4793   Simple_repeat    40     TE_peak        NR 1.0000000000
4794             MIR   126     TE_peak        NR 0.8076923077
4795             MIR    46     TE_peak  LR_close 0.1825396825
4796       ERVL-MaLR    22     TE_peak   LR_open 0.0586666667
4797              L2   306     TE_peak        NR 0.8315217391
4798             MIR    40     TE_peak    ESR_OC 0.2209944751
4799   Simple_repeat    30     TE_peak    ESR_OC 1.0000000000
4800             Alu    74     TE_peak        NR 0.3592233010
4801            <NA>    NA not_TE_peak        NR           NA
4802            <NA>    NA not_TE_peak        NR           NA
4803              L2   281     TE_peak EAR_close 0.9064516129
4804             MIR     4     TE_peak  LR_close 0.0207253886
4805              L2    51     TE_peak        NR 0.6144578313
4806              L2    76     TE_peak        NR 1.0000000000
4807             MIR    54     TE_peak   LR_open 0.4500000000
4808              L2   210     TE_peak   LR_open 1.0000000000
4809              L2   119     TE_peak   LR_open 1.0000000000
4810   Simple_repeat    30     TE_peak   LR_open 1.0000000000
4811            <NA>    NA not_TE_peak        NR           NA
4812             MIR    34     TE_peak ESR_close 0.1292775665
4813              L2   313     TE_peak ESR_close 0.6955555556
4814     hAT-Charlie    99     TE_peak        NR 0.8461538462
4815     hAT-Charlie   121     TE_peak        NR 1.0000000000
4816              L2    30     TE_peak  ESR_open 0.1153846154
4817              L2   584     TE_peak  ESR_open 1.0000000000
4818              L1   309     TE_peak   LR_open 0.9307228916
4819     hAT-Charlie   132     TE_peak        NR 1.0000000000
4820             MIR    49     TE_peak        NR 0.4224137931
4821             MIR    59     TE_peak        NR 0.5412844037
4822     hAT-Charlie    55     TE_peak        NR 0.5670103093
4823  Low_complexity    38     TE_peak        NR 1.0000000000
4824              L2   226     TE_peak   LR_open 1.0000000000
4825             MIR   161     TE_peak   LR_open 1.0000000000
4826              L2   373     TE_peak        NR 0.6442141623
4827              L2   101     TE_peak   LR_open 0.5287958115
4828   Simple_repeat    39     TE_peak   LR_open 1.0000000000
4829   Simple_repeat    36     TE_peak   LR_open 1.0000000000
4830     hAT-Charlie   191     TE_peak   LR_open 1.0000000000
4831             MIR    26     TE_peak   LR_open 0.2626262626
4832            <NA>    NA not_TE_peak        NR           NA
4833            <NA>    NA not_TE_peak ESR_close           NA
4834              L2    76     TE_peak  LR_close 1.0000000000
4835             MIR   137     TE_peak  LR_close 1.0000000000
4836             MIR   136     TE_peak        NR 0.8343558282
4837              L2   163     TE_peak        NR 0.8858695652
4838   Simple_repeat    26     TE_peak        NR 1.0000000000
4839             MIR   170     TE_peak        NR 1.0000000000
4840  Low_complexity     7     TE_peak        NR 0.1590909091
4841              L2   752     TE_peak  LR_close 0.7497507478
4842             MIR    74     TE_peak ESR_close 0.3378995434
4843            <NA>    NA not_TE_peak        NR           NA
4844             MIR    68     TE_peak ESR_close 0.4788732394
4845            <NA>    NA not_TE_peak  LR_close           NA
4846             MIR   146     TE_peak        NR 1.0000000000
4847   Simple_repeat    37     TE_peak        NR 1.0000000000
4848   Simple_repeat    36     TE_peak        NR 1.0000000000
4849   Simple_repeat    45     TE_peak        NR 1.0000000000
4850   Simple_repeat    55     TE_peak        NR 1.0000000000
4851   Simple_repeat   227     TE_peak   LR_open 0.9497907950
4852   Simple_repeat    39     TE_peak   LR_open 1.0000000000
4853   Simple_repeat    79     TE_peak   LR_open 0.9080459770
4854              L2   360     TE_peak   not_mrc 1.0000000000
4855              L2    81     TE_peak   not_mrc 1.0000000000
4856     hAT-Charlie     2     TE_peak        NR 0.0113636364
4857     hAT-Charlie   197     TE_peak        NR 1.0000000000
4858             MIR   178     TE_peak   not_mrc 0.7639484979
4859             MIR    80     TE_peak   not_mrc 1.0000000000
4860       ERVL-MaLR   307     TE_peak EAR_close 0.6504237288
4861   Simple_repeat    48     TE_peak ESR_close 1.0000000000
4862              L2    60     TE_peak ESR_close 0.1857585139
4863            <NA>    NA not_TE_peak        NR           NA
4864            <NA>    NA not_TE_peak  LR_close           NA
4865             MIR   229     TE_peak  LR_close 1.0000000000
4866             MIR   109     TE_peak  LR_close 0.7676056338
4867       ERVL-MaLR   214     TE_peak EAR_close 0.8842975207
4868            <NA>    NA not_TE_peak   not_mrc           NA
4869              L1   430     TE_peak        NR 0.1251455180
4870            <NA>    NA not_TE_peak        NR           NA
4871          Gypsy?   228     TE_peak        NR 1.0000000000
4872           Gypsy   179     TE_peak ESR_close 0.4231678487
4873              L2   103     TE_peak ESR_close 1.0000000000
4874            ERV1    80     TE_peak ESR_close 0.1864801865
4875       ERVL-MaLR    74     TE_peak        NR 0.2067039106
4876            ERV1   136     TE_peak        NR 1.0000000000
4877             Alu   304     TE_peak        NR 1.0000000000
4878            ERV1   284     TE_peak        NR 1.0000000000
4879            ERVL   379     TE_peak ESR_close 0.6035031847
4880  Low_complexity    39     TE_peak ESR_close 1.0000000000
4881              L2   126     TE_peak        NR 1.0000000000
4882             Alu    45     TE_peak        NR 0.1535836177
4883            <NA>    NA not_TE_peak        NR           NA
4884     hAT-Charlie     5     TE_peak        NR 0.0390625000
4885            <NA>    NA not_TE_peak        NR           NA
4886              L2    51     TE_peak        NR 0.4857142857
4887       ERVL-MaLR   372     TE_peak        NR 0.8752941176
4888            ERVL   145     TE_peak        NR 0.3452380952
4889              L2   288     TE_peak   LR_open 0.9142857143
4890              L2   118     TE_peak   LR_open 1.0000000000
4891   Simple_repeat    34     TE_peak   LR_open 1.0000000000
4892            ERVL    10     TE_peak   LR_open 0.1694915254
4893              L2   196     TE_peak        NR 0.2297772567
4894            <NA>    NA not_TE_peak ESR_close           NA
4895            <NA>    NA not_TE_peak        NR           NA
4896             MIR   114     TE_peak        NR 1.0000000000
4897            <NA>    NA not_TE_peak        NR           NA
4898   Simple_repeat   131     TE_peak        NR 1.0000000000
4899            <NA>    NA not_TE_peak ESR_close           NA
4900     hAT-Charlie    49     TE_peak   not_mrc 0.2112068966
4901             CR1    96     TE_peak   not_mrc 0.5581395349
4902            <NA>    NA not_TE_peak        NR           NA
4903       ERVL-MaLR   214     TE_peak        NR 0.5071090047
4904             MIR    52     TE_peak        NR 0.2023346304
4905   Simple_repeat     1     TE_peak ESR_close 0.0113636364
4906             CR1   274     TE_peak EAR_close 1.0000000000
4907            <NA>    NA not_TE_peak   LR_open           NA
4908     hAT-Charlie    72     TE_peak  LR_close 0.7659574468
4909              L2    90     TE_peak        NR 1.0000000000
4910             MIR    17     TE_peak        NR 0.0977011494
4911  Low_complexity    52     TE_peak        NR 1.0000000000
4912  Low_complexity    45     TE_peak        NR 1.0000000000
4913            <NA>    NA not_TE_peak        NR           NA
4914   Simple_repeat   377     TE_peak        NR 1.0000000000
4915   Simple_repeat    51     TE_peak        NR 1.0000000000
4916            <NA>    NA not_TE_peak        NR           NA
4917            <NA>    NA not_TE_peak        NR           NA
4918              L2    62     TE_peak ESR_close 0.7045454545
4919             MIR    73     TE_peak   LR_open 1.0000000000
4920   Simple_repeat    78     TE_peak   LR_open 1.0000000000
4921   Simple_repeat    41     TE_peak   LR_open 1.0000000000
4922              L2    93     TE_peak   LR_open 1.0000000000
4923   Simple_repeat    43     TE_peak        NR 1.0000000000
4924             MIR   140     TE_peak        NR 0.8536585366
4925              L2     9     TE_peak        NR 0.1551724138
4926             Alu   122     TE_peak        NR 0.6321243523
4927            <NA>    NA not_TE_peak        NR           NA
4928             MIR    80     TE_peak  ESR_open 0.5000000000
4929             Alu   100     TE_peak  ESR_open 0.3571428571
4930      hAT-Tip100    30     TE_peak        NR 0.1287553648
4931            ERV1   438     TE_peak  LR_close 0.3974591652
4932             Alu   249     TE_peak   LR_open 0.8217821782
4933             Alu   295     TE_peak   LR_open 1.0000000000
4934             Alu     6     TE_peak   LR_open 0.0280373832
4935   Simple_repeat    39     TE_peak        NR 1.0000000000
4936   Simple_repeat   130     TE_peak        NR 1.0000000000
4937   Simple_repeat    69     TE_peak        NR 1.0000000000
4938   Simple_repeat    43     TE_peak        NR 1.0000000000
4939            <NA>    NA not_TE_peak        NR           NA
4940            <NA>    NA not_TE_peak        NR           NA
4941       ERVL-MaLR   416     TE_peak        NR 0.3047619048
4942             Alu   164     TE_peak EAR_close 0.5857142857
4943             Alu    82     TE_peak EAR_close 1.0000000000
4944           Gypsy    91     TE_peak EAR_close 0.4396135266
4945              L2   148     TE_peak        NR 1.0000000000
4946             Alu    55     TE_peak  LR_close 0.2806122449
4947            ERVL   396     TE_peak  LR_close 1.0000000000
4948              L1   107     TE_peak  LR_close 0.6149425287
4949             Alu   255     TE_peak        NR 0.8557046980
4950              L1   128     TE_peak        NR 0.4942084942
4951            ERVL   190     TE_peak  LR_close 1.0000000000
4952            ERVL   223     TE_peak  LR_close 0.3626016260
4953              L2   342     TE_peak        NR 0.8321167883
4954            <NA>    NA not_TE_peak   LR_open           NA
4955             MIR   115     TE_peak        NR 1.0000000000
4956  Low_complexity    50     TE_peak        NR 0.5882352941
4957            <NA>    NA not_TE_peak  EAR_open           NA
4958             Alu   162     TE_peak   LR_open 1.0000000000
4959              L2    21     TE_peak   LR_open 0.1009615385
4960             MIR    23     TE_peak        NR 0.1321839080
4961             Alu   303     TE_peak        NR 0.9837662338
4962              L1   153     TE_peak ESR_close 0.4250000000
4963   Simple_repeat    24     TE_peak        NR 1.0000000000
4964   Simple_repeat    37     TE_peak  EAR_open 1.0000000000
4965             MIR   153     TE_peak  ESR_open 1.0000000000
4966              L2   174     TE_peak ESR_close 0.8169014085
4967              L2   111     TE_peak  LR_close 0.9173553719
4968             MIR    69     TE_peak        NR 0.3333333333
4969   Simple_repeat    17     TE_peak        NR 0.3269230769
4970  Low_complexity     6     TE_peak        NR 0.1200000000
4971            <NA>    NA not_TE_peak   LR_open           NA
4972   Simple_repeat    48     TE_peak  EAR_open 1.0000000000
4973   Simple_repeat    51     TE_peak   not_mrc 0.8360655738
4974            <NA>    NA not_TE_peak  ESR_open           NA
4975             Alu   286     TE_peak        NR 1.0000000000
4976             Alu   237     TE_peak        NR 0.8061224490
4977            ERVL   187     TE_peak        NR 1.0000000000
4978            ERVL   197     TE_peak        NR 1.0000000000
4979            ERVL    35     TE_peak        NR 0.0964187328
4980   Simple_repeat    46     TE_peak        NR 1.0000000000
4981             Alu    48     TE_peak        NR 0.1578947368
4982            <NA>    NA not_TE_peak   LR_open           NA
4983            <NA>    NA not_TE_peak   not_mrc           NA
4984            <NA>    NA not_TE_peak        NR           NA
4985              L2    63     TE_peak  LR_close 0.2413793103
4986            ERVL   308     TE_peak        NR 0.8346883469
4987      hAT-Tip100     2     TE_peak  LR_close 0.0055865922
4988             Alu    69     TE_peak        NR 0.2269736842
4989   Simple_repeat    29     TE_peak        NR 1.0000000000
4990   Simple_repeat   113     TE_peak        NR 1.0000000000
4991   Simple_repeat    26     TE_peak        NR 1.0000000000
4992   Simple_repeat    73     TE_peak        NR 1.0000000000
4993   Simple_repeat    25     TE_peak        NR 1.0000000000
4994       ERVL-MaLR   167     TE_peak  LR_close 0.6139705882
4995             Alu    97     TE_peak        NR 0.4663461538
4996              L2   108     TE_peak        NR 0.5000000000
4997   Simple_repeat    49     TE_peak        NR 1.0000000000
4998   Simple_repeat    44     TE_peak        NR 1.0000000000
4999   Simple_repeat     4     TE_peak        NR 0.1176470588
5000   Simple_repeat    10     TE_peak  LR_close 0.2000000000
5001              L2   129     TE_peak  LR_close 1.0000000000
5002   Simple_repeat    58     TE_peak  LR_close 1.0000000000
5003              L2    11     TE_peak   LR_open 0.1222222222
5004     hAT-Charlie   180     TE_peak   LR_open 1.0000000000
5005             MIR    36     TE_peak   LR_open 1.0000000000
5006             MIR   184     TE_peak   LR_open 1.0000000000
5007             Alu   260     TE_peak   LR_open 0.8552631579
5008   Simple_repeat    27     TE_peak  LR_close 1.0000000000
5009            <NA>    NA not_TE_peak ESR_close           NA
5010              L2    78     TE_peak        NR 1.0000000000
5011             MIR    52     TE_peak        NR 1.0000000000
5012            <NA>    NA not_TE_peak        NR           NA
5013            ERV1    21     TE_peak        NR 0.2530120482
5014             MIR    14     TE_peak        NR 0.1044776119
5015   Simple_repeat    65     TE_peak        NR 1.0000000000
5016    TcMar-Tigger    47     TE_peak        NR 1.0000000000
5017    TcMar-Tigger    55     TE_peak        NR 1.0000000000
5018    TcMar-Tigger    72     TE_peak        NR 1.0000000000
5019              L2   271     TE_peak        NR 1.0000000000
5020              L2    14     TE_peak        NR 0.0633484163
5021            <NA>    NA not_TE_peak        NR           NA
5022   Simple_repeat    31     TE_peak        NR 1.0000000000
5023             MIR    24     TE_peak        NR 0.2330097087
5024             MIR    57     TE_peak  LR_close 0.3275862069
5025              L2   123     TE_peak        NR 1.0000000000
5026   Simple_repeat   292     TE_peak   LR_open 0.4027586207
5027             MIR   159     TE_peak        NR 0.7327188940
5028            <NA>    NA not_TE_peak        NR           NA
5029             MIR    80     TE_peak        NR 0.3463203463
5030            <NA>    NA not_TE_peak ESR_close           NA
5031  Low_complexity    58     TE_peak        NR 1.0000000000
5032   Simple_repeat    20     TE_peak        NR 1.0000000000
5033  Low_complexity    40     TE_peak        NR 1.0000000000
5034  Low_complexity    58     TE_peak        NR 1.0000000000
5035   Simple_repeat    48     TE_peak ESR_close 1.0000000000
5036   Simple_repeat    55     TE_peak ESR_close 1.0000000000
5037             MIR    18     TE_peak ESR_close 0.0942408377
5038              L2   237     TE_peak ESR_close 0.8200692042
5039              L2   418     TE_peak        NR 0.6920529801
5040             MIR   112     TE_peak        NR 1.0000000000
5041             MIR    38     TE_peak   LR_open 0.3392857143
5042             MIR    68     TE_peak   LR_open 0.3505154639
5043            <NA>    NA not_TE_peak        NR           NA
5044  Low_complexity    38     TE_peak        NR 1.0000000000
5045             Alu    20     TE_peak        NR 0.0675675676
5046             MIR   113     TE_peak        NR 1.0000000000
5047     hAT-Charlie   235     TE_peak ESR_close 1.0000000000
5048    TcMar-Tigger   327     TE_peak ESR_close 0.5647668394
5049             MIR   215     TE_peak        NR 1.0000000000
5050            <NA>    NA not_TE_peak        NR           NA
5051            ERVL   481     TE_peak  LR_close 0.8321799308
5052             Alu   137     TE_peak  ESR_open 0.4612794613
5053             Alu    71     TE_peak   LR_open 0.5680000000
5054             Alu   200     TE_peak   LR_open 1.0000000000
5055              L2    97     TE_peak   LR_open 1.0000000000
5056             Alu   193     TE_peak   LR_open 0.6542372881
5057             Alu   117     TE_peak        NR 0.3774193548
5058              L2   204     TE_peak        NR 0.6315789474
5059            <NA>    NA not_TE_peak        NR           NA
5060             CR1    89     TE_peak        NR 1.0000000000
5061              L1   224     TE_peak  ESR_open 0.5423728814
5062             Alu    75     TE_peak   LR_open 0.2525252525
5063             Alu    69     TE_peak   LR_open 1.0000000000
5064              L1    63     TE_peak   LR_open 1.0000000000
5065             Alu   249     TE_peak   LR_open 0.8675958188
5066            <NA>    NA not_TE_peak        NR           NA
5067            <NA>    NA not_TE_peak        NR           NA
5068             Alu   263     TE_peak EAR_close 0.9460431655
5069             Alu    84     TE_peak EAR_close 1.0000000000
5070             MIR   148     TE_peak   LR_open 1.0000000000
5071              L2    44     TE_peak   LR_open 0.7096774194
5072            <NA>    NA not_TE_peak   not_mrc           NA
5073   Simple_repeat    48     TE_peak        NR 1.0000000000
5074   Simple_repeat     9     TE_peak        NR 1.0000000000
5075  Low_complexity    29     TE_peak        NR 1.0000000000
5076   Simple_repeat    38     TE_peak        NR 1.0000000000
5077             MIR   195     TE_peak        NR 1.0000000000
5078            <NA>    NA not_TE_peak  ESR_open           NA
5079             MIR   162     TE_peak        NR 1.0000000000
5080             MIR    68     TE_peak   LR_open 0.5112781955
5081            <NA>    NA not_TE_peak        NR           NA
5082             MIR   122     TE_peak        NR 1.0000000000
5083              L2    66     TE_peak        NR 1.0000000000
5084            <NA>    NA not_TE_peak   LR_open           NA
5085            <NA>    NA not_TE_peak   LR_open           NA
5086            <NA>    NA not_TE_peak  LR_close           NA
5087            <NA>    NA not_TE_peak        NR           NA
5088             MIR    51     TE_peak        NR 1.0000000000
5089   Simple_repeat    42     TE_peak        NR 1.0000000000
5090   Simple_repeat     8     TE_peak        NR 1.0000000000
5091             MIR   138     TE_peak        NR 1.0000000000
5092              L2    89     TE_peak        NR 0.2816455696
5093            ERV1  1047     TE_peak ESR_close 0.8512195122
5094       ERVL-MaLR    21     TE_peak        NR 0.1750000000
5095            ERV1   298     TE_peak ESR_close 0.6563876652
5096              L2   192     TE_peak   LR_open 0.5765765766
5097              L2   415     TE_peak   LR_open 0.7656826568
5098  Low_complexity    32     TE_peak        NR 1.0000000000
5099             MIR   172     TE_peak        NR 0.8349514563
5100             Alu    95     TE_peak        NR 0.2978056426
5101   Simple_repeat    39     TE_peak        NR 1.0000000000
5102             MIR   140     TE_peak        NR 0.6422018349
5103             MIR   197     TE_peak        NR 0.7576923077
5104             MIR   201     TE_peak        NR 1.0000000000
5105            <NA>    NA not_TE_peak   LR_open           NA
5106             MIR   167     TE_peak        NR 1.0000000000
5107             MIR   159     TE_peak        NR 0.7260273973
5108              L2   123     TE_peak        NR 0.3178294574
5109              L2   170     TE_peak        NR 0.1689860835
5110             MIR    39     TE_peak        NR 1.0000000000
5111            <NA>    NA not_TE_peak ESR_close           NA
5112            <NA>    NA not_TE_peak        NR           NA
5113            <NA>    NA not_TE_peak        NR           NA
5114   Simple_repeat   665     TE_peak  ESR_open 0.9693877551
5115            <NA>    NA not_TE_peak   LR_open           NA
5116       ERVL-MaLR    36     TE_peak        NR 0.0734693878
5117            <NA>    NA not_TE_peak  LR_close           NA
5118           Gypsy   184     TE_peak   LR_open 0.4986449864
5119       ERVL-MaLR   300     TE_peak ESR_close 0.7575757576
5120   Simple_repeat    45     TE_peak        NR 0.1654411765
5121            <NA>    NA not_TE_peak ESR_close           NA
5122             Alu   207     TE_peak        NR 0.6764705882
5123             MIR   192     TE_peak        NR 1.0000000000
5124             MIR    42     TE_peak        NR 0.1842105263
5125            <NA>    NA not_TE_peak ESR_close           NA
5126              L2   119     TE_peak  ESR_open 1.0000000000
5127            <NA>    NA not_TE_peak        NR           NA
5128            <NA>    NA not_TE_peak  LR_close           NA
5129            <NA>    NA not_TE_peak ESR_close           NA
5130   Simple_repeat    37     TE_peak   LR_open 1.0000000000
5131   Simple_repeat    82     TE_peak        NR 1.0000000000
5132   Simple_repeat    35     TE_peak        NR 1.0000000000
5133   Simple_repeat    43     TE_peak        NR 1.0000000000
5134            <NA>    NA not_TE_peak ESR_close           NA
5135            <NA>    NA not_TE_peak   LR_open           NA
5136              L2    61     TE_peak  LR_close 1.0000000000
5137              L2   143     TE_peak  LR_close 1.0000000000
5138            <NA>    NA not_TE_peak EAR_close           NA
5139            <NA>    NA not_TE_peak        NR           NA
5140           ERVL?   225     TE_peak  LR_close 0.9453781513
5141              L2   229     TE_peak  LR_close 0.9160000000
5142  Low_complexity   110     TE_peak        NR 1.0000000000
5143            <NA>    NA not_TE_peak   LR_open           NA
5144            ERVL   200     TE_peak        NR 0.4926108374
5145   Simple_repeat     2     TE_peak ESR_close 0.0434782609
5146   Simple_repeat   528     TE_peak  ESR_open 1.0000000000
5147   Simple_repeat    38     TE_peak  ESR_open 1.0000000000
5148              L1    74     TE_peak        NR 0.3109243697
5149              L2    83     TE_peak        NR 0.6194029851
5150       ERVL-MaLR   241     TE_peak ESR_close 0.5415730337
5151            <NA>    NA not_TE_peak ESR_close           NA
5152             Alu    68     TE_peak        NR 0.2251655629
5153              L2   173     TE_peak        NR 1.0000000000
5154    TcMar-Tigger     6     TE_peak        NR 0.0264317181
5155   hAT-Blackjack   190     TE_peak        NR 1.0000000000
5156   Simple_repeat    27     TE_peak        NR 1.0000000000
5157             Alu    29     TE_peak        NR 0.0979729730
5158     hAT-Charlie    33     TE_peak        NR 0.2750000000
5159              L2    14     TE_peak        NR 0.0486111111
5160             MIR    86     TE_peak        NR 0.8349514563
5161              L2   188     TE_peak        NR 0.8209606987
5162  Low_complexity   143     TE_peak        NR 1.0000000000
5163   Simple_repeat    42     TE_peak        NR 1.0000000000
5164            <NA>    NA not_TE_peak        NR           NA
5165            <NA>    NA not_TE_peak        NR           NA
5166             Alu   183     TE_peak        NR 0.6203389831
5167              L2    47     TE_peak        NR 1.0000000000
5168     hAT-Charlie     2     TE_peak  EAR_open 0.0163934426
5169   Simple_repeat    39     TE_peak  EAR_open 1.0000000000
5170   Simple_repeat    77     TE_peak  EAR_open 1.0000000000
5171   Simple_repeat    30     TE_peak  EAR_open 1.0000000000
5172              L2   335     TE_peak  EAR_open 0.8170731707
5173             Alu    71     TE_peak   LR_open 0.5378787879
5174             Alu     9     TE_peak        NR 0.0303030303
5175             MIR    93     TE_peak  LR_close 0.6690647482
5176            <NA>    NA not_TE_peak        NR           NA
5177             Alu    45     TE_peak   LR_open 0.1461038961
5178              L2    82     TE_peak        NR 1.0000000000
5179              L2     9     TE_peak        NR 0.0937500000
5180     hAT-Charlie    41     TE_peak        NR 0.1202346041
5181          Gypsy?   146     TE_peak        NR 0.6985645933
5182            <NA>    NA not_TE_peak        NR           NA
5183            <NA>    NA not_TE_peak        NR           NA
5184            <NA>    NA not_TE_peak        NR           NA
5185             Alu   269     TE_peak        NR 1.0000000000
5186            <NA>    NA not_TE_peak        NR           NA
5187          Gypsy?   175     TE_peak  LR_close 0.5485893417
5188             MIR    73     TE_peak        NR 0.4171428571
5189              L1   152     TE_peak        NR 0.2002635046
5190   Simple_repeat    78     TE_peak  LR_close 1.0000000000
5191             CR1   205     TE_peak        NR 0.7118055556
5192   Simple_repeat    41     TE_peak        NR 1.0000000000
5193            <NA>    NA not_TE_peak        NR           NA
5194            <NA>    NA not_TE_peak        NR           NA
5195              L2    56     TE_peak        NR 0.4242424242
5196              L2   187     TE_peak        NR 1.0000000000
5197             MIR    97     TE_peak        NR 1.0000000000
5198  Low_complexity    44     TE_peak        NR 1.0000000000
5199   Simple_repeat    26     TE_peak        NR 1.0000000000
5200            <NA>    NA not_TE_peak        NR           NA
5201            <NA>    NA not_TE_peak        NR           NA
5202             Alu    53     TE_peak   LR_open 0.1827586207
5203   Simple_repeat    18     TE_peak EAR_close 0.2195121951
5204             Alu   196     TE_peak EAR_close 1.0000000000
5205             Alu    14     TE_peak EAR_close 0.0457516340
5206    TcMar-Tigger   338     TE_peak        NR 1.0000000000
5207              L1    16     TE_peak        NR 0.1126760563
5208            <NA>    NA not_TE_peak        NR           NA
5209             MIR   127     TE_peak        NR 1.0000000000
5210             MIR    78     TE_peak        NR 0.6190476190
5211   Simple_repeat    34     TE_peak  LR_close 1.0000000000
5212            <NA>    NA not_TE_peak ESR_close           NA
5213     hAT-Charlie    35     TE_peak        NR 0.1822916667
5214     hAT-Charlie   199     TE_peak        NR 1.0000000000
5215             Alu   144     TE_peak        NR 0.4690553746
5216              L2    69     TE_peak        NR 0.8414634146
5217             Alu   264     TE_peak        NR 1.0000000000
5218             MIR    25     TE_peak        NR 0.2000000000
5219          hAT-Ac    40     TE_peak        NR 1.0000000000
5220   Simple_repeat    27     TE_peak  ESR_open 0.3802816901
5221      hAT-Tip100    88     TE_peak  ESR_open 1.0000000000
5222   Simple_repeat    59     TE_peak        NR 1.0000000000
5223  Low_complexity    65     TE_peak        NR 1.0000000000
5224  Low_complexity    28     TE_peak        NR 1.0000000000
5225             Alu    54     TE_peak        NR 0.1806020067
5226             Alu    53     TE_peak   LR_open 0.1802721088
5227     hAT-Charlie   176     TE_peak        NR 0.8627450980
5228             Alu    31     TE_peak        NR 0.1201550388
5229   Simple_repeat    38     TE_peak        NR 1.0000000000
5230         Unknown    94     TE_peak        NR 1.0000000000
5231   Simple_repeat    45     TE_peak        NR 1.0000000000
5232   Simple_repeat    30     TE_peak        NR 1.0000000000
5233   Simple_repeat    42     TE_peak   LR_open 1.0000000000
5234   Simple_repeat    61     TE_peak   LR_open 1.0000000000
5235   Simple_repeat   104     TE_peak   LR_open 1.0000000000
5236   Simple_repeat    31     TE_peak   LR_open 1.0000000000
5237              L2   398     TE_peak        NR 1.0000000000
5238   Simple_repeat    52     TE_peak   LR_open 0.6190476190
5239            ERVL   402     TE_peak   LR_open 1.0000000000
5240   Simple_repeat    25     TE_peak ESR_close 1.0000000000
5241             MIR   209     TE_peak  LR_close 0.9812206573
5242  Low_complexity    34     TE_peak        NR 0.5230769231
5243             MIR   106     TE_peak  LR_close 1.0000000000
5244              L2   234     TE_peak   LR_open 1.0000000000
5245            <NA>    NA not_TE_peak   LR_open           NA
5246             MIR   157     TE_peak        NR 1.0000000000
5247            ERVL   321     TE_peak EAR_close 0.8722826087
5248            <NA>    NA not_TE_peak  LR_close           NA
5249            <NA>    NA not_TE_peak  LR_close           NA
5250   Simple_repeat    46     TE_peak        NR 1.0000000000
5251            <NA>    NA not_TE_peak  LR_close           NA
5252              L1    51     TE_peak   LR_open 0.2670157068
5253   Simple_repeat    22     TE_peak   LR_open 1.0000000000
5254              L2    48     TE_peak EAR_close 1.0000000000
5255             MIR    43     TE_peak        NR 0.3981481481
5256              L2     9     TE_peak        NR 0.0299003322
5257            ERVL   280     TE_peak ESR_close 1.0000000000
5258            ERVL    12     TE_peak ESR_close 0.0991735537
5259            <NA>    NA not_TE_peak        NR           NA
5260   Simple_repeat    26     TE_peak EAR_close 1.0000000000
5261   Simple_repeat    72     TE_peak   LR_open 1.0000000000
5262            ERVL   130     TE_peak ESR_close 0.5855855856
5263             Alu    36     TE_peak ESR_close 0.1309090909
5264   Simple_repeat    19     TE_peak ESR_close 1.0000000000
5265             MIR    48     TE_peak ESR_close 0.2891566265
5266  Low_complexity    67     TE_peak        NR 1.0000000000
5267             MIR    81     TE_peak        NR 0.3838862559
5268           Gypsy   440     TE_peak        NR 1.0000000000
5269             Alu   162     TE_peak        NR 0.5276872964
5270     hAT-Charlie    32     TE_peak  LR_close 0.4923076923
5271             MIR    63     TE_peak  LR_close 1.0000000000
5272    TcMar-Tigger   294     TE_peak   LR_open 0.5345454545
5273              L1    57     TE_peak   LR_open 0.0413943355
5274             MIR   150     TE_peak ESR_close 0.7500000000
5275              L2   386     TE_peak        NR 1.0000000000
5276             MIR   128     TE_peak        NR 0.8152866242
5277            <NA>    NA not_TE_peak ESR_close           NA
5278            <NA>    NA not_TE_peak  EAR_open           NA
5279             MIR    97     TE_peak        NR 1.0000000000
5280       ERVL-MaLR   301     TE_peak   LR_open 0.7859007833
5281            <NA>    NA not_TE_peak        NR           NA
5282   Simple_repeat    64     TE_peak        NR 1.0000000000
5283   Simple_repeat    12     TE_peak        NR 1.0000000000
5284   Simple_repeat    22     TE_peak        NR 1.0000000000
5285   Simple_repeat    26     TE_peak        NR 1.0000000000
5286   Simple_repeat    80     TE_peak        NR 1.0000000000
5287            <NA>    NA not_TE_peak        NR           NA
5288            <NA>    NA not_TE_peak   LR_open           NA
5289            <NA>    NA not_TE_peak        NR           NA
5290              L1    58     TE_peak        NR 0.4000000000
5291             Alu    60     TE_peak        NR 0.2419354839
5292             MIR   136     TE_peak        NR 1.0000000000
5293             Alu    12     TE_peak        NR 0.0383386581
5294              L1   117     TE_peak        NR 1.0000000000
5295             MIR    95     TE_peak        NR 1.0000000000
5296             Alu   256     TE_peak        NR 0.9446494465
5297            <NA>    NA not_TE_peak        NR           NA
5298             Alu   148     TE_peak  LR_close 0.4743589744
5299   Simple_repeat    25     TE_peak  LR_close 1.0000000000
5300       ERVL-MaLR   247     TE_peak  LR_close 0.4243986254
5301             Alu   142     TE_peak   LR_open 0.4733333333
5302              L2   292     TE_peak   LR_open 1.0000000000
5303             Alu    58     TE_peak   LR_open 0.1986301370
5304       ERVL-MaLR   174     TE_peak   LR_open 1.0000000000
5305            <NA>    NA not_TE_peak  LR_close           NA
5306           RTE-X    53     TE_peak   LR_open 1.0000000000
5307     hAT-Charlie    52     TE_peak        NR 1.0000000000
5308  Low_complexity    39     TE_peak        NR 1.0000000000
5309             Alu    53     TE_peak   LR_open 0.1778523490
5310             MIR   149     TE_peak   LR_open 0.6742081448
5311   Simple_repeat    55     TE_peak        NR 1.0000000000
5312            ERVL    44     TE_peak        NR 0.5000000000
5313   Simple_repeat    54     TE_peak        NR 1.0000000000
5314             Alu   288     TE_peak        NR 1.0000000000
5315              L2   197     TE_peak        NR 1.0000000000
5316             Alu    76     TE_peak        NR 0.2620689655
5317     hAT-Charlie   207     TE_peak        NR 1.0000000000
5318             Alu   105     TE_peak        NR 0.7777777778
5319             Alu    61     TE_peak        NR 0.2013201320
5320             Alu   306     TE_peak        NR 1.0000000000
5321              L1   214     TE_peak        NR 1.0000000000
5322             Alu   105     TE_peak        NR 0.3343949045
5323             Alu   132     TE_peak   LR_open 0.8000000000
5324              L2   136     TE_peak   LR_open 1.0000000000
5325            <NA>    NA not_TE_peak        NR           NA
5326   Simple_repeat    42     TE_peak  EAR_open 1.0000000000
5327   Simple_repeat    30     TE_peak  EAR_open 1.0000000000
5328            <NA>    NA not_TE_peak   LR_open           NA
5329             MIR    66     TE_peak        NR 1.0000000000
5330      hAT-Tip100   112     TE_peak        NR 1.0000000000
5331              L1    31     TE_peak        NR 0.2672413793
5332             MIR    66     TE_peak        NR 0.2920353982
5333             MIR    64     TE_peak        NR 1.0000000000
5334            <NA>    NA not_TE_peak        NR           NA
5335   Simple_repeat    34     TE_peak  EAR_open 1.0000000000
5336   Simple_repeat    19     TE_peak  EAR_open 1.0000000000
5337             Alu    27     TE_peak   LR_open 0.1764705882
5338              L2   432     TE_peak   LR_open 0.2462941847
5339   Simple_repeat    34     TE_peak   LR_open 1.0000000000
5340            <NA>    NA not_TE_peak  ESR_open           NA
5341            <NA>    NA not_TE_peak  LR_close           NA
5342            <NA>    NA not_TE_peak        NR           NA
5343   Simple_repeat    47     TE_peak        NR 1.0000000000
5344             MIR    57     TE_peak        NR 0.2923076923
5345     hAT-Charlie   156     TE_peak        NR 1.0000000000
5346             MIR    36     TE_peak        NR 0.1578947368
5347            <NA>    NA not_TE_peak  EAR_open           NA
5348              L2   120     TE_peak   LR_open 0.5128205128
5349             Alu    43     TE_peak        NR 0.1279761905
5350            <NA>    NA not_TE_peak   LR_open           NA
5351            <NA>    NA not_TE_peak   LR_open           NA
5352            <NA>    NA not_TE_peak        NR           NA
5353             Alu    64     TE_peak   LR_open 0.2133333333
5354             Alu   163     TE_peak   LR_open 1.0000000000
5355              L2   163     TE_peak   LR_open 1.0000000000
5356             MIR     8     TE_peak   LR_open 0.1333333333
5357             MIR   221     TE_peak   not_mrc 0.9735682819
5358            <NA>    NA not_TE_peak   LR_open           NA
5359            <NA>    NA not_TE_peak   LR_open           NA
5360   Simple_repeat    20     TE_peak        NR 0.5405405405
5361             Alu   292     TE_peak        NR 1.0000000000
5362   Simple_repeat    41     TE_peak        NR 1.0000000000
5363             Alu    62     TE_peak        NR 0.2006472492
5364            <NA>    NA not_TE_peak        NR           NA
5365              L2    23     TE_peak        NR 0.0923694779
5366             Alu   295     TE_peak        NR 1.0000000000
5367             Alu    57     TE_peak        NR 0.1832797428
5368            <NA>    NA not_TE_peak        NR           NA
5369             SVA   441     TE_peak  ESR_open 0.2679222357
5370             Alu   180     TE_peak  ESR_open 0.6405693950
5371            <NA>    NA not_TE_peak  LR_close           NA
5372  Low_complexity    40     TE_peak   LR_open 1.0000000000
5373             MIR    57     TE_peak        NR 0.3064516129
5374              L2    80     TE_peak        NR 0.4301075269
5375             MIR    57     TE_peak        NR 1.0000000000
5376              L2    90     TE_peak        NR 1.0000000000
5377   hAT-Blackjack    87     TE_peak        NR 1.0000000000
5378            <NA>    NA not_TE_peak        NR           NA
5379            <NA>    NA not_TE_peak  ESR_open           NA
5380            <NA>    NA not_TE_peak   LR_open           NA
5381             Alu    62     TE_peak        NR 0.2026143791
5382              L2   215     TE_peak   LR_open 0.6039325843
5383            <NA>    NA not_TE_peak        NR           NA
5384   Simple_repeat    33     TE_peak   LR_open 1.0000000000
5385       ERVL-MaLR   367     TE_peak   LR_open 0.8265765766
5386            <NA>    NA not_TE_peak        NR           NA
5387            <NA>    NA not_TE_peak   LR_open           NA
5388             MIR   245     TE_peak        NR 0.9919028340
5389             Alu   117     TE_peak        NR 0.3836065574
5390            ERV1   336     TE_peak        NR 0.5685279188
5391            <NA>    NA not_TE_peak   LR_open           NA
5392            <NA>    NA not_TE_peak   LR_open           NA
5393            <NA>    NA not_TE_peak        NR           NA
5394             Alu   115     TE_peak  EAR_open 0.5088495575
5395             Alu    60     TE_peak        NR 0.2033898305
5396            <NA>    NA not_TE_peak        NR           NA
5397            <NA>    NA not_TE_peak        NR           NA
5398            <NA>    NA not_TE_peak        NR           NA
5399             Alu    71     TE_peak        NR 0.2374581940
5400     hAT-Charlie   117     TE_peak        NR 1.0000000000
5401  Low_complexity    76     TE_peak        NR 1.0000000000
5402   Simple_repeat    10     TE_peak        NR 1.0000000000
5403   Simple_repeat    42     TE_peak        NR 1.0000000000
5404   Simple_repeat    22     TE_peak        NR 1.0000000000
5405   Simple_repeat    39     TE_peak        NR 1.0000000000
5406   Simple_repeat    44     TE_peak        NR 1.0000000000
5407            <NA>    NA not_TE_peak        NR           NA
5408            <NA>    NA not_TE_peak  ESR_open           NA
5409            <NA>    NA not_TE_peak  LR_close           NA
5410            <NA>    NA not_TE_peak        NR           NA
5411             Alu   121     TE_peak   LR_open 0.4464944649
5412            <NA>    NA not_TE_peak ESR_close           NA
5413             Alu   177     TE_peak        NR 0.5900000000
5414             Alu   162     TE_peak        NR 1.0000000000
5415             Alu    73     TE_peak        NR 0.2417218543
5416             Alu   158     TE_peak   LR_open 0.5146579805
5417            <NA>    NA not_TE_peak        NR           NA
5418              L2   201     TE_peak  LR_close 0.9054054054
5419             Alu   114     TE_peak        NR 0.6404494382
5420              L2   264     TE_peak        NR 1.0000000000
5421             Alu    63     TE_peak        NR 0.2086092715
5422              L2    98     TE_peak        NR 1.0000000000
5423             MIR   113     TE_peak        NR 1.0000000000
5424            <NA>    NA not_TE_peak        NR           NA
5425            <NA>    NA not_TE_peak        NR           NA
5426             MIR    33     TE_peak        NR 0.1764705882
5427              L2   119     TE_peak        NR 1.0000000000
5428   Simple_repeat    40     TE_peak        NR 1.0000000000
5429   Simple_repeat    33     TE_peak        NR 1.0000000000
5430   Simple_repeat     6     TE_peak        NR 0.1132075472
5431              L2    55     TE_peak        NR 0.3179190751
5432            <NA>    NA not_TE_peak        NR           NA
5433            <NA>    NA not_TE_peak  EAR_open           NA
5434             Alu    42     TE_peak        NR 0.1409395973
5435             Alu   156     TE_peak   LR_open 0.5131578947
5436              L1    18     TE_peak   LR_open 1.0000000000
5437             Alu    91     TE_peak   LR_open 0.3181818182
5438             Alu    52     TE_peak        NR 0.1774744027
5439              L1    64     TE_peak        NR 1.0000000000
5440             Alu   143     TE_peak        NR 0.5296296296
5441              L2    36     TE_peak        NR 0.0591133005
5442              L2   153     TE_peak        NR 1.0000000000
5443     hAT-Charlie   145     TE_peak        NR 0.2561837456
5444              L2    97     TE_peak        NR 1.0000000000
5445              L2   342     TE_peak        NR 1.0000000000
5446             Alu    54     TE_peak        NR 0.1788079470
5447            <NA>    NA not_TE_peak  EAR_open           NA
5448            <NA>    NA not_TE_peak        NR           NA
5449            <NA>    NA not_TE_peak  LR_close           NA
5450             MIR   104     TE_peak        NR 1.0000000000
5451  Low_complexity   107     TE_peak        NR 1.0000000000
5452   Simple_repeat    63     TE_peak        NR 1.0000000000
5453   Simple_repeat    76     TE_peak        NR 1.0000000000
5454   Simple_repeat    40     TE_peak        NR 1.0000000000
5455   Simple_repeat    61     TE_peak        NR 1.0000000000
5456     hAT-Charlie    46     TE_peak        NR 0.3865546218
5457            ERVL    71     TE_peak        NR 0.1682464455
5458             Alu   129     TE_peak        NR 0.4623655914
5459            ERVL    76     TE_peak        NR 0.1968911917
5460              L2   610     TE_peak        NR 1.0000000000
5461              L2   243     TE_peak        NR 0.4347048301
5462             MIR   173     TE_peak        NR 0.8357487923
5463            <NA>    NA not_TE_peak ESR_close           NA
5464   Simple_repeat    41     TE_peak EAR_close 1.0000000000
5465  Low_complexity    56     TE_peak EAR_close 1.0000000000
5466   Simple_repeat    43     TE_peak EAR_close 1.0000000000
5467   Simple_repeat    32     TE_peak        NR 1.0000000000
5468   Simple_repeat    27     TE_peak  LR_close 0.3333333333
5469     hAT-Charlie   159     TE_peak        NR 1.0000000000
5470            <NA>    NA not_TE_peak        NR           NA
5471   Simple_repeat     4     TE_peak        NR 0.0370370370
5472   Simple_repeat    25     TE_peak        NR 1.0000000000
5473  Low_complexity    31     TE_peak        NR 1.0000000000
5474           ERVL?   164     TE_peak        NR 0.6212121212
5475            ERVL   179     TE_peak        NR 1.0000000000
5476            ERV1   276     TE_peak        NR 0.6634615385
5477   Simple_repeat    47     TE_peak        NR 1.0000000000
5478       ERVL-MaLR    50     TE_peak        NR 1.0000000000
5479             MIR    92     TE_peak        NR 0.3579766537
5480            ERVL    52     TE_peak   not_mrc 0.4521739130
5481              L2   185     TE_peak   not_mrc 1.0000000000
5482            ERVL   140     TE_peak   not_mrc 1.0000000000
5483            ERVL   109     TE_peak   not_mrc 0.2003676471
5484             MIR    58     TE_peak        NR 0.5043478261
5485             Alu    82     TE_peak        NR 0.7321428571
5486            <NA>    NA not_TE_peak        NR           NA
5487     hAT-Charlie     8     TE_peak        NR 0.0888888889
5488              L2   141     TE_peak        NR 0.3248847926
5489   Simple_repeat    18     TE_peak   LR_open 0.3600000000
5490  Low_complexity    78     TE_peak   LR_open 1.0000000000
5491  Low_complexity    51     TE_peak   LR_open 1.0000000000
5492              L2    67     TE_peak   LR_open 1.0000000000
5493             MIR    55     TE_peak   LR_open 0.2777777778
5494             MIR    53     TE_peak  ESR_open 1.0000000000
5495             MIR    76     TE_peak        NR 0.5135135135
5496             MIR   168     TE_peak        NR 1.0000000000
5497             MIR    39     TE_peak   LR_open 1.0000000000
5498             MIR   181     TE_peak   LR_open 1.0000000000
5499             MIR    75     TE_peak   LR_open 0.5067567568
5500             Alu    39     TE_peak        NR 0.1477272727
5501             MIR    34     TE_peak        NR 0.1611374408
5502             MIR   171     TE_peak        NR 0.7844036697
5503             MIR   206     TE_peak        NR 1.0000000000
5504             Alu   152     TE_peak        NR 0.4967320261
5505             MIR   188     TE_peak        NR 1.0000000000
5506             MIR    79     TE_peak        NR 0.3495575221
5507            <NA>    NA not_TE_peak ESR_close           NA
5508   Simple_repeat    43     TE_peak        NR 1.0000000000
5509  Low_complexity    35     TE_peak        NR 1.0000000000
5510             MIR    85     TE_peak        NR 0.8500000000
5511            ERV1    71     TE_peak        NR 1.0000000000
5512   hAT-Blackjack   109     TE_peak        NR 1.0000000000
5513             Alu   182     TE_peak        NR 0.5814696486
5514       ERVL-MaLR    15     TE_peak        NR 0.0602409639
5515             Alu   116     TE_peak        NR 1.0000000000
5516             MIR    54     TE_peak        NR 1.0000000000
5517             MIR    90     TE_peak        NR 1.0000000000
5518             CR1   461     TE_peak        NR 1.0000000000
5519             MIR     8     TE_peak        NR 0.1012658228
5520            <NA>    NA not_TE_peak        NR           NA
5521            <NA>    NA not_TE_peak   LR_open           NA
5522             Alu   190     TE_peak   LR_open 0.8050847458
5523             MIR   129     TE_peak   LR_open 1.0000000000
5524             MIR   136     TE_peak        NR 0.5762711864
5525              L2   240     TE_peak        NR 1.0000000000
5526             Alu    59     TE_peak        NR 0.4370370370
5527            ERV1   412     TE_peak   LR_open 0.8000000000
5528     hAT-Charlie   155     TE_peak   LR_open 1.0000000000
5529              L2    11     TE_peak   LR_open 0.1089108911
5530             Alu    43     TE_peak   LR_open 0.1457627119
5531   Simple_repeat    20     TE_peak   LR_open 1.0000000000
5532             CR1   274     TE_peak   LR_open 0.9820788530
5533       ERVL-MaLR    84     TE_peak   LR_open 0.6131386861
5534            <NA>    NA not_TE_peak        NR           NA
5535            <NA>    NA not_TE_peak        NR           NA
5536             MIR    99     TE_peak        NR 0.4647887324
5537              L2     5     TE_peak   LR_open 0.0183150183
5538             CR1   136     TE_peak   LR_open 1.0000000000
5539             CR1    18     TE_peak   LR_open 0.2195121951
5540             Alu   240     TE_peak   LR_open 0.8791208791
5541             Alu    75     TE_peak   LR_open 0.2329192547
5542             Alu    24     TE_peak  LR_close 0.0745341615
5543              L2   111     TE_peak  LR_close 0.4352941176
5544   Simple_repeat    44     TE_peak    ESR_OC 1.0000000000
5545             Alu    45     TE_peak   LR_open 0.1551724138
5546             MIR   244     TE_peak   LR_open 1.0000000000
5547             MIR   192     TE_peak   LR_open 1.0000000000
5548             Alu   221     TE_peak        NR 0.7620689655
5549              L2   103     TE_peak   LR_open 1.0000000000
5550              L2    10     TE_peak   LR_open 0.1612903226
5551             Alu    71     TE_peak        NR 0.2358803987
5552              L1   127     TE_peak        NR 0.2326007326
5553            ERVK   477     TE_peak  EAR_open 0.4774774775
5554             MIR   222     TE_peak        NR 1.0000000000
5555             MIR   119     TE_peak        NR 1.0000000000
5556              L2    35     TE_peak        NR 0.2892561983
5557  Low_complexity    53     TE_peak        NR 1.0000000000
5558              L2   101     TE_peak   LR_open 1.0000000000
5559            <NA>    NA not_TE_peak        NR           NA
5560             Alu   294     TE_peak   LR_open 1.0000000000
5561            <NA>    NA not_TE_peak   LR_open           NA
5562     hAT-Charlie   221     TE_peak        NR 1.0000000000
5563             Alu   120     TE_peak   LR_open 0.3870967742
5564             MIR    73     TE_peak   LR_open 1.0000000000
5565             MIR   146     TE_peak   LR_open 1.0000000000
5566             Alu   214     TE_peak   LR_open 0.6925566343
5567       ERVL-MaLR   161     TE_peak   LR_open 1.0000000000
5568             MIR   143     TE_peak        NR 1.0000000000
5569   Simple_repeat   210     TE_peak  ESR_open 0.8936170213
5570            <NA>    NA not_TE_peak ESR_close           NA
5571  Low_complexity    29     TE_peak        NR 1.0000000000
5572             MIR   232     TE_peak        NR 1.0000000000
5573             Alu   275     TE_peak        NR 0.8957654723
5574             MIR   159     TE_peak        NR 1.0000000000
5575              L1   188     TE_peak        NR 0.2596685083
5576             MIR    49     TE_peak        NR 0.4949494949
5577   Simple_repeat    62     TE_peak        NR 1.0000000000
5578  Low_complexity    56     TE_peak        NR 1.0000000000
5579   Simple_repeat    29     TE_peak        NR 1.0000000000
5580  Low_complexity    47     TE_peak        NR 1.0000000000
5581            <NA>    NA not_TE_peak        NR           NA
5582             CR1   132     TE_peak  LR_close 1.0000000000
5583             Alu    83     TE_peak        NR 0.7545454545
5584       ERVL-MaLR   264     TE_peak        NR 1.0000000000
5585            ERVL   197     TE_peak        NR 1.0000000000
5586            ERVL   423     TE_peak        NR 0.9591836735
5587             MIR     2     TE_peak        NR 0.0135135135
5588              L2    22     TE_peak        NR 0.1078431373
5589   Simple_repeat    39     TE_peak        NR 1.0000000000
5590            <NA>    NA not_TE_peak        NR           NA
5591              L2    80     TE_peak        NR 0.4848484848
5592            <NA>    NA not_TE_peak        NR           NA
5593             Alu    56     TE_peak        NR 0.1917808219
5594     hAT-Charlie   116     TE_peak        NR 1.0000000000
5595             Alu    37     TE_peak        NR 0.1262798635
5596            ERV1   313     TE_peak        NR 0.8346666667
5597            <NA>    NA not_TE_peak   not_mrc           NA
5598    TcMar-Tigger    38     TE_peak        NR 0.3304347826
5599              L1    87     TE_peak        NR 1.0000000000
5600            ERVL   472     TE_peak        NR 1.0000000000
5601            ERVL    46     TE_peak        NR 0.1614035088
5602            <NA>    NA not_TE_peak ESR_close           NA
5603   Simple_repeat    40     TE_peak   LR_open 1.0000000000
5604            <NA>    NA not_TE_peak ESR_close           NA
5605             MIR    82     TE_peak ESR_close 0.5093167702
5606             MIR     3     TE_peak ESR_close 0.0157068063
5607            <NA>    NA not_TE_peak        NR           NA
5608       ERVL-MaLR    73     TE_peak   LR_open 0.1597374179
5609              L2   164     TE_peak   LR_open 1.0000000000
5610              L2   454     TE_peak  LR_close 1.0000000000
5611              L2   318     TE_peak  LR_close 0.3878048780
5612             MIR    37     TE_peak        NR 0.1321428571
5613   Simple_repeat    34     TE_peak  LR_close 1.0000000000
5614             MIR    98     TE_peak  LR_close 1.0000000000
5615            <NA>    NA not_TE_peak        NR           NA
5616            <NA>    NA not_TE_peak        NR           NA
5617             Alu    91     TE_peak        NR 0.3137931034
5618     hAT-Charlie   128     TE_peak        NR 1.0000000000
5619            <NA>    NA not_TE_peak        NR           NA
5620             MIR   231     TE_peak  ESR_open 1.0000000000
5621             Alu    77     TE_peak   LR_open 0.2558139535
5622    TcMar-Tigger   115     TE_peak   LR_open 1.0000000000
5623             Alu   217     TE_peak   LR_open 0.8097014925
5624            <NA>    NA not_TE_peak  LR_close           NA
5625              L2   101     TE_peak   LR_open 1.0000000000
5626             Alu    27     TE_peak   LR_open 0.1888111888
5627            <NA>    NA not_TE_peak        NR           NA
5628             MIR    53     TE_peak        NR 1.0000000000
5629          hAT-Ac    71     TE_peak        NR 1.0000000000
5630            <NA>    NA not_TE_peak   LR_open           NA
5631             MIR   175     TE_peak  LR_close 0.9358288770
5632              L2   131     TE_peak  LR_close 1.0000000000
5633            <NA>    NA not_TE_peak   LR_open           NA
5634            <NA>    NA not_TE_peak        NR           NA
5635             MIR    51     TE_peak        NR 0.2246696035
5636              L2   276     TE_peak        NR 1.0000000000
5637              L2   115     TE_peak        NR 0.9913793103
5638   Simple_repeat    17     TE_peak        NR 0.7083333333
5639   Simple_repeat    60     TE_peak        NR 1.0000000000
5640   Simple_repeat    43     TE_peak        NR 1.0000000000
5641             MIR   126     TE_peak        NR 1.0000000000
5642              L2    49     TE_peak        NR 1.0000000000
5643            <NA>    NA not_TE_peak ESR_close           NA
5644      hAT-Tip100    88     TE_peak        NR 1.0000000000
5645             MIR    83     TE_peak        NR 1.0000000000
5646            <NA>    NA not_TE_peak EAR_close           NA
5647             MIR     8     TE_peak        NR 0.0941176471
5648      hAT-Tip100   100     TE_peak   LR_open 1.0000000000
5649            <NA>    NA not_TE_peak   LR_open           NA
5650            <NA>    NA not_TE_peak   LR_open           NA
5651             Alu    86     TE_peak        NR 0.5657894737
5652             MIR   160     TE_peak        NR 1.0000000000
5653    TcMar-Tigger   102     TE_peak        NR 1.0000000000
5654              L2    76     TE_peak        NR 0.1233766234
5655            <NA>    NA not_TE_peak        NR           NA
5656             Alu    32     TE_peak  LR_close 0.1056105611
5657             MIR   175     TE_peak  LR_close 1.0000000000
5658             Alu    94     TE_peak  LR_close 1.0000000000
5659             MIR    46     TE_peak  LR_close 1.0000000000
5660             MIR   135     TE_peak  LR_close 0.7297297297
5661    TcMar-Tigger   173     TE_peak   LR_open 0.6200716846
5662              L2    83     TE_peak   LR_open 0.5684931507
5663             Alu    31     TE_peak   LR_open 0.2440944882
5664   Simple_repeat    21     TE_peak   LR_open 1.0000000000
5665   Simple_repeat    32     TE_peak   LR_open 1.0000000000
5666             MIR    15     TE_peak   LR_open 0.0595238095
5667             MIR    41     TE_peak  LR_close 0.4939759036
5668             Alu    70     TE_peak  LR_close 0.2153846154
5669             Alu   256     TE_peak   LR_open 0.8561872910
5670     hAT-Charlie   151     TE_peak   LR_open 1.0000000000
5671   Simple_repeat    25     TE_peak   LR_open 1.0000000000
5672             Alu   103     TE_peak   LR_open 0.3652482270
5673             Alu    31     TE_peak   LR_open 0.2384615385
5674             MIR    94     TE_peak   LR_open 1.0000000000
5675     hAT-Charlie    24     TE_peak   LR_open 0.1142857143
5676             MIR    73     TE_peak   not_mrc 1.0000000000
5677              L2   172     TE_peak   not_mrc 1.0000000000
5678             MIR    41     TE_peak   not_mrc 0.2000000000
5679             MIR    23     TE_peak  LR_close 0.0898437500
5680            <NA>    NA not_TE_peak ESR_close           NA
5681              L2    77     TE_peak        NR 1.0000000000
5682     hAT-Charlie    92     TE_peak        NR 0.4946236559
5683              L2    37     TE_peak        NR 0.1737089202
5684             Alu   151     TE_peak   LR_open 0.5279720280
5685              L2   340     TE_peak   LR_open 1.0000000000
5686             Alu   253     TE_peak   LR_open 0.9405204461
5687              L2    90     TE_peak        NR 0.3600000000
5688              L2   167     TE_peak        NR 0.6094890511
5689             Alu    53     TE_peak        NR 0.1766666667
5690   Simple_repeat    59     TE_peak        NR 1.0000000000
5691  Low_complexity    51     TE_peak        NR 1.0000000000
5692             MIR   156     TE_peak        NR 0.7959183673
5693            <NA>    NA not_TE_peak   LR_open           NA
5694             MIR    47     TE_peak        NR 0.2126696833
5695          hAT-Ac    59     TE_peak        NR 1.0000000000
5696             MIR   104     TE_peak        NR 0.4521739130
5697       ERVL-MaLR   424     TE_peak        NR 1.0000000000
5698              L2    65     TE_peak        NR 0.6372549020
5699            <NA>    NA not_TE_peak        NR           NA
5700            <NA>    NA not_TE_peak        NR           NA
5701             Alu    96     TE_peak   LR_open 0.3221476510
5702              L2    14     TE_peak   LR_open 1.0000000000
5703             Alu   289     TE_peak   LR_open 1.0000000000
5704              L2    74     TE_peak   LR_open 1.0000000000
5705             MIR   125     TE_peak   LR_open 1.0000000000
5706             MIR   269     TE_peak        NR 0.9853479853
5707   Simple_repeat    42     TE_peak        NR 1.0000000000
5708            <NA>    NA not_TE_peak        NR           NA
5709   Simple_repeat     5     TE_peak        NR 0.1666666667
5710   Simple_repeat    19     TE_peak    ESR_OC 1.0000000000
5711             MIR    68     TE_peak    ESR_OC 0.2869198312
5712   Simple_repeat     9     TE_peak        NR 0.5294117647
5713             MIR   111     TE_peak  ESR_open 1.0000000000
5714              L2    30     TE_peak  ESR_open 0.5660377358
5715             Alu   201     TE_peak   LR_open 0.7027972028
5716     hAT-Charlie   164     TE_peak   LR_open 1.0000000000
5717             Alu   152     TE_peak EAR_close 0.4935064935
5718            <NA>    NA not_TE_peak        NR           NA
5719             Alu    74     TE_peak        NR 0.2402597403
5720             CR1   144     TE_peak        NR 1.0000000000
5721             CR1    70     TE_peak        NR 0.6086956522
5722              L2   451     TE_peak        NR 1.0000000000
5723              L2    83     TE_peak        NR 0.6287878788
5724            ERV1   689     TE_peak        NR 0.4366286439
5725       ERVL-MaLR   431     TE_peak  LR_close 0.3445243805
5726            <NA>    NA not_TE_peak        NR           NA
5727              L2    61     TE_peak        NR 0.1854103343
5728              L2   236     TE_peak        NR 0.8166089965
5729             Alu   301     TE_peak EAR_close 1.0000000000
5730             Alu   164     TE_peak EAR_close 0.5141065831
5731              L2   374     TE_peak   LR_open 0.9468354430
5732             CR1    67     TE_peak        NR 0.3350000000
5733   Simple_repeat   102     TE_peak        NR 1.0000000000
5734             Alu    30     TE_peak        NR 0.1818181818
5735       ERVL-MaLR   469     TE_peak        NR 0.8086206897
5736              L2    95     TE_peak        NR 0.3064516129
5737             MIR    89     TE_peak  LR_close 0.8165137615
5738             MIR   160     TE_peak        NR 1.0000000000
5739      hAT-Tip100    71     TE_peak        NR 0.3463414634
5740             CR1    46     TE_peak        NR 1.0000000000
5741             MIR   154     TE_peak        NR 1.0000000000
5742             MIR    59     TE_peak        NR 1.0000000000
5743             MIR   117     TE_peak        NR 1.0000000000
5744             MIR    59     TE_peak        NR 1.0000000000
5745              L2     5     TE_peak  LR_close 0.0095419847
5746            ERVL   471     TE_peak  LR_close 0.9812500000
5747   Simple_repeat    30     TE_peak        NR 1.0000000000
5748             MIR    40     TE_peak ESR_close 0.3571428571
5749            <NA>    NA not_TE_peak   LR_open           NA
5750             Alu    89     TE_peak ESR_close 0.3047945205
5751       ERVL-MaLR   187     TE_peak   LR_open 0.9444444444
5752       ERVL-MaLR    86     TE_peak   LR_open 0.5584415584
5753            <NA>    NA not_TE_peak  EAR_open           NA
5754             MIR    68     TE_peak ESR_close 1.0000000000
5755              L2    54     TE_peak        NR 0.2583732057
5756       ERVL-MaLR   283     TE_peak        NR 0.9792387543
5757             MIR    56     TE_peak        NR 0.2533936652
5758            <NA>    NA not_TE_peak ESR_close           NA
5759              L2   105     TE_peak   LR_open 0.6325301205
5760             MIR     4     TE_peak        NR 0.0655737705
5761   Simple_repeat    49     TE_peak        NR 1.0000000000
5762   Simple_repeat    57     TE_peak        NR 1.0000000000
5763   Simple_repeat    46     TE_peak        NR 1.0000000000
5764   Simple_repeat    47     TE_peak        NR 1.0000000000
5765            <NA>    NA not_TE_peak  LR_close           NA
5766   Simple_repeat    22     TE_peak  LR_close 1.0000000000
5767     hAT-Charlie    33     TE_peak        NR 0.3235294118
5768             MIR    85     TE_peak ESR_close 0.7203389831
5769   Simple_repeat    60     TE_peak ESR_close 1.0000000000
5770  Low_complexity    49     TE_peak        NR 1.0000000000
5771            <NA>    NA not_TE_peak ESR_close           NA
5772            ERV1   121     TE_peak   not_mrc 0.9918032787
5773   Simple_repeat    30     TE_peak   not_mrc 1.0000000000
5774              L2   273     TE_peak   not_mrc 1.0000000000
5775             MIR    26     TE_peak   not_mrc 0.1250000000
5776             MIR    27     TE_peak  LR_close 0.1569767442
5777              L2    97     TE_peak        NR 0.2304038005
5778             MIR    40     TE_peak        NR 0.2162162162
5779             MIR   135     TE_peak  LR_close 1.0000000000
5780   Simple_repeat   895     TE_peak   LR_open 0.5460646736
5781            <NA>    NA not_TE_peak  LR_close           NA
5782       ERVL-MaLR    61     TE_peak        NR 0.3210526316
5783       ERVL-MaLR    69     TE_peak        NR 1.0000000000
5784             MIR    91     TE_peak        NR 1.0000000000
5785            <NA>    NA not_TE_peak EAR_close           NA
5786              L2   288     TE_peak  LR_close 0.2086956522
5787              L2   233     TE_peak        NR 0.5810473815
5788             MIR    70     TE_peak        NR 0.2602230483
5789              L2    36     TE_peak   LR_open 0.5070422535
5790   Simple_repeat    22     TE_peak   LR_open 1.0000000000
5791   Simple_repeat    20     TE_peak        NR 1.0000000000
5792             MIR   157     TE_peak        NR 1.0000000000
5793             MIR    77     TE_peak        NR 1.0000000000
5794            <NA>    NA not_TE_peak   LR_open           NA
5795             MIR   270     TE_peak        NR 1.0000000000
5796             MIR     1     TE_peak   LR_open 0.0105263158
5797             MIR   158     TE_peak        NR 1.0000000000
5798       ERVL-MaLR   205     TE_peak EAR_close 0.6269113150
5799              L2   191     TE_peak ESR_close 1.0000000000
5800              L2     8     TE_peak ESR_close 0.0184331797
5801   Simple_repeat    42     TE_peak ESR_close 1.0000000000
5802   Simple_repeat   314     TE_peak  ESR_open 0.0948353972
5803             CR1    32     TE_peak   LR_open 0.4324324324
5804     hAT-Charlie    87     TE_peak   LR_open 0.4531250000
5805              L2   185     TE_peak        NR 1.0000000000
5806   Simple_repeat    35     TE_peak  LR_close 1.0000000000
5807            <NA>    NA not_TE_peak ESR_close           NA
5808            <NA>    NA not_TE_peak        NR           NA
5809       ERVL-MaLR   120     TE_peak  LR_close 0.8759124088
5810       ERVL-MaLR   159     TE_peak  LR_close 1.0000000000
5811              L1   303     TE_peak  LR_close 1.0000000000
5812              L1   147     TE_peak  LR_close 0.6099585062
5813            <NA>    NA not_TE_peak   LR_open           NA
5814     hAT-Charlie   180     TE_peak   LR_open 1.0000000000
5815              L2   139     TE_peak   LR_open 0.8853503185
5816            <NA>    NA not_TE_peak ESR_close           NA
5817              L2    30     TE_peak        NR 0.2142857143
5818              L2   120     TE_peak        NR 1.0000000000
5819             MIR    96     TE_peak        NR 0.4465116279
5820             CR1    65     TE_peak        NR 0.1737967914
5821             MIR    72     TE_peak        NR 0.6260869565
5822   Simple_repeat    57     TE_peak        NR 1.0000000000
5823            <NA>    NA not_TE_peak  EAR_open           NA
5824              L2   193     TE_peak  LR_close 0.5346260388
5825              L2   402     TE_peak   LR_open 1.0000000000
5826              L2    86     TE_peak   LR_open 1.0000000000
5827             MIR   169     TE_peak   LR_open 1.0000000000
5828            <NA>    NA not_TE_peak        NR           NA
5829             Alu    20     TE_peak        NR 0.0803212851
5830              L2    74     TE_peak ESR_close 0.3834196891
5831             CR1    87     TE_peak        NR 1.0000000000
5832             MIR    12     TE_peak        NR 0.0759493671
5833            <NA>    NA not_TE_peak ESR_close           NA
5834            <NA>    NA not_TE_peak        NR           NA
5835             MIR    60     TE_peak   not_mrc 0.3314917127
5836   Simple_repeat    20     TE_peak   not_mrc 1.0000000000
5837   Simple_repeat    50     TE_peak        NR 1.0000000000
5838   Simple_repeat   553     TE_peak        NR 0.9910394265
5839            ERV1   135     TE_peak ESR_close 0.1319648094
5840             MIR    35     TE_peak  LR_close 0.1682692308
5841             CR1    69     TE_peak  LR_close 0.8414634146
5842             MIR   211     TE_peak  LR_close 0.8902953586
5843             MIR    21     TE_peak  LR_close 0.1468531469
5844   Simple_repeat    21     TE_peak   LR_open 0.8400000000
5845            <NA>    NA not_TE_peak  EAR_open           NA
5846             Alu   162     TE_peak        NR 1.0000000000
5847             CR1    80     TE_peak        NR 1.0000000000
5848       ERVL-MaLR    43     TE_peak EAR_close 0.1137566138
5849             MIR   176     TE_peak EAR_close 1.0000000000
5850            <NA>    NA not_TE_peak        NR           NA
5851            <NA>    NA not_TE_peak  LR_close           NA
5852             MIR    20     TE_peak   LR_open 0.1069518717
5853            <NA>    NA not_TE_peak   LR_open           NA
5854              L2   366     TE_peak   LR_open 1.0000000000
5855              L2   498     TE_peak        NR 0.7545454545
5856             MIR   129     TE_peak  EAR_open 1.0000000000
5857             Alu    67     TE_peak  LR_close 0.2318339100
5858            <NA>    NA not_TE_peak  LR_close           NA
5859   Simple_repeat   485     TE_peak        NR 0.8248299320
5860             MIR    55     TE_peak  LR_close 0.4508196721
5861      hAT-Tip100    40     TE_peak        NR 0.2631578947
5862              L2   130     TE_peak        NR 1.0000000000
5863              L2   336     TE_peak        NR 0.4462151394
5864              L2     8     TE_peak   LR_open 0.0106241700
5865              L2   231     TE_peak   LR_open 1.0000000000
5866            ERVL   294     TE_peak   LR_open 0.6255319149
5867   Simple_repeat    30     TE_peak        NR 1.0000000000
5868   Simple_repeat    26     TE_peak        NR 1.0000000000
5869            <NA>    NA not_TE_peak ESR_close           NA
5870             CR1   145     TE_peak   LR_open 0.7591623037
5871             MIR   239     TE_peak   LR_open 1.0000000000
5872            <NA>    NA not_TE_peak        NR           NA
5873            <NA>    NA not_TE_peak        NR           NA
5874              L2   246     TE_peak        NR 0.2194469224
5875   Simple_repeat    30     TE_peak        NR 0.4225352113
5876   Simple_repeat    38     TE_peak        NR 1.0000000000
5877            <NA>    NA not_TE_peak EAR_close           NA
5878             MIR    84     TE_peak        NR 1.0000000000
5879             MIR   153     TE_peak        NR 0.6652173913
5880       ERVL-MaLR   124     TE_peak        NR 1.0000000000
5881   Simple_repeat   442     TE_peak   LR_open 1.0000000000
5882   Simple_repeat    36     TE_peak        NR 1.0000000000
5883             MIR    42     TE_peak        NR 0.1757322176
5884   Simple_repeat    45     TE_peak        NR 1.0000000000
5885   Simple_repeat    30     TE_peak        NR 1.0000000000
5886  Low_complexity    19     TE_peak  ESR_open 0.2638888889
5887   Simple_repeat    41     TE_peak  ESR_open 1.0000000000
5888   Simple_repeat    28     TE_peak  ESR_open 1.0000000000
5889             MIR    67     TE_peak        NR 0.3087557604
5890             MIR    25     TE_peak        NR 0.0919117647
5891   Simple_repeat    58     TE_peak   LR_open 1.0000000000
5892             Alu   173     TE_peak        NR 0.5824915825
5893            <NA>    NA not_TE_peak        NR           NA
5894            <NA>    NA not_TE_peak        NR           NA
5895              L1   267     TE_peak        NR 0.3418693982
5896              L1   425     TE_peak        NR 0.1597143931
5897              L2    87     TE_peak   LR_open 0.6692307692
5898   hAT-Blackjack    90     TE_peak   LR_open 1.0000000000
5899              L2    91     TE_peak   LR_open 1.0000000000
5900              L2   111     TE_peak   LR_open 1.0000000000
5901             Alu   291     TE_peak        NR 1.0000000000
5902              L2    38     TE_peak        NR 0.1439393939
5903              L1   377     TE_peak  LR_close 0.1105896157
5904             CR1   138     TE_peak        NR 0.3965517241
5905              L2   243     TE_peak        NR 1.0000000000
5906             Alu   247     TE_peak        NR 0.8288590604
5907             Alu   254     TE_peak   LR_open 0.8610169492
5908             MIR    65     TE_peak   LR_open 0.4642857143
5909            <NA>    NA not_TE_peak        NR           NA
5910    TcMar-Tigger   509     TE_peak  EAR_open 0.9024822695
5911   Simple_repeat    57     TE_peak        NR 1.0000000000
5912   Simple_repeat    65     TE_peak        NR 1.0000000000
5913              L2    72     TE_peak  LR_close 1.0000000000
5914             MIR    42     TE_peak  LR_close 1.0000000000
5915             Alu    39     TE_peak  LR_close 0.1270358306
5916   Simple_repeat    50     TE_peak        NR 1.0000000000
5917            <NA>    NA not_TE_peak ESR_close           NA
5918             MIR   107     TE_peak  LR_close 0.8230769231
5919             MIR   126     TE_peak   LR_open 1.0000000000
5920            <NA>    NA not_TE_peak        NR           NA
5921              L1   114     TE_peak   LR_open 1.0000000000
5922   Simple_repeat    33     TE_peak   LR_open 1.0000000000
5923              L1    91     TE_peak   LR_open 0.3684210526
5924   Simple_repeat    51     TE_peak  EAR_open 1.0000000000
5925             MIR    11     TE_peak        NR 0.0733333333
5926            ERVL   201     TE_peak EAR_close 0.4085365854
5927            <NA>    NA not_TE_peak        NR           NA
5928    TcMar-Tigger   374     TE_peak   LR_open 0.6459412781
5929            ERV1   312     TE_peak  LR_close 0.8524590164
5930             MIR   127     TE_peak  LR_close 1.0000000000
5931              L2   100     TE_peak        NR 0.9259259259
5932            <NA>    NA not_TE_peak        NR           NA
5933             MIR    42     TE_peak        NR 0.5384615385
5934   Simple_repeat    47     TE_peak        NR 1.0000000000
5935    TcMar-Tigger   282     TE_peak        NR 0.7212276215
5936              L1   266     TE_peak        NR 0.8036253776
5937            <NA>    NA not_TE_peak        NR           NA
5938            <NA>    NA not_TE_peak ESR_close           NA
5939            <NA>    NA not_TE_peak        NR           NA
5940            <NA>    NA not_TE_peak        NR           NA
5941              L2    20     TE_peak        NR 0.2469135802
5942             MIR   212     TE_peak        NR 0.9137931034
5943              L1    85     TE_peak        NR 1.0000000000
5944             MIR    62     TE_peak        NR 1.0000000000
5945       ERVL-MaLR   109     TE_peak        NR 0.3168604651
5946              L2    87     TE_peak        NR 1.0000000000
5947             MIR    57     TE_peak        NR 0.5700000000
5948             MIR   209     TE_peak        NR 1.0000000000
5949  Low_complexity    46     TE_peak        NR 1.0000000000
5950   Simple_repeat     9     TE_peak        NR 1.0000000000
5951             MIR    71     TE_peak        NR 0.6228070175
5952            <NA>    NA not_TE_peak        NR           NA
5953            <NA>    NA not_TE_peak        NR           NA
5954              L1   235     TE_peak ESR_close 0.0930693069
5955              L1   128     TE_peak ESR_close 0.4830188679
5956            <NA>    NA not_TE_peak  ESR_open           NA
5957   Simple_repeat    13     TE_peak  LR_close 0.2063492063
5958   Simple_repeat    83     TE_peak  LR_close 1.0000000000
5959   Simple_repeat    48     TE_peak  LR_close 1.0000000000
5960              L1   257     TE_peak        NR 0.5526881720
5961              L1   191     TE_peak        NR 0.5858895706
5962              L2   115     TE_peak        NR 0.3042328042
5963   Simple_repeat    38     TE_peak        NR 1.0000000000
5964   Simple_repeat    34     TE_peak        NR 1.0000000000
5965             MIR    44     TE_peak ESR_close 0.7719298246
5966             MIR     7     TE_peak        NR 0.0583333333
5967            <NA>    NA not_TE_peak        NR           NA
5968            <NA>    NA not_TE_peak   LR_open           NA
5969             Alu    16     TE_peak        NR 0.1403508772
5970   Simple_repeat    24     TE_peak        NR 1.0000000000
5971              L2   123     TE_peak        NR 0.8424657534
5972             MIR    67     TE_peak    ESR_OC 1.0000000000
5973     hAT-Charlie   101     TE_peak    ESR_OC 1.0000000000
5974            <NA>    NA not_TE_peak ESR_close           NA
5975            <NA>    NA not_TE_peak        NR           NA
5976   Simple_repeat    32     TE_peak        NR 1.0000000000
5977             MIR    78     TE_peak        NR 1.0000000000
5978             MIR   104     TE_peak        NR 1.0000000000
5979   Simple_repeat    37     TE_peak ESR_close 1.0000000000
5980             MIR   159     TE_peak   LR_open 0.7361111111
5981             MIR   123     TE_peak   LR_open 0.6684782609
5982       ERVL-MaLR   137     TE_peak   LR_open 0.4945848375
5983              L1    50     TE_peak        NR 0.1612903226
5984            ERV1     9     TE_peak        NR 0.1428571429
5985              L1   525     TE_peak        NR 0.7123473541
5986            <NA>    NA not_TE_peak        NR           NA
5987             MIR    59     TE_peak        NR 1.0000000000
5988              L1    21     TE_peak        NR 0.1500000000
5989            ERVL   507     TE_peak ESR_close 0.4145543745
5990            <NA>    NA not_TE_peak   LR_open           NA
5991   Simple_repeat    65     TE_peak  EAR_open 0.9558823529
5992             CR1   470     TE_peak  EAR_open 1.0000000000
5993             LTR    96     TE_peak  EAR_open 0.4016736402
5994            <NA>    NA not_TE_peak        NR           NA
5995              L2   114     TE_peak        NR 1.0000000000
5996              L2   163     TE_peak        NR 1.0000000000
5997   Simple_repeat    32     TE_peak        NR 1.0000000000
5998   Simple_repeat    30     TE_peak  LR_close 1.0000000000
5999             MIR   121     TE_peak        NR 0.5170940171
6000              L1    32     TE_peak        NR 0.2622950820
6001              L1   512     TE_peak        NR 0.0854900651
6002              L1     7     TE_peak        NR 0.0099290780
6003       ERVL-MaLR    87     TE_peak ESR_close 1.0000000000
6004             MIR   190     TE_peak ESR_close 0.7421875000
6005            <NA>    NA not_TE_peak ESR_close           NA
6006             MIR   216     TE_peak  ESR_open 1.0000000000
6007             MIR    24     TE_peak  ESR_open 0.2926829268
6008            <NA>    NA not_TE_peak        NR           NA
6009    TcMar-Tigger   197     TE_peak        NR 0.6746575342
6010              L2   119     TE_peak        NR 0.8814814815
6011            <NA>    NA not_TE_peak EAR_close           NA
6012             MIR   162     TE_peak        NR 1.0000000000
6013             Alu    96     TE_peak        NR 0.3287671233
6014            <NA>    NA not_TE_peak        NR           NA
6015     hAT-Charlie   139     TE_peak   LR_open 1.0000000000
6016              L2    35     TE_peak   LR_open 0.0797266515
6017   Simple_repeat    55     TE_peak        NR 0.2340425532
6018             MIR    75     TE_peak   LR_open 1.0000000000
6019              L2    39     TE_peak   LR_open 0.5200000000
6020            ERVL   101     TE_peak  LR_close 1.0000000000
6021             Alu    53     TE_peak        NR 0.1720779221
6022             Alu   147     TE_peak   LR_open 0.8855421687
6023             MIR   230     TE_peak  LR_close 1.0000000000
6024              L2    91     TE_peak  LR_close 1.0000000000
6025              L2   225     TE_peak  LR_close 0.5936675462
6026            <NA>    NA not_TE_peak        NR           NA
6027              L2   323     TE_peak ESR_close 0.7494199536
6028              L2   305     TE_peak ESR_close 0.5407801418
6029              L2   270     TE_peak ESR_close 0.3268765133
6030              L2   158     TE_peak        NR 0.2548387097
6031  Low_complexity    68     TE_peak        NR 1.0000000000
6032              L2   299     TE_peak        NR 0.5761078998
6033             MIR    88     TE_peak  LR_close 1.0000000000
6034   Simple_repeat    42     TE_peak  LR_close 1.0000000000
6035   Simple_repeat    49     TE_peak  LR_close 1.0000000000
6036            <NA>    NA not_TE_peak   LR_open           NA
6037            <NA>    NA not_TE_peak  EAR_open           NA
6038             Alu    51     TE_peak    ESR_OC 0.1639871383
6039              L2   195     TE_peak    ESR_OC 0.7768924303
6040             Alu    81     TE_peak        NR 0.5000000000
6041            <NA>    NA not_TE_peak   LR_open           NA
6042            <NA>    NA not_TE_peak        NR           NA
6043            <NA>    NA not_TE_peak ESR_close           NA
6044             MIR   116     TE_peak  EAR_open 1.0000000000
6045              L2   168     TE_peak        NR 1.0000000000
6046   Simple_repeat    66     TE_peak        NR 1.0000000000
6047   Simple_repeat    39     TE_peak        NR 1.0000000000
6048              L1    94     TE_peak        NR 1.0000000000
6049       ERVL-MaLR    62     TE_peak        NR 0.5486725664
6050            ERVL   423     TE_peak        NR 0.6724960254
6051            ERVL   277     TE_peak        NR 1.0000000000
6052            ERVL   110     TE_peak        NR 1.0000000000
6053              L1    72     TE_peak        NR 0.3103448276
6054            ERVL    67     TE_peak  EAR_open 0.6568627451
6055            ERVL   267     TE_peak  EAR_open 1.0000000000
6056              L1   202     TE_peak  EAR_open 0.5611111111
6057              L2   276     TE_peak   LR_open 0.2541436464
6058              L2   455     TE_peak  LR_close 0.5759493671
6059              L2   122     TE_peak   LR_open 1.0000000000
6060             Alu    68     TE_peak   LR_open 0.5312500000
6061            <NA>    NA not_TE_peak        NR           NA
6062  Low_complexity    55     TE_peak        NR 1.0000000000
6063   Simple_repeat    66     TE_peak        NR 1.0000000000
6064   Simple_repeat    42     TE_peak        NR 1.0000000000
6065   Simple_repeat    49     TE_peak        NR 1.0000000000
6066   Simple_repeat    41     TE_peak        NR 1.0000000000
6067            <NA>    NA not_TE_peak  LR_close           NA
6068   Simple_repeat    39     TE_peak EAR_close 1.0000000000
6069              L2    77     TE_peak EAR_close 0.1910669975
6070              L2   132     TE_peak ESR_close 1.0000000000
6071             MIR   115     TE_peak ESR_close 0.5180180180
6072            <NA>    NA not_TE_peak        NR           NA
6073   Simple_repeat    39     TE_peak ESR_close 1.0000000000
6074   Simple_repeat    20     TE_peak   not_mrc 1.0000000000
6075   Simple_repeat    41     TE_peak   not_mrc 1.0000000000
6076            <NA>    NA not_TE_peak ESR_close           NA
6077            <NA>    NA not_TE_peak        NR           NA
6078             MIR    73     TE_peak        NR 1.0000000000
6079   Simple_repeat    59     TE_peak ESR_close 1.0000000000
6080   Simple_repeat    37     TE_peak ESR_close 1.0000000000
6081            <NA>    NA not_TE_peak  ESR_open           NA
6082            <NA>    NA not_TE_peak   LR_open           NA
6083              L2    96     TE_peak        NR 0.6808510638
6084             Alu     4     TE_peak        NR 0.0129032258
6085   hAT-Blackjack    99     TE_peak        NR 1.0000000000
6086             MIR    89     TE_peak        NR 0.3991031390
6087             MIR    15     TE_peak        NR 0.0700934579
6088   Simple_repeat    48     TE_peak        NR 1.0000000000
6089              L2   186     TE_peak        NR 0.7440000000
6090             Alu   131     TE_peak   LR_open 0.4440677966
6091            <NA>    NA not_TE_peak ESR_close           NA
6092            <NA>    NA not_TE_peak   LR_open           NA
6093   Simple_repeat    80     TE_peak        NR 1.0000000000
6094   Simple_repeat    33     TE_peak        NR 1.0000000000
6095  Low_complexity    77     TE_peak        NR 1.0000000000
6096    TcMar-Tigger   131     TE_peak        NR 0.3171912833
6097             Alu   142     TE_peak  LR_close 0.5182481752
6098             Alu   278     TE_peak  LR_close 1.0000000000
6099              L1   148     TE_peak  LR_close 1.0000000000
6100       ERVL-MaLR    11     TE_peak  LR_close 0.0303867403
6101              L1    34     TE_peak  LR_close 0.2023809524
6102   Simple_repeat    22     TE_peak  LR_close 1.0000000000
6103              L1   151     TE_peak        NR 0.5101351351
6104       ERVL-MaLR   154     TE_peak        NR 0.7230046948
6105             MIR    87     TE_peak        NR 1.0000000000
6106             MIR    16     TE_peak        NR 0.2807017544
6107            ERVL   226     TE_peak ESR_close 0.4870689655
6108   Simple_repeat    25     TE_peak        NR 1.0000000000
6109              L2   274     TE_peak        NR 1.0000000000
6110              L2    40     TE_peak   LR_open 0.3149606299
6111              L1   465     TE_peak        NR 0.6690647482
6112            ERVL    75     TE_peak        NR 0.2459016393
6113             CR1   245     TE_peak   LR_open 1.0000000000
6114            <NA>    NA not_TE_peak        NR           NA
6115            <NA>    NA not_TE_peak        NR           NA
6116    TcMar-Tigger    74     TE_peak        NR 1.0000000000
6117    TcMar-Tigger    64     TE_peak        NR 1.0000000000
6118              L1   840     TE_peak        NR 0.6942148760
6119              L2   234     TE_peak   LR_open 0.7959183673
6120            <NA>    NA not_TE_peak   LR_open           NA
6121              L2    41     TE_peak ESR_close 0.6212121212
6122             MIR   118     TE_peak ESR_close 1.0000000000
6123              L2   257     TE_peak ESR_close 0.8398692810
6124            <NA>    NA not_TE_peak  LR_close           NA
6125            <NA>    NA not_TE_peak        NR           NA
6126              L2   162     TE_peak  LR_close 1.0000000000
6127            <NA>    NA not_TE_peak        NR           NA
6128              L2   358     TE_peak        NR 0.3934065934
6129              L2    61     TE_peak   not_mrc 0.1358574610
6130             MIR   118     TE_peak   not_mrc 1.0000000000
6131              L2    53     TE_peak   not_mrc 0.5888888889
6132              L2    44     TE_peak  LR_close 0.6666666667
6133            <NA>    NA not_TE_peak   not_mrc           NA
6134            <NA>    NA not_TE_peak        NR           NA
6135              L2    92     TE_peak   LR_open 0.5679012346
6136             Alu    88     TE_peak   LR_open 0.2913907285
6137            <NA>    NA not_TE_peak        NR           NA
6138            <NA>    NA not_TE_peak        NR           NA
6139   Simple_repeat    38     TE_peak        NR 1.0000000000
6140             Alu    34     TE_peak        NR 0.1192982456
6141              L2   128     TE_peak        NR 0.2361623616
6142   Simple_repeat    44     TE_peak        NR 1.0000000000
6143   Simple_repeat    38     TE_peak        NR 1.0000000000
6144            <NA>    NA not_TE_peak        NR           NA
6145   Simple_repeat    43     TE_peak        NR 1.0000000000
6146            <NA>    NA not_TE_peak        NR           NA
6147            <NA>    NA not_TE_peak EAR_close           NA
6148             MIR    56     TE_peak        NR 1.0000000000
6149              L2    32     TE_peak        NR 1.0000000000
6150              L2   137     TE_peak        NR 0.4521452145
6151   Simple_repeat    57     TE_peak        NR 1.0000000000
6152   Simple_repeat    37     TE_peak        NR 1.0000000000
6153   Simple_repeat    33     TE_peak        NR 1.0000000000
6154            <NA>    NA not_TE_peak        NR           NA
6155             MIR   154     TE_peak        NR 0.6637931034
6156             MIR   183     TE_peak        NR 1.0000000000
6157     hAT-Charlie    97     TE_peak   LR_open 0.6100628931
6158   Simple_repeat    48     TE_peak   LR_open 1.0000000000
6159              L1   170     TE_peak        NR 0.4521276596
6160             Alu    55     TE_peak  LR_close 0.1903114187
6161            ERV1   223     TE_peak  LR_close 1.0000000000
6162   Simple_repeat    17     TE_peak  LR_close 0.4722222222
6163              L2   308     TE_peak   LR_open 0.7877237852
6164             Alu   117     TE_peak   LR_open 1.0000000000
6165   Simple_repeat    29     TE_peak   LR_open 1.0000000000
6166             Alu    14     TE_peak   LR_open 0.0823529412
6167       ERVL-MaLR   403     TE_peak   LR_open 0.6936316695
6168              L2   139     TE_peak   LR_open 0.4498381877
6169             Alu    49     TE_peak   LR_open 0.1540880503
6170              L2   386     TE_peak  LR_close 0.5813253012
6171            ERVL   308     TE_peak        NR 0.7567567568
6172     hAT-Charlie   128     TE_peak        NR 1.0000000000
6173             Alu   111     TE_peak        NR 0.4252873563
6174            <NA>    NA not_TE_peak        NR           NA
6175              L1   324     TE_peak  LR_close 0.1443850267
6176             MIR   121     TE_peak        NR 0.9097744361
6177            <NA>    NA not_TE_peak        NR           NA
6178            <NA>    NA not_TE_peak ESR_close           NA
6179   Simple_repeat    38     TE_peak        NR 1.0000000000
6180             MIR   224     TE_peak        NR 1.0000000000
6181            <NA>    NA not_TE_peak ESR_close           NA
6182             MIR    70     TE_peak        NR 1.0000000000
6183       ERVL-MaLR   416     TE_peak  LR_close 1.0000000000
6184            <NA>    NA not_TE_peak ESR_close           NA
6185            <NA>    NA not_TE_peak        NR           NA
6186            <NA>    NA not_TE_peak  LR_close           NA
6187            <NA>    NA not_TE_peak   LR_open           NA
6188            <NA>    NA not_TE_peak  LR_close           NA
6189            <NA>    NA not_TE_peak   LR_open           NA
6190            <NA>    NA not_TE_peak        NR           NA
6191             MIR    30     TE_peak        NR 0.2380952381
6192             MIR    24     TE_peak   LR_open 0.0956175299
6193             MIR   108     TE_peak   LR_open 1.0000000000
6194     hAT-Charlie   153     TE_peak   LR_open 1.0000000000
6195     hAT-Charlie    15     TE_peak   LR_open 0.2884615385
6196            <NA>    NA not_TE_peak        NR           NA
6197   Simple_repeat    40     TE_peak  LR_close 1.0000000000
6198             Alu     9     TE_peak        NR 0.0292207792
6199              L2   328     TE_peak        NR 0.9010989011
6200   Simple_repeat    25     TE_peak        NR 1.0000000000
6201             MIR   226     TE_peak        NR 1.0000000000
6202            <NA>    NA not_TE_peak   LR_open           NA
6203              L2   341     TE_peak   not_mrc 0.4736111111
6204           snRNA    98     TE_peak   not_mrc 1.0000000000
6205             Alu    52     TE_peak   not_mrc 0.1672025723
6206   Simple_repeat    61     TE_peak        NR 1.0000000000
6207   Simple_repeat    73     TE_peak        NR 1.0000000000
6208   Simple_repeat    31     TE_peak        NR 1.0000000000
6209  Low_complexity    50     TE_peak        NR 1.0000000000
6210            <NA>    NA not_TE_peak        NR           NA
6211   Simple_repeat    30     TE_peak        NR 1.0000000000
6212  Low_complexity    54     TE_peak        NR 1.0000000000
6213              L2    47     TE_peak        NR 0.7704918033
6214       ERVL-MaLR   237     TE_peak EAR_close 1.0000000000
6215     hAT-Charlie    34     TE_peak EAR_close 0.2344827586
6216            <NA>    NA not_TE_peak        NR           NA
6217            <NA>    NA not_TE_peak        NR           NA
6218              L2    28     TE_peak ESR_close 0.0456026059
6219   Simple_repeat    48     TE_peak        NR 1.0000000000
6220   Simple_repeat    23     TE_peak        NR 1.0000000000
6221   Simple_repeat    52     TE_peak        NR 1.0000000000
6222   Simple_repeat    64     TE_peak        NR 1.0000000000
6223   Simple_repeat    42     TE_peak        NR 1.0000000000
6224              L2    74     TE_peak        NR 1.0000000000
6225              L2   232     TE_peak        NR 0.1354349095
6226              L2   345     TE_peak        NR 0.2014010508
6227             CR1   467     TE_peak   LR_open 0.6642958748
6228             MIR   229     TE_peak   LR_open 1.0000000000
6229             MIR    81     TE_peak   LR_open 1.0000000000
6230             Alu     3     TE_peak        NR 0.0097402597
6231              L2   327     TE_peak        NR 0.6553106212
6232            ERVL   329     TE_peak        NR 0.9293785311
6233             CR1    38     TE_peak        NR 0.2500000000
6234             CR1    18     TE_peak        NR 0.1034482759
6235              L2   112     TE_peak   LR_open 0.5463414634
6236              L2    89     TE_peak   LR_open 0.4734042553
6237              L2    50     TE_peak   LR_open 0.1010101010
6238              L2   122     TE_peak   LR_open 1.0000000000
6239              L2   157     TE_peak   LR_open 1.0000000000
6240     hAT-Charlie   141     TE_peak  LR_close 0.8650306748
6241             MIR    95     TE_peak        NR 1.0000000000
6242   Simple_repeat    33     TE_peak        NR 1.0000000000
6243   Simple_repeat    40     TE_peak        NR 1.0000000000
6244             MIR    46     TE_peak        NR 1.0000000000
6245              L2   199     TE_peak        NR 0.8223140496
6246   Simple_repeat    57     TE_peak        NR 1.0000000000
6247            <NA>    NA not_TE_peak        NR           NA
6248            <NA>    NA not_TE_peak  LR_close           NA
6249              L2    47     TE_peak        NR 1.0000000000
6250            <NA>    NA not_TE_peak        NR           NA
6251            <NA>    NA not_TE_peak  LR_close           NA
6252             MIR    58     TE_peak        NR 0.2885572139
6253   Simple_repeat    29     TE_peak   LR_open 1.0000000000
6254              L2   139     TE_peak   LR_open 1.0000000000
6255             Alu   126     TE_peak   LR_open 0.4390243902
6256             Alu   322     TE_peak        NR 0.8563829787
6257             MIR   111     TE_peak        NR 0.8161764706
6258             Alu   161     TE_peak        NR 0.5278688525
6259             Alu    88     TE_peak ESR_close 1.0000000000
6260           snRNA   114     TE_peak ESR_close 1.0000000000
6261             Alu    58     TE_peak ESR_close 0.4461538462
6262   Simple_repeat    45     TE_peak   not_mrc 1.0000000000
6263              L2    26     TE_peak        NR 0.0962962963
6264             Alu   141     TE_peak   not_mrc 1.0000000000
6265             Alu   191     TE_peak   not_mrc 1.0000000000
6266           snRNA   116     TE_peak   not_mrc 1.0000000000
6267             Alu    88     TE_peak   not_mrc 0.2972972973
6268             Alu    61     TE_peak        NR 0.4552238806
6269             MIR    94     TE_peak        NR 1.0000000000
6270              L2   327     TE_peak        NR 0.7381489842
6271  Low_complexity    55     TE_peak        NR 1.0000000000
6272             Alu   126     TE_peak        NR 1.0000000000
6273   Simple_repeat    39     TE_peak        NR 1.0000000000
6274            <NA>    NA not_TE_peak   not_mrc           NA
6275              L2   376     TE_peak EAR_close 1.0000000000
6276             Alu   163     TE_peak EAR_close 0.5361842105
6277             Alu    48     TE_peak  ESR_open 0.1696113074
6278             Alu   150     TE_peak  ESR_open 1.0000000000
6279             Alu    19     TE_peak  ESR_open 0.0570570571
6280   Simple_repeat    56     TE_peak        NR 1.0000000000
6281   Simple_repeat    24     TE_peak        NR 1.0000000000
6282             Alu    68     TE_peak        NR 0.2222222222
6283            <NA>    NA not_TE_peak   LR_open           NA
6284            <NA>    NA not_TE_peak  ESR_open           NA
6285            <NA>    NA not_TE_peak EAR_close           NA
6286   Simple_repeat    27     TE_peak   not_mrc 1.0000000000
6287              L2   198     TE_peak        NR 0.4551724138
6288             Alu    48     TE_peak        NR 0.1696113074
6289   Simple_repeat    52     TE_peak        NR 1.0000000000
6290  Low_complexity    31     TE_peak        NR 1.0000000000
6291             Alu    46     TE_peak   LR_open 0.4181818182
6292             Alu   162     TE_peak   LR_open 1.0000000000
6293           snRNA    95     TE_peak   LR_open 1.0000000000
6294              L2   222     TE_peak   LR_open 1.0000000000
6295             MIR   123     TE_peak   LR_open 1.0000000000
6296   Simple_repeat    28     TE_peak   LR_open 1.0000000000
6297  Low_complexity    36     TE_peak   LR_open 1.0000000000
6298            <NA>    NA not_TE_peak        NR           NA
6299       ERVL-MaLR   259     TE_peak        NR 1.0000000000
6300             Alu    11     TE_peak        NR 0.1157894737
6301             Alu    13     TE_peak        NR 0.0430463576
6302             Alu   146     TE_peak        NR 0.5000000000
6303             MIR     5     TE_peak   LR_open 0.0450450450
6304   Simple_repeat    48     TE_peak   LR_open 1.0000000000
6305             Alu    51     TE_peak   LR_open 0.4146341463
6306             SVA   329     TE_peak        NR 0.2250341997
6307             Alu   143     TE_peak        NR 0.4750830565
6308             MIR    88     TE_peak        NR 1.0000000000
6309              L2   113     TE_peak        NR 1.0000000000
6310             Alu    29     TE_peak   LR_open 0.0983050847
6311              L1   341     TE_peak   LR_open 1.0000000000
6312              L1   296     TE_peak   LR_open 0.4933333333
6313            <NA>    NA not_TE_peak  EAR_open           NA
6314             Alu   154     TE_peak        NR 1.0000000000
6315              L2   109     TE_peak        NR 1.0000000000
6316              L2    22     TE_peak        NR 0.2115384615
6317            <NA>    NA not_TE_peak        NR           NA
6318            <NA>    NA not_TE_peak        NR           NA
6319            <NA>    NA not_TE_peak        NR           NA
6320              L2   106     TE_peak   LR_open 1.0000000000
6321             Alu    36     TE_peak        NR 0.1180327869
6322            ERVL   180     TE_peak        NR 1.0000000000
6323            ERVL    38     TE_peak        NR 0.2900763359
6324   Simple_repeat    50     TE_peak        NR 1.0000000000
6325            ERVL   504     TE_peak   LR_open 1.0000000000
6326            <NA>    NA not_TE_peak        NR           NA
6327             Alu   211     TE_peak        NR 0.7201365188
6328   Simple_repeat    39     TE_peak        NR 1.0000000000
6329   Simple_repeat    11     TE_peak        NR 0.3437500000
6330              L2   126     TE_peak        NR 1.0000000000
6331              L2   118     TE_peak        NR 1.0000000000
6332             Alu   260     TE_peak  ESR_open 0.8934707904
6333              L2   138     TE_peak   LR_open 1.0000000000
6334              L2    32     TE_peak   LR_open 0.3440860215
6335             Alu   244     TE_peak        NR 0.8000000000
6336             Alu    46     TE_peak        NR 0.1543624161
6337       ERVL-MaLR   346     TE_peak  ESR_open 0.7193347193
6338             Alu   281     TE_peak   LR_open 1.0000000000
6339     hAT-Charlie   114     TE_peak   LR_open 0.9047619048
6340            <NA>    NA not_TE_peak        NR           NA
6341            <NA>    NA not_TE_peak  LR_close           NA
6342            <NA>    NA not_TE_peak        NR           NA
6343             Alu   135     TE_peak        NR 0.8035714286
6344            ERVK   448     TE_peak        NR 0.4691099476
6345             Alu    35     TE_peak        NR 0.2777777778
6346            <NA>    NA not_TE_peak        NR           NA
6347             Alu   102     TE_peak        NR 0.4415584416
6348              L2    50     TE_peak        NR 1.0000000000
6349             MIR     8     TE_peak        NR 0.1012658228
6350             MIR    81     TE_peak        NR 1.0000000000
6351             MIR   195     TE_peak        NR 0.9112149533
6352             Alu    57     TE_peak   not_mrc 0.1881188119
6353            <NA>    NA not_TE_peak ESR_close           NA
6354            <NA>    NA not_TE_peak        NR           NA
6355            ERV1   472     TE_peak        NR 0.3264177040
6356            <NA>    NA not_TE_peak        NR           NA
6357     hAT-Charlie    46     TE_peak   LR_open 0.5054945055
6358             Alu   171     TE_peak   LR_open 1.0000000000
6359            <NA>    NA not_TE_peak   LR_open           NA
6360            <NA>    NA not_TE_peak   not_mrc           NA
6361             Alu    52     TE_peak        NR 0.5000000000
6362              L1   142     TE_peak        NR 1.0000000000
6363            ERVL   483     TE_peak        NR 1.0000000000
6364             Alu    42     TE_peak        NR 0.1453287197
6365             Alu   127     TE_peak   LR_open 0.8698630137
6366             Alu   309     TE_peak   LR_open 1.0000000000
6367             Alu   115     TE_peak   LR_open 0.7142857143
6368              L1   192     TE_peak  ESR_open 1.0000000000
6369     hAT-Charlie    49     TE_peak  ESR_open 1.0000000000
6370       ERVL-MaLR   153     TE_peak  ESR_open 0.9503105590
6371             MIR    46     TE_peak        NR 1.0000000000
6372            <NA>    NA not_TE_peak        NR           NA
6373            ERVL   320     TE_peak        NR 0.5643738977
6374             Alu   193     TE_peak ESR_close 0.6205787781
6375              L1    20     TE_peak        NR 0.1020408163
6376             Alu   301     TE_peak        NR 1.0000000000
6377              L1   123     TE_peak        NR 1.0000000000
6378             Alu    90     TE_peak        NR 0.2884615385
6379             Alu    52     TE_peak        NR 0.2708333333
6380             Alu   208     TE_peak        NR 1.0000000000
6381             Alu    83     TE_peak        NR 0.2785234899
6382            <NA>    NA not_TE_peak        NR           NA
6383             Alu    52     TE_peak        NR 0.1444444444
6384     hAT-Charlie   123     TE_peak        NR 1.0000000000
6385       ERVL-MaLR   494     TE_peak        NR 0.8758865248
6386             MIR    41     TE_peak        NR 0.2113402062
6387             MIR   167     TE_peak        NR 1.0000000000
6388              L2    86     TE_peak        NR 1.0000000000
6389   Simple_repeat    43     TE_peak        NR 1.0000000000
6390            ERV1   234     TE_peak   LR_open 0.7090909091
6391             Alu   105     TE_peak   LR_open 1.0000000000
6392             Alu    62     TE_peak   LR_open 0.5000000000
6393            <NA>    NA not_TE_peak        NR           NA
6394             Alu    11     TE_peak   LR_open 0.0873015873
6395             Alu    50     TE_peak   LR_open 0.1677852349
6396              L2   460     TE_peak   LR_open 0.4496578690
6397              L1    77     TE_peak EAR_close 0.1540000000
6398             Alu   240     TE_peak EAR_close 0.7476635514
6399             MIR    98     TE_peak        NR 0.5185185185
6400  Low_complexity    98     TE_peak        NR 1.0000000000
6401             MIR   139     TE_peak  ESR_open 0.8797468354
6402            ERV1  1034     TE_peak   LR_open 0.7343750000
6403            <NA>    NA not_TE_peak        NR           NA
6404              L1    67     TE_peak        NR 0.1529680365
6405              L2    62     TE_peak        NR 1.0000000000
6406            <NA>    NA not_TE_peak   LR_open           NA
6407              L1    28     TE_peak        NR 0.0242005186
6408     hAT-Charlie   534     TE_peak        NR 1.0000000000
6409              L1   241     TE_peak        NR 0.4829659319
6410            <NA>    NA not_TE_peak  LR_close           NA
6411            <NA>    NA not_TE_peak        NR           NA
6412             MIR    43     TE_peak        NR 1.0000000000
6413              L2   127     TE_peak        NR 1.0000000000
6414              L2    96     TE_peak        NR 1.0000000000
6415             Alu   116     TE_peak        NR 1.0000000000
6416             Alu    33     TE_peak        NR 0.3548387097
6417              L2   134     TE_peak        NR 1.0000000000
6418              L2   342     TE_peak        NR 0.9688385269
6419              L2   206     TE_peak  LR_close 0.6261398176
6420             MIR   242     TE_peak  LR_close 1.0000000000
6421              L2    89     TE_peak  LR_close 0.4218009479
6422             MIR    16     TE_peak        NR 0.0717488789
6423   Simple_repeat    29     TE_peak        NR 0.8787878788
6424              L2    45     TE_peak        NR 0.1982378855
6425            <NA>    NA not_TE_peak  LR_close           NA
6426            <NA>    NA not_TE_peak        NR           NA
6427       ERVL-MaLR     9     TE_peak   LR_open 0.0249307479
6428             CR1   154     TE_peak   LR_open 1.0000000000
6429             Alu   221     TE_peak   LR_open 0.7129032258
6430              L2   408     TE_peak  ESR_open 0.3136049193
6431             Alu   125     TE_peak   LR_open 0.4562043796
6432   Simple_repeat    35     TE_peak   LR_open 1.0000000000
6433              L2   106     TE_peak   LR_open 1.0000000000
6434            ERVL   302     TE_peak   LR_open 0.6344537815
6435            <NA>    NA not_TE_peak        NR           NA
6436             Alu    75     TE_peak   LR_open 0.2777777778
6437              L1   248     TE_peak   LR_open 1.0000000000
6438              L1    27     TE_peak   LR_open 1.0000000000
6439              L1   142     TE_peak   LR_open 0.4863013699
6440  Low_complexity    43     TE_peak        NR 1.0000000000
6441       5S-Deu-L2    88     TE_peak   LR_open 0.3437500000
6442           Gypsy   659     TE_peak        NR 0.6772867420
6443              L2   123     TE_peak        NR 1.0000000000
6444   Simple_repeat    67     TE_peak        NR 1.0000000000
6445   Simple_repeat   122     TE_peak        NR 1.0000000000
6446             MIR   130     TE_peak        NR 1.0000000000
6447  Low_complexity    63     TE_peak        NR 1.0000000000
6448  Low_complexity    36     TE_peak        NR 1.0000000000
6449   Simple_repeat    25     TE_peak        NR 0.6410256410
6450   Simple_repeat    64     TE_peak        NR 1.0000000000
6451            <NA>    NA not_TE_peak        NR           NA
6452             CR1     6     TE_peak   LR_open 0.0625000000
6453             MIR    75     TE_peak   LR_open 0.6944444444
6454             MIR   118     TE_peak        NR 1.0000000000
6455              L2    64     TE_peak        NR 0.1295546559
6456             MIR    38     TE_peak        NR 1.0000000000
6457   Simple_repeat    94     TE_peak        NR 1.0000000000
6458   Simple_repeat    37     TE_peak        NR 1.0000000000
6459              L2    60     TE_peak        NR 1.0000000000
6460            <NA>    NA not_TE_peak ESR_close           NA
6461             Alu   258     TE_peak        NR 0.8571428571
6462            ERVL   360     TE_peak        NR 1.0000000000
6463   Simple_repeat    42     TE_peak        NR 1.0000000000
6464            ERVL    13     TE_peak        NR 1.0000000000
6465             MIR    51     TE_peak        NR 0.2217391304
6466             Alu    41     TE_peak   LR_open 0.1423611111
6467              L2    90     TE_peak   LR_open 1.0000000000
6468             Alu   167     TE_peak        NR 0.5369774920
6469             Alu    97     TE_peak        NR 0.3321917808
6470   Simple_repeat    18     TE_peak        NR 1.0000000000
6471            ERV1   182     TE_peak   LR_open 0.4428223844
6472       ERVL-MaLR   357     TE_peak   LR_open 1.0000000000
6473            ERV1   209     TE_peak   LR_open 0.8893617021
6474             Alu   178     TE_peak        NR 0.6223776224
6475            ERV1    33     TE_peak        NR 1.0000000000
6476             MIR   159     TE_peak        NR 1.0000000000
6477             MIR   151     TE_peak        NR 1.0000000000
6478   Simple_repeat    40     TE_peak        NR 1.0000000000
6479              L2   299     TE_peak   LR_open 0.7475000000
6480             Alu    35     TE_peak   LR_open 0.1151315789
6481            <NA>    NA not_TE_peak        NR           NA
6482            <NA>    NA not_TE_peak        NR           NA
6483              L2   301     TE_peak        NR 0.7818181818
6484            <NA>    NA not_TE_peak        NR           NA
6485            <NA>    NA not_TE_peak        NR           NA
6486              L2   157     TE_peak        NR 1.0000000000
6487   Simple_repeat    35     TE_peak        NR 1.0000000000
6488            ERVL    76     TE_peak        NR 0.1909547739
6489             Alu   239     TE_peak        NR 1.0000000000
6490            ERVL   145     TE_peak        NR 0.7923497268
6491             Alu    97     TE_peak        NR 0.3415492958
6492            ERV1    44     TE_peak        NR 1.0000000000
6493            ERV1   354     TE_peak        NR 0.9030612245
6494             Alu   241     TE_peak        NR 0.8033333333
6495      hAT-Tip100    47     TE_peak        NR 1.0000000000
6496              L2   202     TE_peak        NR 1.0000000000
6497   Simple_repeat    45     TE_peak        NR 1.0000000000
6498             Alu   252     TE_peak        NR 0.8025477707
6499              L2   184     TE_peak        NR 1.0000000000
6500             Alu   150     TE_peak        NR 0.4901960784
6501             CR1   164     TE_peak   LR_open 0.6456692913
6502       ERVL-MaLR   131     TE_peak   LR_open 0.8911564626
6503             Alu    76     TE_peak        NR 0.2467532468
6504       ERVL-MaLR   271     TE_peak        NR 1.0000000000
6505             Alu    66     TE_peak        NR 0.2149837134
6506            <NA>    NA not_TE_peak        NR           NA
6507            <NA>    NA not_TE_peak        NR           NA
6508   Simple_repeat    29     TE_peak        NR 1.0000000000
6509             Alu   334     TE_peak        NR 1.0000000000
6510            <NA>    NA not_TE_peak        NR           NA
6511              L2   357     TE_peak        NR 1.0000000000
6512             MIR   194     TE_peak        NR 1.0000000000
6513            <NA>    NA not_TE_peak        NR           NA
6514   Simple_repeat    10     TE_peak   LR_open 0.2941176471
6515   Simple_repeat    15     TE_peak   LR_open 1.0000000000
6516             MIR    91     TE_peak        NR 0.6546762590
6517   Simple_repeat    68     TE_peak        NR 1.0000000000
6518   Simple_repeat    48     TE_peak        NR 1.0000000000
6519   Simple_repeat    43     TE_peak        NR 1.0000000000
6520             MIR   168     TE_peak ESR_close 0.7400881057
6521            <NA>    NA not_TE_peak ESR_close           NA
6522            <NA>    NA not_TE_peak        NR           NA
6523   Simple_repeat    39     TE_peak   LR_open 1.0000000000
6524   Simple_repeat    34     TE_peak   LR_open 1.0000000000
6525   Simple_repeat    55     TE_peak   LR_open 1.0000000000
6526   Simple_repeat     5     TE_peak   LR_open 0.1785714286
6527             Alu    65     TE_peak   LR_open 0.2188552189
6528             CR1    87     TE_peak        NR 1.0000000000
6529            <NA>    NA not_TE_peak        NR           NA
6530   Simple_repeat    85     TE_peak ESR_close 1.0000000000
6531      hAT-Tip100    40     TE_peak ESR_close 0.2580645161
6532   Simple_repeat    41     TE_peak   not_mrc 1.0000000000
6533              L2    86     TE_peak        NR 0.8113207547
6534   Simple_repeat    22     TE_peak        NR 1.0000000000
6535   Simple_repeat    32     TE_peak        NR 1.0000000000
6536  Low_complexity    68     TE_peak        NR 1.0000000000
6537            <NA>    NA not_TE_peak        NR           NA
6538   Simple_repeat     5     TE_peak   LR_open 0.1428571429
6539             CR1    33     TE_peak        NR 0.3707865169
6540             MIR   224     TE_peak        NR 1.0000000000
6541              L2    11     TE_peak EAR_close 0.1111111111
6542             MIR   190     TE_peak        NR 0.8333333333
6543              L2    47     TE_peak ESR_close 1.0000000000
6544   Simple_repeat    33     TE_peak        NR 1.0000000000
6545              L2    20     TE_peak        NR 0.2352941176
6546            <NA>    NA not_TE_peak  LR_close           NA
6547             MIR    15     TE_peak ESR_close 0.2205882353
6548            <NA>    NA not_TE_peak        NR           NA
6549             MIR   150     TE_peak  LR_close 1.0000000000
6550             MIR   151     TE_peak  LR_close 1.0000000000
6551   Simple_repeat    25     TE_peak  LR_close 1.0000000000
6552  Low_complexity    43     TE_peak  LR_close 1.0000000000
6553            <NA>    NA not_TE_peak  LR_close           NA
6554            <NA>    NA not_TE_peak        NR           NA
6555            <NA>    NA not_TE_peak        NR           NA
6556              L1   604     TE_peak        NR 0.8042609854
6557   Simple_repeat    44     TE_peak        NR 1.0000000000
6558   Simple_repeat    37     TE_peak        NR 1.0000000000
6559              L2    77     TE_peak        NR 0.6814159292
6560   Simple_repeat    25     TE_peak        NR 1.0000000000
6561   Simple_repeat     2     TE_peak        NR 0.0500000000
6562            <NA>    NA not_TE_peak        NR           NA
6563             MIR   124     TE_peak        NR 0.8322147651
6564             MIR   201     TE_peak        NR 1.0000000000
6565            ERVK   116     TE_peak        NR 0.1331802526
6566     hAT-Tip100?   120     TE_peak        NR 1.0000000000
6567             MIR    82     TE_peak  LR_close 0.7522935780
6568             MIR   138     TE_peak  LR_close 0.8263473054
6569            <NA>    NA not_TE_peak        NR           NA
6570            <NA>    NA not_TE_peak        NR           NA
6571              L1    61     TE_peak        NR 0.0106998772
6572   Simple_repeat    41     TE_peak        NR 1.0000000000
6573  Low_complexity    14     TE_peak        NR 1.0000000000
6574   Simple_repeat    32     TE_peak        NR 1.0000000000
6575             Alu   113     TE_peak        NR 0.3754152824
6576              L2    67     TE_peak        NR 1.0000000000
6577             MIR    11     TE_peak        NR 0.0544554455
6578              L2    92     TE_peak        NR 1.0000000000
6579   Simple_repeat    76     TE_peak   LR_open 1.0000000000
6580              L2   159     TE_peak   LR_open 0.2236286920
6581            <NA>    NA not_TE_peak        NR           NA
6582             MIR    32     TE_peak  LR_close 0.1361702128
6583              L2   214     TE_peak        NR 0.9224137931
6584            <NA>    NA not_TE_peak        NR           NA
6585            <NA>    NA not_TE_peak        NR           NA
6586             MIR   201     TE_peak EAR_close 1.0000000000
6587             MIR    37     TE_peak EAR_close 0.2067039106
6588   Simple_repeat    47     TE_peak    ESR_OC 1.0000000000
6589            <NA>    NA not_TE_peak        NR           NA
6590              L2   169     TE_peak        NR 0.8407960199
6591             Alu   116     TE_peak        NR 0.4410646388
6592              L2   351     TE_peak        NR 1.0000000000
6593   Simple_repeat    38     TE_peak        NR 1.0000000000
6594   Simple_repeat     1     TE_peak        NR 0.0161290323
6595     hAT-Charlie    71     TE_peak ESR_close 0.3127753304
6596             MIR   105     TE_peak ESR_close 1.0000000000
6597   Simple_repeat    27     TE_peak ESR_close 1.0000000000
6598   Simple_repeat    24     TE_peak ESR_close 1.0000000000
6599   Simple_repeat    33     TE_peak  EAR_open 0.3928571429
6600   Simple_repeat    81     TE_peak  EAR_open 1.0000000000
6601             MIR   125     TE_peak EAR_close 0.8680555556
6602            <NA>    NA not_TE_peak        NR           NA
6603             MIR    76     TE_peak        NR 0.5000000000
6604   Simple_repeat    36     TE_peak        NR 1.0000000000
6605   Simple_repeat    27     TE_peak   LR_open 1.0000000000
6606            <NA>    NA not_TE_peak        NR           NA
6607            <NA>    NA not_TE_peak   LR_open           NA
6608              L2   194     TE_peak        NR 0.6666666667
6609              L2     6     TE_peak  LR_close 0.0052219321
6610  Low_complexity    96     TE_peak        NR 1.0000000000
6611   Simple_repeat    17     TE_peak        NR 1.0000000000
6612             MIR   104     TE_peak ESR_close 0.4837209302
6613   Simple_repeat    12     TE_peak ESR_close 0.2500000000
6614  Low_complexity    10     TE_peak        NR 0.1265822785
6615   Simple_repeat   123     TE_peak        NR 1.0000000000
6616  Low_complexity    33     TE_peak        NR 0.2171052632
6617             MIR    12     TE_peak        NR 0.0875912409
6618              L2   133     TE_peak        NR 0.6751269036
6619              L2    53     TE_peak        NR 0.3785714286
6620              L2    45     TE_peak        NR 0.6818181818
6621            ERVL    71     TE_peak ESR_close 0.4034090909
6622              L2   183     TE_peak   LR_open 0.4507389163
6623             Alu   259     TE_peak        NR 0.8633333333
6624             MIR   202     TE_peak        NR 1.0000000000
6625              L2    63     TE_peak        NR 0.4344827586
6626    TcMar-Tigger   112     TE_peak   LR_open 1.0000000000
6627   Simple_repeat    34     TE_peak   LR_open 1.0000000000
6628             MIR   161     TE_peak   LR_open 1.0000000000
6629      hAT-Tip100    31     TE_peak        NR 0.6595744681
6630              L2    49     TE_peak        NR 0.2016460905
6631     hAT-Charlie    84     TE_peak        NR 0.4000000000
6632           Gypsy    80     TE_peak        NR 0.2857142857
6633           Gypsy   218     TE_peak        NR 1.0000000000
6634  Low_complexity    34     TE_peak        NR 1.0000000000
6635            <NA>    NA not_TE_peak        NR           NA
6636             MIR   196     TE_peak        NR 1.0000000000
6637             MIR   130     TE_peak   LR_open 1.0000000000
6638             MIR    28     TE_peak   LR_open 0.2074074074
6639             MIR    87     TE_peak        NR 0.4603174603
6640             MIR    53     TE_peak        NR 0.2078431373
6641            ERV1   194     TE_peak   LR_open 0.4409090909
6642   Simple_repeat    22     TE_peak        NR 0.6875000000
6643            <NA>    NA not_TE_peak        NR           NA
6644             MIR   153     TE_peak        NR 0.8547486034
6645              L2    22     TE_peak        NR 1.0000000000
6646             MIR    74     TE_peak  LR_close 1.0000000000
6647             MIR   100     TE_peak  LR_close 0.7299270073
6648             MIR    67     TE_peak  LR_close 1.0000000000
6649      hAT-Tip100    66     TE_peak   LR_open 1.0000000000
6650             MIR   128     TE_peak   LR_open 0.4980544747
6651            <NA>    NA not_TE_peak EAR_close           NA
6652            <NA>    NA not_TE_peak ESR_close           NA
6653             CR1    53     TE_peak   LR_open 1.0000000000
6654            <NA>    NA not_TE_peak        NR           NA
6655   Simple_repeat    52     TE_peak  LR_close 1.0000000000
6656            <NA>    NA not_TE_peak        NR           NA
6657             MIR    88     TE_peak   LR_open 0.6330935252
6658            <NA>    NA not_TE_peak        NR           NA
6659             MIR   143     TE_peak        NR 1.0000000000
6660            <NA>    NA not_TE_peak        NR           NA
6661              L2   145     TE_peak        NR 0.1629213483
6662              L2   183     TE_peak  LR_close 0.2056179775
6663              L2    99     TE_peak        NR 1.0000000000
6664    TcMar-Tigger    88     TE_peak        NR 0.2983050847
6665             MIR   178     TE_peak        NR 1.0000000000
6666             MIR   259     TE_peak        NR 1.0000000000
6667            <NA>    NA not_TE_peak        NR           NA
6668            <NA>    NA not_TE_peak ESR_close           NA
6669            <NA>    NA not_TE_peak   LR_open           NA
6670             MIR    31     TE_peak        NR 0.1722222222
6671             Alu   304     TE_peak        NR 1.0000000000
6672              L2   243     TE_peak        NR 1.0000000000
6673              L2    68     TE_peak        NR 1.0000000000
6674     hAT-Charlie   108     TE_peak        NR 0.5373134328
6675             MIR    69     TE_peak ESR_close 0.3150684932
6676             MIR    94     TE_peak   LR_open 0.6527777778
6677             MIR    63     TE_peak   LR_open 1.0000000000
6678              L2     2     TE_peak   LR_open 0.0434782609
6679            ERVL     4     TE_peak        NR 0.0144404332
6680              L2   227     TE_peak        NR 0.8376383764
6681              L2   139     TE_peak        NR 0.5582329317
6682              L2    49     TE_peak        NR 1.0000000000
6683             CR1    67     TE_peak        NR 1.0000000000
6684              L2    24     TE_peak        NR 0.0633245383
6685              L2   143     TE_peak        NR 1.0000000000
6686   Simple_repeat    67     TE_peak        NR 1.0000000000
6687   Simple_repeat    40     TE_peak        NR 1.0000000000
6688   Simple_repeat    49     TE_peak        NR 1.0000000000
6689   Simple_repeat    52     TE_peak        NR 1.0000000000
6690   TcMar-Mariner     6     TE_peak  LR_close 0.0882352941
6691             Alu    46     TE_peak   LR_open 0.1479099678
6692              L2   139     TE_peak   LR_open 1.0000000000
6693        tRNA-RTE    72     TE_peak   LR_open 1.0000000000
6694        RTE-BovB    51     TE_peak   LR_open 1.0000000000
6695            <NA>    NA not_TE_peak   LR_open           NA
6696             MIR    34     TE_peak        NR 0.2656250000
6697             CR1   119     TE_peak   LR_open 0.5085470085
6698              L2   139     TE_peak   LR_open 1.0000000000
6699              L2    35     TE_peak        NR 0.5468750000
6700   Simple_repeat    17     TE_peak        NR 1.0000000000
6701             MIR    28     TE_peak        NR 0.2314049587
6702             MIR    67     TE_peak   LR_open 0.3850574713
6703   Simple_repeat    21     TE_peak   LR_open 1.0000000000
6704              L2   164     TE_peak   LR_open 1.0000000000
6705             MIR    40     TE_peak ESR_close 0.1860465116
6706             CR1    75     TE_peak        NR 1.0000000000
6707              L2   136     TE_peak        NR 0.7157894737
6708            <NA>    NA not_TE_peak        NR           NA
6709            <NA>    NA not_TE_peak        NR           NA
6710             MIR   120     TE_peak   LR_open 0.6185567010
6711              L2    56     TE_peak   LR_open 0.5773195876
6712            <NA>    NA not_TE_peak EAR_close           NA
6713             MIR   109     TE_peak        NR 0.7218543046
6714     hAT-Charlie   171     TE_peak        NR 1.0000000000
6715             CR1    38     TE_peak        NR 1.0000000000
6716            <NA>    NA not_TE_peak        NR           NA
6717              L1   390     TE_peak        NR 0.2769886364
6718              L1    72     TE_peak   LR_open 0.1994459834
6719     hAT-Charlie   111     TE_peak        NR 0.6491228070
6720              L2    83     TE_peak   LR_open 1.0000000000
6721              L1    36     TE_peak   LR_open 0.1338289963
6722              L1    37     TE_peak   LR_open 1.0000000000
6723       ERVL-MaLR    52     TE_peak   LR_open 1.0000000000
6724   Simple_repeat   689     TE_peak   LR_open 0.9285714286
6725             MIR     3     TE_peak        NR 0.0202702703
6726            <NA>    NA not_TE_peak EAR_close           NA
6727             MIR   102     TE_peak        NR 0.4358974359
6728    TcMar-Tigger    26     TE_peak        NR 0.0577777778
6729              L1   328     TE_peak        NR 1.0000000000
6730              L1    79     TE_peak        NR 1.0000000000
6731              L1    38     TE_peak        NR 1.0000000000
6732              L1   249     TE_peak        NR 0.5030303030
6733   Simple_repeat    49     TE_peak        NR 1.0000000000
6734             MIR    84     TE_peak        NR 1.0000000000
6735            <NA>    NA not_TE_peak   LR_open           NA
6736     hAT-Charlie    29     TE_peak ESR_close 0.0650224215
6737           Gypsy   498     TE_peak ESR_close 0.8355704698
6738             MIR    13     TE_peak  LR_close 0.0764705882
6739             MIR   162     TE_peak        NR 0.7363636364
6740   Simple_repeat   109     TE_peak        NR 0.4022140221
6741   Simple_repeat    18     TE_peak        NR 1.0000000000
6742              L2   406     TE_peak        NR 0.5205128205
6743     hAT-Charlie   167     TE_peak  LR_close 0.8652849741
6744             MIR    68     TE_peak  LR_close 0.3469387755
6745              L2   314     TE_peak        NR 1.0000000000
6746            <NA>    NA not_TE_peak        NR           NA
6747             MIR    30     TE_peak  LR_close 0.1260504202
6748             MIR   132     TE_peak  LR_close 0.5322580645
6749           RTE-X   184     TE_peak  LR_close 1.0000000000
6750   Simple_repeat    41     TE_peak  LR_close 0.7735849057
6751             MIR   162     TE_peak        NR 0.9418604651
6752            <NA>    NA not_TE_peak ESR_close           NA
6753             MIR    45     TE_peak ESR_close 0.4017857143
6754             MIR   112     TE_peak        NR 1.0000000000
6755              L2    74     TE_peak        NR 0.6666666667
6756              L2   174     TE_peak  LR_close 0.6083916084
6757              L2    98     TE_peak  LR_close 1.0000000000
6758             MIR    43     TE_peak        NR 0.1692913386
6759              L2   153     TE_peak        NR 0.6219512195
6760     hAT-Charlie   113     TE_peak ESR_close 1.0000000000
6761             MIR   113     TE_peak ESR_close 1.0000000000
6762   Simple_repeat    27     TE_peak ESR_close 1.0000000000
6763             MIR   194     TE_peak ESR_close 1.0000000000
6764    TcMar-Tigger    67     TE_peak ESR_close 0.7362637363
6765            <NA>    NA not_TE_peak        NR           NA
6766            <NA>    NA not_TE_peak        NR           NA
6767             MIR    16     TE_peak        NR 0.0747663551
6768             MIR   155     TE_peak  LR_close 1.0000000000
6769            <NA>    NA not_TE_peak        NR           NA
6770            <NA>    NA not_TE_peak        NR           NA
6771            <NA>    NA not_TE_peak        NR           NA
6772              L2   285     TE_peak   LR_open 0.2484742807
6773            <NA>    NA not_TE_peak        NR           NA
6774       ERVL-MaLR   282     TE_peak   LR_open 0.5412667946
6775            <NA>    NA not_TE_peak   not_mrc           NA
6776             MIR    93     TE_peak        NR 0.8532110092
6777             MIR    52     TE_peak        NR 1.0000000000
6778              L2   168     TE_peak        NR 1.0000000000
6779   Simple_repeat    19     TE_peak        NR 1.0000000000
6780             MIR    11     TE_peak        NR 0.0523809524
6781              L2   100     TE_peak        NR 0.7042253521
6782             Alu   300     TE_peak        NR 1.0000000000
6783              L2    66     TE_peak        NR 1.0000000000
6784             MIR   184     TE_peak        NR 0.8803827751
6785   Simple_repeat    45     TE_peak        NR 1.0000000000
6786  Low_complexity    21     TE_peak        NR 1.0000000000
6787            <NA>    NA not_TE_peak        NR           NA
6788              L2   188     TE_peak        NR 0.6084142395
6789             MIR   139     TE_peak        NR 0.6233183857
6790             MIR    73     TE_peak        NR 1.0000000000
6791             MIR    25     TE_peak   LR_open 0.0968992248
6792             MIR    45     TE_peak        NR 0.4591836735
6793             MIR   136     TE_peak        NR 1.0000000000
6794   Simple_repeat    45     TE_peak   LR_open 1.0000000000
6795             MIR   202     TE_peak        NR 1.0000000000
6796              L2   163     TE_peak        NR 0.6197718631
6797             MIR    74     TE_peak ESR_close 0.3474178404
6798   Simple_repeat    25     TE_peak        NR 0.5000000000
6799   Simple_repeat    35     TE_peak        NR 1.0000000000
6800             MIR    86     TE_peak        NR 1.0000000000
6801             MIR    64     TE_peak        NR 0.3926380368
6802             MIR    73     TE_peak        NR 0.3041666667
6803              L2   113     TE_peak        NR 1.0000000000
6804             MIR   128     TE_peak  ESR_open 1.0000000000
6805   Simple_repeat   197     TE_peak  ESR_open 0.4436936937
6806       ERVL-MaLR   283     TE_peak        NR 0.6885644769
6807   Simple_repeat    29     TE_peak   LR_open 1.0000000000
6808            <NA>    NA not_TE_peak        NR           NA
6809            <NA>    NA not_TE_peak        NR           NA
6810             MIR   197     TE_peak   LR_open 1.0000000000
6811             MIR    60     TE_peak   LR_open 0.2586206897
6812   Simple_repeat    45     TE_peak        NR 1.0000000000
6813             CR1   317     TE_peak        NR 0.9378698225
6814             CR1   148     TE_peak   LR_open 0.2610229277
6815              L1    25     TE_peak  LR_close 0.0889679715
6816             MIR   115     TE_peak  LR_close 1.0000000000
6817            <NA>    NA not_TE_peak   LR_open           NA
6818             Alu    84     TE_peak    ESR_OC 0.2763157895
6819              L2   109     TE_peak    ESR_OC 1.0000000000
6820             MIR   103     TE_peak  ESR_open 0.5228426396
6821            <NA>    NA not_TE_peak   not_mrc           NA
6822              L1   630     TE_peak        NR 0.8689655172
6823            <NA>    NA not_TE_peak        NR           NA
6824             Alu   235     TE_peak   LR_open 1.0000000000
6825            <NA>    NA not_TE_peak   LR_open           NA
6826   Simple_repeat    21     TE_peak        NR 1.0000000000
6827            <NA>    NA not_TE_peak EAR_close           NA
6828            <NA>    NA not_TE_peak   LR_open           NA
6829            ERV1   397     TE_peak        NR 0.6572847682
6830              L1    67     TE_peak  LR_close 0.1037151703
6831    TcMar-Tigger    17     TE_peak        NR 0.0407673861
6832            ERV1   398     TE_peak        NR 1.0000000000
6833            ERV1    23     TE_peak        NR 0.3965517241
6834       ERVL-MaLR    90     TE_peak  LR_close 1.0000000000
6835             Alu   184     TE_peak  LR_close 1.0000000000
6836       ERVL-MaLR   241     TE_peak   LR_open 1.0000000000
6837             Alu   253     TE_peak   LR_open 0.8518518519
6838   Simple_repeat    26     TE_peak        NR 1.0000000000
6839   Simple_repeat    37     TE_peak        NR 1.0000000000
6840   Simple_repeat    26     TE_peak        NR 1.0000000000
6841   Simple_repeat    52     TE_peak        NR 1.0000000000
6842  Low_complexity   134     TE_peak        NR 1.0000000000
6843            <NA>    NA not_TE_peak  EAR_open           NA
6844  Low_complexity    46     TE_peak        NR 1.0000000000
6845       ERVL-MaLR   326     TE_peak        NR 0.7652582160
6846              L1   236     TE_peak        NR 0.7763157895
6847              L1   446     TE_peak   LR_open 0.3776460627
6848   Simple_repeat    22     TE_peak   LR_open 1.0000000000
6849   Simple_repeat    16     TE_peak   LR_open 0.4705882353
6850            <NA>    NA not_TE_peak        NR           NA
6851              L2    64     TE_peak        NR 0.0726447219
6852   Simple_repeat    40     TE_peak        NR 1.0000000000
6853     hAT-Charlie   219     TE_peak        NR 1.0000000000
6854              L2    86     TE_peak        NR 0.3644067797
6855              L2    44     TE_peak   LR_open 0.0866141732
6856   Simple_repeat    35     TE_peak        NR 1.0000000000
6857     hAT-Charlie   110     TE_peak   LR_open 0.8593750000
6858             Alu   104     TE_peak   LR_open 1.0000000000
6859             Alu   164     TE_peak   LR_open 1.0000000000
6860             MIR    56     TE_peak        NR 0.8888888889
6861             Alu   141     TE_peak   LR_open 1.0000000000
6862             MIR    48     TE_peak   LR_open 0.3333333333
6863             Alu    26     TE_peak        NR 0.0905923345
6864              L2   185     TE_peak        NR 1.0000000000
6865    TcMar-Tigger   278     TE_peak        NR 0.6666666667
6866            <NA>    NA not_TE_peak EAR_close           NA
6867             Alu    53     TE_peak        NR 0.1749174917
6868              L2    15     TE_peak   LR_open 0.0837988827
6869             Alu   132     TE_peak   LR_open 1.0000000000
6870              L2   228     TE_peak   LR_open 1.0000000000
6871             MIR   127     TE_peak   LR_open 1.0000000000
6872             MIR    22     TE_peak   LR_open 0.1078431373
6873              L2   464     TE_peak        NR 0.9978494624
6874             CR1    76     TE_peak   LR_open 0.8260869565
6875   Simple_repeat   103     TE_peak        NR 1.0000000000
6876     hAT-Charlie     4     TE_peak        NR 0.0444444444
6877             Alu   221     TE_peak        NR 0.6696969697
6878              L1   111     TE_peak        NR 1.0000000000
6879             MIR   243     TE_peak        NR 1.0000000000
6880     hAT-Charlie   142     TE_peak        NR 1.0000000000
6881            <NA>    NA not_TE_peak        NR           NA
6882            <NA>    NA not_TE_peak  ESR_open           NA
6883             MIR   101     TE_peak        NR 0.3914728682
6884            <NA>    NA not_TE_peak  LR_close           NA
6885            <NA>    NA not_TE_peak        NR           NA
6886             Alu   226     TE_peak   LR_open 0.7361563518
6887             Alu   164     TE_peak   LR_open 0.5503355705
6888            <NA>    NA not_TE_peak        NR           NA
6889             MIR    67     TE_peak        NR 0.6090909091
6890             Alu   129     TE_peak        NR 1.0000000000
6891       ERVL-MaLR   299     TE_peak        NR 0.8794117647
6892  Low_complexity    58     TE_peak        NR 1.0000000000
6893   Simple_repeat    75     TE_peak        NR 1.0000000000
6894              L2    25     TE_peak   LR_open 0.0868055556
6895              L2   236     TE_peak   LR_open 1.0000000000
6896             Alu   141     TE_peak   LR_open 0.8150289017
6897   Simple_repeat    40     TE_peak   LR_open 1.0000000000
6898   Simple_repeat    10     TE_peak   LR_open 0.5263157895
6899             Alu   143     TE_peak   LR_open 0.5088967972
6900            ERV1   481     TE_peak   LR_open 0.8825688073
6901   Simple_repeat    19     TE_peak        NR 1.0000000000
6902   Simple_repeat    42     TE_peak        NR 1.0000000000
6903     hAT-Charlie   114     TE_peak        NR 1.0000000000
6904             Alu    64     TE_peak        NR 0.2253521127
6905   Simple_repeat    35     TE_peak        NR 1.0000000000
6906             MIR   200     TE_peak   LR_open 1.0000000000
6907             MIR   164     TE_peak   LR_open 1.0000000000
6908             MIR   191     TE_peak   LR_open 1.0000000000
6909             MIR   146     TE_peak   LR_open 1.0000000000
6910             Alu    47     TE_peak   LR_open 0.2117117117
6911             MIR   147     TE_peak        NR 0.8352272727
6912             MIR   108     TE_peak        NR 0.5654450262
6913             MIR    45     TE_peak        NR 0.1923076923
6914   Simple_repeat    27     TE_peak        NR 1.0000000000
6915             Alu    57     TE_peak        NR 0.4351145038
6916             MIR    73     TE_peak        NR 1.0000000000
6917        RTE-BovB    74     TE_peak        NR 0.6491228070
6918            <NA>    NA not_TE_peak  EAR_open           NA
6919              L2    54     TE_peak   LR_open 0.1565217391
6920       ERVL-MaLR   520     TE_peak   LR_open 1.0000000000
6921              L2   365     TE_peak   LR_open 1.0000000000
6922             MIR   133     TE_peak   LR_open 1.0000000000
6923             Alu   293     TE_peak   LR_open 1.0000000000
6924             MIR   104     TE_peak   LR_open 1.0000000000
6925            LTR?     2     TE_peak   LR_open 0.0158730159
6926             Alu    38     TE_peak   LR_open 0.1254125413
6927              L2    44     TE_peak   LR_open 1.0000000000
6928              L2   161     TE_peak   LR_open 1.0000000000
6929       ERVL-MaLR    16     TE_peak   LR_open 0.0500000000
6930             MIR   110     TE_peak        NR 0.7692307692
6931            <NA>    NA not_TE_peak        NR           NA
6932              L2    99     TE_peak        NR 0.9082568807
6933             MIR   157     TE_peak        NR 1.0000000000
6934             Alu   155     TE_peak  LR_close 0.5098684211
6935              L1   110     TE_peak  LR_close 1.0000000000
6936             MIR    90     TE_peak  LR_close 1.0000000000
6937     hAT-Charlie   129     TE_peak  LR_close 1.0000000000
6938             Alu   102     TE_peak  LR_close 0.3355263158
6939     hAT-Charlie    69     TE_peak  LR_close 0.4233128834
6940              L2   245     TE_peak  LR_close 0.6920903955
6941              L2   227     TE_peak        NR 0.6358543417
6942              L2   319     TE_peak        NR 0.8529411765
6943            <NA>    NA not_TE_peak        NR           NA
6944    TcMar-Tigger   448     TE_peak        NR 0.9105691057
6945             Alu   126     TE_peak        NR 0.4038461538
6946             Alu    83     TE_peak   LR_open 0.2703583062
6947              L2   129     TE_peak   LR_open 1.0000000000
6948     hAT-Charlie     1     TE_peak   LR_open 0.0007272727
6949  Low_complexity    41     TE_peak  LR_close 1.0000000000
6950            <NA>    NA not_TE_peak   not_mrc           NA
6951             Alu   264     TE_peak   LR_open 0.9850746269
6952            <NA>    NA not_TE_peak  LR_close           NA
6953     hAT-Charlie   109     TE_peak        NR 1.0000000000
6954             MIR   100     TE_peak        NR 1.0000000000
6955            <NA>    NA not_TE_peak        NR           NA
6956              L2   155     TE_peak        NR 1.0000000000
6957            <NA>    NA not_TE_peak  EAR_open           NA
6958              L1    57     TE_peak        NR 0.2794117647
6959      hAT-Tip100    56     TE_peak        NR 1.0000000000
6960    TcMar-Tigger   141     TE_peak        NR 1.0000000000
6961             Alu   103     TE_peak        NR 0.3388157895
6962             Alu    42     TE_peak  LR_close 0.2470588235
6963             Alu   133     TE_peak  LR_close 1.0000000000
6964   Simple_repeat    29     TE_peak  LR_close 1.0000000000
6965             MIR   181     TE_peak  LR_close 1.0000000000
6966             Alu   103     TE_peak  LR_close 1.0000000000
6967             Alu   232     TE_peak   LR_open 0.9243027888
6968             CR1    14     TE_peak        NR 0.0387811634
6969   Simple_repeat    44     TE_peak        NR 1.0000000000
6970             MIR    36     TE_peak   LR_open 0.1846153846
6971   Simple_repeat    31     TE_peak   LR_open 1.0000000000
6972             Alu   330     TE_peak   LR_open 1.0000000000
6973             Alu   157     TE_peak   LR_open 1.0000000000
6974              L2   355     TE_peak   LR_open 0.9861111111
6975              L2   214     TE_peak   LR_open 1.0000000000
6976              L2    22     TE_peak        NR 0.2417582418
6977       ERVL-MaLR    83     TE_peak        NR 0.5424836601
6978              L2   128     TE_peak   LR_open 1.0000000000
6979             MIR     1     TE_peak   LR_open 0.0126582278
6980             Alu   229     TE_peak   LR_open 0.7633333333
6981             MIR     9     TE_peak   LR_open 0.0596026490
6982             MIR   244     TE_peak  LR_close 1.0000000000
6983             MIR    69     TE_peak        NR 1.0000000000
6984             Alu    77     TE_peak        NR 0.2627986348
6985             Alu   171     TE_peak   LR_open 0.6173285199
6986            ERVL   239     TE_peak   LR_open 1.0000000000
6987             MIR    67     TE_peak   LR_open 1.0000000000
6988             Alu    28     TE_peak   LR_open 0.0883280757
6989            <NA>    NA not_TE_peak        NR           NA
6990  Low_complexity    38     TE_peak        NR 1.0000000000
6991              L2   113     TE_peak        NR 0.6312849162
6992             Alu   292     TE_peak        NR 1.0000000000
6993             MIR    35     TE_peak        NR 0.2611940299
6994             Alu   227     TE_peak   LR_open 0.7442622951
6995            ERV1   390     TE_peak   LR_open 0.8609271523
6996            ERVK   542     TE_peak        NR 0.5604963806
6997            <NA>    NA not_TE_peak        NR           NA
6998   Simple_repeat    24     TE_peak        NR 1.0000000000
6999             MIR    19     TE_peak        NR 0.1570247934
7000             MIR    55     TE_peak   LR_open 1.0000000000
7001   Simple_repeat    36     TE_peak        NR 1.0000000000
7002            ERVL   479     TE_peak        NR 0.2437659033
7003            ERVL    39     TE_peak        NR 0.1572580645
7004            ERVL   401     TE_peak        NR 0.9828431373
7005              L1   136     TE_peak   not_mrc 1.0000000000
7006   Simple_repeat    40     TE_peak   not_mrc 1.0000000000
7007             Alu   107     TE_peak   not_mrc 0.4053030303
7008              L1   483     TE_peak        NR 0.4873864783
7009             Alu    81     TE_peak        NR 0.2745762712
7010             Alu    32     TE_peak        NR 0.1118881119
7011            ERVL   100     TE_peak        NR 1.0000000000
7012   Simple_repeat    27     TE_peak        NR 1.0000000000
7013            ERVL   148     TE_peak        NR 1.0000000000
7014   Simple_repeat    89     TE_peak        NR 1.0000000000
7015             MIR    58     TE_peak        NR 1.0000000000
7016              L1   221     TE_peak        NR 0.4633123690
7017             Alu    65     TE_peak        NR 0.2226027397
7018            ERV1  1606     TE_peak        NR 1.0000000000
7019        RTE-BovB    70     TE_peak        NR 0.7291666667
7020            <NA>    NA not_TE_peak ESR_close           NA
7021     hAT-Charlie    28     TE_peak        NR 0.1739130435
7022              L2   541     TE_peak        NR 1.0000000000
7023   Simple_repeat    40     TE_peak        NR 1.0000000000
7024   Simple_repeat    46     TE_peak        NR 1.0000000000
7025            <NA>    NA not_TE_peak        NR           NA
7026             Alu   204     TE_peak        NR 0.7157894737
7027             MIR   128     TE_peak        NR 1.0000000000
7028              L2    56     TE_peak        NR 1.0000000000
7029              L2    64     TE_peak        NR 1.0000000000
7030       ERVL-MaLR   369     TE_peak        NR 0.7735849057
7031            <NA>    NA not_TE_peak        NR           NA
7032            <NA>    NA not_TE_peak  LR_close           NA
7033              L1   141     TE_peak EAR_close 0.6811594203
7034             Alu   283     TE_peak EAR_close 0.9826388889
7035              L2   120     TE_peak  EAR_open 0.2992518703
7036             CR1   137     TE_peak  EAR_open 0.9319727891
7037   Simple_repeat    41     TE_peak        NR 1.0000000000
7038  Low_complexity   118     TE_peak        NR 1.0000000000
7039             MIR    32     TE_peak   LR_open 0.1553398058
7040              L2   349     TE_peak   LR_open 0.9184210526
7041             MIR   130     TE_peak        NR 1.0000000000
7042             MIR    84     TE_peak        NR 1.0000000000
7043              L2   100     TE_peak        NR 1.0000000000
7044   Simple_repeat    50     TE_peak        NR 1.0000000000
7045              L2   194     TE_peak   LR_open 1.0000000000
7046             MIR    71     TE_peak   LR_open 1.0000000000
7047              L2   106     TE_peak   LR_open 1.0000000000
7048              L2   216     TE_peak  LR_close 1.0000000000
7049             MIR   178     TE_peak        NR 1.0000000000
7050             MIR    93     TE_peak   LR_open 0.6838235294
7051              L2    77     TE_peak   LR_open 1.0000000000
7052   Simple_repeat    51     TE_peak   LR_open 1.0000000000
7053             Alu   251     TE_peak   LR_open 1.0000000000
7054              L2   309     TE_peak   LR_open 1.0000000000
7055     hAT-Charlie   187     TE_peak   LR_open 1.0000000000
7056              L2   145     TE_peak   LR_open 1.0000000000
7057             Alu    59     TE_peak        NR 0.1973244147
7058     hAT-Charlie    87     TE_peak        NR 0.7565217391
7059             MIR    50     TE_peak        NR 1.0000000000
7060             CR1    59     TE_peak    ESR_OC 0.5900000000
7061      hAT-Tip100   148     TE_peak    ESR_OC 1.0000000000
7062             MIR   134     TE_peak        NR 0.9503546099
7063             MIR    44     TE_peak        NR 1.0000000000
7064             Alu    31     TE_peak        NR 0.1036789298
7065             Alu   223     TE_peak        NR 0.7508417508
7066             Alu   254     TE_peak        NR 0.8382838284
7067              L2   128     TE_peak        NR 1.0000000000
7068   Simple_repeat    26     TE_peak        NR 1.0000000000
7069              L2   123     TE_peak        NR 1.0000000000
7070              L2    71     TE_peak        NR 1.0000000000
7071             MIR    69     TE_peak        NR 0.9200000000
7072             MIR    72     TE_peak        NR 1.0000000000
7073             Alu   108     TE_peak        NR 0.7605633803
7074             Alu   143     TE_peak   LR_open 0.8218390805
7075              L2   159     TE_peak   LR_open 1.0000000000
7076             Alu    26     TE_peak   LR_open 0.0855263158
7077            <NA>    NA not_TE_peak        NR           NA
7078   Simple_repeat    30     TE_peak        NR 1.0000000000
7079             Alu    55     TE_peak  LR_close 0.1774193548
7080    TcMar-Tigger    94     TE_peak  LR_close 1.0000000000
7081    TcMar-Tigger    80     TE_peak  LR_close 1.0000000000
7082             MIR    66     TE_peak  LR_close 1.0000000000
7083             Alu    67     TE_peak  LR_close 0.2310344828
7084              L1   232     TE_peak        NR 0.5471698113
7085             Alu   253     TE_peak        NR 1.0000000000
7086              L1    45     TE_peak        NR 1.0000000000
7087             Alu   165     TE_peak        NR 0.5593220339
7088             Alu    67     TE_peak        NR 0.2271186441
7089            ERVL   155     TE_peak        NR 1.0000000000
7090            ERVL   183     TE_peak        NR 0.2909379968
7091            ERVL   336     TE_peak        NR 0.5341812401
7092            ERVL   311     TE_peak        NR 1.0000000000
7093             Alu    76     TE_peak        NR 0.2533333333
7094     hAT-Charlie   112     TE_peak        NR 0.6054054054
7095   Simple_repeat    26     TE_peak        NR 1.0000000000
7096             MIR     7     TE_peak        NR 0.0275590551
7097             Alu   107     TE_peak   LR_open 0.3440514469
7098             Alu   300     TE_peak   LR_open 1.0000000000
7099              L2    46     TE_peak        NR 0.2513661202
7100             Alu   120     TE_peak        NR 1.0000000000
7101   Simple_repeat    28     TE_peak        NR 1.0000000000
7102             Alu    13     TE_peak        NR 0.0457746479
7103             Alu   214     TE_peak   LR_open 0.6903225806
7104            ERV1   326     TE_peak   LR_open 1.0000000000
7105             Alu    30     TE_peak   LR_open 0.0974025974
7106   Simple_repeat     9     TE_peak        NR 0.5294117647
7107   Simple_repeat    40     TE_peak        NR 1.0000000000
7108   Simple_repeat    55     TE_peak        NR 0.9821428571
7109             Alu   254     TE_peak        NR 1.0000000000
7110              L1    93     TE_peak        NR 1.0000000000
7111              L1    26     TE_peak        NR 1.0000000000
7112             SVA   273     TE_peak        NR 0.1641611545
7113            <NA>    NA not_TE_peak        NR           NA
7114            <NA>    NA not_TE_peak  LR_close           NA
7115            <NA>    NA not_TE_peak   LR_open           NA
7116             MIR   127     TE_peak        NR 1.0000000000
7117              L2   289     TE_peak        NR 0.7279596977
7118             Alu    47     TE_peak        NR 0.1546052632
7119             Alu   133     TE_peak        NR 0.8260869565
7120            ERVL   231     TE_peak        NR 0.8461538462
7121            <NA>    NA not_TE_peak        NR           NA
7122              L2    24     TE_peak        NR 0.3428571429
7123              L2   876     TE_peak        NR 0.7899008115
7124              L2   254     TE_peak  LR_close 0.7134831461
7125       ERVL-MaLR   391     TE_peak        NR 0.7294776119
7126              L2   284     TE_peak   LR_open 1.0000000000
7127              L2   211     TE_peak   LR_open 0.6593750000
7128            <NA>    NA not_TE_peak  LR_close           NA
7129             MIR    71     TE_peak        NR 1.0000000000
7130            <NA>    NA not_TE_peak        NR           NA
7131              L2    65     TE_peak  ESR_open 0.2076677316
7132             MIR    64     TE_peak  ESR_open 1.0000000000
7133              L2   171     TE_peak        NR 0.9095744681
7134              L2    46     TE_peak        NR 0.6571428571
7135            <NA>    NA not_TE_peak  LR_close           NA
7136            ERV1   118     TE_peak   LR_open 1.0000000000
7137            ERV1   179     TE_peak   LR_open 1.0000000000
7138            ERV1    50     TE_peak   LR_open 0.3086419753
7139              L2   295     TE_peak        NR 1.0000000000
7140             CR1   191     TE_peak        NR 1.0000000000
7141             hAT   124     TE_peak   LR_open 1.0000000000
7142             MIR   144     TE_peak   LR_open 0.9795918367
7143        Helitron   183     TE_peak        NR 1.0000000000
7144              L2    40     TE_peak        NR 1.0000000000
7145     hAT-Charlie    33     TE_peak        NR 1.0000000000
7146             Alu    15     TE_peak        NR 0.0517241379
7147            <NA>    NA not_TE_peak EAR_close           NA
7148            <NA>    NA not_TE_peak        NR           NA
7149            ERVK   572     TE_peak        NR 0.5964546403
7150            <NA>    NA not_TE_peak        NR           NA
7151             MIR    29     TE_peak        NR 0.1457286432
7152              L1    45     TE_peak        NR 1.0000000000
7153   Simple_repeat    32     TE_peak        NR 1.0000000000
7154              L2   372     TE_peak        NR 0.7395626243
7155             MIR    62     TE_peak        NR 1.0000000000
7156              L2   228     TE_peak        NR 1.0000000000
7157              L2   232     TE_peak        NR 1.0000000000
7158              L2   175     TE_peak EAR_close 1.0000000000
7159              L2   232     TE_peak EAR_close 0.5576923077
7160             MIR   113     TE_peak        NR 1.0000000000
7161              L2    78     TE_peak        NR 1.0000000000
7162    TcMar-Tigger    77     TE_peak        NR 0.4074074074
7163            <NA>    NA not_TE_peak        NR           NA
7164            <NA>    NA not_TE_peak    ESR_OC           NA
7165            <NA>    NA not_TE_peak        NR           NA
7166              L2   203     TE_peak  ESR_open 0.7718631179
7167             MIR    73     TE_peak  EAR_open 0.4055555556
7168         Unknown   216     TE_peak  EAR_open 1.0000000000
7169             MIR   149     TE_peak  LR_close 1.0000000000
7170             MIR   168     TE_peak        NR 1.0000000000
7171   Simple_repeat    40     TE_peak        NR 1.0000000000
7172             MIR   169     TE_peak        NR 0.8535353535
7173             MIR   150     TE_peak        NR 1.0000000000
7174             MIR   118     TE_peak ESR_close 0.6592178771
7175             MIR    75     TE_peak  LR_close 0.6250000000
7176  Low_complexity    45     TE_peak  LR_close 1.0000000000
7177   Simple_repeat    17     TE_peak  LR_close 0.4857142857
7178   Simple_repeat    63     TE_peak        NR 1.0000000000
7179              L2    92     TE_peak        NR 0.6618705036
7180             MIR   179     TE_peak        NR 0.8994974874
7181             MIR   134     TE_peak        NR 1.0000000000
7182   Simple_repeat    27     TE_peak  LR_close 0.5000000000
7183     hAT-Charlie   140     TE_peak  LR_close 1.0000000000
7184              L1    66     TE_peak  LR_close 1.0000000000
7185  Low_complexity    37     TE_peak  LR_close 1.0000000000
7186            ERVL   292     TE_peak  LR_close 1.0000000000
7187             MIR    27     TE_peak  LR_close 0.1928571429
7188       ERVL-MaLR   135     TE_peak ESR_close 0.7142857143
7189             MIR   224     TE_peak        NR 1.0000000000
7190             MIR    59     TE_peak        NR 1.0000000000
7191            <NA>    NA not_TE_peak        NR           NA
7192              L2   110     TE_peak  LR_close 0.5913978495
7193   Simple_repeat    63     TE_peak  LR_close 1.0000000000
7194             MIR   136     TE_peak        NR 1.0000000000
7195   Simple_repeat    30     TE_peak        NR 1.0000000000
7196            <NA>    NA not_TE_peak        NR           NA
7197              L2    61     TE_peak   LR_open 1.0000000000
7198              L2   112     TE_peak   LR_open 0.2647754137
7199            <NA>    NA not_TE_peak  ESR_open           NA
7200            ERVK   290     TE_peak        NR 0.2865612648
7201            ERVL   529     TE_peak        NR 0.5990939977
7202             MIR   283     TE_peak        NR 1.0000000000
7203            ERV1    65     TE_peak        NR 0.1585365854
7204             MIR    83     TE_peak ESR_close 1.0000000000
7205             MIR    16     TE_peak ESR_close 0.0851063830
7206              L2   154     TE_peak   LR_open 1.0000000000
7207             MIR   122     TE_peak ESR_close 0.6192893401
7208             Alu    48     TE_peak ESR_close 0.1589403974
7209              L2    11     TE_peak ESR_close 0.0277078086
7210            <NA>    NA not_TE_peak        NR           NA
7211              L2   122     TE_peak  LR_close 1.0000000000
7212            <NA>    NA not_TE_peak        NR           NA
7213   Simple_repeat    26     TE_peak   not_mrc 1.0000000000
7214            <NA>    NA not_TE_peak ESR_close           NA
7215             MIR    66     TE_peak  LR_close 1.0000000000
7216             MIR   162     TE_peak  LR_close 1.0000000000
7217            <NA>    NA not_TE_peak        NR           NA
7218   Simple_repeat   497     TE_peak   LR_open 0.9359698682
7219              L2   185     TE_peak   LR_open 1.0000000000
7220              L1   245     TE_peak ESR_close 0.2614727855
7221             MIR   194     TE_peak  ESR_open 1.0000000000
7222             MIR   117     TE_peak ESR_close 1.0000000000
7223              L2    31     TE_peak ESR_close 0.5961538462
7224            <NA>    NA not_TE_peak        NR           NA
7225             MIR     2     TE_peak        NR 0.0135135135
7226             CR1    25     TE_peak        NR 0.2577319588
7227              L2   106     TE_peak        NR 1.0000000000
7228              L2   194     TE_peak        NR 1.0000000000
7229              L2   130     TE_peak ESR_close 0.8724832215
7230            <NA>    NA not_TE_peak        NR           NA
7231              L2   138     TE_peak        NR 0.6418604651
7232             MIR   130     TE_peak        NR 1.0000000000
7233             MIR    68     TE_peak        NR 0.6415094340
7234              L2    30     TE_peak        NR 0.1587301587
7235              L2   137     TE_peak        NR 1.0000000000
7236              L2   281     TE_peak        NR 0.6627358491
7237              L2    84     TE_peak ESR_close 0.7777777778
7238   Simple_repeat    38     TE_peak        NR 1.0000000000
7239            <NA>    NA not_TE_peak        NR           NA
7240            <NA>    NA not_TE_peak  LR_close           NA
7241            <NA>    NA not_TE_peak        NR           NA
7242             MIR   184     TE_peak        NR 0.8518518519
7243             MIR    75     TE_peak        NR 0.5067567568
7244   Simple_repeat    47     TE_peak        NR 1.0000000000
7245            <NA>    NA not_TE_peak        NR           NA
7246       ERVL-MaLR   300     TE_peak        NR 0.8310249307
7247       ERVL-MaLR   286     TE_peak   LR_open 0.8148148148
7248   Simple_repeat    40     TE_peak        NR 1.0000000000
7249            <NA>    NA not_TE_peak        NR           NA
7250            <NA>    NA not_TE_peak        NR           NA
7251       ERVL-MaLR   139     TE_peak        NR 0.5285171103
7252              L1   501     TE_peak        NR 0.6752021563
7253              L1   226     TE_peak   not_mrc 0.2868020305
7254            ERV1   738     TE_peak        NR 0.4470018171
7255             MIR    53     TE_peak        NR 0.3925925926
7256              L2   376     TE_peak        NR 0.7067669173
7257            <NA>    NA not_TE_peak        NR           NA
7258              L2    82     TE_peak        NR 1.0000000000
7259              L2    90     TE_peak        NR 0.5142857143
7260   Simple_repeat    39     TE_peak        NR 1.0000000000
7261              L2    28     TE_peak        NR 0.1064638783
7262             Alu   114     TE_peak        NR 0.3725490196
7263   Simple_repeat    21     TE_peak        NR 1.0000000000
7264             MIR    67     TE_peak        NR 0.3268292683
7265              L2    49     TE_peak        NR 0.3888888889
7266              L2    67     TE_peak   LR_open 0.2427536232
7267   Simple_repeat    55     TE_peak        NR 0.7432432432
7268            <NA>    NA not_TE_peak        NR           NA
7269   Simple_repeat    42     TE_peak  LR_close 1.0000000000
7270              L2    21     TE_peak   LR_open 0.2876712329
7271              L2   101     TE_peak   LR_open 1.0000000000
7272             MIR   212     TE_peak   LR_open 1.0000000000
7273             MIR   135     TE_peak        NR 1.0000000000
7274            <NA>    NA not_TE_peak   LR_open           NA
7275             Alu   264     TE_peak   LR_open 1.0000000000
7276              L2     8     TE_peak        NR 0.0522875817
7277             MIR   181     TE_peak        NR 1.0000000000
7278             MIR   155     TE_peak        NR 1.0000000000
7279             MIR   142     TE_peak        NR 1.0000000000
7280            <NA>    NA not_TE_peak   LR_open           NA
7281             MIR   203     TE_peak        NR 1.0000000000
7282              L1    80     TE_peak        NR 0.3149606299
7283             MIR    66     TE_peak        NR 1.0000000000
7284             Alu    92     TE_peak ESR_close 0.4181818182
7285             MIR   136     TE_peak        NR 1.0000000000
7286             CR1   120     TE_peak ESR_close 1.0000000000
7287             MIR   120     TE_peak ESR_close 1.0000000000
7288             MIR     2     TE_peak        NR 0.0277777778
7289            <NA>    NA not_TE_peak   LR_open           NA
7290            <NA>    NA not_TE_peak        NR           NA
7291             MIR   117     TE_peak        NR 1.0000000000
7292              L2   168     TE_peak ESR_close 0.8983957219
7293              L2    92     TE_peak ESR_close 0.4532019704
7294            <NA>    NA not_TE_peak ESR_close           NA
7295             CR1   137     TE_peak EAR_close 1.0000000000
7296            <NA>    NA not_TE_peak        NR           NA
7297            <NA>    NA not_TE_peak        NR           NA
7298   Simple_repeat    28     TE_peak   LR_open 1.0000000000
7299            <NA>    NA not_TE_peak        NR           NA
7300             MIR   100     TE_peak        NR 1.0000000000
7301   Simple_repeat    20     TE_peak ESR_close 1.0000000000
7302             MIR   103     TE_peak ESR_close 0.4401709402
7303             MIR   128     TE_peak   LR_open 1.0000000000
7304             MIR   114     TE_peak        NR 0.5816326531
7305            <NA>    NA not_TE_peak  LR_close           NA
7306             MIR   115     TE_peak        NR 1.0000000000
7307             MIR   198     TE_peak        NR 1.0000000000
7308            <NA>    NA not_TE_peak        NR           NA
7309             MIR   163     TE_peak        NR 1.0000000000
7310              L2    50     TE_peak        NR 1.0000000000
7311            <NA>    NA not_TE_peak  LR_close           NA
7312             MIR    11     TE_peak        NR 0.0452674897
7313             MIR    28     TE_peak        NR 0.1676646707
7314   Simple_repeat     5     TE_peak        NR 0.2000000000
7315             MIR   121     TE_peak        NR 1.0000000000
7316       TcMar-Tc2   115     TE_peak        NR 0.3372434018
7317            <NA>    NA not_TE_peak EAR_close           NA
7318              L2     7     TE_peak        NR 0.0522388060
7319             MIR   109     TE_peak        NR 0.5677083333
7320            <NA>    NA not_TE_peak ESR_close           NA
7321            <NA>    NA not_TE_peak        NR           NA
7322            <NA>    NA not_TE_peak  ESR_open           NA
7323   Simple_repeat    85     TE_peak  LR_close 1.0000000000
7324   Simple_repeat    73     TE_peak  LR_close 1.0000000000
7325   Simple_repeat    31     TE_peak  LR_close 1.0000000000
7326   Simple_repeat    56     TE_peak  LR_close 1.0000000000
7327   Simple_repeat    28     TE_peak        NR 1.0000000000
7328            <NA>    NA not_TE_peak   LR_open           NA
7329       ERVL-MaLR   208     TE_peak  LR_close 0.6910299003
7330              L2   170     TE_peak  LR_close 1.0000000000
7331             Alu    80     TE_peak  LR_close 0.4519774011
7332   Simple_repeat    30     TE_peak        NR 1.0000000000
7333             MIR    81     TE_peak        NR 0.6532258065
7334  Low_complexity    35     TE_peak        NR 1.0000000000
7335   Simple_repeat    31     TE_peak        NR 1.0000000000
7336             MIR   210     TE_peak ESR_close 1.0000000000
7337             MIR   160     TE_peak        NR 0.7619047619
7338             MIR   138     TE_peak        NR 1.0000000000
7339             MIR    59     TE_peak        NR 0.3687500000
7340             MIR    46     TE_peak  LR_close 1.0000000000
7341            <NA>    NA not_TE_peak        NR           NA
7342   Simple_repeat    17     TE_peak        NR 1.0000000000
7343  Low_complexity    18     TE_peak        NR 1.0000000000
7344   Simple_repeat    48     TE_peak        NR 1.0000000000
7345             MIR   137     TE_peak        NR 1.0000000000
7346              L2   104     TE_peak EAR_close 0.2626262626
7347             Alu   237     TE_peak   LR_open 0.8033898305
7348              L2    84     TE_peak        NR 0.8484848485
7349              L2   173     TE_peak        NR 1.0000000000
7350            <NA>    NA not_TE_peak ESR_close           NA
7351              L2   110     TE_peak        NR 0.2534562212
7352              L2   162     TE_peak        NR 1.0000000000
7353             MIR   174     TE_peak        NR 1.0000000000
7354              L2   257     TE_peak        NR 1.0000000000
7355              L2    71     TE_peak ESR_close 0.2817460317
7356             SVA   127     TE_peak  EAR_open 0.0648621042
7357             Alu   217     TE_peak  EAR_open 1.0000000000
7358             MIR   240     TE_peak  EAR_open 1.0000000000
7359              L2    75     TE_peak  EAR_open 1.0000000000
7360             Alu   137     TE_peak  EAR_open 1.0000000000
7361             Alu    37     TE_peak  EAR_open 0.1213114754
7362            <NA>    NA not_TE_peak EAR_close           NA
7363              L2    45     TE_peak ESR_close 0.3308823529
7364              L1   112     TE_peak        NR 0.1679160420
7365            <NA>    NA not_TE_peak ESR_close           NA
7366              L2    44     TE_peak ESR_close 0.3577235772
7367              L2   319     TE_peak ESR_close 1.0000000000
7368   Simple_repeat   138     TE_peak   not_mrc 1.0000000000
7369             MIR    14     TE_peak   not_mrc 0.0864197531
7370            <NA>    NA not_TE_peak   LR_open           NA
7371              L2   109     TE_peak        NR 1.0000000000
7372             Alu    37     TE_peak        NR 0.1205211726
7373             MIR   109     TE_peak ESR_close 0.7414965986
7374            ERVK   673     TE_peak EAR_close 0.6888433982
7375            ERVK   133     TE_peak EAR_close 0.9047619048
7376              L2    24     TE_peak        NR 0.1016949153
7377            <NA>    NA not_TE_peak  LR_close           NA
7378            <NA>    NA not_TE_peak        NR           NA
7379              L2   360     TE_peak        NR 0.7392197125
7380             MIR   191     TE_peak        NR 1.0000000000
7381             MIR    91     TE_peak        NR 1.0000000000
7382       ERVL-MaLR   112     TE_peak   LR_open 1.0000000000
7383     hAT-Charlie    67     TE_peak        NR 0.6907216495
7384             Alu    16     TE_peak        NR 0.0526315789
7385             MIR    75     TE_peak        NR 0.3640776699
7386             MIR   166     TE_peak        NR 1.0000000000
7387             MIR   189     TE_peak        NR 1.0000000000
7388              L2    74     TE_peak        NR 0.4431137725
7389             Alu    24     TE_peak ESR_close 0.0774193548
7390     hAT-Charlie   110     TE_peak ESR_close 1.0000000000
7391             Alu   112     TE_peak ESR_close 0.6627218935
7392       ERVL-MaLR   156     TE_peak ESR_close 0.7878787879
7393            <NA>    NA not_TE_peak        NR           NA
7394             MIR   198     TE_peak        NR 1.0000000000
7395             MIR    71     TE_peak        NR 1.0000000000
7396             MIR   156     TE_peak  LR_close 1.0000000000
7397             MIR    88     TE_peak        NR 0.9166666667
7398             MIR    69     TE_peak        NR 0.4156626506
7399             MIR   124     TE_peak        NR 0.6231155779
7400             MIR    56     TE_peak        NR 1.0000000000
7401            ERVL    74     TE_peak        NR 0.2483221477
7402             MIR     4     TE_peak   LR_open 0.0396039604
7403              L2   234     TE_peak   LR_open 0.4178571429
7404              L2   135     TE_peak ESR_close 0.6994818653
7405              L2   328     TE_peak  LR_close 0.3430962343
7406             MIR   107     TE_peak        NR 1.0000000000
7407              L2    91     TE_peak        NR 0.9784946237
7408            <NA>    NA not_TE_peak        NR           NA
7409            ERV1   250     TE_peak        NR 0.5567928731
7410            <NA>    NA not_TE_peak  LR_close           NA
7411   Simple_repeat    34     TE_peak        NR 1.0000000000
7412             MIR   169     TE_peak        NR 1.0000000000
7413              L2    78     TE_peak        NR 1.0000000000
7414              L2   114     TE_peak        NR 1.0000000000
7415             Alu   112     TE_peak        NR 0.6746987952
7416             Alu   134     TE_peak        NR 0.4000000000
7417            ERV1   339     TE_peak        NR 1.0000000000
7418             Alu   167     TE_peak        NR 1.0000000000
7419            ERV1    54     TE_peak        NR 0.1849315068
7420              L2    70     TE_peak        NR 0.6730769231
7421             MIR   115     TE_peak        NR 1.0000000000
7422   Simple_repeat    52     TE_peak        NR 1.0000000000
7423              L2    67     TE_peak        NR 0.3401015228
7424              L2    45     TE_peak        NR 1.0000000000
7425         Unknown   182     TE_peak        NR 1.0000000000
7426     hAT-Charlie   109     TE_peak        NR 0.5736842105
7427            ERV1   171     TE_peak        NR 0.4776536313
7428            ERVL   130     TE_peak   not_mrc 0.9090909091
7429            ERVL   163     TE_peak   not_mrc 1.0000000000
7430       ERVL-MaLR   256     TE_peak   not_mrc 0.5818181818
7431            <NA>    NA not_TE_peak   LR_open           NA
7432             MIR    39     TE_peak        NR 0.2582781457
7433             MIR    19     TE_peak        NR 0.1900000000
7434            <NA>    NA not_TE_peak   LR_open           NA
7435   Simple_repeat    21     TE_peak        NR 1.0000000000
7436             MIR     7     TE_peak        NR 0.0346534653
7437             MIR   135     TE_peak        NR 1.0000000000
7438             MIR    43     TE_peak        NR 0.1954545455
7439  Low_complexity    39     TE_peak        NR 1.0000000000
7440              L2   204     TE_peak        NR 0.7640449438
7441            ERV1   547     TE_peak        NR 0.8325722983
7442            ERV1    46     TE_peak        NR 0.0780984720
7443   Simple_repeat    37     TE_peak        NR 1.0000000000
7444             MIR    66     TE_peak        NR 1.0000000000
7445              L2   103     TE_peak        NR 1.0000000000
7446              L2    48     TE_peak ESR_close 0.1259842520
7447             MIR   209     TE_peak    ESR_OC 1.0000000000
7448            <NA>    NA not_TE_peak ESR_close           NA
7449             MIR   154     TE_peak        NR 1.0000000000
7450              L2    48     TE_peak        NR 1.0000000000
7451             MIR   156     TE_peak        NR 0.6117647059
7452            <NA>    NA not_TE_peak        NR           NA
7453     hAT-Charlie   302     TE_peak   LR_open 1.0000000000
7454            <NA>    NA not_TE_peak        NR           NA
7455            <NA>    NA not_TE_peak   LR_open           NA
7456            <NA>    NA not_TE_peak        NR           NA
7457            <NA>    NA not_TE_peak ESR_close           NA
7458              L2    77     TE_peak  ESR_open 0.3666666667
7459             MIR    97     TE_peak  ESR_open 1.0000000000
7460             MIR   168     TE_peak  ESR_open 1.0000000000
7461              L2    90     TE_peak  ESR_open 0.3180212014
7462              L2   484     TE_peak   LR_open 0.4440366972
7463   Simple_repeat    38     TE_peak        NR 1.0000000000
7464   Simple_repeat    36     TE_peak        NR 1.0000000000
7465   Simple_repeat    26     TE_peak        NR 1.0000000000
7466   Simple_repeat    19     TE_peak        NR 1.0000000000
7467       ERVL-MaLR    58     TE_peak        NR 0.0993150685
7468     hAT-Charlie    89     TE_peak  ESR_open 1.0000000000
7469     hAT-Charlie   107     TE_peak  ESR_open 1.0000000000
7470     hAT-Charlie   105     TE_peak  ESR_open 1.0000000000
7471     hAT-Charlie   114     TE_peak        NR 1.0000000000
7472             MIR    64     TE_peak        NR 1.0000000000
7473   Simple_repeat    57     TE_peak        NR 1.0000000000
7474            ERVL   351     TE_peak        NR 1.0000000000
7475       ERVL-MaLR   154     TE_peak        NR 0.2938931298
7476             MIR   185     TE_peak        NR 0.8685446009
7477              L2   100     TE_peak        NR 1.0000000000
7478             MIR   171     TE_peak        NR 1.0000000000
7479              L2    18     TE_peak        NR 0.0937500000
7480             MIR   104     TE_peak  LR_close 0.4561403509
7481              L2    78     TE_peak  LR_close 1.0000000000
7482             MIR   148     TE_peak  LR_close 1.0000000000
7483             MIR    39     TE_peak        NR 0.2020725389
7484            ERVL   447     TE_peak        NR 0.6431654676
7485            <NA>    NA not_TE_peak        NR           NA
7486              L2   288     TE_peak   LR_open 1.0000000000
7487              L2    51     TE_peak        NR 0.4951456311
7488            ERV1   116     TE_peak        NR 1.0000000000
7489             MIR   111     TE_peak        NR 1.0000000000
7490              L2   314     TE_peak   LR_open 0.9691358025
7491             MIR    81     TE_peak   LR_open 1.0000000000
7492             MIR   166     TE_peak   LR_open 0.9485714286
7493             CR1    27     TE_peak   LR_open 0.4285714286
7494             MIR    70     TE_peak EAR_close 0.2991452991
7495              L2    70     TE_peak EAR_close 1.0000000000
7496              L2     9     TE_peak        NR 0.0178571429
7497              L2   266     TE_peak        NR 1.0000000000
7498             MIR   128     TE_peak        NR 1.0000000000
7499              L2   106     TE_peak   LR_open 1.0000000000
7500              L2   124     TE_peak   LR_open 0.8794326241
7501              L2    93     TE_peak   LR_open 1.0000000000
7502             MIR    84     TE_peak   LR_open 1.0000000000
7503            ERVL   118     TE_peak  LR_close 0.2843373494
7504       TcMar-Tc2   180     TE_peak   LR_open 0.7468879668
7505              L2   146     TE_peak   LR_open 0.5140845070
7506             MIR    59     TE_peak   LR_open 0.2892156863
7507              L2   205     TE_peak   LR_open 0.8471074380
7508             MIR   106     TE_peak        NR 1.0000000000
7509       ERVL-MaLR   126     TE_peak        NR 1.0000000000
7510            ERVL   259     TE_peak ESR_close 0.5108481262
7511            ERVL    78     TE_peak        NR 0.2653061224
7512             MIR    95     TE_peak        NR 0.4502369668
7513             MIR   135     TE_peak EAR_close 0.5921052632
7514             MIR    37     TE_peak  ESR_open 0.1947368421
7515              L2     2     TE_peak        NR 0.0224719101
7516              L2   202     TE_peak   LR_open 1.0000000000
7517              L2   116     TE_peak   LR_open 0.5296803653
7518            ERVL    30     TE_peak   not_mrc 0.2479338843
7519            <NA>    NA not_TE_peak ESR_close           NA
7520       ERVL-MaLR   209     TE_peak        NR 1.0000000000
7521            ERVL   656     TE_peak   LR_open 0.1995133820
7522            ERVL   386     TE_peak        NR 0.9278846154
7523             MIR    79     TE_peak        NR 1.0000000000
7524             Alu    29     TE_peak        NR 0.0989761092
7525             Alu   164     TE_peak   LR_open 0.5597269625
7526            <NA>    NA not_TE_peak ESR_close           NA
7527     hAT-Charlie    45     TE_peak ESR_close 0.2406417112
7528     hAT-Charlie    93     TE_peak ESR_close 1.0000000000
7529             MIR    61     TE_peak ESR_close 0.3034825871
7530              L1   166     TE_peak        NR 0.0705782313
7531              L1   104     TE_peak        NR 1.0000000000
7532             Alu   177     TE_peak        NR 0.6254416961
7533            <NA>    NA not_TE_peak        NR           NA
7534              L2   284     TE_peak        NR 0.2851405622
7535   Simple_repeat    23     TE_peak   LR_open 1.0000000000
7536             LTR   118     TE_peak   LR_open 0.2994923858
7537             LTR   231     TE_peak  ESR_open 0.5862944162
7538              L1   181     TE_peak  ESR_open 1.0000000000
7539   Simple_repeat    25     TE_peak  ESR_open 1.0000000000
7540              L2    58     TE_peak        NR 0.2093862816
7541            ERVL    41     TE_peak        NR 0.1814159292
7542            ERVL   145     TE_peak        NR 1.0000000000
7543            ERVL     9     TE_peak        NR 0.0810810811
7544              L1   437     TE_peak  LR_close 0.3045296167
7545             MIR   227     TE_peak ESR_close 1.0000000000
7546              L2    85     TE_peak ESR_close 0.2961672474
7547            <NA>    NA not_TE_peak        NR           NA
7548            <NA>    NA not_TE_peak  LR_close           NA
7549             MIR   154     TE_peak   LR_open 1.0000000000
7550             MIR    30     TE_peak   LR_open 0.1250000000
7551              L1    34     TE_peak        NR 0.0928961749
7552             CR1   136     TE_peak        NR 1.0000000000
7553              L1   119     TE_peak EAR_close 0.7828947368
7554             MIR    29     TE_peak EAR_close 0.3118279570
7555            <NA>    NA not_TE_peak   LR_open           NA
7556            <NA>    NA not_TE_peak ESR_close           NA
7557             MIR   133     TE_peak   LR_open 1.0000000000
7558              L2   101     TE_peak   LR_open 1.0000000000
7559              L2    62     TE_peak   LR_open 1.0000000000
7560             MIR   211     TE_peak        NR 1.0000000000
7561   Simple_repeat    40     TE_peak        NR 1.0000000000
7562             MIR   141     TE_peak        NR 0.7500000000
7563             MIR   196     TE_peak        NR 1.0000000000
7564            LTR?   227     TE_peak        NR 0.5675000000
7565            <NA>    NA not_TE_peak        NR           NA
7566             MIR   179     TE_peak EAR_close 1.0000000000
7567             Alu    85     TE_peak   LR_open 0.3346456693
7568              L2    93     TE_peak   LR_open 0.2075892857
7569     hAT-Charlie    11     TE_peak   LR_open 0.0594594595
7570              L2   236     TE_peak EAR_close 1.0000000000
7571              L2    27     TE_peak   not_mrc 0.4218750000
7572            <NA>    NA not_TE_peak        NR           NA
7573            <NA>    NA not_TE_peak  LR_close           NA
7574             CR1   121     TE_peak        NR 1.0000000000
7575       ERVL-MaLR   176     TE_peak        NR 1.0000000000
7576              L1     5     TE_peak        NR 0.0819672131
7577             MIR    97     TE_peak   LR_open 0.4825870647
7578             MIR    32     TE_peak   LR_open 0.1916167665
7579             MIR    12     TE_peak        NR 0.0718562874
7580            <NA>    NA not_TE_peak        NR           NA
7581              L2    67     TE_peak   LR_open 1.0000000000
7582             MIR   133     TE_peak   LR_open 1.0000000000
7583            <NA>    NA not_TE_peak        NR           NA
7584         Unknown    52     TE_peak   LR_open 1.0000000000
7585             Alu    64     TE_peak   LR_open 0.2057877814
7586   Simple_repeat    53     TE_peak   LR_open 1.0000000000
7587             Alu   123     TE_peak   LR_open 1.0000000000
7588   Simple_repeat    16     TE_peak   LR_open 0.2191780822
7589             MIR   142     TE_peak        NR 1.0000000000
7590             MIR    61     TE_peak EAR_close 1.0000000000
7591             MIR   111     TE_peak EAR_close 0.4422310757
7592              L2     7     TE_peak        NR 0.1666666667
7593   Simple_repeat    29     TE_peak        NR 1.0000000000
7594   Simple_repeat    45     TE_peak        NR 1.0000000000
7595   Simple_repeat    29     TE_peak        NR 1.0000000000
7596              L2   242     TE_peak        NR 0.2160714286
7597   Simple_repeat    59     TE_peak  EAR_open 1.0000000000
7598  Low_complexity    71     TE_peak  EAR_open 1.0000000000
7599             MIR   162     TE_peak  EAR_open 1.0000000000
7600             MIR   192     TE_peak  EAR_open 1.0000000000
7601            <NA>    NA not_TE_peak  LR_close           NA
7602             Alu    58     TE_peak        NR 0.4427480916
7603   Simple_repeat    23     TE_peak        NR 1.0000000000
7604       ERVL-MaLR   118     TE_peak        NR 1.0000000000
7605              L2   226     TE_peak        NR 1.0000000000
7606       ERVL-MaLR   190     TE_peak   LR_open 0.3703703704
7607     hAT-Charlie   141     TE_peak   LR_open 1.0000000000
7608     hAT-Charlie   110     TE_peak   LR_open 1.0000000000
7609              L2   251     TE_peak   LR_open 0.1826783115
7610              L2    67     TE_peak   LR_open 1.0000000000
7611              L2   103     TE_peak   LR_open 1.0000000000
7612              L2   103     TE_peak   LR_open 0.5537634409
7613              L2   199     TE_peak   LR_open 0.9613526570
7614              L2   154     TE_peak   LR_open 1.0000000000
7615            <NA>    NA not_TE_peak        NR           NA
7616   Simple_repeat    41     TE_peak  ESR_open 1.0000000000
7617             MIR   118     TE_peak  LR_close 0.5989847716
7618            <NA>    NA not_TE_peak ESR_close           NA
7619              L2    56     TE_peak  EAR_open 0.1400000000
7620            ERVL    89     TE_peak  EAR_open 1.0000000000
7621              L2    79     TE_peak  ESR_open 0.6528925620
7622              L2   108     TE_peak  ESR_open 1.0000000000
7623   Simple_repeat    30     TE_peak  ESR_open 1.0000000000
7624             MIR   145     TE_peak  ESR_open 0.7631578947
7625   Simple_repeat    41     TE_peak   LR_open 1.0000000000
7626     hAT-Charlie    37     TE_peak        NR 0.8604651163
7627              L2    20     TE_peak        NR 0.1724137931
7628             MIR   179     TE_peak        NR 1.0000000000
7629            ERV1   314     TE_peak        NR 1.0000000000
7630       ERVL-MaLR    63     TE_peak        NR 1.0000000000
7631             MIR   127     TE_peak        NR 1.0000000000
7632     hAT-Charlie    90     TE_peak        NR 0.6081081081
7633             MIR   120     TE_peak        NR 1.0000000000
7634   Simple_repeat    28     TE_peak        NR 1.0000000000
7635   Simple_repeat    47     TE_peak        NR 1.0000000000
7636   Simple_repeat     6     TE_peak        NR 1.0000000000
7637   Simple_repeat    23     TE_peak        NR 1.0000000000
7638   Simple_repeat    51     TE_peak        NR 1.0000000000
7639             Alu    14     TE_peak        NR 0.1272727273
7640  Low_complexity    47     TE_peak        NR 1.0000000000
7641              L2   244     TE_peak EAR_close 1.0000000000
7642             CR1   111     TE_peak EAR_close 0.2428884026
7643             MIR    73     TE_peak        NR 0.4709677419
7644             MIR    16     TE_peak        NR 0.1012658228
7645             MIR    97     TE_peak   LR_open 0.7698412698
7646             MIR   210     TE_peak   LR_open 0.9333333333
7647              L2    73     TE_peak EAR_close 0.1437007874
7648             MIR    16     TE_peak  LR_close 0.2500000000
7649            <NA>    NA not_TE_peak ESR_close           NA
7650             MIR    41     TE_peak   LR_open 0.2500000000
7651            <NA>    NA not_TE_peak   LR_open           NA
7652             MIR    82     TE_peak   LR_open 1.0000000000
7653            ERV1    51     TE_peak   LR_open 0.1500000000
7654              L2    41     TE_peak        NR 0.2039800995
7655             MIR   177     TE_peak        NR 1.0000000000
7656             CR1   473     TE_peak        NR 0.9813278008
7657             MIR    10     TE_peak        NR 0.1369863014
7658             MIR   131     TE_peak   LR_open 0.6787564767
7659             MIR    75     TE_peak        NR 0.4335260116
7660              L1   338     TE_peak  EAR_open 1.0000000000
7661             MIR   213     TE_peak  EAR_open 1.0000000000
7662            ERV1   133     TE_peak        NR 0.2897603486
7663             MIR    82     TE_peak        NR 0.3293172691
7664       ERVL-MaLR   196     TE_peak        NR 0.4345898004
7665             MIR   197     TE_peak        NR 1.0000000000
7666              L2    59     TE_peak        NR 0.1425120773
7667            <NA>    NA not_TE_peak   not_mrc           NA
7668             MIR   215     TE_peak        NR 1.0000000000
7669     hAT-Charlie   109     TE_peak        NR 0.5291262136
7670             MIR   121     TE_peak   LR_open 1.0000000000
7671              L2    51     TE_peak   LR_open 1.0000000000
7672             MIR    19     TE_peak  LR_close 0.2923076923
7673             MIR    24     TE_peak        NR 0.2033898305
7674              L2    79     TE_peak        NR 1.0000000000
7675              L2    73     TE_peak        NR 1.0000000000
7676              L2    82     TE_peak        NR 0.7008547009
7677             MIR    57     TE_peak        NR 1.0000000000
7678              L2   795     TE_peak   LR_open 1.0000000000
7679             MIR    18     TE_peak   LR_open 0.1184210526
7680              L2   119     TE_peak        NR 0.7256097561
7681  Low_complexity    53     TE_peak  LR_close 1.0000000000
7682             MIR    54     TE_peak  LR_close 1.0000000000
7683              L2   328     TE_peak        NR 1.0000000000
7684             Alu     1     TE_peak        NR 0.0037037037
7685     hAT-Charlie    60     TE_peak        NR 0.4081632653
7686     hAT-Charlie   166     TE_peak        NR 1.0000000000
7687            <NA>    NA not_TE_peak        NR           NA
7688            <NA>    NA not_TE_peak   LR_open           NA
7689             MIR    63     TE_peak   LR_open 0.3368983957
7690              L2   131     TE_peak        NR 1.0000000000
7691              L2   444     TE_peak        NR 0.9173553719
7692             DNA   158     TE_peak   LR_open 1.0000000000
7693             MIR   171     TE_peak ESR_close 1.0000000000
7694             MIR   173     TE_peak ESR_close 0.9885714286
7695       ERVL-MaLR   325     TE_peak ESR_close 0.9969325153
7696            ERVL   339     TE_peak        NR 0.7004132231
7697             MIR   111     TE_peak        NR 0.7500000000
7698            <NA>    NA not_TE_peak        NR           NA
7699   Simple_repeat    26     TE_peak        NR 1.0000000000
7700             Alu    10     TE_peak        NR 0.0340136054
7701             MIR   232     TE_peak   LR_open 1.0000000000
7702              L2    28     TE_peak   LR_open 0.5833333333
7703       ERVL-MaLR   207     TE_peak   LR_open 0.5433070866
7704             CR1   253     TE_peak   LR_open 1.0000000000
7705              L1    25     TE_peak        NR 0.0841750842
7706       ERVL-MaLR   141     TE_peak        NR 1.0000000000
7707            ERVL    37     TE_peak        NR 1.0000000000
7708            ERVL   547     TE_peak        NR 1.0000000000
7709              L1   126     TE_peak        NR 0.5101214575
7710             MIR    45     TE_peak        NR 0.2528089888
7711             CR1    92     TE_peak        NR 0.9684210526
7712              L1    36     TE_peak        NR 0.7659574468
7713             MIR   150     TE_peak        NR 0.9202453988
7714             MIR   179     TE_peak        NR 1.0000000000
7715              L2    92     TE_peak        NR 0.2857142857
7716              L2   347     TE_peak        NR 0.5642276423
7717   Simple_repeat    47     TE_peak        NR 1.0000000000
7718              L2    26     TE_peak        NR 1.0000000000
7719       ERVL-MaLR     6     TE_peak        NR 0.0116279070
7720             MIR    35     TE_peak ESR_close 1.0000000000
7721            ERVL   261     TE_peak ESR_close 0.6525000000
7722             MIR    76     TE_peak        NR 1.0000000000
7723              L1   181     TE_peak        NR 1.0000000000
7724     hAT-Charlie   109     TE_peak        NR 0.5923913043
7725              L2   365     TE_peak        NR 0.8968058968
7726            <NA>    NA not_TE_peak        NR           NA
7727            ERV1    89     TE_peak        NR 0.2270408163
7728            ERV1   266     TE_peak        NR 1.0000000000
7729            ERV1   149     TE_peak        NR 0.6592920354
7730     hAT-Charlie   187     TE_peak  LR_close 1.0000000000
7731              L2    61     TE_peak  LR_close 0.4692307692
7732            <NA>    NA not_TE_peak  LR_close           NA
7733            <NA>    NA not_TE_peak   LR_open           NA
7734             MIR    75     TE_peak   not_mrc 0.4838709677
7735             Alu   254     TE_peak   LR_open 0.8220064725
7736              L2   178     TE_peak   LR_open 1.0000000000
7737            ERVL    91     TE_peak        NR 0.2131147541
7738              L1    37     TE_peak        NR 0.1968085106
7739              L1    10     TE_peak ESR_close 0.1428571429
7740              L1    94     TE_peak ESR_close 0.9494949495
7741             MIR   198     TE_peak   LR_open 0.7951807229
7742     hAT-Charlie    90     TE_peak   LR_open 1.0000000000
7743     hAT-Charlie   123     TE_peak        NR 0.9248120301
7744     hAT-Charlie    47     TE_peak        NR 1.0000000000
7745             MIR    96     TE_peak        NR 0.3555555556
7746            ERVL   361     TE_peak        NR 0.8574821853
7747              L2    74     TE_peak        NR 0.2700729927
7748             MIR    38     TE_peak        NR 0.2773722628
7749       ERVL-MaLR    43     TE_peak ESR_close 1.0000000000
7750       ERVL-MaLR   392     TE_peak ESR_close 1.0000000000
7751       ERVL-MaLR    71     TE_peak ESR_close 1.0000000000
7752             MIR    23     TE_peak   LR_open 0.1464968153
7753     hAT-Charlie   201     TE_peak        NR 1.0000000000
7754            ERVL   167     TE_peak        NR 1.0000000000
7755              L1   350     TE_peak        NR 0.8928571429
7756       ERVL-MaLR   301     TE_peak   LR_open 0.5948616601
7757             MIR    67     TE_peak EAR_close 0.5630252101
7758   Simple_repeat    70     TE_peak        NR 1.0000000000
7759            <NA>    NA not_TE_peak  LR_close           NA
7760             MIR    23     TE_peak        NR 0.1840000000
7761            ERV1    83     TE_peak        NR 1.0000000000
7762   Simple_repeat    44     TE_peak        NR 1.0000000000
7763              L2   206     TE_peak        NR 0.8442622951
7764             MIR   157     TE_peak   LR_open 1.0000000000
7765              L2   116     TE_peak   LR_open 1.0000000000
7766            <NA>    NA not_TE_peak   LR_open           NA
7767       ERVL-MaLR   406     TE_peak   LR_open 1.0000000000
7768             CR1    99     TE_peak ESR_close 0.9900000000
7769             CR1    75     TE_peak ESR_close 1.0000000000
7770             MIR    61     TE_peak ESR_close 0.5041322314
7771            <NA>    NA not_TE_peak ESR_close           NA
7772             MIR   133     TE_peak ESR_close 0.7112299465
7773     hAT-Charlie    21     TE_peak        NR 0.0704697987
7774              L2   221     TE_peak  LR_close 0.7269736842
7775             MIR   200     TE_peak  LR_close 1.0000000000
7776            ERVL    99     TE_peak        NR 0.2408759124
7777             MIR   137     TE_peak        NR 0.6850000000
7778             CR1    82     TE_peak ESR_close 1.0000000000
7779             CR1    40     TE_peak ESR_close 1.0000000000
7780             MIR    62     TE_peak ESR_close 0.4492753623
7781       ERVL-MaLR   135     TE_peak EAR_close 0.9926470588
7782       ERVL-MaLR    11     TE_peak EAR_close 0.0753424658
7783      hAT-Tip100   262     TE_peak  LR_close 0.8478964401
7784      hAT-Tip100   238     TE_peak  LR_close 1.0000000000
7785              L1   656     TE_peak  LR_close 0.6301633045
7786   Simple_repeat    43     TE_peak        NR 1.0000000000
7787   Simple_repeat    31     TE_peak        NR 1.0000000000
7788             CR1   137     TE_peak EAR_close 0.4202453988
7789             MIR    28     TE_peak  LR_close 0.1320754717
7790             MIR   178     TE_peak  LR_close 1.0000000000
7791   Simple_repeat    29     TE_peak  LR_close 1.0000000000
7792              L2    11     TE_peak        NR 0.0310734463
7793       ERVL-MaLR   290     TE_peak        NR 0.6682027650
7794              L2   217     TE_peak EAR_close 0.2244053775
7795              L2   127     TE_peak EAR_close 0.8819444444
7796             MIR   200     TE_peak        NR 0.8658008658
7797     hAT-Charlie   184     TE_peak        NR 1.0000000000
7798        tRNA-RTE    38     TE_peak        NR 0.4578313253
7799            ERV1   342     TE_peak        NR 0.7184873950
7800             MIR    21     TE_peak        NR 0.3230769231
7801   TcMar-Mariner    80     TE_peak        NR 1.0000000000
7802             MIR   232     TE_peak        NR 1.0000000000
7803             MIR   100     TE_peak        NR 1.0000000000
7804             Alu    64     TE_peak        NR 0.2133333333
7805              L2   219     TE_peak   LR_open 0.5116822430
7806       ERVL-MaLR   260     TE_peak  LR_close 0.6842105263
7807        RTE-BovB    82     TE_peak        NR 0.8118811881
7808     hAT-Charlie   110     TE_peak ESR_close 1.0000000000
7809              L2   125     TE_peak        NR 0.1554726368
7810            <NA>    NA not_TE_peak        NR           NA
7811              L2   133     TE_peak   LR_open 0.1555555556
7812      hAT-Tip100   169     TE_peak   LR_open 1.0000000000
7813             MIR    90     TE_peak   LR_open 1.0000000000
7814            <NA>    NA not_TE_peak        NR           NA
7815   Simple_repeat    10     TE_peak ESR_close 0.3030303030
7816   Simple_repeat    66     TE_peak        NR 1.0000000000
7817   Simple_repeat   103     TE_peak        NR 1.0000000000
7818   Simple_repeat    36     TE_peak        NR 1.0000000000
7819   Simple_repeat    63     TE_peak        NR 1.0000000000
7820             MIR   147     TE_peak        NR 1.0000000000
7821              L2    45     TE_peak        NR 0.1520270270
7822              L2   211     TE_peak        NR 0.6205882353
7823             MIR    82     TE_peak        NR 0.3644444444
7824             MIR   170     TE_peak   LR_open 1.0000000000
7825   Simple_repeat    38     TE_peak        NR 1.0000000000
7826              L1   166     TE_peak        NR 0.2938053097
7827             MIR   236     TE_peak        NR 1.0000000000
7828              L2    50     TE_peak  LR_close 0.3521126761
7829            <NA>    NA not_TE_peak        NR           NA
7830              L2   108     TE_peak   LR_open 1.0000000000
7831              L2   136     TE_peak   LR_open 0.9006622517
7832              L2   363     TE_peak        NR 0.4055865922
7833            <NA>    NA not_TE_peak   LR_open           NA
7834             CR1   258     TE_peak   LR_open 0.6339066339
7835             CR1    52     TE_peak  LR_close 0.1277641278
7836             MIR    69     TE_peak  LR_close 1.0000000000
7837             MIR    28     TE_peak  LR_close 0.1944444444
7838             MIR   110     TE_peak EAR_close 0.5418719212
7839             MIR   115     TE_peak        NR 1.0000000000
7840   Simple_repeat    31     TE_peak        NR 1.0000000000
7841             MIR    72     TE_peak ESR_close 1.0000000000
7842            <NA>    NA not_TE_peak   LR_open           NA
7843             MIR    90     TE_peak   LR_open 1.0000000000
7844              L2   149     TE_peak   LR_open 0.5359712230
7845       ERVL-MaLR    49     TE_peak        NR 0.1349862259
7846            ERVL    91     TE_peak        NR 1.0000000000
7847              L2   178     TE_peak        NR 0.4759358289
7848             MIR    81     TE_peak EAR_close 0.4009900990
7849              L2   114     TE_peak EAR_close 1.0000000000
7850             MIR   183     TE_peak        NR 1.0000000000
7851            <NA>    NA not_TE_peak EAR_close           NA
7852              L2    39     TE_peak EAR_close 0.2516129032
7853            <NA>    NA not_TE_peak   LR_open           NA
7854             Alu   142     TE_peak   LR_open 0.4863013699
7855             MIR   175     TE_peak   LR_open 0.9510869565
7856              L2   114     TE_peak   LR_open 1.0000000000
7857             MIR   123     TE_peak   not_mrc 0.7365269461
7858              L2    96     TE_peak   LR_open 1.0000000000
7859   Simple_repeat    34     TE_peak  LR_close 1.0000000000
7860       ERVL-MaLR   265     TE_peak        NR 0.6036446469
7861            <NA>    NA not_TE_peak        NR           NA
7862             MIR    52     TE_peak ESR_close 0.2342342342
7863             MIR   115     TE_peak ESR_close 1.0000000000
7864             MIR    77     TE_peak ESR_close 0.4967741935
7865   Simple_repeat    29     TE_peak        NR 1.0000000000
7866              L2   214     TE_peak  LR_close 0.7062706271
7867              L1   144     TE_peak  LR_close 0.1550053821
7868             MIR    12     TE_peak        NR 0.1363636364
7869          Gypsy?   230     TE_peak        NR 0.7823129252
7870       ERVL-MaLR   139     TE_peak        NR 0.4860139860
7871             MIR   196     TE_peak        NR 1.0000000000
7872             MIR   124     TE_peak        NR 1.0000000000
7873             Alu    56     TE_peak EAR_close 0.1794871795
7874              L2    71     TE_peak   LR_open 0.7395833333
7875     hAT-Charlie    39     TE_peak        NR 0.2671232877
7876            <NA>    NA not_TE_peak        NR           NA
7877             MIR   139     TE_peak        NR 0.8424242424
7878             MIR    47     TE_peak   LR_open 0.2034632035
7879             MIR   132     TE_peak   LR_open 1.0000000000
7880   Simple_repeat    39     TE_peak        NR 1.0000000000
7881    TcMar-Tigger    38     TE_peak   LR_open 0.2733812950
7882              L2   246     TE_peak   LR_open 1.0000000000
7883     hAT-Charlie    12     TE_peak   LR_open 0.0603015075
7884             MIR    30     TE_peak        NR 0.1986754967
7885             Alu    85     TE_peak   LR_open 0.4166666667
7886    TcMar-Tigger   298     TE_peak  LR_close 0.4845528455
7887            <NA>    NA not_TE_peak        NR           NA
7888             MIR   148     TE_peak EAR_close 1.0000000000
7889              L2    93     TE_peak        NR 1.0000000000
7890       ERVL-MaLR   253     TE_peak        NR 0.7529761905
7891            <NA>    NA not_TE_peak        NR           NA
7892            LTR?    51     TE_peak        NR 0.2217391304
7893            <NA>    NA not_TE_peak        NR           NA
7894              L2   410     TE_peak   LR_open 0.6925675676
7895             MIR   234     TE_peak   LR_open 0.9397590361
7896              L2   122     TE_peak        NR 0.6130653266
7897    TcMar-Tigger   145     TE_peak        NR 1.0000000000
7898      hAT-Tip100   103     TE_peak        NR 1.0000000000
7899              L2   159     TE_peak   not_mrc 1.0000000000
7900     hAT-Charlie    63     TE_peak        NR 0.4285714286
7901    TcMar-Tigger    41     TE_peak   LR_open 0.4226804124
7902    TcMar-Tigger   267     TE_peak   LR_open 1.0000000000
7903   Simple_repeat    21     TE_peak   LR_open 0.3888888889
7904              L2    86     TE_peak  ESR_open 1.0000000000
7905             MIR   208     TE_peak  ESR_open 1.0000000000
7906              L2   124     TE_peak        NR 0.9393939394
7907              L1   101     TE_peak        NR 0.1502976190
7908            <NA>    NA not_TE_peak        NR           NA
7909             MIR   140     TE_peak        NR 1.0000000000
7910             MIR   109     TE_peak        NR 0.8257575758
7911            <NA>    NA not_TE_peak  ESR_open           NA
7912            <NA>    NA not_TE_peak  EAR_open           NA
7913              L2   503     TE_peak   LR_open 1.0000000000
7914            <NA>    NA not_TE_peak        NR           NA
7915              L2    72     TE_peak ESR_close 1.0000000000
7916              L2   155     TE_peak ESR_close 1.0000000000
7917   Simple_repeat    32     TE_peak ESR_close 1.0000000000
7918            <NA>    NA not_TE_peak        NR           NA
7919             MIR   166     TE_peak        NR 1.0000000000
7920              L1   236     TE_peak   LR_open 0.2105263158
7921              L2   126     TE_peak   LR_open 1.0000000000
7922              L2   303     TE_peak   LR_open 1.0000000000
7923             MIR   194     TE_peak   LR_open 1.0000000000
7924              L2    57     TE_peak   LR_open 1.0000000000
7925             MIR    94     TE_peak        NR 0.4630541872
7926             MIR    74     TE_peak        NR 0.4404761905
7927             MIR   166     TE_peak        NR 1.0000000000
7928             Alu    62     TE_peak        NR 0.2137931034
7929             MIR    93     TE_peak   LR_open 1.0000000000
7930            <NA>    NA not_TE_peak        NR           NA
7931            <NA>    NA not_TE_peak        NR           NA
7932             Alu     4     TE_peak  LR_close 0.0128617363
7933   Simple_repeat    31     TE_peak  LR_close 1.0000000000
7934             MIR    23     TE_peak        NR 0.1729323308
7935              L1   519     TE_peak        NR 0.3998459168
7936     hAT-Charlie   230     TE_peak        NR 1.0000000000
7937       ERVL-MaLR   296     TE_peak        NR 1.0000000000
7938    TcMar-Tigger    60     TE_peak        NR 1.0000000000
7939            ERV1   396     TE_peak        NR 1.0000000000
7940             MIR    87     TE_peak        NR 0.5723684211
7941             MIR   200     TE_peak        NR 1.0000000000
7942             MIR    67     TE_peak        NR 0.4267515924
7943       ERVL-MaLR   249     TE_peak ESR_close 0.7155172414
7944            <NA>    NA not_TE_peak        NR           NA
7945              L1   136     TE_peak        NR 0.5171102662
7946     hAT-Charlie   133     TE_peak        NR 1.0000000000
7947              L2   222     TE_peak        NR 1.0000000000
7948              L2    91     TE_peak        NR 1.0000000000
7949            ERVK   664     TE_peak        NR 0.6497064579
7950            <NA>    NA not_TE_peak   LR_open           NA
7951              L2    67     TE_peak  LR_close 0.9710144928
7952            ERVK   538     TE_peak  LR_close 0.5729499468
7953   Simple_repeat    48     TE_peak        NR 1.0000000000
7954              L2    80     TE_peak        NR 1.0000000000
7955             MIR   146     TE_peak        NR 1.0000000000
7956              L1    66     TE_peak        NR 0.1116751269
7957    TcMar-Tigger   398     TE_peak        NR 0.5489655172
7958             MIR    75     TE_peak        NR 0.5859375000
7959            <NA>    NA not_TE_peak        NR           NA
7960             CR1    97     TE_peak        NR 0.4273127753
7961            <NA>    NA not_TE_peak EAR_close           NA
7962              L2   210     TE_peak  LR_close 0.4805491991
7963            <NA>    NA not_TE_peak        NR           NA
7964            <NA>    NA not_TE_peak        NR           NA
7965             MIR   119     TE_peak        NR 0.7777777778
7966             CR1   459     TE_peak   LR_open 0.6681222707
7967             MIR     9     TE_peak        NR 0.0396475771
7968     hAT-Charlie    82     TE_peak        NR 1.0000000000
7969     hAT-Charlie     9     TE_peak        NR 0.0833333333
7970            <NA>    NA not_TE_peak        NR           NA
7971              L2    87     TE_peak        NR 0.4306930693
7972           Gypsy   102     TE_peak        NR 1.0000000000
7973             MIR    57     TE_peak  LR_close 0.2651162791
7974            <NA>    NA not_TE_peak        NR           NA
7975             MIR   122     TE_peak        NR 0.5893719807
7976             MIR    69     TE_peak        NR 1.0000000000
7977   hAT-Blackjack     6     TE_peak        NR 0.0073710074
7978            <NA>    NA not_TE_peak  ESR_open           NA
7979             MIR   140     TE_peak        NR 1.0000000000
7980              L1   121     TE_peak  LR_close 0.3063291139
7981             Alu    45     TE_peak        NR 0.1510067114
7982             CR1    46     TE_peak        NR 1.0000000000
7983             MIR   116     TE_peak        NR 1.0000000000
7984             MIR    70     TE_peak        NR 0.5303030303
7985             MIR    73     TE_peak   LR_open 0.9012345679
7986     hAT-Charlie    68     TE_peak        NR 0.4822695035
7987             MIR    71     TE_peak        NR 0.4382716049
7988   hAT-Blackjack    63     TE_peak  LR_close 0.5833333333
7989             MIR   194     TE_peak  LR_close 1.0000000000
7990             MIR   183     TE_peak  LR_close 1.0000000000
7991            <NA>    NA not_TE_peak        NR           NA
7992   Simple_repeat    70     TE_peak ESR_close 1.0000000000
7993              L2   265     TE_peak   LR_open 0.9330985915
7994             DNA    16     TE_peak ESR_close 0.1415929204
7995             MIR   197     TE_peak        NR 1.0000000000
7996   Simple_repeat    47     TE_peak        NR 1.0000000000
7997            <NA>    NA not_TE_peak        NR           NA
7998     hAT-Charlie    55     TE_peak        NR 0.3038674033
7999              L2   129     TE_peak        NR 1.0000000000
8000              L2    29     TE_peak        NR 0.1374407583
8001              L2   321     TE_peak        NR 1.0000000000
8002            <NA>    NA not_TE_peak        NR           NA
8003            <NA>    NA not_TE_peak        NR           NA
8004             MIR   124     TE_peak        NR 1.0000000000
8005             MIR    95     TE_peak        NR 0.4112554113
8006              L2    72     TE_peak EAR_close 0.4137931034
8007             MIR    75     TE_peak        NR 1.0000000000
8008            <NA>    NA not_TE_peak        NR           NA
8009             MIR   234     TE_peak        NR 1.0000000000
8010            <NA>    NA not_TE_peak        NR           NA
8011              L2   111     TE_peak        NR 1.0000000000
8012            <NA>    NA not_TE_peak        NR           NA
8013             Alu   200     TE_peak ESR_close 0.7352941176
8014            <NA>    NA not_TE_peak        NR           NA
8015   Simple_repeat    50     TE_peak        NR 1.0000000000
8016  Low_complexity    33     TE_peak        NR 1.0000000000
8017            <NA>    NA not_TE_peak        NR           NA
8018   Simple_repeat    53     TE_peak        NR 1.0000000000
8019   Simple_repeat    41     TE_peak        NR 1.0000000000
8020             Alu   243     TE_peak        NR 0.8379310345
8021   Simple_repeat    24     TE_peak        NR 0.8000000000
8022   Simple_repeat    65     TE_peak  LR_close 1.0000000000
8023            <NA>    NA not_TE_peak        NR           NA
8024            <NA>    NA not_TE_peak        NR           NA
8025   Simple_repeat    70     TE_peak  ESR_open 0.6796116505
8026   Simple_repeat    51     TE_peak  ESR_open 1.0000000000
8027   Simple_repeat    48     TE_peak  ESR_open 1.0000000000
8028  Low_complexity    75     TE_peak  ESR_open 1.0000000000
8029   Simple_repeat    18     TE_peak  ESR_open 0.3214285714
8030   Simple_repeat    45     TE_peak        NR 1.0000000000
8031   Simple_repeat    63     TE_peak        NR 1.0000000000
8032            <NA>    NA not_TE_peak        NR           NA
8033              L2   149     TE_peak        NR 1.0000000000
8034            <NA>    NA not_TE_peak   LR_open           NA
8035            <NA>    NA not_TE_peak        NR           NA
8036             Alu    38     TE_peak        NR 0.1262458472
8037             MIR    37     TE_peak        NR 1.0000000000
8038     hAT-Charlie    89     TE_peak        NR 0.4917127072
8039            <NA>    NA not_TE_peak        NR           NA
8040            <NA>    NA not_TE_peak        NR           NA
8041            <NA>    NA not_TE_peak        NR           NA
8042  Low_complexity    61     TE_peak        NR 1.0000000000
8043            <NA>    NA not_TE_peak  LR_close           NA
8044            <NA>    NA not_TE_peak        NR           NA
8045            <NA>    NA not_TE_peak   LR_open           NA
8046             Alu   218     TE_peak EAR_close 0.7290969900
8047              L2    89     TE_peak EAR_close 1.0000000000
8048              L2    53     TE_peak EAR_close 0.1070707071
8049              L2   115     TE_peak   LR_open 0.2323232323
8050              L2    97     TE_peak   LR_open 1.0000000000
8051              L2   106     TE_peak        NR 1.0000000000
8052            <NA>    NA not_TE_peak        NR           NA
8053            <NA>    NA not_TE_peak  LR_close           NA
8054            <NA>    NA not_TE_peak        NR           NA
8055              L2    87     TE_peak        NR 0.2979452055
8056             hAT   283     TE_peak        NR 1.0000000000
8057              L2     4     TE_peak        NR 0.0145454545
8058              L2    82     TE_peak        NR 0.4315789474
8059            <NA>    NA not_TE_peak   not_mrc           NA
8060            <NA>    NA not_TE_peak        NR           NA
8061              L1   157     TE_peak        NR 0.7201834862
8062              L2   353     TE_peak  LR_close 0.9514824798
8063            <NA>    NA not_TE_peak   LR_open           NA
8064            <NA>    NA not_TE_peak        NR           NA
8065            <NA>    NA not_TE_peak        NR           NA
8066            <NA>    NA not_TE_peak        NR           NA
8067   Simple_repeat    36     TE_peak        NR 1.0000000000
8068   Simple_repeat    34     TE_peak        NR 1.0000000000
8069            ERVL   539     TE_peak        NR 1.0000000000
8070             MIR   145     TE_peak        NR 1.0000000000
8071    TcMar-Tigger    32     TE_peak        NR 0.1495327103
8072     hAT-Charlie   166     TE_peak   LR_open 1.0000000000
8073             MIR   124     TE_peak   LR_open 1.0000000000
8074       ERVL-MaLR   103     TE_peak  EAR_open 0.3002915452
8075             hAT   233     TE_peak  EAR_open 1.0000000000
8076              L1   514     TE_peak        NR 0.5365344468
8077              L2   382     TE_peak        NR 0.8842592593
8078   Simple_repeat   112     TE_peak        NR 1.0000000000
8079              L2   378     TE_peak   LR_open 0.8494382022
8080             Alu   284     TE_peak  ESR_open 1.0000000000
8081   Simple_repeat    55     TE_peak  ESR_open 1.0000000000
8082              L2   378     TE_peak  ESR_open 1.0000000000
8083       ERVL-MaLR    74     TE_peak  ESR_open 0.1557894737
8084              L2   101     TE_peak        NR 0.6778523490
8085            ERVL   387     TE_peak   not_mrc 0.2219036697
8086            <NA>    NA not_TE_peak        NR           NA
8087             MIR    26     TE_peak        NR 1.0000000000
8088       ERVL-MaLR    73     TE_peak        NR 1.0000000000
8089             Alu    30     TE_peak        NR 0.0996677741
8090             Alu   297     TE_peak        NR 0.9900000000
8091             Alu    62     TE_peak   LR_open 0.2026143791
8092             Alu   213     TE_peak   LR_open 0.8160919540
8093              L2    45     TE_peak        NR 1.0000000000
8094             MIR   101     TE_peak        NR 0.7537313433
8095   Simple_repeat    62     TE_peak        NR 1.0000000000
8096   Simple_repeat    41     TE_peak        NR 1.0000000000
8097              L2   140     TE_peak        NR 0.8433734940
8098             MIR   187     TE_peak        NR 0.8311111111
8099   Simple_repeat    40     TE_peak   LR_open 1.0000000000
8100            <NA>    NA not_TE_peak   LR_open           NA
8101              L2    54     TE_peak   LR_open 0.2713567839
8102              L2   314     TE_peak   LR_open 1.0000000000
8103             Alu   157     TE_peak   LR_open 1.0000000000
8104             Alu    51     TE_peak   LR_open 1.0000000000
8105           snRNA     1     TE_peak   LR_open 0.0096153846
8106       ERVL-MaLR   135     TE_peak   LR_open 1.0000000000
8107            ERV1   341     TE_peak   LR_open 0.7967289720
8108             Alu   221     TE_peak        NR 0.7620689655
8109              L2   217     TE_peak        NR 1.0000000000
8110             Alu    32     TE_peak  LR_close 0.1099656357
8111             Alu   198     TE_peak   LR_open 1.0000000000
8112              L2   213     TE_peak   LR_open 1.0000000000
8113              L1   183     TE_peak   LR_open 0.3420560748
8114            ERV1     9     TE_peak        NR 0.0337078652
8115              L2   111     TE_peak        NR 1.0000000000
8116            <NA>    NA not_TE_peak        NR           NA
8117   Simple_repeat    26     TE_peak        NR 1.0000000000
8118   Simple_repeat    36     TE_peak        NR 1.0000000000
8119            <NA>    NA not_TE_peak  LR_close           NA
8120             Alu   121     TE_peak   LR_open 0.4143835616
8121       ERVL-MaLR   208     TE_peak        NR 0.9244444444
8122             MIR   119     TE_peak        NR 1.0000000000
8123            <NA>    NA not_TE_peak   LR_open           NA
8124     hAT-Charlie   282     TE_peak        NR 1.0000000000
8125             Alu    40     TE_peak        NR 0.1384083045
8126             Alu   302     TE_peak   LR_open 1.0000000000
8127             Alu   236     TE_peak   LR_open 0.8000000000
8128             Alu   162     TE_peak        NR 1.0000000000
8129             Alu    93     TE_peak        NR 0.7322834646
8130             CR1   115     TE_peak        NR 0.4872881356
8131              L2   250     TE_peak        NR 1.0000000000
8132              L2   270     TE_peak        NR 0.8132530120
8133             Alu   149     TE_peak        NR 0.5137931034
8134            <NA>    NA not_TE_peak        NR           NA
8135             Alu   155     TE_peak        NR 1.0000000000
8136             Alu     2     TE_peak        NR 0.0065146580
8137             Alu   174     TE_peak        NR 1.0000000000
8138              L1    36     TE_peak        NR 0.6545454545
8139             MIR   189     TE_peak        NR 0.8552036199
8140             Alu    13     TE_peak   LR_open 0.0420711974
8141            <NA>    NA not_TE_peak        NR           NA
8142              L2   187     TE_peak        NR 1.0000000000
8143              L2   243     TE_peak  LR_close 1.0000000000
8144            <NA>    NA not_TE_peak   not_mrc           NA
8145            <NA>    NA not_TE_peak  LR_close           NA
8146            <NA>    NA not_TE_peak        NR           NA
8147     hAT-Charlie    64     TE_peak  LR_close 0.3615819209
8148              L2   136     TE_peak  LR_close 1.0000000000
8149   Simple_repeat    44     TE_peak ESR_close 1.0000000000
8150             MIR   190     TE_peak ESR_close 1.0000000000
8151  Low_complexity    46     TE_peak        NR 1.0000000000
8152            <NA>    NA not_TE_peak        NR           NA
8153            <NA>    NA not_TE_peak ESR_close           NA
8154              L2    40     TE_peak        NR 0.4545454545
8155            <NA>    NA not_TE_peak        NR           NA
8156            <NA>    NA not_TE_peak        NR           NA
8157             MIR   106     TE_peak   LR_open 0.5549738220
8158   hAT-Blackjack    22     TE_peak        NR 0.1437908497
8159            ERVL   240     TE_peak        NR 0.9756097561
8160            ERV1   509     TE_peak        NR 0.4810964083
8161       ERVL-MaLR   231     TE_peak   LR_open 0.4476744186
8162             Alu     9     TE_peak   LR_open 0.0298013245
8163             MIR    54     TE_peak        NR 0.5567010309
8164       ERVL-MaLR   345     TE_peak        NR 1.0000000000
8165     hAT-Charlie   304     TE_peak        NR 0.2199710564
8166             Alu   289     TE_peak        NR 0.9897260274
8167            <NA>    NA not_TE_peak ESR_close           NA
8168       ERVL-MaLR   195     TE_peak  LR_close 0.5145118734
8169             MIR   143     TE_peak  LR_close 1.0000000000
8170           RTE-X    61     TE_peak  LR_close 0.9384615385
8171      hAT-Tip100    97     TE_peak        NR 1.0000000000
8172             Alu    43     TE_peak        NR 0.1482758621
8173            <NA>    NA not_TE_peak        NR           NA
8174            <NA>    NA not_TE_peak        NR           NA
8175            <NA>    NA not_TE_peak  LR_close           NA
8176              L2   179     TE_peak        NR 0.6485507246
8177       ERVL-MaLR    29     TE_peak        NR 0.2589285714
8178            <NA>    NA not_TE_peak        NR           NA
8179       ERVL-MaLR   281     TE_peak   LR_open 1.0000000000
8180             Alu    58     TE_peak   LR_open 0.2929292929
8181             Alu    82     TE_peak        NR 0.2538699690
8182            ERVL   160     TE_peak        NR 0.7079646018
8183   Simple_repeat    84     TE_peak  ESR_open 1.0000000000
8184             MIR    43     TE_peak   LR_open 0.2097560976
8185   Simple_repeat    41     TE_peak   LR_open 1.0000000000
8186       ERVL-MaLR    14     TE_peak   LR_open 0.0965517241
8187              L2   105     TE_peak        NR 0.7094594595
8188              L1   239     TE_peak  ESR_open 0.6657381616
8189   Simple_repeat    62     TE_peak  ESR_open 1.0000000000
8190   Simple_repeat    49     TE_peak        NR 1.0000000000
8191   Simple_repeat    19     TE_peak        NR 0.1085714286
8192            ERV1   240     TE_peak        NR 0.3519061584
8193   Simple_repeat    21     TE_peak        NR 1.0000000000
8194              L2   248     TE_peak        NR 0.6666666667
8195              L2    58     TE_peak        NR 1.0000000000
8196              L2    62     TE_peak        NR 0.5904761905
8197              L2   671     TE_peak        NR 0.7912735849
8198            <NA>    NA not_TE_peak        NR           NA
8199             Alu   145     TE_peak        NR 0.5311355311
8200   Simple_repeat    26     TE_peak        NR 1.0000000000
8201             MIR   101     TE_peak        NR 0.7062937063
8202            ERV1   343     TE_peak        NR 0.7921478060
8203            <NA>    NA not_TE_peak ESR_close           NA
8204            <NA>    NA not_TE_peak        NR           NA
8205            <NA>    NA not_TE_peak  LR_close           NA
8206     hAT-Charlie   166     TE_peak  LR_close 1.0000000000
8207              L2    71     TE_peak   LR_open 1.0000000000
8208              L2    53     TE_peak   LR_open 1.0000000000
8209            <NA>    NA not_TE_peak ESR_close           NA
8210            <NA>    NA not_TE_peak  ESR_open           NA
8211   Simple_repeat    39     TE_peak   LR_open 0.7959183673
8212   Simple_repeat    25     TE_peak   LR_open 1.0000000000
8213            <NA>    NA not_TE_peak  ESR_open           NA
8214            <NA>    NA not_TE_peak        NR           NA
8215            <NA>    NA not_TE_peak        NR           NA
8216             Alu    58     TE_peak        NR 0.2006920415
8217             Alu   156     TE_peak        NR 1.0000000000
8218   Simple_repeat    42     TE_peak  LR_close 1.0000000000
8219   Simple_repeat    81     TE_peak        NR 1.0000000000
8220            <NA>    NA not_TE_peak        NR           NA
8221             Alu   126     TE_peak        NR 0.4329896907
8222   Simple_repeat    50     TE_peak        NR 1.0000000000
8223              L2    78     TE_peak        NR 1.0000000000
8224   Simple_repeat    22     TE_peak        NR 1.0000000000
8225       ERVL-MaLR   277     TE_peak        NR 0.6756097561
8226             Alu    66     TE_peak        NR 0.2894736842
8227   TcMar-Mariner    56     TE_peak        NR 1.0000000000
8228             MIR   239     TE_peak  EAR_open 1.0000000000
8229            LTR?    57     TE_peak  EAR_open 0.1748466258
8230            <NA>    NA not_TE_peak  EAR_open           NA
8231            <NA>    NA not_TE_peak   LR_open           NA
8232             MIR    22     TE_peak  EAR_open 0.0894308943
8233             MIR    51     TE_peak  EAR_open 1.0000000000
8234              L2   138     TE_peak  LR_close 1.0000000000
8235            <NA>    NA not_TE_peak        NR           NA
8236            <NA>    NA not_TE_peak        NR           NA
8237            <NA>    NA not_TE_peak        NR           NA
8238              L2   235     TE_peak   LR_open 0.7939189189
8239            <NA>    NA not_TE_peak  LR_close           NA
8240             Alu   205     TE_peak  EAR_open 0.7044673540
8241              L2    95     TE_peak  EAR_open 1.0000000000
8242             MIR    26     TE_peak  EAR_open 0.1300000000
8243             Alu    35     TE_peak        NR 0.2611940299
8244              L2   188     TE_peak        NR 1.0000000000
8245   Simple_repeat    37     TE_peak        NR 1.0000000000
8246        tRNA-RTE   106     TE_peak        NR 0.9137931034
8247             MIR    11     TE_peak   LR_open 0.0533980583
8248              L2    65     TE_peak   LR_open 0.4276315789
8249              L2    74     TE_peak   LR_open 0.6166666667
8250       ERVL-MaLR   366     TE_peak   LR_open 0.9631578947
8251              L1   183     TE_peak        NR 0.5430267062
8252             MIR    10     TE_peak        NR 0.0487804878
8253             Alu   304     TE_peak        NR 0.9559748428
8254             MIR   158     TE_peak   LR_open 1.0000000000
8255             MIR   232     TE_peak   LR_open 1.0000000000
8256             MIR   112     TE_peak EAR_close 0.7272727273
8257             MIR    63     TE_peak        NR 0.8873239437
8258             MIR   101     TE_peak        NR 1.0000000000
8259   Simple_repeat    26     TE_peak        NR 1.0000000000
8260   Simple_repeat    22     TE_peak        NR 1.0000000000
8261   Simple_repeat    19     TE_peak        NR 1.0000000000
8262             MIR   153     TE_peak        NR 0.8547486034
8263             Alu   167     TE_peak        NR 0.5091463415
8264            <NA>    NA not_TE_peak        NR           NA
8265              L2   145     TE_peak        NR 0.4302670623
8266             MIR   103     TE_peak        NR 1.0000000000
8267             MIR    89     TE_peak        NR 0.3973214286
8268            <NA>    NA not_TE_peak  LR_close           NA
8269            <NA>    NA not_TE_peak   LR_open           NA
8270              L2    52     TE_peak        NR 0.5473684211
8271            <NA>    NA not_TE_peak        NR           NA
8272             MIR   202     TE_peak        NR 1.0000000000
8273              L2    22     TE_peak        NR 0.3437500000
8274    TcMar-Tigger   622     TE_peak        NR 0.5056910569
8275            <NA>    NA not_TE_peak   not_mrc           NA
8276             MIR    21     TE_peak        NR 0.1544117647
8277              L2    10     TE_peak        NR 0.0900900901
8278              L1    76     TE_peak  LR_close 1.0000000000
8279             MIR   202     TE_peak  LR_close 1.0000000000
8280             MIR   115     TE_peak        NR 1.0000000000
8281             MIR   234     TE_peak        NR 1.0000000000
8282              L2    97     TE_peak        NR 1.0000000000
8283             MIR   196     TE_peak        NR 0.9607843137
8284   Simple_repeat    41     TE_peak        NR 1.0000000000
8285             MIR   236     TE_peak        NR 1.0000000000
8286              L2    37     TE_peak        NR 0.3303571429
8287             CR1   121     TE_peak        NR 0.4006622517
8288            <NA>    NA not_TE_peak        NR           NA
8289           RTE-X   434     TE_peak ESR_close 0.4977064220
8290       ERVL-MaLR   319     TE_peak  ESR_open 0.6470588235
8291             MIR    57     TE_peak  ESR_open 0.4071428571
8292             MIR   145     TE_peak        NR 0.9354838710
8293            <NA>    NA not_TE_peak        NR           NA
8294              L2     8     TE_peak        NR 0.0299625468
8295            <NA>    NA not_TE_peak        NR           NA
8296             MIR    73     TE_peak   LR_open 1.0000000000
8297              L2    46     TE_peak   LR_open 1.0000000000
8298             MIR    34     TE_peak   LR_open 1.0000000000
8299     hAT-Charlie   162     TE_peak   LR_open 1.0000000000
8300             MIR   152     TE_peak   LR_open 0.7069767442
8301            <NA>    NA not_TE_peak        NR           NA
8302             MIR    18     TE_peak   not_mrc 0.1525423729
8303    TcMar-Tigger   562     TE_peak   not_mrc 1.0000000000
8304             MIR     4     TE_peak   not_mrc 0.0400000000
8305             MIR    22     TE_peak        NR 0.1235955056
8306            <NA>    NA not_TE_peak  LR_close           NA
8307              L2    43     TE_peak   not_mrc 0.3981481481
8308            <NA>    NA not_TE_peak        NR           NA
8309              L2   113     TE_peak        NR 0.4109090909
8310            <NA>    NA not_TE_peak        NR           NA
8311            <NA>    NA not_TE_peak        NR           NA
8312              L2   223     TE_peak        NR 1.0000000000
8313   Simple_repeat    38     TE_peak        NR 1.0000000000
8314              L2   369     TE_peak        NR 0.7623966942
8315            <NA>    NA not_TE_peak   LR_open           NA
8316            <NA>    NA not_TE_peak  LR_close           NA
8317             MIR    45     TE_peak        NR 0.7142857143
8318             MIR    70     TE_peak        NR 1.0000000000
8319             MIR    76     TE_peak        NR 1.0000000000
8320     hAT-Charlie   169     TE_peak        NR 1.0000000000
8321             MIR    29     TE_peak        NR 0.9666666667
8322       ERVL-MaLR   376     TE_peak        NR 0.8973747017
8323             CR1   109     TE_peak   LR_open 1.0000000000
8324              L1   231     TE_peak   LR_open 0.3377192982
8325             MIR    51     TE_peak        NR 0.2786885246
8326        RTE-BovB    52     TE_peak        NR 0.5000000000
8327            <NA>    NA not_TE_peak ESR_close           NA
8328            DNA?   102     TE_peak   LR_open 0.9444444444
8329             MIR    20     TE_peak        NR 0.1212121212
8330             MIR    49     TE_peak        NR 0.3602941176
8331             MIR   139     TE_peak        NR 0.9084967320
8332            <NA>    NA not_TE_peak        NR           NA
8333              L2    31     TE_peak        NR 0.4558823529
8334            ERV1   220     TE_peak        NR 0.3859649123
8335            ERVL   233     TE_peak        NR 0.6657142857
8336             MIR    17     TE_peak   LR_open 0.2463768116
8337            ERVL   368     TE_peak        NR 0.8141592920
8338            <NA>    NA not_TE_peak        NR           NA
8339            <NA>    NA not_TE_peak  LR_close           NA
8340             MIR   109     TE_peak        NR 1.0000000000
8341             MIR   177     TE_peak   LR_open 1.0000000000
8342              L2    10     TE_peak   LR_open 0.0362318841
8343             MIR    99     TE_peak        NR 1.0000000000
8344             Alu   302     TE_peak   LR_open 0.9587301587
8345             MIR   158     TE_peak   LR_open 1.0000000000
8346              L1    37     TE_peak        NR 0.7708333333
8347              L2   256     TE_peak   LR_open 1.0000000000
8348            <NA>    NA not_TE_peak        NR           NA
8349             hAT   151     TE_peak EAR_close 1.0000000000
8350             Alu   125     TE_peak EAR_close 1.0000000000
8351             Alu   229     TE_peak EAR_close 0.7363344051
8352             MIR    37     TE_peak        NR 0.1601731602
8353            <NA>    NA not_TE_peak   LR_open           NA
8354    TcMar-Tigger   316     TE_peak  ESR_open 0.5755919854
8355       ERVL-MaLR    12     TE_peak        NR 0.0930232558
8356            ERVL   235     TE_peak        NR 0.6973293769
8357              L2   100     TE_peak    ESR_OC 1.0000000000
8358              L2   234     TE_peak    ESR_OC 1.0000000000
8359              L2    83     TE_peak        NR 0.4742857143
8360             CR1   291     TE_peak        NR 0.5243243243
8361             MIR   218     TE_peak  LR_close 0.9045643154
8362       ERVL-MaLR   421     TE_peak        NR 0.7296360485
8363       ERVL-MaLR   107     TE_peak   LR_open 1.0000000000
8364            ERVL   204     TE_peak   LR_open 0.8429752066
8365             Alu   135     TE_peak        NR 0.7714285714
8366              L2   137     TE_peak   not_mrc 0.6313364055
8367       ERVL-MaLR   462     TE_peak        NR 0.8369565217
8368            ERVL    98     TE_peak   LR_open 0.2882352941
8369       ERVL-MaLR   278     TE_peak   LR_open 1.0000000000
8370      hAT-Tip100    80     TE_peak   LR_open 0.8163265306
8371             Alu   152     TE_peak        NR 0.4856230032
8372             MIR   103     TE_peak  LR_close 1.0000000000
8373  Low_complexity     8     TE_peak ESR_close 0.2424242424
8374              L2    11     TE_peak ESR_close 0.0322580645
8375              L2   162     TE_peak   LR_open 1.0000000000
8376              L2    96     TE_peak   LR_open 1.0000000000
8377   Simple_repeat   713     TE_peak  ESR_open 1.0000000000
8378             MIR    54     TE_peak        NR 1.0000000000
8379   Simple_repeat    59     TE_peak        NR 1.0000000000
8380   Simple_repeat    41     TE_peak        NR 1.0000000000
8381              L2    60     TE_peak        NR 0.3571428571
8382             Alu    88     TE_peak  LR_close 0.2784810127
8383            ERV1   187     TE_peak  LR_close 0.4250000000
8384             MIR    15     TE_peak        NR 0.0724637681
8385   Simple_repeat    40     TE_peak        NR 1.0000000000
8386        RTE-BovB   207     TE_peak ESR_close 0.7089041096
8387            <NA>    NA not_TE_peak        NR           NA
8388            <NA>    NA not_TE_peak        NR           NA
8389   Simple_repeat    72     TE_peak        NR 1.0000000000
8390   Simple_repeat    29     TE_peak        NR 1.0000000000
8391              L2    63     TE_peak        NR 1.0000000000
8392             MIR    84     TE_peak        NR 1.0000000000
8393             MIR   193     TE_peak        NR 1.0000000000
8394             CR1    33     TE_peak  ESR_open 0.1130136986
8395     hAT-Charlie    10     TE_peak        NR 0.0543478261
8396            ERVL   706     TE_peak        NR 0.8588807786
8397              L2   120     TE_peak        NR 1.0000000000
8398              L2   192     TE_peak        NR 1.0000000000
8399             Alu   126     TE_peak        NR 0.4077669903
8400            <NA>    NA not_TE_peak  LR_close           NA
8401            <NA>    NA not_TE_peak EAR_close           NA
8402            <NA>    NA not_TE_peak EAR_close           NA
8403            <NA>    NA not_TE_peak        NR           NA
8404             CR1    72     TE_peak   LR_open 1.0000000000
8405             MIR   169     TE_peak ESR_close 1.0000000000
8406              L2   174     TE_peak ESR_close 1.0000000000
8407              L2    53     TE_peak ESR_close 1.0000000000
8408            <NA>    NA not_TE_peak EAR_close           NA
8409        tRNA-RTE   103     TE_peak   LR_open 0.8110236220
8410             MIR   192     TE_peak   LR_open 1.0000000000
8411              L2    86     TE_peak        NR 1.0000000000
8412            ERVL   203     TE_peak        NR 0.4903381643
8413            <NA>    NA not_TE_peak        NR           NA
8414            <NA>    NA not_TE_peak        NR           NA
8415             MIR   135     TE_peak        NR 0.9121621622
8416             Alu    98     TE_peak ESR_close 0.3344709898
8417            <NA>    NA not_TE_peak        NR           NA
8418            ERVL    42     TE_peak  LR_close 0.2295081967
8419       ERVL-MaLR   290     TE_peak  LR_close 0.7474226804
8420            <NA>    NA not_TE_peak        NR           NA
8421  Low_complexity    46     TE_peak        NR 1.0000000000
8422   Simple_repeat    36     TE_peak        NR 1.0000000000
8423   Simple_repeat    87     TE_peak        NR 1.0000000000
8424             MIR    64     TE_peak        NR 1.0000000000
8425              L1    32     TE_peak        NR 0.2406015038
8426       ERVL-MaLR   380     TE_peak        NR 1.0000000000
8427              L1   163     TE_peak        NR 0.5191082803
8428              L2    33     TE_peak        NR 0.1793478261
8429       ERVL-MaLR    88     TE_peak        NR 1.0000000000
8430       ERVL-MaLR    61     TE_peak        NR 1.0000000000
8431              L2    61     TE_peak        NR 0.3351648352
8432    TcMar-Tigger   337     TE_peak        NR 0.3243503369
8433             Alu   275     TE_peak   LR_open 0.9046052632
8434              L1   115     TE_peak  LR_close 1.0000000000
8435            <NA>    NA not_TE_peak   LR_open           NA
8436              L2    56     TE_peak        NR 0.7272727273
8437            <NA>    NA not_TE_peak ESR_close           NA
8438            <NA>    NA not_TE_peak   LR_open           NA
8439    TcMar-Tigger    11     TE_peak        NR 0.0341614907
8440      hAT-Tip100   174     TE_peak        NR 1.0000000000
8441              L2   254     TE_peak        NR 0.6004728132
8442             MIR   224     TE_peak   LR_open 0.9572649573
8443             MIR    76     TE_peak   LR_open 1.0000000000
8444            <NA>    NA not_TE_peak   LR_open           NA
8445              L2   175     TE_peak        NR 0.3125000000
8446              L1   118     TE_peak   LR_open 0.1771771772
8447             MIR   155     TE_peak        NR 0.6798245614
8448             MIR    75     TE_peak   LR_open 0.5357142857
8449     hAT-Charlie   109     TE_peak   LR_open 0.3562091503
8450              L2   267     TE_peak   LR_open 0.8165137615
8451   Simple_repeat    73     TE_peak        NR 1.0000000000
8452            <NA>    NA not_TE_peak   LR_open           NA
8453            <NA>    NA not_TE_peak   LR_open           NA
8454   Simple_repeat    36     TE_peak        NR 0.1469387755
8455   Simple_repeat    28     TE_peak   LR_open 0.4000000000
8456             MIR   229     TE_peak   LR_open 1.0000000000
8457   Simple_repeat    22     TE_peak   LR_open 1.0000000000
8458   Simple_repeat    21     TE_peak   LR_open 1.0000000000
8459            ERVL   289     TE_peak        NR 0.6109936575
8460            ERVL   278     TE_peak ESR_close 0.5902335456
8461              L2   101     TE_peak ESR_close 0.2797783934
8462             MIR    55     TE_peak   LR_open 0.2500000000
8463       ERVL-MaLR    18     TE_peak   LR_open 0.1800000000
8464   Simple_repeat    23     TE_peak  EAR_open 0.7931034483
8465   Simple_repeat    56     TE_peak  EAR_open 1.0000000000
8466   Simple_repeat    27     TE_peak  EAR_open 1.0000000000
8467   Simple_repeat    32     TE_peak  EAR_open 1.0000000000
8468   Simple_repeat    41     TE_peak  EAR_open 1.0000000000
8469   Simple_repeat    20     TE_peak  ESR_open 1.0000000000
8470   Simple_repeat    35     TE_peak  ESR_open 1.0000000000
8471              L2   182     TE_peak        NR 0.2782874618
8472              L2   135     TE_peak        NR 1.0000000000
8473              L2   112     TE_peak        NR 1.0000000000
8474             Alu   299     TE_peak        NR 1.0000000000
8475     hAT-Charlie   107     TE_peak        NR 1.0000000000
8476              L2    35     TE_peak   LR_open 0.3271028037
8477             CR1   121     TE_peak   LR_open 1.0000000000
8478             CR1    62     TE_peak   LR_open 1.0000000000
8479             Alu    46     TE_peak        NR 0.1559322034
8480             Alu   181     TE_peak        NR 1.0000000000
8481             MIR    31     TE_peak   LR_open 0.3522727273
8482            ERVK   426     TE_peak        NR 0.4405377456
8483            <NA>    NA not_TE_peak   LR_open           NA
8484   Simple_repeat    27     TE_peak        NR 1.0000000000
8485  Low_complexity    43     TE_peak        NR 1.0000000000
8486   Simple_repeat    37     TE_peak        NR 1.0000000000
8487            <NA>    NA not_TE_peak        NR           NA
8488            <NA>    NA not_TE_peak   LR_open           NA
8489             Alu    64     TE_peak        NR 0.2269503546
8490             Alu   282     TE_peak        NR 1.0000000000
8491            <NA>    NA not_TE_peak   LR_open           NA
8492             MIR    47     TE_peak   LR_open 0.2640449438
8493            ERVL   216     TE_peak   LR_open 1.0000000000
8494             Alu   279     TE_peak   LR_open 0.8857142857
8495             CR1    51     TE_peak        NR 1.0000000000
8496   Simple_repeat    88     TE_peak  EAR_open 1.0000000000
8497              L2   473     TE_peak  EAR_open 1.0000000000
8498              L2    99     TE_peak  EAR_open 1.0000000000
8499            <NA>    NA not_TE_peak   LR_open           NA
8500              L2   123     TE_peak        NR 0.8913043478
8501            <NA>    NA not_TE_peak        NR           NA
8502            ERV1   374     TE_peak  EAR_open 0.6690518784
8503              L1   133     TE_peak  EAR_open 1.0000000000
8504             MIR   192     TE_peak  EAR_open 1.0000000000
8505   Simple_repeat    52     TE_peak  EAR_open 1.0000000000
8506              L2    67     TE_peak  EAR_open 0.4589041096
8507            <NA>    NA not_TE_peak        NR           NA
8508       ERVL-MaLR   237     TE_peak  LR_close 0.7719869707
8509       ERVL-MaLR   367     TE_peak  LR_close 0.9267676768
8510       ERVL-MaLR   106     TE_peak        NR 0.3002832861
8511   Simple_repeat    88     TE_peak        NR 1.0000000000
8512   Simple_repeat    24     TE_peak        NR 1.0000000000
8513  Low_complexity    62     TE_peak        NR 1.0000000000
8514              L2   228     TE_peak        NR 0.6666666667
8515             MIR   168     TE_peak   LR_open 0.9940828402
8516             MIR    99     TE_peak        NR 1.0000000000
8517             Alu    86     TE_peak        NR 0.2885906040
8518            <NA>    NA not_TE_peak  LR_close           NA
8519        tRNA-RTE   171     TE_peak   LR_open 1.0000000000
8520              L2   381     TE_peak        NR 0.7243346008
8521            <NA>    NA not_TE_peak   LR_open           NA
8522  Low_complexity    42     TE_peak        NR 1.0000000000
8523              L2   165     TE_peak   LR_open 0.5092592593
8524              L2   234     TE_peak   LR_open 0.2843256379
8525            <NA>    NA not_TE_peak        NR           NA
8526              L2   120     TE_peak        NR 0.6703910615
8527              L2   191     TE_peak        NR 1.0000000000
8528            <NA>    NA not_TE_peak   LR_open           NA
8529            <NA>    NA not_TE_peak        NR           NA
8530            ERVL     6     TE_peak        NR 0.0377358491
8531            ERVL   332     TE_peak        NR 1.0000000000
8532              L2    50     TE_peak        NR 0.1091703057
8533              L1   407     TE_peak EAR_close 0.0659643436
8534            <NA>    NA not_TE_peak        NR           NA
8535            <NA>    NA not_TE_peak        NR           NA
8536            <NA>    NA not_TE_peak        NR           NA
8537              L1   830     TE_peak  LR_close 0.1974310181
8538            <NA>    NA not_TE_peak   LR_open           NA
8539            ERV1   464     TE_peak        NR 1.0000000000
8540   Simple_repeat    35     TE_peak        NR 1.0000000000
8541            <NA>    NA not_TE_peak        NR           NA
8542              L2   146     TE_peak  LR_close 0.8957055215
8543            <NA>    NA not_TE_peak        NR           NA
8544            ERVL   200     TE_peak  LR_close 0.9708737864
8545            ERVL    56     TE_peak        NR 0.1447028424
8546            ERVL   109     TE_peak        NR 0.3838028169
8547             MIR   208     TE_peak   LR_open 1.0000000000
8548             Alu    11     TE_peak   not_mrc 0.0371621622
8549              L1    96     TE_peak   not_mrc 1.0000000000
8550       ERVL-MaLR   436     TE_peak   not_mrc 0.8059149723
8551            ERVL   404     TE_peak        NR 0.2337962963
8552             MIR   156     TE_peak   LR_open 1.0000000000
8553      hAT-Tip100   102     TE_peak   LR_open 1.0000000000
8554       ERVL-MaLR    95     TE_peak   LR_open 0.2289156627
8555            <NA>    NA not_TE_peak        NR           NA
8556             Alu   118     TE_peak        NR 1.0000000000
8557   Simple_repeat    26     TE_peak EAR_close 1.0000000000
8558        RTE-BovB   154     TE_peak        NR 1.0000000000
8559              L2   322     TE_peak        NR 1.0000000000
8560             MIR   165     TE_peak        NR 0.8418367347
8561              L2   161     TE_peak        NR 0.7385321101
8562             MIR   163     TE_peak        NR 1.0000000000
8563            <NA>    NA not_TE_peak   LR_open           NA
8564            <NA>    NA not_TE_peak        NR           NA
8565            <NA>    NA not_TE_peak        NR           NA
8566            ERVL   176     TE_peak EAR_close 1.0000000000
8567            ERVL    40     TE_peak EAR_close 0.1801801802
8568            <NA>    NA not_TE_peak   LR_open           NA
8569            <NA>    NA not_TE_peak        NR           NA
8570              L2   310     TE_peak  LR_close 0.9144542773
8571              L2   131     TE_peak EAR_close 0.3218673219
8572             MIR     6     TE_peak        NR 0.0301507538
8573   Simple_repeat    28     TE_peak        NR 1.0000000000
8574             MIR    58     TE_peak  ESR_open 0.7733333333
8575             MIR   124     TE_peak  ESR_open 1.0000000000
8576              L2    41     TE_peak  ESR_open 0.3942307692
8577            <NA>    NA not_TE_peak        NR           NA
8578              L2    38     TE_peak  LR_close 0.2435897436
8579              L2    22     TE_peak  LR_close 0.3235294118
8580             MIR   127     TE_peak  ESR_open 1.0000000000
8581             MIR    88     TE_peak  ESR_open 1.0000000000
8582              L2    74     TE_peak  ESR_open 1.0000000000
8583             MIR    53     TE_peak  ESR_open 0.2366071429
8584     hAT-Charlie     4     TE_peak   LR_open 0.0256410256
8585             MIR   143     TE_peak        NR 1.0000000000
8586              L2    92     TE_peak        NR 1.0000000000
8587             MIR   166     TE_peak        NR 0.7033898305
8588              L2    17     TE_peak   LR_open 0.4146341463
8589            <NA>    NA not_TE_peak        NR           NA
8590            <NA>    NA not_TE_peak  LR_close           NA
8591             DNA    61     TE_peak        NR 0.3836477987
8592             MIR   124     TE_peak   LR_open 0.4979919679
8593             MIR    87     TE_peak   LR_open 1.0000000000
8594              L2   370     TE_peak  LR_close 0.2790346908
8595             MIR    87     TE_peak   LR_open 1.0000000000
8596     hAT-Charlie    44     TE_peak   LR_open 1.0000000000
8597     hAT-Charlie   208     TE_peak   LR_open 0.1938490214
8598              L2    75     TE_peak        NR 1.0000000000
8599       ERVL-MaLR   329     TE_peak        NR 0.7528604119
8600             MIR   195     TE_peak        NR 1.0000000000
8601       ERVL-MaLR    32     TE_peak        NR 0.1361702128
8602              L1    94     TE_peak  ESR_open 0.2946708464
8603              L2    99     TE_peak   LR_open 1.0000000000
8604              L2   133     TE_peak   LR_open 1.0000000000
8605            <NA>    NA not_TE_peak        NR           NA
8606            <NA>    NA not_TE_peak   LR_open           NA
8607       ERVL-MaLR   269     TE_peak        NR 0.7430939227
8608       ERVL-MaLR   176     TE_peak        NR 1.0000000000
8609   Simple_repeat    31     TE_peak        NR 0.8378378378
8610      hAT-Tip100   169     TE_peak        NR 1.0000000000
8611             Alu    44     TE_peak        NR 0.3165467626
8612            ERV1   325     TE_peak        NR 0.4032258065
8613            ERV1   323     TE_peak   LR_open 0.4007444169
8614             Alu    30     TE_peak   LR_open 1.0000000000
8615     hAT-Charlie    42     TE_peak   LR_open 0.2837837838
8616            ERVL   501     TE_peak   LR_open 0.3675715334
8617   Simple_repeat    28     TE_peak        NR 1.0000000000
8618  Low_complexity    41     TE_peak        NR 1.0000000000
8619             MIR   181     TE_peak        NR 1.0000000000
8620              L2    50     TE_peak        NR 0.4761904762
8621    TcMar-Tigger   360     TE_peak   LR_open 0.4705882353
8622             MIR   135     TE_peak   LR_open 1.0000000000
8623             MIR    58     TE_peak        NR 1.0000000000
8624             MIR   182     TE_peak        NR 1.0000000000
8625             MIR    40     TE_peak  ESR_open 0.7017543860
8626            <NA>    NA not_TE_peak        NR           NA
8627       ERVL-MaLR   254     TE_peak        NR 0.5415778252
8628             MIR   179     TE_peak   LR_open 1.0000000000
8629             MIR    98     TE_peak   LR_open 1.0000000000
8630             MIR    68     TE_peak   LR_open 0.5862068966
8631             MIR    66     TE_peak   LR_open 0.2946428571
8632   Simple_repeat    42     TE_peak   LR_open 1.0000000000
8633       ERVL-MaLR   194     TE_peak   LR_open 0.4743276284
8634     hAT-Charlie    89     TE_peak   LR_open 0.2348284960
8635            <NA>    NA not_TE_peak   LR_open           NA
8636             MIR   122     TE_peak   LR_open 1.0000000000
8637            <NA>    NA not_TE_peak        NR           NA
8638   Simple_repeat    14     TE_peak   LR_open 0.3500000000
8639              L2    73     TE_peak   LR_open 1.0000000000
8640             Alu    37     TE_peak        NR 0.1250000000
8641              L2   468     TE_peak  LR_close 0.8181818182
8642              L1    28     TE_peak  ESR_open 0.1284403670
8643            ERVL   199     TE_peak  ESR_open 1.0000000000
8644            ERVL   266     TE_peak  ESR_open 1.0000000000
8645              L1   137     TE_peak  ESR_open 0.2952586207
8646             MIR    19     TE_peak EAR_close 0.1301369863
8647     hAT-Charlie    91     TE_peak EAR_close 0.2926045016
8648             MIR   111     TE_peak EAR_close 1.0000000000
8649             Alu   157     TE_peak        NR 0.5198675497
8650  Low_complexity    59     TE_peak        NR 1.0000000000
8651   Simple_repeat    48     TE_peak        NR 1.0000000000
8652             MIR    97     TE_peak        NR 1.0000000000
8653   Simple_repeat    36     TE_peak        NR 1.0000000000
8654            <NA>    NA not_TE_peak        NR           NA
8655             Alu   309     TE_peak   LR_open 1.0000000000
8656    TcMar-Tigger    87     TE_peak   LR_open 0.6397058824
8657             Alu    38     TE_peak        NR 0.1809523810
8658             Alu   188     TE_peak        NR 1.0000000000
8659             MIR    84     TE_peak        NR 0.4444444444
8660             MIR   100     TE_peak        NR 1.0000000000
8661            <NA>    NA not_TE_peak        NR           NA
8662            ERV1   103     TE_peak   LR_open 0.6959459459
8663            ERV1   113     TE_peak   LR_open 0.0669431280
8664            <NA>    NA not_TE_peak        NR           NA
8665              L2   259     TE_peak        NR 0.6888297872
8666              L2    26     TE_peak        NR 1.0000000000
8667             MIR    49     TE_peak        NR 1.0000000000
8668   Simple_repeat    71     TE_peak        NR 1.0000000000
8669   Simple_repeat    65     TE_peak        NR 1.0000000000
8670            ERV1   321     TE_peak        NR 0.6056603774
8671             MIR    64     TE_peak   LR_open 1.0000000000
8672              L1   147     TE_peak   LR_open 1.0000000000
8673              L1    28     TE_peak   LR_open 0.1222707424
8674              L2   111     TE_peak        NR 1.0000000000
8675            <NA>    NA not_TE_peak  LR_close           NA
8676              L2   752     TE_peak   LR_open 0.7932489451
8677            ERV1   480     TE_peak   LR_open 1.0000000000
8678              L2   270     TE_peak   LR_open 0.2641878669
8679             MIR    49     TE_peak  EAR_open 0.2784090909
8680    TcMar-Tigger    30     TE_peak  EAR_open 0.0952380952
8681     hAT-Charlie    48     TE_peak        NR 0.4660194175
8682             MIR   152     TE_peak        NR 1.0000000000
8683   Simple_repeat    17     TE_peak        NR 1.0000000000
8684   Simple_repeat    62     TE_peak        NR 1.0000000000
8685   Simple_repeat    81     TE_peak        NR 1.0000000000
8686   Simple_repeat    25     TE_peak        NR 1.0000000000
8687             MIR    89     TE_peak        NR 1.0000000000
8688             MIR    39     TE_peak   LR_open 0.2437500000
8689              L2   404     TE_peak   LR_open 0.6977547496
8690              L2   210     TE_peak   LR_open 1.0000000000
8691       ERVL-MaLR    67     TE_peak   LR_open 0.2175324675
8692             MIR   121     TE_peak ESR_close 0.8642857143
8693             MIR   186     TE_peak ESR_close 1.0000000000
8694             MIR   224     TE_peak   LR_open 0.9739130435
8695             MIR    78     TE_peak   LR_open 1.0000000000
8696             MIR   101     TE_peak   LR_open 0.5343915344
8697              L2    66     TE_peak        NR 1.0000000000
8698            <NA>    NA not_TE_peak        NR           NA
8699             MIR   157     TE_peak        NR 1.0000000000
8700            ERV1   357     TE_peak    ESR_OC 0.7677419355
8701             Alu   299     TE_peak    ESR_OC 1.0000000000
8702            ERV1    49     TE_peak    ESR_OC 0.2578947368
8703             Alu   100     TE_peak   LR_open 0.3378378378
8704            <NA>    NA not_TE_peak        NR           NA
8705             MIR    12     TE_peak        NR 0.1558441558
8706              L2   367     TE_peak        NR 0.6684881603
8707            <NA>    NA not_TE_peak  EAR_open           NA
8708            <NA>    NA not_TE_peak        NR           NA
8709              L2   140     TE_peak  EAR_open 0.2000000000
8710            <NA>    NA not_TE_peak        NR           NA
8711     hAT-Charlie   140     TE_peak ESR_close 0.6896551724
8712             Alu    97     TE_peak ESR_close 0.3356401384
8713     hAT-Charlie    54     TE_peak        NR 0.2007434944
8714             MIR    53     TE_peak        NR 0.3812949640
8715              L1   290     TE_peak   LR_open 0.4777594728
8716             Alu   122     TE_peak   LR_open 0.3973941368
8717             MIR    16     TE_peak        NR 0.1250000000
8718             MIR    28     TE_peak        NR 1.0000000000
8719             MIR    65     TE_peak        NR 0.4362416107
8720             MIR   101     TE_peak        NR 0.5549450549
8721              L2    34     TE_peak        NR 1.0000000000
8722             Alu    79     TE_peak        NR 0.4488636364
8723   Simple_repeat    30     TE_peak ESR_close 1.0000000000
8724            <NA>    NA not_TE_peak   LR_open           NA
8725            <NA>    NA not_TE_peak        NR           NA
8726             MIR   119     TE_peak   LR_open 0.5265486726
8727            <NA>    NA not_TE_peak   LR_open           NA
8728   Simple_repeat    42     TE_peak   LR_open 1.0000000000
8729              L2    49     TE_peak   LR_open 0.1212871287
8730             MIR   143     TE_peak        NR 0.8666666667
8731              L2   102     TE_peak  LR_close 0.8500000000
8732   Simple_repeat    22     TE_peak  LR_close 1.0000000000
8733             MIR   193     TE_peak  LR_close 1.0000000000
8734             MIR   144     TE_peak   not_mrc 0.6515837104
8735              L2    86     TE_peak   not_mrc 1.0000000000
8736   Simple_repeat    43     TE_peak ESR_close 1.0000000000
8737   Simple_repeat    41     TE_peak ESR_close 1.0000000000
8738              L2    69     TE_peak  LR_close 0.7752808989
8739              L2    86     TE_peak   LR_open 0.1345852895
8740       ERVL-MaLR   245     TE_peak   LR_open 0.8448275862
8741             MIR     5     TE_peak        NR 0.0239234450
8742             MIR    19     TE_peak        NR 0.4523809524
8743             MIR    91     TE_peak        NR 1.0000000000
8744            <NA>    NA not_TE_peak        NR           NA
8745   Simple_repeat    56     TE_peak        NR 1.0000000000
8746   Simple_repeat    55     TE_peak  LR_close 1.0000000000
8747              L2    67     TE_peak  LR_close 1.0000000000
8748              L2   292     TE_peak   LR_open 0.8613569322
8749             Alu    15     TE_peak   LR_open 0.0473186120
8750              L2    98     TE_peak   LR_open 1.0000000000
8751             MIR    43     TE_peak   LR_open 0.7166666667
8752             MIR   152     TE_peak  LR_close 0.8636363636
8753            ERVL    68     TE_peak  LR_close 0.7391304348
8754             MIR    39     TE_peak        NR 0.1959798995
8755            <NA>    NA not_TE_peak   LR_open           NA
8756             MIR   111     TE_peak        NR 0.4404761905
8757            <NA>    NA not_TE_peak   LR_open           NA
8758              L2     6     TE_peak        NR 0.0967741935
8759              L2   103     TE_peak        NR 1.0000000000
8760             Alu   252     TE_peak        NR 0.8600682594
8761            <NA>    NA not_TE_peak        NR           NA
8762            <NA>    NA not_TE_peak  ESR_open           NA
8763            <NA>    NA not_TE_peak        NR           NA
8764     hAT-Charlie    79     TE_peak   LR_open 1.0000000000
8765     hAT-Charlie    86     TE_peak   LR_open 0.9052631579
8766             MIR    83     TE_peak  ESR_open 1.0000000000
8767            <NA>    NA not_TE_peak        NR           NA
8768   Simple_repeat    28     TE_peak ESR_close 0.5957446809
8769            ERV1   194     TE_peak ESR_close 1.0000000000
8770             MIR   228     TE_peak ESR_close 1.0000000000
8771             MIR    49     TE_peak ESR_close 1.0000000000
8772     hAT-Charlie   143     TE_peak ESR_close 1.0000000000
8773              L2   633     TE_peak        NR 0.6459183673
8774            <NA>    NA not_TE_peak        NR           NA
8775             MIR   160     TE_peak        NR 1.0000000000
8776   Simple_repeat    25     TE_peak        NR 1.0000000000
8777             MIR   140     TE_peak ESR_close 0.7407407407
8778             MIR    96     TE_peak ESR_close 1.0000000000
8779     hAT-Charlie   139     TE_peak ESR_close 1.0000000000
8780             MIR   145     TE_peak ESR_close 0.8682634731
8781   Simple_repeat    48     TE_peak        NR 1.0000000000
8782   Simple_repeat    60     TE_peak        NR 1.0000000000
8783   Simple_repeat    35     TE_peak        NR 1.0000000000
8784   Simple_repeat    31     TE_peak        NR 1.0000000000
8785            <NA>    NA not_TE_peak        NR           NA
8786              L2    66     TE_peak   LR_open 0.4714285714
8787     hAT-Charlie   180     TE_peak   LR_open 1.0000000000
8788             MIR   187     TE_peak   LR_open 1.0000000000
8789       ERVL-MaLR    93     TE_peak        NR 0.8532110092
8790             MIR    77     TE_peak        NR 1.0000000000
8791              L2    73     TE_peak        NR 1.0000000000
8792   Simple_repeat    10     TE_peak   LR_open 0.1886792453
8793              L2   120     TE_peak   LR_open 1.0000000000
8794              L2    52     TE_peak        NR 0.6046511628
8795              L2   284     TE_peak   LR_open 0.6439909297
8796             MIR   117     TE_peak   LR_open 0.5625000000
8797   Simple_repeat    25     TE_peak        NR 1.0000000000
8798            ERVL   457     TE_peak        NR 0.9785867238
8799            ERVL   563     TE_peak        NR 0.9352159468
8800       ERVL-MaLR    57     TE_peak  LR_close 0.1425000000
8801              L2   173     TE_peak EAR_close 0.2079326923
8802              L2    86     TE_peak   not_mrc 1.0000000000
8803              L2   142     TE_peak   LR_open 1.0000000000
8804             MIR   112     TE_peak ESR_close 0.5863874346
8805            <NA>    NA not_TE_peak  ESR_open           NA
8806            <NA>    NA not_TE_peak        NR           NA
8807              L2   232     TE_peak  LR_close 1.0000000000
8808            <NA>    NA not_TE_peak   LR_open           NA
8809            ERVL    95     TE_peak   LR_open 0.5163043478
8810             CR1    87     TE_peak   LR_open 1.0000000000
8811      hAT-Tip100   182     TE_peak ESR_close 1.0000000000
8812            <NA>    NA not_TE_peak   LR_open           NA
8813            ERVL    14     TE_peak        NR 0.0933333333
8814             MIR   119     TE_peak        NR 1.0000000000
8815             MIR   107     TE_peak        NR 1.0000000000
8816            <NA>    NA not_TE_peak   LR_open           NA
8817             MIR   214     TE_peak   LR_open 1.0000000000
8818             Alu   236     TE_peak   LR_open 0.8000000000
8819     hAT-Charlie    73     TE_peak   LR_open 0.3273542601
8820    TcMar-Tigger   124     TE_peak   LR_open 0.8157894737
8821            <NA>    NA not_TE_peak        NR           NA
8822            <NA>    NA not_TE_peak        NR           NA
8823            <NA>    NA not_TE_peak  ESR_open           NA
8824            <NA>    NA not_TE_peak        NR           NA
8825             MIR    60     TE_peak  ESR_open 1.0000000000
8826            <NA>    NA not_TE_peak  EAR_open           NA
8827   Simple_repeat    22     TE_peak        NR 1.0000000000
8828            <NA>    NA not_TE_peak   LR_open           NA
8829             MIR    25     TE_peak   LR_open 0.1054852321
8830              L2    64     TE_peak   LR_open 0.8000000000
8831     hAT-Charlie    74     TE_peak   LR_open 0.2208955224
8832            ERVL   369     TE_peak   LR_open 1.0000000000
8833            <NA>    NA not_TE_peak  ESR_open           NA
8834             CR1     5     TE_peak        NR 0.0357142857
8835              L2    48     TE_peak        NR 0.2580645161
8836              L2   123     TE_peak   LR_open 1.0000000000
8837             CR1    70     TE_peak   LR_open 0.1897018970
8838   Simple_repeat    35     TE_peak        NR 1.0000000000
8839        RTE-BovB   208     TE_peak        NR 1.0000000000
8840   Simple_repeat    28     TE_peak        NR 1.0000000000
8841            <NA>    NA not_TE_peak        NR           NA
8842            <NA>    NA not_TE_peak  ESR_open           NA
8843            <NA>    NA not_TE_peak    ESR_OC           NA
8844   Simple_repeat    44     TE_peak        NR 1.0000000000
8845  Low_complexity    75     TE_peak        NR 1.0000000000
8846   Simple_repeat    26     TE_peak        NR 1.0000000000
8847   Simple_repeat    37     TE_peak        NR 1.0000000000
8848   Simple_repeat    63     TE_peak        NR 1.0000000000
8849    TcMar-Tigger   174     TE_peak        NR 0.5117647059
8850       ERVL-MaLR   164     TE_peak   LR_open 0.7130434783
8851             MIR    47     TE_peak   LR_open 0.5595238095
8852            ERV1   332     TE_peak   not_mrc 0.5195618153
8853            <NA>    NA not_TE_peak   LR_open           NA
8854             MIR    22     TE_peak        NR 0.2268041237
8855   Simple_repeat    39     TE_peak        NR 1.0000000000
8856              L2   300     TE_peak ESR_close 0.3891050584
8857   Simple_repeat    37     TE_peak        NR 1.0000000000
8858            <NA>    NA not_TE_peak        NR           NA
8859       ERVL-MaLR   239     TE_peak  LR_close 0.6459459459
8860             MIR   111     TE_peak        NR 1.0000000000
8861             MIR    35     TE_peak  LR_close 0.1785714286
8862    TcMar-Tigger   101     TE_peak   LR_open 1.0000000000
8863             MIR    88     TE_peak        NR 0.8301886792
8864             MIR    64     TE_peak        NR 1.0000000000
8865            <NA>    NA not_TE_peak  EAR_open           NA
8866       ERVL-MaLR   166     TE_peak   LR_open 0.7345132743
8867            ERV1   395     TE_peak   LR_open 0.6200941915
8868             MIR    94     TE_peak   LR_open 0.6482758621
8869              L2   130     TE_peak   LR_open 1.0000000000
8870     hAT-Charlie   207     TE_peak   LR_open 1.0000000000
8871       ERVL-MaLR   241     TE_peak        NR 0.8197278912
8872              L2     6     TE_peak        NR 0.0140845070
8873   Simple_repeat    36     TE_peak        NR 1.0000000000
8874   Simple_repeat    37     TE_peak   LR_open 1.0000000000
8875       ERVL-MaLR   122     TE_peak   LR_open 1.0000000000
8876            <NA>    NA not_TE_peak        NR           NA
8877             MIR   225     TE_peak EAR_close 1.0000000000
8878       ERVL-MaLR   464     TE_peak EAR_close 1.0000000000
8879            <NA>    NA not_TE_peak ESR_close           NA
8880              L2    51     TE_peak        NR 0.0524691358
8881              L2   219     TE_peak        NR 1.0000000000
8882             MIR   219     TE_peak        NR 1.0000000000
8883   Simple_repeat    35     TE_peak ESR_close 1.0000000000
8884            <NA>    NA not_TE_peak        NR           NA
8885       ERVL-MaLR    10     TE_peak        NR 0.0209643606
8886            ERVL   230     TE_peak        NR 0.5943152455
8887              L2   127     TE_peak        NR 1.0000000000
8888              L1   462     TE_peak        NR 1.0000000000
8889              L2   150     TE_peak        NR 1.0000000000
8890              L1   565     TE_peak        NR 0.2947313511
8891       ERVL-MaLR   202     TE_peak   LR_open 0.7038327526
8892             MIR   147     TE_peak   LR_open 1.0000000000
8893             MIR   142     TE_peak   LR_open 0.9726027397
8894              L2     2     TE_peak  ESR_open 0.0044052863
8895            ERV1   566     TE_peak  ESR_open 1.0000000000
8896     hAT-Charlie    87     TE_peak        NR 0.3883928571
8897             MIR   161     TE_peak        NR 1.0000000000
8898            ERVL   137     TE_peak        NR 0.3722826087
8899              L1   891     TE_peak        NR 0.3380121396
8900              L2   213     TE_peak   LR_open 0.8949579832
8901            ERVL    90     TE_peak   LR_open 1.0000000000
8902            ERV1   186     TE_peak        NR 0.9073170732
8903            ERVL    58     TE_peak        NR 0.1269146608
8904            ERV1   106     TE_peak        NR 0.1518624642
8905   Simple_repeat    16     TE_peak        NR 1.0000000000
8906   Simple_repeat    44     TE_peak        NR 1.0000000000
8907   Simple_repeat    45     TE_peak        NR 1.0000000000
8908   Simple_repeat    45     TE_peak        NR 1.0000000000
8909     hAT-Charlie    66     TE_peak  LR_close 1.0000000000
8910              L1   319     TE_peak        NR 1.0000000000
8911       ERVL-MaLR    82     TE_peak        NR 0.1938534279
8912            ERV1   200     TE_peak  LR_close 0.9302325581
8913            ERV1   122     TE_peak  LR_close 0.4784313725
8914            <NA>    NA not_TE_peak        NR           NA
8915            ERVL   227     TE_peak        NR 0.5159090909
8916              L2   168     TE_peak        NR 1.0000000000
8917       ERVL-MaLR    95     TE_peak        NR 0.2588555858
8918           ERVL?   304     TE_peak        NR 1.0000000000
8919              L2    55     TE_peak        NR 0.4044117647
8920    TcMar-Tigger   328     TE_peak   LR_open 0.5815602837
8921              L1   160     TE_peak   LR_open 1.0000000000
8922              L2   501     TE_peak   LR_open 0.7500000000
8923              L2   104     TE_peak   LR_open 1.0000000000
8924       ERVL-MaLR    51     TE_peak   LR_open 0.1424581006
8925            ERVL   120     TE_peak   LR_open 0.2823529412
8926             MIR   125     TE_peak        NR 0.8064516129
8927            <NA>    NA not_TE_peak        NR           NA
8928            <NA>    NA not_TE_peak        NR           NA
8929            <NA>    NA not_TE_peak        NR           NA
8930            <NA>    NA not_TE_peak  LR_close           NA
8931             CR1     2     TE_peak   LR_open 0.0338983051
8932             Alu   143     TE_peak   LR_open 0.5257352941
8933            <NA>    NA not_TE_peak        NR           NA
8934            <NA>    NA not_TE_peak   LR_open           NA
8935    TcMar-Tigger    66     TE_peak   LR_open 0.7586206897
8936    TcMar-Tigger   181     TE_peak   LR_open 0.6284722222
8937             MIR    36     TE_peak        NR 0.3050847458
8938              L2    99     TE_peak        NR 1.0000000000
8939             Alu    96     TE_peak        NR 0.3137254902
8940            <NA>    NA not_TE_peak  EAR_open           NA
8941   Simple_repeat    52     TE_peak  EAR_open 1.0000000000
8942   Simple_repeat    47     TE_peak  EAR_open 1.0000000000
8943            <NA>    NA not_TE_peak        NR           NA
8944              L1   230     TE_peak        NR 0.2323232323
8945             Alu   275     TE_peak        NR 0.9166666667
8946    TcMar-Tigger   278     TE_peak        NR 0.8373493976
8947             Alu    66     TE_peak        NR 0.2237288136
8948              L2    70     TE_peak        NR 1.0000000000
8949              L2    77     TE_peak        NR 0.4162162162
8950              L2    97     TE_peak  EAR_open 0.9150943396
8951            ERV1   580     TE_peak        NR 0.3706070288
8952            ERV1   134     TE_peak   LR_open 0.2388591800
8953            ERV1   334     TE_peak   LR_open 0.7713625866
8954            <NA>    NA not_TE_peak        NR           NA
8955             Alu   114     TE_peak        NR 0.3762376238
8956              L1   372     TE_peak        NR 0.8691588785
8957   Simple_repeat    29     TE_peak   LR_open 1.0000000000
8958             Alu   163     TE_peak   LR_open 0.5000000000
8959       ERVL-MaLR   436     TE_peak   LR_open 1.0000000000
8960            ERVK    26     TE_peak   LR_open 0.0266666667
8961            ERVK   602     TE_peak        NR 0.6174358974
8962       ERVL-MaLR   140     TE_peak        NR 0.6008583691
8963              L1   191     TE_peak   LR_open 1.0000000000
8964       ERVL-MaLR   152     TE_peak   LR_open 0.4010554090
8965   hAT-Blackjack   188     TE_peak        NR 1.0000000000
8966             Alu   121     TE_peak EAR_close 0.8581560284
8967             MIR   152     TE_peak EAR_close 1.0000000000
8968   Simple_repeat    45     TE_peak   LR_open 1.0000000000
8969             Alu   251     TE_peak   LR_open 0.8122977346
8970   Simple_repeat    19     TE_peak        NR 1.0000000000
8971       ERVL-MaLR   178     TE_peak        NR 0.4395061728
8972              L2   133     TE_peak EAR_close 1.0000000000
8973            <NA>    NA not_TE_peak        NR           NA
8974            <NA>    NA not_TE_peak ESR_close           NA
8975       ERVL-MaLR   220     TE_peak        NR 0.5759162304
8976              L1   214     TE_peak        NR 0.2183673469
8977              L1   282     TE_peak        NR 1.0000000000
8978              L1     9     TE_peak        NR 0.0099337748
8979            ERV1   568     TE_peak   LR_open 0.7706919946
8980              L1   399     TE_peak        NR 0.3119624707
8981            <NA>    NA not_TE_peak        NR           NA
8982   Simple_repeat    24     TE_peak        NR 1.0000000000
8983            <NA>    NA not_TE_peak        NR           NA
8984            <NA>    NA not_TE_peak        NR           NA
8985        tRNA-Deu   102     TE_peak   LR_open 1.0000000000
8986              L2   194     TE_peak        NR 0.5558739255
8987    TcMar-Tigger    40     TE_peak        NR 1.0000000000
8988            <NA>    NA not_TE_peak        NR           NA
8989            ERVL   193     TE_peak        NR 0.3844621514
8990             MIR    80     TE_peak        NR 0.7407407407
8991             MIR    80     TE_peak        NR 1.0000000000
8992              L2   445     TE_peak        NR 0.9270833333
8993             MIR    58     TE_peak        NR 1.0000000000
8994       ERVL-MaLR    86     TE_peak        NR 1.0000000000
8995       ERVL-MaLR   118     TE_peak        NR 1.0000000000
8996              L2   151     TE_peak        NR 0.6863636364
8997            <NA>    NA not_TE_peak        NR           NA
8998            ERVK   330     TE_peak   not_mrc 0.7081545064
8999            ERV1   219     TE_peak   not_mrc 0.4211538462
9000             Alu   160     TE_peak        NR 0.5211726384
9001              L1   117     TE_peak        NR 1.0000000000
9002     hAT-Charlie   139     TE_peak        NR 1.0000000000
9003            <NA>    NA not_TE_peak  LR_close           NA
9004   Simple_repeat    50     TE_peak  ESR_open 1.0000000000
9005            <NA>    NA not_TE_peak        NR           NA
9006             Alu   151     TE_peak        NR 0.8483146067
9007            <NA>    NA not_TE_peak        NR           NA
9008      hAT-Tip100   437     TE_peak        NR 0.2717661692
9009            <NA>    NA not_TE_peak        NR           NA
9010            <NA>    NA not_TE_peak        NR           NA
9011             MIR    54     TE_peak   LR_open 0.2231404959
9012            ERVL   375     TE_peak   LR_open 0.8029978587
9013            ERVL   140     TE_peak        NR 1.0000000000
9014       ERVL-MaLR   462     TE_peak        NR 0.6209677419
9015       ERVL-MaLR    76     TE_peak        NR 1.0000000000
9016            <NA>    NA not_TE_peak        NR           NA
9017              L2   276     TE_peak   LR_open 1.0000000000
9018       ERVL-MaLR   266     TE_peak   LR_open 1.0000000000
9019              L2   261     TE_peak        NR 0.5437500000
9020            <NA>    NA not_TE_peak        NR           NA
9021             MIR   139     TE_peak  LR_close 0.8373493976
9022            <NA>    NA not_TE_peak        NR           NA
9023             MIR   144     TE_peak        NR 1.0000000000
9024            <NA>    NA not_TE_peak  LR_close           NA
9025     hAT-Charlie   137     TE_peak  LR_close 1.0000000000
9026             MIR   181     TE_peak  LR_close 1.0000000000
9027       ERVL-MaLR    85     TE_peak        NR 0.2724358974
9028              L2    20     TE_peak  LR_close 0.0514138817
9029        RTE-BovB   198     TE_peak  LR_close 0.5772594752
9030   Simple_repeat    22     TE_peak        NR 1.0000000000
9031       ERVL-MaLR   164     TE_peak        NR 0.4823529412
9032             MIR   177     TE_peak        NR 1.0000000000
9033             CR1    11     TE_peak        NR 0.0839694656
9034             MIR   205     TE_peak   LR_open 1.0000000000
9035            <NA>    NA not_TE_peak  LR_close           NA
9036            <NA>    NA not_TE_peak        NR           NA
9037            ERV1   405     TE_peak        NR 0.7655954631
9038            <NA>    NA not_TE_peak        NR           NA
9039              L2    65     TE_peak EAR_close 0.2579365079
9040            <NA>    NA not_TE_peak        NR           NA
9041   Simple_repeat    33     TE_peak        NR 1.0000000000
9042              L1   180     TE_peak        NR 0.2252816020
9043   Simple_repeat    33     TE_peak        NR 1.0000000000
9044   Simple_repeat    48     TE_peak        NR 1.0000000000
9045   Simple_repeat    23     TE_peak        NR 1.0000000000
9046   Simple_repeat    81     TE_peak        NR 1.0000000000
9047   Simple_repeat    43     TE_peak        NR 1.0000000000
9048  Low_complexity    74     TE_peak        NR 1.0000000000
9049            <NA>    NA not_TE_peak        NR           NA
9050      hAT-Tip100   356     TE_peak  LR_close 0.9780219780
9051            <NA>    NA not_TE_peak        NR           NA
9052          hAT-Ac     2     TE_peak  LR_close 0.0256410256
9053            ERVL   378     TE_peak  LR_close 0.8325991189
9054              L1    84     TE_peak        NR 0.2288828338
9055              L2   205     TE_peak        NR 1.0000000000
9056             Alu    81     TE_peak        NR 0.2571428571
9057            ERVL   433     TE_peak        NR 0.7029220779
9058            ERV1    35     TE_peak        NR 0.3153153153
9059              L1   827     TE_peak  LR_close 0.6232102487
9060            <NA>    NA not_TE_peak  EAR_open           NA
9061              L2   348     TE_peak   LR_open 0.6468401487
9062            ERV1   455     TE_peak        NR 0.7647058824
9063           Gypsy   133     TE_peak ESR_close 0.5175097276
9064           Gypsy    92     TE_peak ESR_close 1.0000000000
9065   Simple_repeat    36     TE_peak        NR 1.0000000000
9066            <NA>    NA not_TE_peak  EAR_open           NA
9067            <NA>    NA not_TE_peak        NR           NA
9068            <NA>    NA not_TE_peak        NR           NA
9069            <NA>    NA not_TE_peak        NR           NA
9070            ERV1   397     TE_peak        NR 0.7504725898
9071       ERVL-MaLR    92     TE_peak        NR 1.0000000000
9072            <NA>    NA not_TE_peak  LR_close           NA
9073             MIR   132     TE_peak   LR_open 1.0000000000
9074            <NA>    NA not_TE_peak    ESR_OC           NA
9075              L2    66     TE_peak   LR_open 0.5840707965
9076            <NA>    NA not_TE_peak   LR_open           NA
9077             MIR    64     TE_peak        NR 0.2895927602
9078     hAT-Charlie   149     TE_peak        NR 0.9551282051
9079            <NA>    NA not_TE_peak        NR           NA
9080              L1   179     TE_peak  LR_close 0.2571839080
9081             Alu   263     TE_peak  LR_close 0.8915254237
9082             Alu   288     TE_peak  LR_close 0.9350649351
9083       ERVL-MaLR   288     TE_peak  LR_close 0.7461139896
9084             Alu   117     TE_peak        NR 0.8602941176
9085            <NA>    NA not_TE_peak        NR           NA
9086             CR1    41     TE_peak  ESR_open 1.0000000000
9087            <NA>    NA not_TE_peak        NR           NA
9088       5S-Deu-L2   246     TE_peak  EAR_open 1.0000000000
9089            <NA>    NA not_TE_peak        NR           NA
9090       ERVL-MaLR   238     TE_peak  LR_close 0.5118279570
9091              L2   162     TE_peak        NR 1.0000000000
9092            ERVL   323     TE_peak        NR 1.0000000000
9093             MIR    10     TE_peak   LR_open 0.0438596491
9094            <NA>    NA not_TE_peak  LR_close           NA
9095            <NA>    NA not_TE_peak        NR           NA
9096            <NA>    NA not_TE_peak  LR_close           NA
9097            ERV1   286     TE_peak        NR 0.1700356718
9098            ERVL    68     TE_peak        NR 1.0000000000
9099  Low_complexity   194     TE_peak        NR 1.0000000000
9100            ERV1    89     TE_peak        NR 0.0595716198
9101       ERVL-MaLR   198     TE_peak        NR 0.8722466960
9102             Alu   130     TE_peak        NR 0.4452054795
9103            <NA>    NA not_TE_peak        NR           NA
9104        PiggyBac   139     TE_peak        NR 1.0000000000
9105             MIR    92     TE_peak  LR_close 0.3948497854
9106              L1    90     TE_peak  LR_close 1.0000000000
9107   Simple_repeat    50     TE_peak   LR_open 1.0000000000
9108             MIR    55     TE_peak   LR_open 1.0000000000
9109             CR1   172     TE_peak   LR_open 1.0000000000
9110            <NA>    NA not_TE_peak   LR_open           NA
9111   Simple_repeat    29     TE_peak        NR 0.6904761905
9112             MIR     4     TE_peak        NR 0.0219780220
9113            <NA>    NA not_TE_peak        NR           NA
9114             MIR    64     TE_peak  LR_close 0.3350785340
9115              L2    74     TE_peak        NR 1.0000000000
9116         Unknown   144     TE_peak  ESR_open 1.0000000000
9117              L2   197     TE_peak   LR_open 0.6888111888
9118            <NA>    NA not_TE_peak        NR           NA
9119              L2   297     TE_peak        NR 0.1622950820
9120              L2   175     TE_peak   LR_open 0.7847533632
9121    TcMar-Tigger   365     TE_peak        NR 0.3650000000
9122            <NA>    NA not_TE_peak        NR           NA
9123    TcMar-Tigger   254     TE_peak        NR 0.9548872180
9124   Simple_repeat    35     TE_peak        NR 1.0000000000
9125  Low_complexity    54     TE_peak        NR 0.5400000000
9126   Simple_repeat    41     TE_peak   LR_open 1.0000000000
9127              L2   263     TE_peak        NR 1.0000000000
9128              L2   358     TE_peak   LR_open 0.9889502762
9129            <NA>    NA not_TE_peak        NR           NA
9130             MIR    37     TE_peak        NR 0.2163742690
9131             MIR   225     TE_peak        NR 1.0000000000
9132              L2   199     TE_peak        NR 0.2230941704
9133   Simple_repeat    17     TE_peak   LR_open 1.0000000000
9134  Low_complexity    74     TE_peak        NR 1.0000000000
9135     hAT-Charlie   163     TE_peak        NR 1.0000000000
9136             CR1    97     TE_peak        NR 0.7637795276
9137            <NA>    NA not_TE_peak        NR           NA
9138      hAT-Tip100   122     TE_peak ESR_close 1.0000000000
9139  Low_complexity    47     TE_peak ESR_close 1.0000000000
9140             Alu   222     TE_peak   LR_open 0.8844621514
9141        PiggyBac   119     TE_peak   LR_open 1.0000000000
9142            ERV1   434     TE_peak        NR 0.6121297602
9143            <NA>    NA not_TE_peak        NR           NA
9144            <NA>    NA not_TE_peak        NR           NA
9145            <NA>    NA not_TE_peak ESR_close           NA
9146            <NA>    NA not_TE_peak   not_mrc           NA
9147            <NA>    NA not_TE_peak   LR_open           NA
9148            ERVL   281     TE_peak  LR_close 0.3530150754
9149    TcMar-Tigger   460     TE_peak   LR_open 0.6609195402
9150            ERV1   120     TE_peak   LR_open 0.3986710963
9151            ERV1   245     TE_peak   LR_open 1.0000000000
9152        RTE-BovB   124     TE_peak  LR_close 1.0000000000
9153            <NA>    NA not_TE_peak        NR           NA
9154            <NA>    NA not_TE_peak        NR           NA
9155            <NA>    NA not_TE_peak        NR           NA
9156            <NA>    NA not_TE_peak   LR_open           NA
9157   Simple_repeat    31     TE_peak        NR 1.0000000000
9158              L1   142     TE_peak        NR 0.6604651163
9159              L1    44     TE_peak        NR 0.1437908497
9160             Alu    43     TE_peak   LR_open 0.1391585761
9161              L2   129     TE_peak   LR_open 1.0000000000
9162            ERVL    82     TE_peak  LR_close 1.0000000000
9163              L1   176     TE_peak  LR_close 1.0000000000
9164            ERVL    63     TE_peak  LR_close 0.3405405405
9165              L2   192     TE_peak  LR_close 0.4671532847
9166            <NA>    NA not_TE_peak        NR           NA
9167             Alu   227     TE_peak        NR 0.7541528239
9168              L1    16     TE_peak        NR 0.0059303188
9169              L1   561     TE_peak        NR 0.4455917395
9170    TcMar-Tigger   456     TE_peak   LR_open 0.6686217009
9171             Alu   274     TE_peak        NR 1.0000000000
9172             MIR   218     TE_peak        NR 0.9396551724
9173       ERVL-MaLR   335     TE_peak        NR 1.0000000000
9174     hAT-Charlie   123     TE_peak   LR_open 1.0000000000
9175             Alu    46     TE_peak   LR_open 0.1642857143
9176              L1   711     TE_peak   LR_open 0.4311704063
9177              L2   445     TE_peak        NR 1.0000000000
9178             MIR   211     TE_peak   LR_open 1.0000000000
9179       ERVL-MaLR   308     TE_peak   LR_open 1.0000000000
9180            <NA>    NA not_TE_peak        NR           NA
9181            <NA>    NA not_TE_peak   not_mrc           NA
9182            ERV1   193     TE_peak   LR_open 0.4923469388
9183   Simple_repeat    62     TE_peak        NR 1.0000000000
9184   Simple_repeat    20     TE_peak        NR 1.0000000000
9185   Simple_repeat    40     TE_peak        NR 1.0000000000
9186   Simple_repeat    75     TE_peak        NR 1.0000000000
9187   Simple_repeat    75     TE_peak        NR 1.0000000000
9188             MIR    49     TE_peak   LR_open 1.0000000000
9189              L1   969     TE_peak   LR_open 0.4017412935
9190   Simple_repeat    72     TE_peak        NR 1.0000000000
9191  Low_complexity    49     TE_peak   not_mrc 1.0000000000
9192            ERV1   349     TE_peak   LR_open 0.5147492625
9193             Alu    76     TE_peak   LR_open 0.2533333333
9194             Alu   300     TE_peak   LR_open 0.9900990099
9195              L1    39     TE_peak   LR_open 0.0639344262
9196            ERV1   170     TE_peak  EAR_open 0.2857142857
9197             Alu    75     TE_peak  EAR_open 1.0000000000
9198            <NA>    NA not_TE_peak        NR           NA
9199            ERVK   352     TE_peak        NR 0.3502487562
9200             Alu   304     TE_peak        NR 1.0000000000
9201       ERVL-MaLR    19     TE_peak        NR 0.0363984674
9202              L1   576     TE_peak        NR 0.6134185304
9203              L1   656     TE_peak        NR 0.6514399206
9204             Alu    44     TE_peak   LR_open 0.3211678832
9205              L2   149     TE_peak   LR_open 1.0000000000
9206             MIR   115     TE_peak   LR_open 0.8455882353
9207       ERVL-MaLR    65     TE_peak   LR_open 1.0000000000
9208             Alu   288     TE_peak   LR_open 1.0000000000
9209       ERVL-MaLR   124     TE_peak   LR_open 0.4824902724
9210             MIR    10     TE_peak        NR 0.1265822785
9211   Simple_repeat    12     TE_peak   LR_open 0.2727272727
9212             MIR   120     TE_peak   LR_open 1.0000000000
9213            <NA>    NA not_TE_peak        NR           NA
9214             MIR     7     TE_peak        NR 0.0316742081
9215     hAT-Charlie   185     TE_peak   LR_open 1.0000000000
9216             Alu   234     TE_peak   LR_open 0.8041237113
9217            <NA>    NA not_TE_peak  LR_close           NA
9218             MIR   173     TE_peak        NR 0.7621145374
9219            ERV1   466     TE_peak        NR 1.0000000000
9220             Alu    57     TE_peak ESR_close 0.1912751678
9221            <NA>    NA not_TE_peak        NR           NA
9222            ERVL   253     TE_peak        NR 0.5476190476
9223              L2   123     TE_peak  ESR_open 1.0000000000
9224     hAT-Charlie    80     TE_peak  ESR_open 0.2531645570
9225  Low_complexity   117     TE_peak  LR_close 1.0000000000
9226            <NA>    NA not_TE_peak        NR           NA
9227              L2   245     TE_peak   LR_open 1.0000000000
9228             Alu   125     TE_peak        NR 0.4222972973
9229              L2   499     TE_peak        NR 1.0000000000
9230   Simple_repeat    32     TE_peak  EAR_open 1.0000000000
9231            <NA>    NA not_TE_peak        NR           NA
9232              L1   388     TE_peak        NR 0.4020725389
9233             CR1   180     TE_peak  EAR_open 0.6691449814
9234              L2    60     TE_peak  EAR_open 0.1351351351
9235              L2   124     TE_peak  EAR_open 0.3563218391
9236             MIR    24     TE_peak        NR 0.1518987342
9237       ERVL-MaLR   315     TE_peak        NR 1.0000000000
9238              L1   708     TE_peak        NR 0.4224343675
9239            ERV1   277     TE_peak   LR_open 0.6238738739
9240            <NA>    NA not_TE_peak        NR           NA
9241           RTE-X    47     TE_peak        NR 0.3533834586
9242     hAT-Charlie   151     TE_peak        NR 1.0000000000
9243            <NA>    NA not_TE_peak   LR_open           NA
9244            <NA>    NA not_TE_peak        NR           NA
9245            <NA>    NA not_TE_peak        NR           NA
9246      hAT-Tip100     7     TE_peak        NR 0.0260223048
9247   Simple_repeat    48     TE_peak        NR 1.0000000000
9248             MIR    63     TE_peak        NR 1.0000000000
9249            ERV1    13     TE_peak EAR_close 0.0185714286
9250            <NA>    NA not_TE_peak        NR           NA
9251            ERVL    96     TE_peak        NR 0.3664122137
9252            <NA>    NA not_TE_peak ESR_close           NA
9253            <NA>    NA not_TE_peak        NR           NA
9254              L2   108     TE_peak  LR_close 1.0000000000
9255            ERVL   126     TE_peak  LR_close 0.3987341772
9256       ERVL-MaLR   347     TE_peak        NR 1.0000000000
9257            <NA>    NA not_TE_peak        NR           NA
9258            ERVL   144     TE_peak   LR_open 0.1608938547
9259      hAT-Tip100   147     TE_peak   LR_open 1.0000000000
9260   Simple_repeat    18     TE_peak        NR 0.8181818182
9261             CR1    56     TE_peak        NR 1.0000000000
9262              L2   113     TE_peak        NR 1.0000000000
9263            <NA>    NA not_TE_peak        NR           NA
9264            <NA>    NA not_TE_peak        NR           NA
9265            <NA>    NA not_TE_peak        NR           NA
9266            <NA>    NA not_TE_peak EAR_close           NA
9267              L2   183     TE_peak        NR 0.2077185017
9268   Simple_repeat    37     TE_peak        NR 1.0000000000
9269            <NA>    NA not_TE_peak        NR           NA
9270              L2   130     TE_peak        NR 0.8227848101
9271           RTE-X   241     TE_peak        NR 1.0000000000
9272   Simple_repeat    18     TE_peak        NR 1.0000000000
9273        RTE-BovB   132     TE_peak   LR_open 1.0000000000
9274             MIR   108     TE_peak   LR_open 0.5454545455
9275           Gypsy   159     TE_peak   LR_open 0.4937888199
9276            <NA>    NA not_TE_peak        NR           NA
9277   TcMar-Mariner   179     TE_peak        NR 1.0000000000
9278             Alu    32     TE_peak  LR_close 0.1077441077
9279     hAT-Charlie    25     TE_peak  LR_close 1.0000000000
9280     hAT-Charlie   162     TE_peak  LR_close 1.0000000000
9281            <NA>    NA not_TE_peak        NR           NA
9282            <NA>    NA not_TE_peak        NR           NA
9283              L1    99     TE_peak EAR_close 0.1033402923
9284   Simple_repeat    43     TE_peak  EAR_open 1.0000000000
9285              L2    15     TE_peak   LR_open 0.1744186047
9286   Simple_repeat    32     TE_peak        NR 1.0000000000
9287   Simple_repeat    59     TE_peak        NR 1.0000000000
9288     hAT-Charlie   140     TE_peak  LR_close 0.4946996466
9289     hAT-Charlie    63     TE_peak   LR_open 1.0000000000
9290             MIR    66     TE_peak   LR_open 0.3837209302
9291            <NA>    NA not_TE_peak        NR           NA
9292            <NA>    NA not_TE_peak        NR           NA
9293             MIR   109     TE_peak EAR_close 0.5000000000
9294             Alu   255     TE_peak  ESR_open 0.8793103448
9295              L1    50     TE_peak  ESR_open 1.0000000000
9296            <NA>    NA not_TE_peak        NR           NA
9297              L2   247     TE_peak        NR 1.0000000000
9298             MIR   160     TE_peak        NR 1.0000000000
9299   Simple_repeat    25     TE_peak        NR 1.0000000000
9300  Low_complexity    44     TE_peak        NR 1.0000000000
9301             Alu   121     TE_peak  LR_close 0.3853503185
9302              L1   468     TE_peak  LR_close 0.5564803805
9303              L1   242     TE_peak   LR_open 0.2877526754
9304             Alu   211     TE_peak   LR_open 1.0000000000
9305              L1   198     TE_peak   LR_open 0.2397094431
9306            <NA>    NA not_TE_peak        NR           NA
9307             Alu    57     TE_peak ESR_close 0.1753846154
9308             Alu    45     TE_peak        NR 0.1490066225
9309     hAT-Charlie    98     TE_peak        NR 1.0000000000
9310            <NA>    NA not_TE_peak        NR           NA
9311            <NA>    NA not_TE_peak        NR           NA
9312    TcMar-Tigger  1058     TE_peak        NR 0.9104991394
9313   Simple_repeat    14     TE_peak        NR 1.0000000000
9314              L1    46     TE_peak        NR 1.0000000000
9315   Simple_repeat    62     TE_peak        NR 1.0000000000
9316              L1   116     TE_peak        NR 1.0000000000
9317            <NA>    NA not_TE_peak        NR           NA
9318             MIR   213     TE_peak  ESR_open 0.9181034483
9319            <NA>    NA not_TE_peak        NR           NA
9320              L1   622     TE_peak        NR 0.2953466287
9321   Simple_repeat    26     TE_peak        NR 1.0000000000
9322   Simple_repeat    46     TE_peak        NR 1.0000000000
9323              L1   163     TE_peak  ESR_open 0.6127819549
9324             Alu   260     TE_peak  ESR_open 0.8724832215
9325            <NA>    NA not_TE_peak        NR           NA
9326   Simple_repeat    40     TE_peak        NR 1.0000000000
9327   Simple_repeat    32     TE_peak        NR 1.0000000000
9328   Simple_repeat    57     TE_peak        NR 1.0000000000
9329              L2   107     TE_peak        NR 0.3128654971
9330     hAT-Charlie   206     TE_peak   LR_open 1.0000000000
9331             MIR     9     TE_peak        NR 0.6428571429
9332     hAT-Charlie   171     TE_peak        NR 0.7702702703
9333            <NA>    NA not_TE_peak        NR           NA
9334            rRNA    90     TE_peak        NR 1.0000000000
9335       ERVL-MaLR   149     TE_peak   LR_open 0.7563451777
9336       ERVL-MaLR   112     TE_peak   LR_open 0.3119777159
9337             Alu   188     TE_peak   LR_open 0.6573426573
9338             Alu    69     TE_peak   LR_open 0.2149532710
9339              L2   529     TE_peak        NR 1.0000000000
9340            <NA>    NA not_TE_peak        NR           NA
9341   Simple_repeat    28     TE_peak        NR 1.0000000000
9342              L2    75     TE_peak   LR_open 0.6818181818
9343              L2   223     TE_peak   LR_open 0.5837696335
9344            <NA>    NA not_TE_peak   LR_open           NA
9345   Simple_repeat    33     TE_peak        NR 1.0000000000
9346             Alu   274     TE_peak   not_mrc 1.0000000000
9347              L2   314     TE_peak   not_mrc 0.5313028765
9348             Alu   304     TE_peak        NR 1.0000000000
9349   Simple_repeat    82     TE_peak        NR 1.0000000000
9350            <NA>    NA not_TE_peak        NR           NA
9351             Alu    60     TE_peak  LR_close 0.2142857143
9352             MIR   179     TE_peak  LR_close 1.0000000000
9353            <NA>    NA not_TE_peak        NR           NA
9354            <NA>    NA not_TE_peak   LR_open           NA
9355             MIR   112     TE_peak        NR 0.7832167832
9356              L1   130     TE_peak        NR 0.1108269395
9357     hAT-Charlie   200     TE_peak        NR 1.0000000000
9358    TcMar-Tigger   173     TE_peak        NR 0.6553030303
9359              L1   203     TE_peak        NR 0.6170212766
9360            <NA>    NA not_TE_peak        NR           NA
9361            ERVL   338     TE_peak        NR 0.6666666667
9362              L1    41     TE_peak        NR 0.1371237458
9363            ERVL   131     TE_peak        NR 0.4410774411
9364  Low_complexity    44     TE_peak        NR 1.0000000000
9365  Low_complexity    38     TE_peak        NR 1.0000000000
9366              L2    90     TE_peak        NR 1.0000000000
9367             Alu     8     TE_peak        NR 0.0286738351
9368              L2   113     TE_peak        NR 0.8828125000
9369              L2    67     TE_peak        NR 0.2863247863
9370    TcMar-Tigger    82     TE_peak        NR 1.0000000000
9371   Simple_repeat    72     TE_peak        NR 1.0000000000
9372            <NA>    NA not_TE_peak        NR           NA
9373             Alu   147     TE_peak  LR_close 0.4900000000
9374              L2   195     TE_peak  LR_close 0.7414448669
9375              L1    33     TE_peak        NR 0.0195150798
9376            ERVL   451     TE_peak        NR 0.9616204691
9377              L1    26     TE_peak        NR 0.2300884956
9378              L2   299     TE_peak        NR 1.0000000000
9379       ERVL-MaLR    83     TE_peak   LR_open 0.7545454545
9380              L2   401     TE_peak   LR_open 0.8442105263
9381              L2    25     TE_peak   LR_open 0.0394944708
9382            <NA>    NA not_TE_peak EAR_close           NA
9383            ERV1   281     TE_peak   LR_open 0.0357097471
9384             MIR   246     TE_peak  LR_close 1.0000000000
9385            <NA>    NA not_TE_peak        NR           NA
9386            <NA>    NA not_TE_peak        NR           NA
9387            ERV1   428     TE_peak        NR 0.5005847953
9388        tRNA-RTE   153     TE_peak   LR_open 1.0000000000
9389   Simple_repeat    21     TE_peak EAR_close 0.3620689655
9390             Alu   139     TE_peak EAR_close 0.9652777778
9391       ERVL-MaLR    97     TE_peak  ESR_open 0.1644067797
9392       ERVL-MaLR   329     TE_peak  ESR_open 0.7633410673
9393            <NA>    NA not_TE_peak   LR_open           NA
9394            <NA>    NA not_TE_peak   LR_open           NA
9395            <NA>    NA not_TE_peak   not_mrc           NA
9396              L2   348     TE_peak  ESR_open 0.5403726708
9397   Simple_repeat    23     TE_peak        NR 0.6052631579
9398       ERVL-MaLR   203     TE_peak        NR 1.0000000000
9399       ERVL-MaLR   163     TE_peak        NR 1.0000000000
9400       ERVL-MaLR    98     TE_peak        NR 0.5077720207
9401            <NA>    NA not_TE_peak        NR           NA
9402            ERV1   421     TE_peak  ESR_open 1.0000000000
9403            ERV1    85     TE_peak  ESR_open 0.1804670913
9404            <NA>    NA not_TE_peak   LR_open           NA
9405            <NA>    NA not_TE_peak        NR           NA
9406            ERVK   504     TE_peak        NR 0.5283018868
9407       ERVL-MaLR   124     TE_peak        NR 0.2116040956
9408       ERVL-MaLR   190     TE_peak        NR 1.0000000000
9409            <NA>    NA not_TE_peak        NR           NA
9410            ERV1   403     TE_peak        NR 0.7810077519
9411            <NA>    NA not_TE_peak        NR           NA
9412            ERV1    66     TE_peak   LR_open 0.0822942643
9413            ERV1   113     TE_peak   LR_open 1.0000000000
9414              L1   499     TE_peak   LR_open 1.0000000000
9415              L1   113     TE_peak   LR_open 0.4688796680
9416            <NA>    NA not_TE_peak        NR           NA
9417              L2   197     TE_peak  LR_close 0.5090439276
9418            <NA>    NA not_TE_peak  LR_close           NA
9419            ERV1   110     TE_peak        NR 0.0769769069
9420            ERVL    48     TE_peak        NR 1.0000000000
9421            ERVL    45     TE_peak        NR 1.0000000000
9422            ERVL   239     TE_peak        NR 0.6809116809
9423             MIR    88     TE_peak    ESR_OC 0.3410852713
9424            <NA>    NA not_TE_peak        NR           NA
9425            <NA>    NA not_TE_peak   LR_open           NA
9426              L2   381     TE_peak        NR 0.7871900826
9427              L1   528     TE_peak EAR_close 0.8888888889
9428   Simple_repeat    22     TE_peak EAR_close 0.6285714286
9429              L2   332     TE_peak ESR_close 0.6372360845
9430            <NA>    NA not_TE_peak   LR_open           NA
9431              L2    63     TE_peak        NR 0.4632352941
9432   Simple_repeat    59     TE_peak        NR 1.0000000000
9433             MIR    84     TE_peak        NR 0.5526315789
9434            <NA>    NA not_TE_peak   LR_open           NA
9435              L2    45     TE_peak        NR 0.3947368421
9436              L1   396     TE_peak  EAR_open 0.2173435785
9437            <NA>    NA not_TE_peak        NR           NA
9438       ERVL-MaLR   355     TE_peak        NR 0.6879844961
9439             MIR   135     TE_peak        NR 0.9712230216
9440            <NA>    NA not_TE_peak        NR           NA
9441           Gypsy   228     TE_peak ESR_close 0.8028169014
9442             MIR   235     TE_peak ESR_close 1.0000000000
9443            ERV1    49     TE_peak ESR_close 0.1056034483
9444            <NA>    NA not_TE_peak        NR           NA
9445      hAT-Tip100   438     TE_peak        NR 0.5087108014
9446              L2    50     TE_peak        NR 0.8474576271
9447             LTR   208     TE_peak   LR_open 0.6864686469
9448            ERV1   137     TE_peak   LR_open 1.0000000000
9449            ERV1   107     TE_peak   LR_open 0.8045112782
9450      hAT-Tip100   169     TE_peak  LR_close 0.3876146789
9451              L2   276     TE_peak   LR_open 1.0000000000
9452     hAT-Charlie   215     TE_peak   LR_open 1.0000000000
9453              L2    28     TE_peak   LR_open 1.0000000000
9454             Alu    30     TE_peak   LR_open 0.0970873786
9455              L2   194     TE_peak        NR 0.3094098884
9456              L2    17     TE_peak  LR_close 0.0776255708
9457          hAT-Ac   387     TE_peak  EAR_open 1.0000000000
9458            <NA>    NA not_TE_peak ESR_close           NA
9459              L1   589     TE_peak   not_mrc 0.4124649860
9460    TcMar-Tigger   130     TE_peak   LR_open 0.7926829268
9461              L1    70     TE_peak        NR 1.0000000000
9462              L2   150     TE_peak        NR 1.0000000000
9463              L2   377     TE_peak        NR 0.4343317972
9464      hAT-Tip100    36     TE_peak   LR_open 0.2195121951
9465             MIR   195     TE_peak   LR_open 1.0000000000
9466   Simple_repeat    55     TE_peak        NR 1.0000000000
9467            <NA>    NA not_TE_peak        NR           NA
9468     hAT-Charlie   122     TE_peak  LR_close 0.5545454545
9469              L2   294     TE_peak  LR_close 0.9607843137
9470       ERVL-MaLR    59     TE_peak        NR 0.5841584158
9471            <NA>    NA not_TE_peak        NR           NA
9472         Unknown    90     TE_peak        NR 0.9574468085
9473       5S-Deu-L2   208     TE_peak        NR 1.0000000000
9474       5S-Deu-L2    51     TE_peak        NR 0.6986301370
9475            <NA>    NA not_TE_peak   not_mrc           NA
9476              L2    74     TE_peak        NR 0.1670428894
9477            <NA>    NA not_TE_peak  LR_close           NA
9478            <NA>    NA not_TE_peak        NR           NA
9479            <NA>    NA not_TE_peak        NR           NA
9480       ERVL-MaLR   141     TE_peak ESR_close 0.7193877551
9481            <NA>    NA not_TE_peak        NR           NA
9482   Simple_repeat   172     TE_peak ESR_close 1.0000000000
9483              L2    56     TE_peak ESR_close 0.2248995984
9484   Simple_repeat    49     TE_peak   not_mrc 1.0000000000
9485       ERVL-MaLR   164     TE_peak EAR_close 0.4593837535
9486              L2    65     TE_peak EAR_close 1.0000000000
9487              L2   112     TE_peak EAR_close 1.0000000000
9488   Simple_repeat     5     TE_peak EAR_close 0.0793650794
9489             Alu    47     TE_peak ESR_close 0.1631944444
9490            <NA>    NA not_TE_peak   LR_open           NA
9491            <NA>    NA not_TE_peak  ESR_open           NA
9492             Alu   166     TE_peak        NR 0.5303514377
9493             Alu   241     TE_peak        NR 0.7953795380
9494            <NA>    NA not_TE_peak  ESR_open           NA
9495            <NA>    NA not_TE_peak  EAR_open           NA
9496              L2   202     TE_peak   LR_open 0.3620071685
9497              L2    93     TE_peak ESR_close 1.0000000000
9498     hAT-Charlie   106     TE_peak  EAR_open 1.0000000000
9499   Simple_repeat    48     TE_peak  EAR_open 1.0000000000
9500   Simple_repeat    40     TE_peak        NR 1.0000000000
9501            <NA>    NA not_TE_peak        NR           NA
9502   Simple_repeat     6     TE_peak   LR_open 1.0000000000
9503   Simple_repeat    30     TE_peak   LR_open 1.0000000000
9504   Simple_repeat    42     TE_peak   LR_open 0.4421052632
9505             Alu   310     TE_peak   LR_open 1.0000000000
9506             MIR   224     TE_peak  ESR_open 1.0000000000
9507            <NA>    NA not_TE_peak        NR           NA
9508            ERVL   419     TE_peak        NR 1.0000000000
9509            <NA>    NA not_TE_peak        NR           NA
9510            <NA>    NA not_TE_peak   LR_open           NA
9511            <NA>    NA not_TE_peak        NR           NA
9512            <NA>    NA not_TE_peak   LR_open           NA
9513             MIR   185     TE_peak        NR 1.0000000000
9514            <NA>    NA not_TE_peak  LR_close           NA
9515            <NA>    NA not_TE_peak ESR_close           NA
9516              L2    31     TE_peak   LR_open 0.4366197183
9517              L2   146     TE_peak   LR_open 1.0000000000
9518              L2   174     TE_peak   LR_open 1.0000000000
9519              L2    52     TE_peak   LR_open 0.5416666667
9520            ERVL   140     TE_peak EAR_close 0.3473945409
9521            <NA>    NA not_TE_peak   LR_open           NA
9522             MIR    94     TE_peak   LR_open 0.8392857143
9523         Unknown   113     TE_peak   LR_open 0.5765306122
9524             Alu   115     TE_peak   LR_open 0.9426229508
9525              L1     2     TE_peak        NR 0.0045146727
9526       ERVL-MaLR   213     TE_peak        NR 0.5298507463
9527       ERVL-MaLR   392     TE_peak   LR_open 1.0000000000
9528            <NA>    NA not_TE_peak        NR           NA
9529       ERVL-MaLR   166     TE_peak   not_mrc 0.5865724382
9530            ERV1   468     TE_peak   not_mrc 0.4427625355
9531             Alu    26     TE_peak   LR_open 0.0925266904
9532   Simple_repeat    64     TE_peak   LR_open 1.0000000000
9533             MIR   223     TE_peak   LR_open 1.0000000000
9534              L1    26     TE_peak        NR 0.0148741419
9535              L1    14     TE_peak        NR 0.0736842105
9536     hAT-Charlie   186     TE_peak   LR_open 1.0000000000
9537            <NA>    NA not_TE_peak EAR_close           NA
9538             MIR    19     TE_peak        NR 0.0900473934
9539              L2   218     TE_peak        NR 1.0000000000
9540              L2   110     TE_peak        NR 1.0000000000
9541            <NA>    NA not_TE_peak        NR           NA
9542            <NA>    NA not_TE_peak ESR_close           NA
9543            <NA>    NA not_TE_peak   LR_open           NA
9544              L2   143     TE_peak  LR_close 1.0000000000
9545            <NA>    NA not_TE_peak   LR_open           NA
9546            ERV1   491     TE_peak   LR_open 0.7565485362
9547            <NA>    NA not_TE_peak   LR_open           NA
9548            <NA>    NA not_TE_peak        NR           NA
9549             Alu    55     TE_peak   not_mrc 0.4104477612
9550             CR1   108     TE_peak   not_mrc 1.0000000000
9551             CR1   473     TE_peak   not_mrc 0.8431372549
9552            <NA>    NA not_TE_peak  LR_close           NA
9553            <NA>    NA not_TE_peak   LR_open           NA
9554            <NA>    NA not_TE_peak        NR           NA
9555             MIR   120     TE_peak   LR_open 1.0000000000
9556      hAT-Tip100   254     TE_peak  LR_close 0.7720364742
9557              L1    33     TE_peak  LR_close 0.2444444444
9558            <NA>    NA not_TE_peak  LR_close           NA
9559       ERVL-MaLR   196     TE_peak        NR 0.5326086957
9560             MIR    41     TE_peak   LR_open 1.0000000000
9561   Simple_repeat    46     TE_peak        NR 1.0000000000
9562              L2   221     TE_peak        NR 0.9692982456
9563            <NA>    NA not_TE_peak        NR           NA
9564              L2   618     TE_peak   not_mrc 0.6539682540
9565   Simple_repeat    13     TE_peak   not_mrc 1.0000000000
9566   Simple_repeat    27     TE_peak   not_mrc 1.0000000000
9567   Simple_repeat     3     TE_peak   not_mrc 0.0909090909
9568            <NA>    NA not_TE_peak ESR_close           NA
9569              L1   783     TE_peak        NR 0.1299153808
9570              L2     2     TE_peak  LR_close 0.0357142857
9571       ERVL-MaLR   379     TE_peak        NR 0.9921465969
9572            <NA>    NA not_TE_peak        NR           NA
9573            <NA>    NA not_TE_peak  LR_close           NA
9574            ERVL   129     TE_peak ESR_close 0.4760147601
9575             MIR    10     TE_peak  LR_close 0.0497512438
9576      hAT-Tip100   178     TE_peak  LR_close 1.0000000000
9577  Low_complexity    49     TE_peak  LR_close 1.0000000000
9578             MIR    94     TE_peak  LR_close 1.0000000000
9579             MIR   106     TE_peak  LR_close 0.4206349206
9580            <NA>    NA not_TE_peak        NR           NA
9581            <NA>    NA not_TE_peak        NR           NA
9582            ERVL   308     TE_peak        NR 0.7113163972
9583              L2   118     TE_peak  ESR_open 1.0000000000
9584              L2    13     TE_peak  ESR_open 0.2280701754
9585            LTR?   156     TE_peak        NR 0.3305084746
9586            <NA>    NA not_TE_peak ESR_close           NA
9587            <NA>    NA not_TE_peak        NR           NA
9588              L2    50     TE_peak        NR 1.0000000000
9589              L2     1     TE_peak        NR 0.0123456790
9590              L1    72     TE_peak   LR_open 0.2562277580
9591       ERVL-MaLR   308     TE_peak   LR_open 1.0000000000
9592              L2   219     TE_peak        NR 0.6697247706
9593     hAT-Charlie    35     TE_peak        NR 0.4268292683
9594            <NA>    NA not_TE_peak EAR_close           NA
9595            <NA>    NA not_TE_peak        NR           NA
9596   Simple_repeat    66     TE_peak  EAR_open 1.0000000000
9597            <NA>    NA not_TE_peak ESR_close           NA
9598              L2   656     TE_peak  ESR_open 0.7522935780
9599              L1   183     TE_peak        NR 0.3588235294
9600       ERVL-MaLR   190     TE_peak    ESR_OC 0.7723577236
9601       ERVL-MaLR   175     TE_peak    ESR_OC 1.0000000000
9602              L1   397     TE_peak   LR_open 0.8941441441
9603       ERVL-MaLR   420     TE_peak        NR 0.7567567568
9604             Alu    81     TE_peak   LR_open 0.2822299652
9605           Gypsy   192     TE_peak   LR_open 1.0000000000
9606     hAT-Charlie   336     TE_peak   LR_open 1.0000000000
9607           Gypsy   165     TE_peak   LR_open 0.3819444444
9608              L2   440     TE_peak  ESR_open 1.0000000000
9609              L1   886     TE_peak        NR 0.3828867761
9610            <NA>    NA not_TE_peak   LR_open           NA
9611       ERVL-MaLR   372     TE_peak EAR_close 0.7395626243
9612   Simple_repeat    73     TE_peak   not_mrc 0.6033057851
9613            <NA>    NA not_TE_peak        NR           NA
9614     hAT-Charlie    37     TE_peak   LR_open 0.1497975709
9615       ERVL-MaLR   382     TE_peak   LR_open 1.0000000000
9616    TcMar-Tigger   235     TE_peak   LR_open 1.0000000000
9617             MIR    47     TE_peak   LR_open 1.0000000000
9618            ERV1    53     TE_peak        NR 0.4308943089
9619            ERV1    75     TE_peak        NR 0.3099173554
9620            <NA>    NA not_TE_peak   LR_open           NA
9621             Alu    32     TE_peak   LR_open 0.1163636364
9622   Simple_repeat     5     TE_peak        NR 0.1666666667
9623   Simple_repeat    38     TE_peak        NR 0.7450980392
9624             MIR   103     TE_peak        NR 1.0000000000
9625             MIR   230     TE_peak        NR 1.0000000000
9626     hAT-Charlie   150     TE_peak        NR 1.0000000000
9627             MIR    62     TE_peak        NR 0.4397163121
9628   Simple_repeat    80     TE_peak        NR 1.0000000000
9629  Low_complexity    30     TE_peak        NR 1.0000000000
9630             MIR   153     TE_peak        NR 1.0000000000
9631             MIR   119     TE_peak EAR_close 0.6685393258
9632            ERV1   587     TE_peak EAR_close 1.0000000000
9633             Alu    32     TE_peak   LR_open 0.1226053640
9634            ERV1   640     TE_peak        NR 0.8432147563
9635            ERV1   523     TE_peak        NR 0.6286057692
9636            ERV1   222     TE_peak        NR 0.2668269231
9637    TcMar-Tigger    41     TE_peak        NR 1.0000000000
9638            ERV1    53     TE_peak        NR 0.0254807692
9639            ERV1   357     TE_peak        NR 0.6490909091
9640             Alu    36     TE_peak        NR 0.1208053691
9641            <NA>    NA not_TE_peak  LR_close           NA
9642             Alu    48     TE_peak   LR_open 0.1490683230
9643         Dong-R4    94     TE_peak   LR_open 1.0000000000
9644              L1    59     TE_peak   LR_open 1.0000000000
9645            ERV1   127     TE_peak   LR_open 0.3702623907
9646  Low_complexity    50     TE_peak        NR 1.0000000000
9647              L2   148     TE_peak   LR_open 1.0000000000
9648              L2    44     TE_peak   LR_open 1.0000000000
9649            ERVL   356     TE_peak        NR 0.6202090592
9650              L2    20     TE_peak        NR 1.0000000000
9651             Alu   109     TE_peak        NR 0.4144486692
9652   Simple_repeat    18     TE_peak        NR 1.0000000000
9653             MIR   145     TE_peak        NR 1.0000000000
9654        RTE-BovB    76     TE_peak        NR 1.0000000000
9655   Simple_repeat    40     TE_peak        NR 1.0000000000
9656   Simple_repeat    41     TE_peak        NR 1.0000000000
9657  Low_complexity    53     TE_peak        NR 1.0000000000
9658            <NA>    NA not_TE_peak  ESR_open           NA
9659            <NA>    NA not_TE_peak   LR_open           NA
9660              L2   192     TE_peak        NR 0.5925925926
9661   Simple_repeat    22     TE_peak   LR_open 0.7333333333
9662             MIR   193     TE_peak        NR 1.0000000000
9663            <NA>    NA not_TE_peak  LR_close           NA
9664            <NA>    NA not_TE_peak    ESR_OC           NA
9665       ERVL-MaLR   232     TE_peak ESR_close 0.5110132159
9666   Simple_repeat    46     TE_peak ESR_close 1.0000000000
9667   Simple_repeat    51     TE_peak ESR_close 1.0000000000
9668      hAT-Tip100    80     TE_peak   not_mrc 1.0000000000
9669              L2    39     TE_peak        NR 0.2785714286
9670             MIR   166     TE_peak        NR 1.0000000000
9671              L2    84     TE_peak        NR 1.0000000000
9672            <NA>    NA not_TE_peak        NR           NA
9673            <NA>    NA not_TE_peak EAR_close           NA
9674             Alu   129     TE_peak   LR_open 0.3944954128
9675              L2    78     TE_peak   LR_open 1.0000000000
9676  Low_complexity    37     TE_peak   LR_open 1.0000000000
9677             MIR    51     TE_peak        NR 1.0000000000
9678   Simple_repeat    29     TE_peak        NR 1.0000000000
9679             MIR   220     TE_peak        NR 1.0000000000
9680    TcMar-Tigger   107     TE_peak        NR 1.0000000000
9681              L2   122     TE_peak        NR 0.9312977099
9682     hAT-Charlie   191     TE_peak        NR 1.0000000000
9683              L1   170     TE_peak        NR 1.0000000000
9684   Simple_repeat    60     TE_peak        NR 1.0000000000
9685   Simple_repeat    28     TE_peak        NR 1.0000000000
9686     hAT-Charlie    31     TE_peak   LR_open 0.1856287425
9687   Simple_repeat    37     TE_peak   LR_open 1.0000000000
9688            ERV1    63     TE_peak   LR_open 0.1536585366
9689            <NA>    NA not_TE_peak        NR           NA
9690            <NA>    NA not_TE_peak  LR_close           NA
9691            <NA>    NA not_TE_peak        NR           NA
9692            <NA>    NA not_TE_peak        NR           NA
9693             Alu   100     TE_peak   LR_open 0.3236245955
9694            <NA>    NA not_TE_peak   LR_open           NA
9695            <NA>    NA not_TE_peak   LR_open           NA
9696   Simple_repeat    55     TE_peak        NR 1.0000000000
9697             Alu   134     TE_peak        NR 1.0000000000
9698              L2    86     TE_peak        NR 1.0000000000
9699             MIR    99     TE_peak   not_mrc 0.4177215190
9700     hAT-Charlie   116     TE_peak   not_mrc 1.0000000000
9701              L2   126     TE_peak   not_mrc 1.0000000000
9702            <NA>    NA not_TE_peak   LR_open           NA
9703              L2   134     TE_peak  EAR_open 1.0000000000
9704              L2    96     TE_peak  EAR_open 1.0000000000
9705   Simple_repeat    36     TE_peak  EAR_open 1.0000000000
9706              L2    59     TE_peak  EAR_open 1.0000000000
9707             MIR    86     TE_peak        NR 0.6231884058
9708     hAT-Charlie    85     TE_peak  LR_close 0.8018867925
9709              L2   333     TE_peak        NR 1.0000000000
9710              L1    82     TE_peak        NR 1.0000000000
9711              L1    65     TE_peak        NR 0.3110047847
9712              L1    84     TE_peak        NR 0.2434782609
9713              L1   374     TE_peak   LR_open 0.4109890110
9714              L1   316     TE_peak   LR_open 0.3082926829
9715       ERVL-MaLR   431     TE_peak        NR 1.0000000000
9716     hAT-Charlie    55     TE_peak        NR 0.5045871560
9717              L2   103     TE_peak        NR 0.5309278351
9718              L2   183     TE_peak        NR 1.0000000000
9719              L1   407     TE_peak   LR_open 0.7650375940
9720             MIR   123     TE_peak        NR 0.7500000000
9721   Simple_repeat    66     TE_peak        NR 1.0000000000
9722   Simple_repeat    29     TE_peak        NR 1.0000000000
9723  Low_complexity    53     TE_peak        NR 1.0000000000
9724             Alu    66     TE_peak   LR_open 0.2200000000
9725            <NA>    NA not_TE_peak        NR           NA
9726            <NA>    NA not_TE_peak  ESR_open           NA
9727            <NA>    NA not_TE_peak        NR           NA
9728             CR1    53     TE_peak        NR 0.6973684211
9729            <NA>    NA not_TE_peak  EAR_open           NA
9730   Simple_repeat    33     TE_peak        NR 1.0000000000
9731   Simple_repeat    36     TE_peak        NR 1.0000000000
9732   Simple_repeat    40     TE_peak        NR 1.0000000000
9733              L1    78     TE_peak        NR 1.0000000000
9734              L2   144     TE_peak   LR_open 0.7309644670
9735             MIR    92     TE_peak   LR_open 1.0000000000
9736            <NA>    NA not_TE_peak        NR           NA
9737            <NA>    NA not_TE_peak   LR_open           NA
9738             MIR    75     TE_peak        NR 1.0000000000
9739             CR1    25     TE_peak        NR 0.4098360656
9740            ERVL   212     TE_peak        NR 1.0000000000
9741            ERVL    28     TE_peak        NR 0.2258064516
9742            <NA>    NA not_TE_peak    ESR_OC           NA
9743            <NA>    NA not_TE_peak        NR           NA
9744            <NA>    NA not_TE_peak   LR_open           NA
9745            <NA>    NA not_TE_peak   not_mrc           NA
9746            <NA>    NA not_TE_peak        NR           NA
9747             Alu    67     TE_peak   LR_open 0.2196721311
9748  Low_complexity    44     TE_peak        NR 1.0000000000
9749   Simple_repeat    83     TE_peak        NR 1.0000000000
9750            ERV1   251     TE_peak   LR_open 0.7233429395
9751            <NA>    NA not_TE_peak        NR           NA
9752            <NA>    NA not_TE_peak  EAR_open           NA
9753             MIR   181     TE_peak EAR_close 1.0000000000
9754   Simple_repeat    22     TE_peak        NR 1.0000000000
9755            ERVL   156     TE_peak  LR_close 0.3929471033
9756             MIR   129     TE_peak  LR_close 1.0000000000
9757            ERV1   164     TE_peak  LR_close 0.2586750789
9758            <NA>    NA not_TE_peak   LR_open           NA
9759            <NA>    NA not_TE_peak        NR           NA
9760            <NA>    NA not_TE_peak        NR           NA
9761        RTE-BovB    50     TE_peak        NR 0.3164556962
9762   Simple_repeat    46     TE_peak        NR 1.0000000000
9763   Simple_repeat    47     TE_peak        NR 1.0000000000
9764           Gypsy    84     TE_peak   LR_open 0.5316455696
9765             MIR   218     TE_peak   LR_open 1.0000000000
9766     hAT-Charlie   137     TE_peak   LR_open 1.0000000000
9767             Alu    77     TE_peak   LR_open 0.2720848057
9768     hAT-Charlie    72     TE_peak   LR_open 1.0000000000
9769              L2   180     TE_peak   LR_open 0.4864864865
9770            <NA>    NA not_TE_peak        NR           NA
9771            <NA>    NA not_TE_peak  ESR_open           NA
9772            <NA>    NA not_TE_peak        NR           NA
9773             CR1   171     TE_peak        NR 1.0000000000
9774     hAT-Charlie    10     TE_peak        NR 0.0432900433
9775            <NA>    NA not_TE_peak        NR           NA
9776            <NA>    NA not_TE_peak        NR           NA
9777   Simple_repeat   119     TE_peak   LR_open 1.0000000000
9778        tRNA-RTE    92     TE_peak   LR_open 1.0000000000
9779   Simple_repeat    19     TE_peak   LR_open 1.0000000000
9780              L2    93     TE_peak  ESR_open 1.0000000000
9781   Simple_repeat    32     TE_peak   LR_open 1.0000000000
9782             MIR    40     TE_peak   LR_open 0.2116402116
9783             MIR    50     TE_peak        NR 0.4807692308
9784   Simple_repeat     8     TE_peak        NR 1.0000000000
9785   Simple_repeat    31     TE_peak        NR 1.0000000000
9786   Simple_repeat    39     TE_peak        NR 1.0000000000
9787  Low_complexity    53     TE_peak        NR 1.0000000000
9788     hAT-Charlie   157     TE_peak        NR 1.0000000000
9789            <NA>    NA not_TE_peak  ESR_open           NA
9790   Simple_repeat    67     TE_peak  ESR_open 1.0000000000
9791            <NA>    NA not_TE_peak EAR_close           NA
9792            <NA>    NA not_TE_peak   LR_open           NA
9793            <NA>    NA not_TE_peak   LR_open           NA
9794            <NA>    NA not_TE_peak  LR_close           NA
9795             MIR   100     TE_peak        NR 0.7299270073
9796            <NA>    NA not_TE_peak  LR_close           NA
9797              L2    99     TE_peak   LR_open 1.0000000000
9798             MIR   146     TE_peak   LR_open 1.0000000000
9799             MIR   117     TE_peak   LR_open 0.9590163934
9800             Alu   272     TE_peak        NR 1.0000000000
9801             Alu     8     TE_peak        NR 0.0370370370
9802            <NA>    NA not_TE_peak  EAR_open           NA
9803             MIR    72     TE_peak        NR 0.5255474453
9804              L2    35     TE_peak   LR_open 1.0000000000
9805             MIR    37     TE_peak   LR_open 0.1497975709
9806              L1   266     TE_peak  LR_close 0.0709522539
9807              L1   384     TE_peak   LR_open 0.1024273140
9808  Low_complexity    47     TE_peak   LR_open 1.0000000000
9809             CR1    53     TE_peak        NR 0.5888888889
9810             MIR   166     TE_peak EAR_close 0.7757009346
9811              L2    26     TE_peak EAR_close 0.3132530120
9812       ERVL-MaLR   414     TE_peak        NR 0.9345372460
9813            ERVL   156     TE_peak        NR 0.3561643836
9814             MIR   225     TE_peak        NR 1.0000000000
9815             MIR    95     TE_peak        NR 1.0000000000
9816            ERVL   284     TE_peak  LR_close 0.1338360038
9817              L2    91     TE_peak  EAR_open 1.0000000000
9818             MIR   142     TE_peak        NR 1.0000000000
9819             MIR     9     TE_peak        NR 0.1097560976
9820            ERVL   111     TE_peak        NR 0.3546325879
9821            ERVL   240     TE_peak        NR 0.0485535100
9822            <NA>    NA not_TE_peak        NR           NA
9823             Alu    55     TE_peak  LR_close 1.0000000000
9824            ERV1   330     TE_peak        NR 0.8312342569
9825            ERV1   120     TE_peak        NR 0.7547169811
9826              L2   303     TE_peak        NR 0.5033222591
9827           Gypsy   157     TE_peak        NR 1.0000000000
9828            ERVK    57     TE_peak   LR_open 1.0000000000
9829   Simple_repeat    37     TE_peak   LR_open 1.0000000000
9830            <NA>    NA not_TE_peak        NR           NA
9831            <NA>    NA not_TE_peak ESR_close           NA
9832      hAT-Tip100   356     TE_peak   LR_open 0.6212914485
9833      hAT-Tip100   413     TE_peak  ESR_open 0.3903591682
9834             MIR   134     TE_peak  ESR_open 1.0000000000
9835            ERVL   365     TE_peak ESR_close 0.7765957447
9836   Simple_repeat    26     TE_peak  LR_close 1.0000000000
9837     hAT-Charlie     1     TE_peak  LR_close 0.0061349693
9838            <NA>    NA not_TE_peak        NR           NA
9839            <NA>    NA not_TE_peak   LR_open           NA
9840              L2    79     TE_peak        NR 1.0000000000
9841             MIR   112     TE_peak        NR 1.0000000000
9842    TcMar-Tigger   134     TE_peak  ESR_open 0.5425101215
9843            <NA>    NA not_TE_peak        NR           NA
9844             MIR   104     TE_peak   LR_open 0.5445026178
9845              L1    57     TE_peak EAR_close 0.0396383866
9846             MIR   208     TE_peak        NR 1.0000000000
9847              L2   127     TE_peak        NR 1.0000000000
9848              L2    35     TE_peak        NR 0.5303030303
9849             MIR   124     TE_peak        NR 0.8000000000
9850              L1     7     TE_peak EAR_close 0.0316742081
9851              L1   204     TE_peak EAR_close 0.9026548673
9852             Alu   164     TE_peak EAR_close 0.5342019544
9853              L1    91     TE_peak   LR_open 0.0761506276
9854              L1    80     TE_peak   LR_open 1.0000000000
9855           RTE-X   358     TE_peak   LR_open 1.0000000000
9856              L2    70     TE_peak   LR_open 1.0000000000
9857            <NA>    NA not_TE_peak   LR_open           NA
9858             MIR   146     TE_peak        NR 0.9668874172
9859            ERVL   385     TE_peak        NR 1.0000000000
9860  Low_complexity    32     TE_peak        NR 1.0000000000
9861     hAT-Charlie    66     TE_peak   LR_open 0.4925373134
9862     hAT-Charlie    65     TE_peak   LR_open 0.2579365079
9863       ERVL-MaLR   254     TE_peak        NR 0.6997245179
9864              L1    31     TE_peak        NR 0.3690476190
9865             Alu   131     TE_peak  ESR_open 1.0000000000
9866             SVA   118     TE_peak  ESR_open 0.0637493247
9867   Simple_repeat    42     TE_peak  ESR_open 1.0000000000
9868             Alu   202     TE_peak  ESR_open 1.0000000000
9869       ERVL-MaLR   318     TE_peak        NR 0.5618374558
9870   Simple_repeat    71     TE_peak        NR 1.0000000000
9871              L1   498     TE_peak        NR 0.3353535354
9872            ERVL     2     TE_peak  LR_close 0.0333333333
9873            ERVL   252     TE_peak  LR_close 0.9032258065
9874             Alu   166     TE_peak        NR 1.0000000000
9875    TcMar-Tigger   244     TE_peak ESR_close 0.2592986185
9876             Alu   295     TE_peak ESR_close 1.0000000000
9877    TcMar-Tigger    28     TE_peak ESR_close 0.1081081081
9878            ERVL   439     TE_peak        NR 0.8283018868
9879             Alu    90     TE_peak        NR 0.3202846975
9880             CR1   211     TE_peak        NR 0.4228456914
9881        tRNA-RTE    78     TE_peak        NR 0.3861386139
9882              L2    95     TE_peak        NR 0.8407079646
9883      hAT-Tip100   101     TE_peak        NR 0.8416666667
9884            <NA>    NA not_TE_peak        NR           NA
9885            <NA>    NA not_TE_peak   LR_open           NA
9886            <NA>    NA not_TE_peak        NR           NA
9887            <NA>    NA not_TE_peak   LR_open           NA
9888             hAT   118     TE_peak        NR 0.6178010471
9889             MIR    60     TE_peak        NR 0.4000000000
9890            <NA>    NA not_TE_peak  LR_close           NA
9891             MIR    49     TE_peak        NR 0.3121019108
9892             MIR   104     TE_peak        NR 0.4684684685
9893              L2   339     TE_peak        NR 0.9237057221
9894           Gypsy   409     TE_peak        NR 0.5353403141
9895             MIR   123     TE_peak        NR 1.0000000000
9896             MIR   194     TE_peak        NR 1.0000000000
9897            <NA>    NA not_TE_peak        NR           NA
9898   Simple_repeat    72     TE_peak        NR 1.0000000000
9899  Low_complexity    30     TE_peak        NR 1.0000000000
9900   Simple_repeat    36     TE_peak        NR 1.0000000000
9901   Simple_repeat    72     TE_peak        NR 1.0000000000
9902  Low_complexity    40     TE_peak        NR 1.0000000000
9903  Low_complexity    79     TE_peak        NR 1.0000000000
9904  Low_complexity    22     TE_peak  LR_close 0.5789473684
9905            DNA?   167     TE_peak        NR 1.0000000000
9906             MIR   202     TE_peak   LR_open 1.0000000000
9907   Simple_repeat    29     TE_peak   LR_open 1.0000000000
9908             MIR   101     TE_peak   LR_open 0.9711538462
9909            <NA>    NA not_TE_peak   LR_open           NA
9910            <NA>    NA not_TE_peak   LR_open           NA
9911            <NA>    NA not_TE_peak        NR           NA
9912              L1    19     TE_peak  LR_close 0.2043010753
9913              L1    83     TE_peak  LR_close 0.2677419355
9914             MIR   173     TE_peak   LR_open 0.8650000000
9915            <NA>    NA not_TE_peak        NR           NA
9916            <NA>    NA not_TE_peak        NR           NA
9917            <NA>    NA not_TE_peak        NR           NA
9918            <NA>    NA not_TE_peak        NR           NA
9919            <NA>    NA not_TE_peak   LR_open           NA
9920            <NA>    NA not_TE_peak   LR_open           NA
9921            <NA>    NA not_TE_peak        NR           NA
9922              L2    29     TE_peak        NR 0.2589285714
9923  Low_complexity    18     TE_peak EAR_close 0.6666666667
9924              L2     6     TE_peak   LR_open 0.0104347826
9925              L2   161     TE_peak   LR_open 1.0000000000
9926             MIR    66     TE_peak        NR 1.0000000000
9927        RTE-BovB    95     TE_peak        NR 1.0000000000
9928              L2   250     TE_peak        NR 1.0000000000
9929             MIR    27     TE_peak        NR 0.2093023256
9930   Simple_repeat    49     TE_peak   LR_open 1.0000000000
9931              L2   123     TE_peak        NR 1.0000000000
9932            <NA>    NA not_TE_peak        NR           NA
9933              L2   108     TE_peak        NR 1.0000000000
9934              L2   307     TE_peak  ESR_open 0.9029411765
9935            <NA>    NA not_TE_peak   LR_open           NA
9936   Simple_repeat    36     TE_peak  EAR_open 1.0000000000
9937    TcMar-Tigger   274     TE_peak  EAR_open 1.0000000000
9938             MIR    93     TE_peak  EAR_open 1.0000000000
9939            <NA>    NA not_TE_peak        NR           NA
9940            <NA>    NA not_TE_peak        NR           NA
9941            <NA>    NA not_TE_peak  ESR_open           NA
9942            <NA>    NA not_TE_peak  ESR_open           NA
9943            <NA>    NA not_TE_peak ESR_close           NA
9944            <NA>    NA not_TE_peak  LR_close           NA
9945            <NA>    NA not_TE_peak        NR           NA
9946     hAT-Charlie   157     TE_peak  LR_close 1.0000000000
9947   Simple_repeat    30     TE_peak  LR_close 1.0000000000
9948   Simple_repeat    21     TE_peak  LR_close 1.0000000000
9949            LTR?   159     TE_peak        NR 1.0000000000
9950   Simple_repeat    30     TE_peak        NR 1.0000000000
9951       ERVL-MaLR   288     TE_peak   LR_open 0.7254408060
9952            <NA>    NA not_TE_peak        NR           NA
9953            ERVL   323     TE_peak        NR 0.7083333333
9954   Simple_repeat    77     TE_peak        NR 1.0000000000
9955   Simple_repeat    30     TE_peak        NR 1.0000000000
9956            <NA>    NA not_TE_peak  ESR_open           NA
9957            <NA>    NA not_TE_peak        NR           NA
9958            <NA>    NA not_TE_peak        NR           NA
9959            <NA>    NA not_TE_peak ESR_close           NA
9960              L2   712     TE_peak   LR_open 0.5812244898
9961             MIR   110     TE_peak   LR_open 0.4471544715
9962            <NA>    NA not_TE_peak EAR_close           NA
9963            <NA>    NA not_TE_peak        NR           NA
9964            <NA>    NA not_TE_peak   LR_open           NA
9965   Simple_repeat   459     TE_peak  ESR_open 0.7574257426
9966            <NA>    NA not_TE_peak        NR           NA
9967            <NA>    NA not_TE_peak  LR_close           NA
9968    TcMar-Tigger   304     TE_peak        NR 0.4662576687
9969       ERVL-MaLR   342     TE_peak        NR 0.9144385027
9970     hAT-Charlie    44     TE_peak   LR_open 0.2528735632
9971            <NA>    NA not_TE_peak        NR           NA
9972  Low_complexity    45     TE_peak        NR 1.0000000000
9973   Simple_repeat    54     TE_peak        NR 1.0000000000
9974   Simple_repeat    39     TE_peak        NR 1.0000000000
9975              L1   149     TE_peak    ESR_OC 0.9738562092
9976    TcMar-Tigger   315     TE_peak    ESR_OC 0.9874608150
9977              L2   127     TE_peak  ESR_open 1.0000000000
9978            ERV1   192     TE_peak  ESR_open 1.0000000000
9979           RTE-X   219     TE_peak  ESR_open 1.0000000000
9980             MIR   136     TE_peak        NR 0.8831168831
9981             Alu   142     TE_peak   LR_open 0.4913494810
9982              L1   191     TE_peak   LR_open 1.0000000000
9983              L1   833     TE_peak   LR_open 0.7956064947
9984             Alu   305     TE_peak   LR_open 1.0000000000
9985             Alu    38     TE_peak   LR_open 0.2483660131
9986             Alu   160     TE_peak   LR_open 1.0000000000
9987            ERVL   713     TE_peak   LR_open 0.9332460733
9988            ERV1   492     TE_peak   LR_open 0.8754448399
9989             Alu   306     TE_peak        NR 1.0000000000
9990            <NA>    NA not_TE_peak  EAR_open           NA
9991              L2   394     TE_peak        NR 0.7163636364
9992            <NA>    NA not_TE_peak        NR           NA
9993     hAT-Charlie   121     TE_peak        NR 0.8897058824
9994            ERV1   115     TE_peak        NR 0.3034300792
9995   Simple_repeat    29     TE_peak        NR 1.0000000000
9996             MIR    89     TE_peak        NR 0.4027149321
9997             Alu   152     TE_peak        NR 0.5241379310
9998   Simple_repeat    28     TE_peak        NR 1.0000000000
9999              L2   203     TE_peak        NR 1.0000000000
10000            Alu   106     TE_peak        NR 1.0000000000
10001  Simple_repeat    28     TE_peak        NR 1.0000000000
10002            Alu    75     TE_peak        NR 0.2199413490
10003            LTR    89     TE_peak        NR 0.4278846154
10004             L1   110     TE_peak        NR 1.0000000000
10005    hAT-Charlie    11     TE_peak        NR 0.1089108911
10006  Simple_repeat    35     TE_peak        NR 1.0000000000
10007  Simple_repeat    40     TE_peak        NR 1.0000000000
10008 Low_complexity    55     TE_peak        NR 1.0000000000
10009  Simple_repeat    44     TE_peak        NR 1.0000000000
10010  Simple_repeat    24     TE_peak        NR 1.0000000000
10011 Low_complexity    62     TE_peak  LR_close 1.0000000000
10012  Simple_repeat    42     TE_peak  LR_close 1.0000000000
10013 Low_complexity    37     TE_peak  LR_close 1.0000000000
10014           ERVK    15     TE_peak ESR_close 0.0154479918
10015           ERVK   158     TE_peak ESR_close 0.9753086420
10016             L1   104     TE_peak ESR_close 0.4792626728
10017           <NA>    NA not_TE_peak   LR_open           NA
10018           <NA>    NA not_TE_peak  LR_close           NA
10019           <NA>    NA not_TE_peak        NR           NA
10020           <NA>    NA not_TE_peak   LR_open           NA
10021    hAT-Charlie    36     TE_peak        NR 0.1090909091
10022            MIR   128     TE_peak    ESR_OC 0.5182186235
10023           <NA>    NA not_TE_peak        NR           NA
10024           <NA>    NA not_TE_peak   LR_open           NA
10025  Simple_repeat    63     TE_peak        NR 1.0000000000
10026           ERVL   149     TE_peak  EAR_open 1.0000000000
10027    hAT-Charlie   156     TE_peak  EAR_open 1.0000000000
10028             L1   166     TE_peak  EAR_open 1.0000000000
10029  Simple_repeat    27     TE_peak  EAR_open 1.0000000000
10030  Simple_repeat    22     TE_peak  EAR_open 1.0000000000
10031 Low_complexity    43     TE_peak        NR 1.0000000000
10032           <NA>    NA not_TE_peak  EAR_open           NA
10033   TcMar-Tigger   384     TE_peak        NR 0.1595346905
10034           <NA>    NA not_TE_peak  LR_close           NA
10035           <NA>    NA not_TE_peak EAR_close           NA
10036            MIR    51     TE_peak        NR 0.3541666667
10037            MIR   212     TE_peak        NR 1.0000000000
10038            MIR   151     TE_peak        NR 0.9679487179
10039             L1   371     TE_peak  EAR_open 0.0545748750
10040           <NA>    NA not_TE_peak EAR_close           NA
10041  Simple_repeat    53     TE_peak  LR_close 1.0000000000
10042            MIR    19     TE_peak  LR_close 0.0822510823
10043             L2    65     TE_peak        NR 0.5327868852
10044           <NA>    NA not_TE_peak        NR           NA
10045  Simple_repeat    35     TE_peak        NR 1.0000000000
10046  Simple_repeat    62     TE_peak        NR 1.0000000000
10047           <NA>    NA not_TE_peak        NR           NA
10048            MIR   122     TE_peak   LR_open 0.5727699531
10049             L1   170     TE_peak   LR_open 1.0000000000
10050            CR1    30     TE_peak   LR_open 0.3225806452
10051           <NA>    NA not_TE_peak        NR           NA
10052             L2   193     TE_peak  ESR_open 1.0000000000
10053           ERVL    65     TE_peak        NR 0.1009316770
10054    hAT-Charlie   200     TE_peak   LR_open 1.0000000000
10055             L2    90     TE_peak   LR_open 1.0000000000
10056           <NA>    NA not_TE_peak        NR           NA
10057           <NA>    NA not_TE_peak        NR           NA
10058             L2    84     TE_peak        NR 0.3620689655
10059            MIR   234     TE_peak   LR_open 1.0000000000
10060      ERVL-MaLR   376     TE_peak   LR_open 1.0000000000
10061           ERV1   484     TE_peak        NR 0.2640480087
10062            MIR    31     TE_peak        NR 0.2000000000
10063           ERVL   130     TE_peak        NR 0.1793103448
10064  Simple_repeat    35     TE_peak        NR 1.0000000000
10065           <NA>    NA not_TE_peak        NR           NA
10066            MIR   155     TE_peak        NR 0.7175925926
10067             L2   208     TE_peak        NR 1.0000000000
10068           <NA>    NA not_TE_peak        NR           NA
10069             L1   300     TE_peak        NR 0.4347826087
10070            MIR   155     TE_peak   not_mrc 1.0000000000
10071     hAT-Tip100   130     TE_peak   not_mrc 0.8074534161
10072            Alu    44     TE_peak        NR 0.1423948220
10073            MIR    70     TE_peak        NR 1.0000000000
10074      5S-Deu-L2    96     TE_peak        NR 1.0000000000
10075  Simple_repeat    35     TE_peak        NR 1.0000000000
10076           <NA>    NA not_TE_peak   LR_open           NA
10077            MIR    56     TE_peak        NR 0.2666666667
10078             L2    68     TE_peak        NR 1.0000000000
10079   TcMar-Tigger   385     TE_peak        NR 0.3130081301
10080           <NA>    NA not_TE_peak   LR_open           NA
10081  Simple_repeat    52     TE_peak        NR 1.0000000000
10082            Alu    84     TE_peak  LR_close 0.3032490975
10083           <NA>    NA not_TE_peak        NR           NA
10084            Alu    77     TE_peak  ESR_open 0.2566666667
10085            MIR    41     TE_peak        NR 0.2928571429
10086           <NA>    NA not_TE_peak   LR_open           NA
10087           <NA>    NA not_TE_peak        NR           NA
10088    hAT-Charlie   151     TE_peak  LR_close 0.7224880383
10089           <NA>    NA not_TE_peak        NR           NA
10090    hAT-Charlie   127     TE_peak   LR_open 1.0000000000
10091    hAT-Charlie   112     TE_peak   LR_open 1.0000000000
10092           <NA>    NA not_TE_peak  LR_close           NA
10093            Alu    44     TE_peak   LR_open 0.1456953642
10094             L2    86     TE_peak        NR 0.6370370370
10095            Alu     1     TE_peak   LR_open 0.0032154341
10096   TcMar-Tigger   117     TE_peak   LR_open 1.0000000000
10097      ERVL-MaLR   293     TE_peak        NR 0.8300283286
10098            MIR    73     TE_peak ESR_close 0.4294117647
10099    hAT-Charlie    76     TE_peak        NR 1.0000000000
10100            Alu    56     TE_peak        NR 0.1830065359
10101           <NA>    NA not_TE_peak        NR           NA
10102             L2   319     TE_peak  ESR_open 0.7975000000
10103          RTE-X   125     TE_peak        NR 0.5555555556
10104             L2   131     TE_peak        NR 1.0000000000
10105           <NA>    NA not_TE_peak  LR_close           NA
10106           <NA>    NA not_TE_peak        NR           NA
10107            Alu   284     TE_peak   LR_open 1.0000000000
10108           ERV1   598     TE_peak   LR_open 0.6500000000
10109           ERVL    98     TE_peak        NR 0.8166666667
10110            CR1    10     TE_peak        NR 0.1851851852
10111             L2    61     TE_peak        NR 0.1986970684
10112           <NA>    NA not_TE_peak        NR           NA
10113             L1   446     TE_peak        NR 0.9195876289
10114            Alu    33     TE_peak        NR 0.1918604651
10115             L2   121     TE_peak        NR 1.0000000000
10116           <NA>    NA not_TE_peak        NR           NA
10117           <NA>    NA not_TE_peak        NR           NA
10118  Simple_repeat    45     TE_peak        NR 1.0000000000
10119     hAT-Tip100    96     TE_peak        NR 1.0000000000
10120      ERVL-MaLR   162     TE_peak        NR 0.4807121662
10121           <NA>    NA not_TE_peak ESR_close           NA
10122           <NA>    NA not_TE_peak ESR_close           NA
10123           <NA>    NA not_TE_peak        NR           NA
10124             L1   502     TE_peak        NR 0.4674115456
10125            MIR    10     TE_peak   LR_open 0.0602409639
10126           <NA>    NA not_TE_peak        NR           NA
10127             L2    28     TE_peak   LR_open 0.1497326203
10128     hAT-Tip100   612     TE_peak   LR_open 0.8869565217
10129           <NA>    NA not_TE_peak        NR           NA
10130           <NA>    NA not_TE_peak        NR           NA
10131             L2   119     TE_peak        NR 1.0000000000
10132      5S-Deu-L2   161     TE_peak  LR_close 1.0000000000
10133            MIR   110     TE_peak  LR_close 1.0000000000
10134           <NA>    NA not_TE_peak        NR           NA
10135           <NA>    NA not_TE_peak        NR           NA
10136           <NA>    NA not_TE_peak        NR           NA
10137  Simple_repeat    26     TE_peak   LR_open 0.6666666667
10138  Simple_repeat    44     TE_peak   LR_open 1.0000000000
10139 Low_complexity    43     TE_peak   LR_open 1.0000000000
10140           <NA>    NA not_TE_peak   LR_open           NA
10141             L1    60     TE_peak        NR 0.0211118930
10142            MIR   219     TE_peak        NR 1.0000000000
10143           <NA>    NA not_TE_peak   LR_open           NA
10144  Simple_repeat    43     TE_peak        NR 1.0000000000
10145            Alu    14     TE_peak        NR 0.1093750000
10146             L2    72     TE_peak        NR 1.0000000000
10147           ERV1   162     TE_peak  LR_close 0.3785046729
10148           ERV1   633     TE_peak        NR 0.9308823529
10149            Alu   255     TE_peak ESR_close 1.0000000000
10150             L1    54     TE_peak ESR_close 0.1888111888
10151           ERV1    84     TE_peak   LR_open 0.7304347826
10152            Alu   176     TE_peak   LR_open 1.0000000000
10153             L2   299     TE_peak   LR_open 0.4265335235
10154             L1   113     TE_peak        NR 1.0000000000
10155             L1   341     TE_peak        NR 0.2699920823
10156            MIR     7     TE_peak   not_mrc 0.0714285714
10157           <NA>    NA not_TE_peak        NR           NA
10158  hAT-Blackjack    37     TE_peak  LR_close 0.1042253521
10159 Low_complexity    75     TE_peak EAR_close 1.0000000000
10160    hAT-Charlie    30     TE_peak EAR_close 0.1754385965
10161           ERV1   300     TE_peak        NR 0.5692599620
10162            MIR    16     TE_peak        NR 0.1415929204
10163             L2    44     TE_peak        NR 0.6666666667
10164           ERV1   112     TE_peak        NR 1.0000000000
10165           ERV1     9     TE_peak        NR 0.0278637771
10166           <NA>    NA not_TE_peak        NR           NA
10167            hAT    90     TE_peak   LR_open 1.0000000000
10168             L2   318     TE_peak   LR_open 0.5213114754
10169           <NA>    NA not_TE_peak        NR           NA
10170             L2    59     TE_peak        NR 0.1435523114
10171             L2   369     TE_peak   not_mrc 0.9000000000
10172  Simple_repeat    31     TE_peak   not_mrc 1.0000000000
10173  Simple_repeat    36     TE_peak   not_mrc 1.0000000000
10174            MIR   100     TE_peak        NR 1.0000000000
10175             L2   380     TE_peak        NR 0.9947643979
10176 Low_complexity    36     TE_peak   not_mrc 1.0000000000
10177             L2   183     TE_peak        NR 0.5069252078
10178            MIR    84     TE_peak        NR 1.0000000000
10179  Simple_repeat    16     TE_peak ESR_close 1.0000000000
10180  Simple_repeat    27     TE_peak ESR_close 1.0000000000
10181  Simple_repeat    22     TE_peak ESR_close 1.0000000000
10182 Low_complexity   113     TE_peak ESR_close 1.0000000000
10183  Simple_repeat    48     TE_peak  LR_close 1.0000000000
10184      ERVL-MaLR   141     TE_peak        NR 0.4051724138
10185           <NA>    NA not_TE_peak  LR_close           NA
10186            MIR    55     TE_peak  LR_close 0.3072625698
10187            MIR    62     TE_peak  LR_close 0.2897196262
10188   TcMar-Tigger   334     TE_peak        NR 0.1412262156
10189             L2   104     TE_peak        NR 0.3823529412
10190  Simple_repeat   101     TE_peak ESR_close 1.0000000000
10191           <NA>    NA not_TE_peak   LR_open           NA
10192           <NA>    NA not_TE_peak   LR_open           NA
10193           <NA>    NA not_TE_peak        NR           NA
10194           <NA>    NA not_TE_peak        NR           NA
10195            Alu    68     TE_peak  LR_close 0.2320819113
10196            Alu   255     TE_peak  LR_close 0.7894736842
10197           <NA>    NA not_TE_peak   LR_open           NA
10198  Simple_repeat    43     TE_peak        NR 1.0000000000
10199           <NA>    NA not_TE_peak        NR           NA
10200             L2    65     TE_peak        NR 0.6989247312
10201            MIR   148     TE_peak        NR 1.0000000000
10202           ERV1   232     TE_peak ESR_close 0.3630672926
10203       RTE-BovB    74     TE_peak ESR_close 0.4683544304
10204           <NA>    NA not_TE_peak   LR_open           NA
10205            MIR   151     TE_peak        NR 0.7743589744
10206           <NA>    NA not_TE_peak        NR           NA
10207             L2    38     TE_peak        NR 0.2500000000
10208             L2   276     TE_peak        NR 0.5009074410
10209            MIR   171     TE_peak        NR 0.7276595745
10210          ERVL?   112     TE_peak   LR_open 0.4827586207
10211             L2    99     TE_peak ESR_close 0.4439461883
10212            MIR    74     TE_peak ESR_close 1.0000000000
10213           <NA>    NA not_TE_peak        NR           NA
10214           <NA>    NA not_TE_peak   LR_open           NA
10215            Alu   220     TE_peak        NR 0.7508532423
10216             L2    45     TE_peak   LR_open 0.4326923077
10217      ERVL-MaLR   135     TE_peak   LR_open 1.0000000000
10218             L2    15     TE_peak ESR_close 0.3000000000
10219           <NA>    NA not_TE_peak        NR           NA
10220           <NA>    NA not_TE_peak        NR           NA
10221           <NA>    NA not_TE_peak ESR_close           NA
10222            MIR   117     TE_peak        NR 1.0000000000
10223  Simple_repeat    54     TE_peak        NR 1.0000000000
10224  Simple_repeat    40     TE_peak        NR 1.0000000000
10225  Simple_repeat    11     TE_peak        NR 1.0000000000
10226            Alu   120     TE_peak   LR_open 1.0000000000
10227            Alu    63     TE_peak        NR 0.2266187050
10228  Simple_repeat    38     TE_peak        NR 1.0000000000
10229            Alu    16     TE_peak        NR 0.0565371025
10230             L2    14     TE_peak ESR_close 0.0818713450
10231            MIR   133     TE_peak ESR_close 1.0000000000
10232            Alu    42     TE_peak ESR_close 0.1333333333
10233            Alu   252     TE_peak        NR 0.8689655172
10234  Simple_repeat    37     TE_peak        NR 1.0000000000
10235  Simple_repeat    29     TE_peak        NR 1.0000000000
10236           <NA>    NA not_TE_peak   LR_open           NA
10237            Alu   261     TE_peak        NR 0.8055555556
10238     hAT-Tip100   327     TE_peak EAR_close 0.5808170515
10239           <NA>    NA not_TE_peak  ESR_open           NA
10240             L1   250     TE_peak        NR 0.2821670429
10241  Simple_repeat    30     TE_peak        NR 1.0000000000
10242             L1    33     TE_peak        NR 1.0000000000
10243   TcMar-Tigger   315     TE_peak        NR 1.0000000000
10244            Alu   159     TE_peak        NR 0.5112540193
10245           <NA>    NA not_TE_peak  LR_close           NA
10246           <NA>    NA not_TE_peak ESR_close           NA
10247           <NA>    NA not_TE_peak        NR           NA
10248           <NA>    NA not_TE_peak        NR           NA
10249            Alu    14     TE_peak  LR_close 0.0492957746
10250           <NA>    NA not_TE_peak   not_mrc           NA
10251             L2   413     TE_peak        NR 0.8343434343
10252           <NA>    NA not_TE_peak   LR_open           NA
10253             L2   222     TE_peak        NR 1.0000000000
10254            MIR   181     TE_peak        NR 0.7869565217
10255            MIR   131     TE_peak  ESR_open 1.0000000000
10256             L2   215     TE_peak  ESR_open 1.0000000000
10257  Simple_repeat    26     TE_peak   LR_open 1.0000000000
10258            MIR    83     TE_peak   LR_open 1.0000000000
10259  Simple_repeat    66     TE_peak   LR_open 1.0000000000
10260           <NA>    NA not_TE_peak   LR_open           NA
10261  Simple_repeat    26     TE_peak   LR_open 1.0000000000
10262             L1   472     TE_peak        NR 0.0825607836
10263           <NA>    NA not_TE_peak EAR_close           NA
10264             L2   368     TE_peak   not_mrc 0.6062602965
10265             L1   722     TE_peak  ESR_open 0.2538677918
10266            MIR   119     TE_peak        NR 1.0000000000
10267            MIR   196     TE_peak        NR 1.0000000000
10268           ERVK   308     TE_peak        NR 0.2964388835
10269           <NA>    NA not_TE_peak        NR           NA
10270            Alu    35     TE_peak        NR 0.1140065147
10271      ERVL-MaLR   353     TE_peak        NR 1.0000000000
10272      ERVL-MaLR    91     TE_peak        NR 1.0000000000
10273      ERVL-MaLR   239     TE_peak        NR 0.6947674419
10274            Alu    93     TE_peak        NR 0.2980769231
10275             L2    82     TE_peak   LR_open 0.5774647887
10276           <NA>    NA not_TE_peak        NR           NA
10277           <NA>    NA not_TE_peak        NR           NA
10278  Simple_repeat    30     TE_peak        NR 1.0000000000
10279  Simple_repeat    35     TE_peak        NR 1.0000000000
10280  Simple_repeat    97     TE_peak   LR_open 1.0000000000
10281             L1   315     TE_peak   LR_open 0.7258064516
10282            Alu    46     TE_peak   LR_open 0.1916666667
10283            Alu   106     TE_peak  ESR_open 1.0000000000
10284            Alu    20     TE_peak        NR 0.1724137931
10285  Simple_repeat    40     TE_peak        NR 1.0000000000
10286             L2    51     TE_peak        NR 1.0000000000
10287           ERV1   304     TE_peak        NR 1.0000000000
10288            Alu   127     TE_peak        NR 1.0000000000
10289            Alu   153     TE_peak        NR 1.0000000000
10290           ERV1    21     TE_peak        NR 0.1794871795
10291           <NA>    NA not_TE_peak  ESR_open           NA
10292     hAT-Tip100    86     TE_peak        NR 1.0000000000
10293            Alu    30     TE_peak        NR 0.0974025974
10294             L2   272     TE_peak   LR_open 0.3546284224
10295            Alu    50     TE_peak   LR_open 0.3649635036
10296            Alu   164     TE_peak   LR_open 1.0000000000
10297     hAT-Tip100    58     TE_peak   LR_open 0.5225225225
10298             L2    76     TE_peak        NR 1.0000000000
10299  Simple_repeat    53     TE_peak        NR 1.0000000000
10300    hAT-Charlie     6     TE_peak        NR 0.0223880597
10301             L2   386     TE_peak        NR 0.7228464419
10302           ERVL   111     TE_peak        NR 0.4252873563
10303             L2   319     TE_peak        NR 0.3509350935
10304            Alu    55     TE_peak        NR 0.5092592593
10305             L2   398     TE_peak        NR 0.4368825467
10306           ERV1   250     TE_peak        NR 0.7936507937
10307           ERVK   345     TE_peak        NR 0.7371794872
10308             L1    47     TE_peak        NR 0.0765472313
10309            MIR    14     TE_peak        NR 0.0903225806
10310             L2   121     TE_peak   LR_open 0.2454361055
10311            Alu   104     TE_peak   LR_open 0.8595041322
10312       tRNA-RTE   164     TE_peak        NR 1.0000000000
10313  Simple_repeat    70     TE_peak        NR 1.0000000000
10314  Simple_repeat    24     TE_peak        NR 1.0000000000
10315   TcMar-Tigger    76     TE_peak  LR_close 0.3838383838
10316            MIR    36     TE_peak  LR_close 0.4800000000
10317           ERVL   156     TE_peak EAR_close 0.2151724138
10318           ERVL   336     TE_peak EAR_close 1.0000000000
10319            Alu    36     TE_peak EAR_close 0.4337349398
10320             L1    10     TE_peak        NR 0.0613496933
10321             L1   126     TE_peak        NR 0.9000000000
10322             L2    49     TE_peak        NR 0.4622641509
10323      ERVL-MaLR   452     TE_peak        NR 0.7833622184
10324    hAT-Charlie     6     TE_peak   LR_open 0.0271493213
10325            MIR    87     TE_peak        NR 1.0000000000
10326            MIR    72     TE_peak        NR 0.9230769231
10327             L2   379     TE_peak        NR 1.0000000000
10328            MIR   134     TE_peak        NR 0.6666666667
10329     hAT-Tip100   454     TE_peak        NR 0.4908108108
10330            MIR   115     TE_peak        NR 1.0000000000
10331      ERVL-MaLR   380     TE_peak        NR 1.0000000000
10332           <NA>    NA not_TE_peak        NR           NA
10333           <NA>    NA not_TE_peak        NR           NA
10334             L1   262     TE_peak  ESR_open 0.8972602740
10335            Alu   156     TE_peak  ESR_open 0.9750000000
10336  Simple_repeat    23     TE_peak        NR 1.0000000000
10337             L2   260     TE_peak        NR 0.4761904762
10338   TcMar-Tigger   225     TE_peak        NR 0.1008064516
10339             L1   590     TE_peak        NR 0.8452722063
10340            Alu    53     TE_peak        NR 0.1737704918
10341  Simple_repeat    27     TE_peak        NR 1.0000000000
10342  Simple_repeat    22     TE_peak        NR 1.0000000000
10343            Alu    14     TE_peak        NR 0.1000000000
10344           ERV1   461     TE_peak        NR 0.6700581395
10345            Alu     4     TE_peak   LR_open 0.0129449838
10346            Alu   170     TE_peak   LR_open 0.5862068966
10347    hAT-Charlie    15     TE_peak   LR_open 0.1034482759
10348           <NA>    NA not_TE_peak        NR           NA
10349      ERVL-MaLR    70     TE_peak   LR_open 1.0000000000
10350  Simple_repeat    26     TE_peak  EAR_open 1.0000000000
10351  Simple_repeat    51     TE_peak  EAR_open 1.0000000000
10352             L1   389     TE_peak        NR 0.1280447663
10353             L1   143     TE_peak        NR 0.6682242991
10354            Alu   221     TE_peak        NR 0.7647058824
10355           ERV1   335     TE_peak        NR 0.1542357274
10356           ERVK   358     TE_peak        NR 0.8248847926
10357  Simple_repeat    52     TE_peak        NR 1.0000000000
10358  Simple_repeat    88     TE_peak        NR 1.0000000000
10359            CR1    97     TE_peak        NR 0.5606936416
10360           <NA>    NA not_TE_peak        NR           NA
10361             L2    21     TE_peak        NR 0.1510791367
10362            Alu     8     TE_peak        NR 0.0305343511
10363           <NA>    NA not_TE_peak   LR_open           NA
10364           <NA>    NA not_TE_peak   LR_open           NA
10365           <NA>    NA not_TE_peak   LR_open           NA
10366           LTR?   114     TE_peak  LR_close 1.0000000000
10367            Alu    71     TE_peak  LR_close 0.4034090909
10368           <NA>    NA not_TE_peak        NR           NA
10369    hAT-Charlie   264     TE_peak   LR_open 1.0000000000
10370            Alu    62     TE_peak   LR_open 0.1949685535
10371           <NA>    NA not_TE_peak        NR           NA
10372           <NA>    NA not_TE_peak ESR_close           NA
10373           <NA>    NA not_TE_peak        NR           NA
10374           <NA>    NA not_TE_peak        NR           NA
10375           <NA>    NA not_TE_peak        NR           NA
10376           <NA>    NA not_TE_peak        NR           NA
10377           <NA>    NA not_TE_peak        NR           NA
10378   TcMar-Tigger   191     TE_peak   LR_open 0.6141479100
10379            CR1   944     TE_peak  ESR_open 0.8130921619
10380            Alu   188     TE_peak   LR_open 0.6308724832
10381       RTE-BovB   164     TE_peak   LR_open 1.0000000000
10382             L2   132     TE_peak        NR 0.3464566929
10383 Low_complexity    40     TE_peak        NR 1.0000000000
10384 Low_complexity    41     TE_peak        NR 1.0000000000
10385  Simple_repeat    45     TE_peak   LR_open 1.0000000000
10386  Simple_repeat    37     TE_peak   LR_open 1.0000000000
10387    hAT-Charlie   120     TE_peak   LR_open 1.0000000000
10388           <NA>    NA not_TE_peak    ESR_OC           NA
10389           <NA>    NA not_TE_peak ESR_close           NA
10390             L2   136     TE_peak   LR_open 0.6903553299
10391    hAT-Charlie   183     TE_peak   LR_open 1.0000000000
10392           <NA>    NA not_TE_peak ESR_close           NA
10393            MIR   121     TE_peak   LR_open 0.6836158192
10394             L1    60     TE_peak   LR_open 1.0000000000
10395      ERVL-MaLR   193     TE_peak   LR_open 0.4447004608
10396           <NA>    NA not_TE_peak        NR           NA
10397           <NA>    NA not_TE_peak        NR           NA
10398           <NA>    NA not_TE_peak  LR_close           NA
10399            MIR    93     TE_peak   LR_open 0.7153846154
10400   TcMar-Tigger   196     TE_peak   LR_open 0.1673783091
10401   TcMar-Tigger   292     TE_peak        NR 0.2493595218
10402             L2    27     TE_peak        NR 0.0823170732
10403   TcMar-Tigger   222     TE_peak        NR 0.4988764045
10404             L1    64     TE_peak        NR 0.0956651719
10405          snRNA    35     TE_peak        NR 1.0000000000
10406            MIR    94     TE_peak        NR 1.0000000000
10407           <NA>    NA not_TE_peak        NR           NA
10408           ERV1    70     TE_peak   LR_open 0.3804347826
10409            Alu   189     TE_peak   LR_open 0.6096774194
10410           ERVL   377     TE_peak        NR 0.9106280193
10411            MIR   167     TE_peak        NR 1.0000000000
10412           tRNA    85     TE_peak        NR 1.0000000000
10413  Simple_repeat    27     TE_peak        NR 1.0000000000
10414    hAT-Charlie    89     TE_peak        NR 0.7355371901
10415           ERVK   177     TE_peak        NR 0.1839916840
10416           <NA>    NA not_TE_peak  EAR_open           NA
10417            Alu   263     TE_peak        NR 0.8945578231
10418  Simple_repeat    27     TE_peak        NR 1.0000000000
10419  Simple_repeat    79     TE_peak        NR 1.0000000000
10420   TcMar-Tigger   623     TE_peak        NR 0.7506024096
10421      ERVL-MaLR   252     TE_peak        NR 0.7590361446
10422           <NA>    NA not_TE_peak ESR_close           NA
10423             L2   424     TE_peak        NR 0.9137931034
10424           <NA>    NA not_TE_peak        NR           NA
10425            MIR    22     TE_peak        NR 0.0859375000
10426           ERVK   352     TE_peak   LR_open 0.9591280654
10427           <NA>    NA not_TE_peak        NR           NA
10428            MIR    51     TE_peak        NR 0.3617021277
10429           <NA>    NA not_TE_peak        NR           NA
10430       RTE-BovB     5     TE_peak   LR_open 0.0793650794
10431  Simple_repeat    25     TE_peak ESR_close 1.0000000000
10432             L2   127     TE_peak        NR 0.4319727891
10433           <NA>    NA not_TE_peak        NR           NA
10434           <NA>    NA not_TE_peak        NR           NA
10435            MIR    96     TE_peak        NR 0.5517241379
10436  Simple_repeat    47     TE_peak        NR 1.0000000000
10437     hAT-Tip100    56     TE_peak        NR 0.4827586207
10438     hAT-Tip100   103     TE_peak        NR 1.0000000000
10439      ERVL-MaLR   126     TE_peak        NR 0.6331658291
10440            Alu    44     TE_peak        NR 0.1560283688
10441  Simple_repeat    34     TE_peak        NR 1.0000000000
10442           <NA>    NA not_TE_peak   LR_open           NA
10443             L1    41     TE_peak        NR 0.1595330739
10444           <NA>    NA not_TE_peak  EAR_open           NA
10445            MIR   207     TE_peak        NR 1.0000000000
10446           <NA>    NA not_TE_peak  EAR_open           NA
10447            MIR    72     TE_peak   LR_open 0.3200000000
10448      ERVL-MaLR     5     TE_peak   LR_open 0.0118483412
10449           <NA>    NA not_TE_peak   LR_open           NA
10450           <NA>    NA not_TE_peak  LR_close           NA
10451           ERVL   344     TE_peak        NR 1.0000000000
10452      ERVL-MaLR   211     TE_peak        NR 0.7201365188
10453             L2   104     TE_peak   LR_open 1.0000000000
10454             L2    73     TE_peak   LR_open 0.2570422535
10455            MIR    81     TE_peak        NR 0.4111675127
10456             L2   101     TE_peak        NR 0.3447098976
10457             L1   189     TE_peak        NR 0.4334862385
10458            Alu    95     TE_peak        NR 0.3084415584
10459             L2    97     TE_peak        NR 0.3255033557
10460             L2   120     TE_peak        NR 0.4878048780
10461          RTE-X   177     TE_peak   LR_open 0.5531250000
10462   TcMar-Tigger    73     TE_peak   LR_open 1.0000000000
10463           <NA>    NA not_TE_peak   LR_open           NA
10464           <NA>    NA not_TE_peak        NR           NA
10465           <NA>    NA not_TE_peak        NR           NA
10466            MIR   143     TE_peak  ESR_open 1.0000000000
10467           <NA>    NA not_TE_peak        NR           NA
10468             L1   348     TE_peak  LR_close 0.9255319149
10469            MIR   147     TE_peak  LR_close 1.0000000000
10470             L1   129     TE_peak  LR_close 1.0000000000
10471            MIR    14     TE_peak        NR 0.3589743590
10472            MIR   145     TE_peak        NR 0.6016597510
10473           <NA>    NA not_TE_peak  LR_close           NA
10474    hAT-Charlie   245     TE_peak        NR 1.0000000000
10475  Simple_repeat    35     TE_peak        NR 1.0000000000
10476 Low_complexity    36     TE_peak        NR 1.0000000000
10477      ERVL-MaLR   407     TE_peak        NR 0.7359855335
10478    hAT-Charlie     7     TE_peak  LR_close 0.0307017544
10479             L2   126     TE_peak  LR_close 1.0000000000
10480            Alu   126     TE_peak   LR_open 0.4421052632
10481            MIR   128     TE_peak        NR 1.0000000000
10482            MIR   209     TE_peak   LR_open 1.0000000000
10483    hAT-Charlie    81     TE_peak        NR 0.1603960396
10484             L1   810     TE_peak  ESR_open 0.2367728734
10485      ERVL-MaLR   102     TE_peak   LR_open 1.0000000000
10486             L2    72     TE_peak ESR_close 0.2360655738
10487           <NA>    NA not_TE_peak    ESR_OC           NA
10488           <NA>    NA not_TE_peak   LR_open           NA
10489           ERVL   122     TE_peak        NR 0.6853932584
10490           <NA>    NA not_TE_peak        NR           NA
10491          RTE-X    83     TE_peak        NR 1.0000000000
10492  Simple_repeat    38     TE_peak        NR 1.0000000000
10493             L2   636     TE_peak        NR 0.7344110855
10494             L2   156     TE_peak   LR_open 1.0000000000
10495           <NA>    NA not_TE_peak        NR           NA
10496           <NA>    NA not_TE_peak ESR_close           NA
10497           ERV1    62     TE_peak  LR_close 0.1428571429
10498            MIR   106     TE_peak  LR_close 1.0000000000
10499            MIR    27     TE_peak  LR_close 0.2250000000
10500             L2    68     TE_peak   LR_open 1.0000000000
10501            MIR   106     TE_peak   LR_open 1.0000000000
10502            Alu    26     TE_peak   LR_open 0.0881355932
10503           <NA>    NA not_TE_peak        NR           NA
10504           ERVL   268     TE_peak  LR_close 0.5942350333
10505           <NA>    NA not_TE_peak  ESR_open           NA
10506             L2    49     TE_peak        NR 1.0000000000
10507            MIR   141     TE_peak   LR_open 0.7704918033
10508           ERVL   377     TE_peak   LR_open 0.8726851852
10509            Alu    15     TE_peak        NR 0.0684931507
10510            Alu   138     TE_peak        NR 1.0000000000
10511           <NA>    NA not_TE_peak        NR           NA
10512           <NA>    NA not_TE_peak   LR_open           NA
10513      ERVL-MaLR   303     TE_peak  LR_close 1.0000000000
10514             L2    21     TE_peak ESR_close 0.1627906977
10515            MIR   239     TE_peak  ESR_open 1.0000000000
10516             L1   131     TE_peak        NR 1.0000000000
10517     hAT-Tip100    70     TE_peak        NR 1.0000000000
10518            MIR    15     TE_peak        NR 0.1351351351
10519  Simple_repeat    50     TE_peak        NR 1.0000000000
10520           ERV1    52     TE_peak        NR 0.0955882353
10521           <NA>    NA not_TE_peak   LR_open           NA
10522             L1    20     TE_peak        NR 0.0749063670
10523    hAT-Charlie   184     TE_peak        NR 1.0000000000
10524             L1     1     TE_peak        NR 0.0101010101
10525             L1   117     TE_peak        NR 0.1226415094
10526            MIR   132     TE_peak        NR 1.0000000000
10527  Simple_repeat    77     TE_peak        NR 1.0000000000
10528            Alu   207     TE_peak   LR_open 0.6634615385
10529            hAT   185     TE_peak   LR_open 1.0000000000
10530   TcMar-Tigger    36     TE_peak   LR_open 0.1065088757
10531    hAT-Charlie   114     TE_peak        NR 1.0000000000
10532    hAT-Charlie   225     TE_peak        NR 1.0000000000
10533             L2   189     TE_peak ESR_close 0.9264705882
10534            MIR     6     TE_peak        NR 0.0441176471
10535    hAT-Charlie   171     TE_peak        NR 1.0000000000
10536  Simple_repeat    28     TE_peak        NR 1.0000000000
10537    hAT-Charlie    35     TE_peak        NR 1.0000000000
10538  Simple_repeat    12     TE_peak        NR 0.6000000000
10539           <NA>    NA not_TE_peak   LR_open           NA
10540           <NA>    NA not_TE_peak    ESR_OC           NA
10541           <NA>    NA not_TE_peak        NR           NA
10542           <NA>    NA not_TE_peak   LR_open           NA
10543           <NA>    NA not_TE_peak  LR_close           NA
10544           <NA>    NA not_TE_peak   LR_open           NA
10545           <NA>    NA not_TE_peak   LR_open           NA
10546           <NA>    NA not_TE_peak        NR           NA
10547        Unknown    75     TE_peak   LR_open 1.0000000000
10548            CR1   337     TE_peak   LR_open 0.7659090909
10549 Low_complexity    32     TE_peak        NR 1.0000000000
10550  Simple_repeat    25     TE_peak        NR 1.0000000000
10551  Simple_repeat    41     TE_peak        NR 1.0000000000
10552  Simple_repeat    53     TE_peak        NR 1.0000000000
10553             L2   365     TE_peak ESR_close 0.7749469214
10554      ERVL-MaLR    37     TE_peak  LR_close 0.1485943775
10555            Alu   115     TE_peak  LR_close 0.3965517241
10556           ERVL   172     TE_peak   LR_open 0.3121597096
10557  Simple_repeat    45     TE_peak        NR 1.0000000000
10558  Simple_repeat    41     TE_peak        NR 1.0000000000
10559  Simple_repeat    42     TE_peak        NR 1.0000000000
10560             L2    13     TE_peak        NR 0.0562770563
10561      ERVL-MaLR   419     TE_peak        NR 0.8586065574
10562             L2   117     TE_peak        NR 0.5969387755
10563      ERVL-MaLR   293     TE_peak   LR_open 1.0000000000
10564             L1   300     TE_peak   LR_open 0.4444444444
10565      ERVL-MaLR   220     TE_peak        NR 0.8906882591
10566            Alu   137     TE_peak        NR 1.0000000000
10567            MIR    86     TE_peak        NR 1.0000000000
10568            MIR    91     TE_peak  LR_close 1.0000000000
10569            Alu    73     TE_peak   LR_open 0.2288401254
10570  Simple_repeat    22     TE_peak   LR_open 1.0000000000
10571           <NA>    NA not_TE_peak   LR_open           NA
10572            Alu   234     TE_peak   LR_open 0.8327402135
10573            Alu   133     TE_peak        NR 0.5635593220
10574    hAT-Charlie   183     TE_peak        NR 0.9289340102
10575  Simple_repeat    21     TE_peak        NR 1.0000000000
10576      ERVL-MaLR   215     TE_peak        NR 1.0000000000
10577             L2   130     TE_peak        NR 0.6190476190
10578            Alu    76     TE_peak        NR 0.5390070922
10579  Simple_repeat    25     TE_peak        NR 1.0000000000
10580           <NA>    NA not_TE_peak        NR           NA
10581           ERV1   419     TE_peak        NR 0.9088937093
10582            MIR   197     TE_peak        NR 1.0000000000
10583  Simple_repeat    42     TE_peak        NR 1.0000000000
10584             L1   359     TE_peak        NR 1.0000000000
10585             L2   617     TE_peak        NR 0.9463190184
10586             L1    42     TE_peak        NR 1.0000000000
10587             L1     2     TE_peak        NR 0.0119760479
10588   TcMar-Tigger   254     TE_peak        NR 0.5381355932
10589            Alu   133     TE_peak   LR_open 0.8260869565
10590    hAT-Charlie   151     TE_peak  LR_close 0.6958525346
10591             L2   150     TE_peak  LR_close 1.0000000000
10592             L2    74     TE_peak  LR_close 0.2596491228
10593           <NA>    NA not_TE_peak        NR           NA
10594             L2    86     TE_peak        NR 0.5810810811
10595      ERVL-MaLR   378     TE_peak        NR 0.8094218415
10596            MIR   100     TE_peak        NR 0.6711409396
10597             L2    71     TE_peak        NR 1.0000000000
10598  Simple_repeat   102     TE_peak        NR 1.0000000000
10599           <NA>    NA not_TE_peak        NR           NA
10600  Simple_repeat    22     TE_peak EAR_close 1.0000000000
10601           ERVL   139     TE_peak  LR_close 0.7808988764
10602           <NA>    NA not_TE_peak   LR_open           NA
10603           <NA>    NA not_TE_peak  LR_close           NA
10604             L2    20     TE_peak        NR 0.2298850575
10605             L2   264     TE_peak  LR_close 1.0000000000
10606             L2   108     TE_peak        NR 0.3600000000
10607            MIR   186     TE_peak        NR 1.0000000000
10608     hAT-Tip100    65     TE_peak        NR 0.1158645276
10609             L2     3     TE_peak        NR 0.0103448276
10610            MIR    94     TE_peak        NR 1.0000000000
10611           <NA>    NA not_TE_peak        NR           NA
10612             L2   120     TE_peak        NR 1.0000000000
10613            MIR   220     TE_peak        NR 1.0000000000
10614           <NA>    NA not_TE_peak  LR_close           NA
10615   TcMar-Tigger    52     TE_peak        NR 0.1498559078
10616  Simple_repeat    35     TE_peak        NR 1.0000000000
10617            MIR   230     TE_peak        NR 1.0000000000
10618            MIR   140     TE_peak        NR 0.7821229050
10619           ERV1   240     TE_peak   LR_open 0.4687500000
10620           ERVL   157     TE_peak        NR 0.5322033898
10621           <NA>    NA not_TE_peak        NR           NA
10622           <NA>    NA not_TE_peak        NR           NA
10623             L2   552     TE_peak ESR_close 0.7225130890
10624             L2   369     TE_peak   LR_open 0.4226804124
10625             L1    69     TE_peak        NR 0.4312500000
10626           <NA>    NA not_TE_peak EAR_close           NA
10627           <NA>    NA not_TE_peak        NR           NA
10628             L1   435     TE_peak   LR_open 0.0732816712
10629             L1   127     TE_peak   LR_open 0.6719576720
10630             L1   169     TE_peak        NR 0.0550130208
10631  Simple_repeat    37     TE_peak        NR 1.0000000000
10632      ERVL-MaLR   158     TE_peak        NR 1.0000000000
10633             L2    74     TE_peak        NR 0.1564482030
10634      ERVL-MaLR   213     TE_peak        NR 1.0000000000
10635           <NA>    NA not_TE_peak  LR_close           NA
10636  Simple_repeat    21     TE_peak  LR_close 0.4038461538
10637             L1   309     TE_peak ESR_close 0.1200000000
10638            MIR   191     TE_peak   not_mrc 1.0000000000
10639      5S-Deu-L2    39     TE_peak   not_mrc 1.0000000000
10640            CR1    39     TE_peak   not_mrc 1.0000000000
10641             L2   541     TE_peak        NR 0.9376083189
10642        Unknown   105     TE_peak        NR 0.3431372549
10643           <NA>    NA not_TE_peak   LR_open           NA
10644   TcMar-Tigger   395     TE_peak   LR_open 0.2459526775
10645             L2    10     TE_peak        NR 0.0303951368
10646      ERVL-MaLR   485     TE_peak        NR 1.0000000000
10647            MIR    74     TE_peak        NR 0.3490566038
10648           DNA?    74     TE_peak        NR 1.0000000000
10649             L2   731     TE_peak   LR_open 0.8969325153
10650            Alu    13     TE_peak   LR_open 0.0429042904
10651           ERV1    89     TE_peak        NR 0.5741935484
10652  Simple_repeat    19     TE_peak        NR 1.0000000000
10653            CR1   126     TE_peak        NR 1.0000000000
10654            Alu   131     TE_peak        NR 0.4337748344
10655      ERVL-MaLR   343     TE_peak        NR 0.6673151751
10656           ERVL   286     TE_peak  LR_close 0.6729411765
10657      ERVL-MaLR   331     TE_peak   LR_open 1.0000000000
10658           ERVL   233     TE_peak   not_mrc 0.6773255814
10659           ERV1    46     TE_peak        NR 0.0907297830
10660      ERVL-MaLR   165     TE_peak        NR 1.0000000000
10661           <NA>    NA not_TE_peak  EAR_open           NA
10662             L2   121     TE_peak        NR 1.0000000000
10663             L2     5     TE_peak        NR 0.0416666667
10664         hAT-Ac   171     TE_peak  LR_close 1.0000000000
10665  Simple_repeat    64     TE_peak  LR_close 1.0000000000
10666            MIR    62     TE_peak  LR_close 0.4217687075
10667      ERVL-MaLR   326     TE_peak  LR_close 1.0000000000
10668      ERVL-MaLR   141     TE_peak        NR 1.0000000000
10669            Alu    32     TE_peak        NR 0.7441860465
10670            CR1   143     TE_peak        NR 1.0000000000
10671   TcMar-Tigger   133     TE_peak        NR 0.5782608696
10672     hAT-Tip100   179     TE_peak        NR 1.0000000000
10673            MIR   139     TE_peak        NR 1.0000000000
10674           ERVL   157     TE_peak        NR 0.3895781638
10675            CR1    42     TE_peak   LR_open 0.4242424242
10676            CR1   264     TE_peak   LR_open 1.0000000000
10677             L2   225     TE_peak   LR_open 0.3510140406
10678  Simple_repeat    69     TE_peak        NR 1.0000000000
10679 Low_complexity    44     TE_peak        NR 1.0000000000
10680            Alu   262     TE_peak        NR 0.8343949045
10681  Simple_repeat    13     TE_peak        NR 1.0000000000
10682             L1   272     TE_peak        NR 0.5762711864
10683            SVA   838     TE_peak        NR 0.4532179557
10684            Alu   164     TE_peak        NR 0.5597269625
10685           <NA>    NA not_TE_peak        NR           NA
10686           <NA>    NA not_TE_peak   not_mrc           NA
10687             L1   677     TE_peak   LR_open 0.1519982039
10688            CR1    74     TE_peak        NR 0.8604651163
10689            CR1   129     TE_peak        NR 1.0000000000
10690  Simple_repeat    52     TE_peak        NR 1.0000000000
10691            CR1    27     TE_peak        NR 0.6428571429
10692             L1    83     TE_peak        NR 1.0000000000
10693            Alu    68     TE_peak        NR 0.2361111111
10694          Gypsy   111     TE_peak        NR 1.0000000000
10695          Gypsy   376     TE_peak        NR 1.0000000000
10696           ERV1    15     TE_peak        NR 0.0234009360
10697             L2   305     TE_peak        NR 0.4326241135
10698           <NA>    NA not_TE_peak        NR           NA
10699         hAT-Ac   140     TE_peak        NR 1.0000000000
10700        Unknown    56     TE_peak        NR 0.3660130719
10701      ERVL-MaLR    27     TE_peak        NR 0.0632318501
10702    hAT-Charlie   143     TE_peak        NR 1.0000000000
10703            MIR   135     TE_peak        NR 1.0000000000
10704             L2   105     TE_peak        NR 0.4506437768
10705           <NA>    NA not_TE_peak        NR           NA
10706           <NA>    NA not_TE_peak        NR           NA
10707           ERV1   525     TE_peak        NR 0.9722222222
10708             L2   421     TE_peak   LR_open 0.7613019892
10709           <NA>    NA not_TE_peak        NR           NA
10710            CR1    71     TE_peak        NR 0.8987341772
10711            MIR   149     TE_peak        NR 0.8324022346
10712    hAT-Charlie    97     TE_peak EAR_close 0.7293233083
10713             L2    50     TE_peak        NR 1.0000000000
10714             L1    26     TE_peak        NR 0.1428571429
10715           <NA>    NA not_TE_peak ESR_close           NA
10716             L2   150     TE_peak  EAR_open 0.1965923984
10717  Simple_repeat    37     TE_peak        NR 1.0000000000
10718            MIR    71     TE_peak        NR 1.0000000000
10719             L1    11     TE_peak        NR 0.0216962525
10720             L2   292     TE_peak        NR 1.0000000000
10721             L2   355     TE_peak   LR_open 0.6672932331
10722           <NA>    NA not_TE_peak        NR           NA
10723   TcMar-Tigger   143     TE_peak   LR_open 1.0000000000
10724            Alu   154     TE_peak   LR_open 0.8555555556
10725            MIR    75     TE_peak        NR 1.0000000000
10726             L2    31     TE_peak        NR 1.0000000000
10727  Simple_repeat    37     TE_peak        NR 1.0000000000
10728            MIR    91     TE_peak        NR 0.4193548387
10729            Alu    91     TE_peak   LR_open 0.3013245033
10730             L2   136     TE_peak   LR_open 1.0000000000
10731            CR1    48     TE_peak ESR_close 0.8421052632
10732             L2   365     TE_peak ESR_close 0.8774038462
10733            MIR    48     TE_peak        NR 1.0000000000
10734            MIR    61     TE_peak        NR 1.0000000000
10735      ERVL-MaLR   457     TE_peak        NR 1.0000000000
10736      ERVL-MaLR   135     TE_peak        NR 0.0991917708
10737 Low_complexity    11     TE_peak        NR 0.1666666667
10738  Simple_repeat    13     TE_peak        NR 0.5652173913
10739             L2    47     TE_peak        NR 0.8545454545
10740  Simple_repeat    32     TE_peak        NR 1.0000000000
10741  Simple_repeat    48     TE_peak        NR 1.0000000000
10742           <NA>    NA not_TE_peak        NR           NA
10743             L2    21     TE_peak   LR_open 0.2727272727
10744            Alu   311     TE_peak   LR_open 1.0000000000
10745             L2    59     TE_peak   LR_open 1.0000000000
10746           ERVL   282     TE_peak   LR_open 0.4787775891
10747           <NA>    NA not_TE_peak        NR           NA
10748           <NA>    NA not_TE_peak EAR_close           NA
10749           ERVL   421     TE_peak        NR 0.3373397436
10750            MIR   196     TE_peak        NR 1.0000000000
10751      ERVL-MaLR   393     TE_peak  LR_close 0.8221757322
10752        Unknown    58     TE_peak  LR_close 0.4531250000
10753           <NA>    NA not_TE_peak   LR_open           NA
10754  Simple_repeat    56     TE_peak        NR 1.0000000000
10755           <NA>    NA not_TE_peak   LR_open           NA
10756             L2   197     TE_peak        NR 1.0000000000
10757             L2    74     TE_peak        NR 1.0000000000
10758           <NA>    NA not_TE_peak        NR           NA
10759  Simple_repeat    27     TE_peak   LR_open 1.0000000000
10760  Simple_repeat    66     TE_peak  EAR_open 1.0000000000
10761  Simple_repeat    40     TE_peak        NR 1.0000000000
10762  Simple_repeat    36     TE_peak        NR 1.0000000000
10763  Simple_repeat    61     TE_peak        NR 1.0000000000
10764 Low_complexity    33     TE_peak        NR 1.0000000000
10765           <NA>    NA not_TE_peak  LR_close           NA
10766            Alu   114     TE_peak   LR_open 0.4086021505
10767  Simple_repeat   158     TE_peak   LR_open 0.6723404255
10768             L2   250     TE_peak   LR_open 1.0000000000
10769           <NA>    NA not_TE_peak        NR           NA
10770           <NA>    NA not_TE_peak   not_mrc           NA
10771             L2    85     TE_peak   LR_open 1.0000000000
10772  Simple_repeat    40     TE_peak        NR 1.0000000000
10773    hAT-Charlie   138     TE_peak        NR 0.9078947368
10774 Low_complexity    21     TE_peak        NR 0.3684210526
10775            MIR   167     TE_peak   LR_open 0.9823529412
10776           ERV1   270     TE_peak   LR_open 0.4173106646
10777            MIR   137     TE_peak        NR 0.7740112994
10778           <NA>    NA not_TE_peak   LR_open           NA
10779             L2   447     TE_peak        NR 0.5730769231
10780           ERVL   469     TE_peak        NR 0.9361277445
10781    hAT-Charlie   124     TE_peak   LR_open 0.7750000000
10782            Alu   247     TE_peak   LR_open 0.9573643411
10783           ERV1   333     TE_peak        NR 0.2307692308
10784   TcMar-Tigger   345     TE_peak   LR_open 0.3188539741
10785            MIR   190     TE_peak  LR_close 1.0000000000
10786            MIR   237     TE_peak  LR_close 1.0000000000
10787             L2   458     TE_peak  LR_close 1.0000000000
10788             L2   106     TE_peak   LR_open 1.0000000000
10789           <NA>    NA not_TE_peak ESR_close           NA
10790             L1    72     TE_peak        NR 0.0209363187
10791             L2   182     TE_peak        NR 0.5481927711
10792             L1   427     TE_peak ESR_close 0.4178082192
10793             L1   467     TE_peak        NR 0.4755600815
10794  Simple_repeat    32     TE_peak        NR 1.0000000000
10795   TcMar-Tigger   285     TE_peak        NR 0.2722063037
10796    hAT-Charlie   190     TE_peak        NR 1.0000000000
10797            MIR   123     TE_peak        NR 1.0000000000
10798  Simple_repeat    30     TE_peak        NR 1.0000000000
10799             L2   195     TE_peak   not_mrc 1.0000000000
10800            MIR   145     TE_peak   not_mrc 1.0000000000
10801           ERV1   442     TE_peak        NR 0.9888143177
10802           ERV1   322     TE_peak        NR 0.7488372093
10803            CR1   303     TE_peak   LR_open 0.8657142857
10804            MIR   112     TE_peak   LR_open 1.0000000000
10805  Simple_repeat    26     TE_peak   LR_open 1.0000000000
10806  Simple_repeat    50     TE_peak   LR_open 1.0000000000
10807  Simple_repeat    51     TE_peak   LR_open 1.0000000000
10808  Simple_repeat    39     TE_peak   LR_open 1.0000000000
10809           <NA>    NA not_TE_peak        NR           NA
10810           <NA>    NA not_TE_peak        NR           NA
10811           <NA>    NA not_TE_peak  LR_close           NA
10812           <NA>    NA not_TE_peak   not_mrc           NA
10813           ERV1   287     TE_peak        NR 0.7086419753
10814            MIR   145     TE_peak        NR 0.7631578947
10815             L2   209     TE_peak        NR 0.3913857678
10816            CR1    38     TE_peak        NR 0.2000000000
10817            MIR   139     TE_peak        NR 1.0000000000
10818          RTE-X   161     TE_peak        NR 0.4908536585
10819      ERVL-MaLR   224     TE_peak        NR 0.2403433476
10820      ERVL-MaLR   364     TE_peak ESR_close 0.8348623853
10821            MIR    63     TE_peak   LR_open 0.3281250000
10822            CR1   221     TE_peak        NR 1.0000000000
10823      ERVL-MaLR   292     TE_peak        NR 0.6636363636
10824             L2   100     TE_peak        NR 0.5235602094
10825            MIR   206     TE_peak        NR 1.0000000000
10826            MIR   100     TE_peak        NR 1.0000000000
10827           <NA>    NA not_TE_peak        NR           NA
10828            MIR    30     TE_peak   LR_open 0.2654867257
10829            MIR    51     TE_peak  LR_close 0.2383177570
10830      ERVL-MaLR    94     TE_peak  LR_close 0.2410256410
10831           <NA>    NA not_TE_peak   LR_open           NA
10832           <NA>    NA not_TE_peak        NR           NA
10833           <NA>    NA not_TE_peak   LR_open           NA
10834             L1   505     TE_peak        NR 0.8041401274
10835    hAT-Charlie   171     TE_peak        NR 0.7600000000
10836           <NA>    NA not_TE_peak   LR_open           NA
10837           <NA>    NA not_TE_peak        NR           NA
10838           <NA>    NA not_TE_peak        NR           NA
10839           <NA>    NA not_TE_peak        NR           NA
10840      ERVL-MaLR   282     TE_peak ESR_close 0.6453089245
10841           <NA>    NA not_TE_peak   LR_open           NA
10842            Alu    46     TE_peak   LR_open 0.1538461538
10843       RTE-BovB   169     TE_peak        NR 1.0000000000
10844       RTE-BovB   177     TE_peak        NR 1.0000000000
10845           <NA>    NA not_TE_peak   LR_open           NA
10846           <NA>    NA not_TE_peak        NR           NA
10847          ERVL?   470     TE_peak        NR 0.9552845528
10848           <NA>    NA not_TE_peak        NR           NA
10849           <NA>    NA not_TE_peak        NR           NA
10850           <NA>    NA not_TE_peak  ESR_open           NA
10851           ERV1   178     TE_peak        NR 0.2807570978
10852            Alu   158     TE_peak        NR 0.5337837838
10853           ERV1   442     TE_peak   LR_open 0.9246861925
10854           ERV1   469     TE_peak ESR_close 1.0000000000
10855            Alu    24     TE_peak ESR_close 0.1832061069
10856            Alu    68     TE_peak        NR 0.2214983713
10857            CR1    80     TE_peak        NR 0.4624277457
10858      ERVL-MaLR    86     TE_peak        NR 0.4134615385
10859         Gypsy?    82     TE_peak        NR 1.0000000000
10860           <NA>    NA not_TE_peak   LR_open           NA
10861           <NA>    NA not_TE_peak        NR           NA
10862           <NA>    NA not_TE_peak   LR_open           NA
10863            SVA   394     TE_peak   not_mrc 0.2808267997
10864    hAT-Charlie    62     TE_peak   LR_open 0.4592592593
10865           ERV1    74     TE_peak   LR_open 0.1149068323
10866           ERV1    71     TE_peak        NR 0.5725806452
10867            Alu    83     TE_peak        NR 1.0000000000
10868           ERV1    95     TE_peak        NR 1.0000000000
10869           ERVK   398     TE_peak        NR 0.6838487973
10870             L1    46     TE_peak   LR_open 0.1446540881
10871      ERVL-MaLR   238     TE_peak   LR_open 0.2474012474
10872  Simple_repeat    20     TE_peak        NR 1.0000000000
10873            Alu   156     TE_peak        NR 0.5131578947
10874            Alu    76     TE_peak  EAR_open 0.2428115016
10875            MIR    98     TE_peak  EAR_open 0.5414364641
10876    hAT-Charlie    11     TE_peak   LR_open 1.0000000000
10877    hAT-Charlie    16     TE_peak   LR_open 0.0869565217
10878      ERVL-MaLR   348     TE_peak   LR_open 0.6810176125
10879             L1    64     TE_peak   LR_open 0.3121951220
10880            MIR    96     TE_peak        NR 1.0000000000
10881             L2   313     TE_peak        NR 0.6603375527
10882            Alu   289     TE_peak        NR 1.0000000000
10883  Simple_repeat    24     TE_peak        NR 1.0000000000
10884             L2   150     TE_peak        NR 1.0000000000
10885           <NA>    NA not_TE_peak        NR           NA
10886            MIR    63     TE_peak        NR 1.0000000000
10887            CR1   288     TE_peak        NR 1.0000000000
10888            Alu   312     TE_peak        NR 1.0000000000
10889  Simple_repeat    18     TE_peak   LR_open 1.0000000000
10890            MIR    52     TE_peak   LR_open 1.0000000000
10891             L2    51     TE_peak   LR_open 0.4322033898
10892            MIR   102     TE_peak        NR 0.6107784431
10893            MIR   155     TE_peak        NR 1.0000000000
10894           ERVL   101     TE_peak        NR 1.0000000000
10895  Simple_repeat    35     TE_peak        NR 1.0000000000
10896            MIR    40     TE_peak        NR 0.6557377049
10897           <NA>    NA not_TE_peak  LR_close           NA
10898             L2    84     TE_peak        NR 0.2745098039
10899             L2    80     TE_peak        NR 1.0000000000
10900             L2    54     TE_peak        NR 1.0000000000
10901           <NA>    NA not_TE_peak  EAR_open           NA
10902            Alu   292     TE_peak        NR 1.0000000000
10903             L2   449     TE_peak        NR 1.0000000000
10904            Alu    65     TE_peak        NR 0.2090032154
10905       tRNA-RTE    95     TE_peak        NR 1.0000000000
10906  Simple_repeat    31     TE_peak        NR 1.0000000000
10907  Simple_repeat    30     TE_peak        NR 1.0000000000
10908           <NA>    NA not_TE_peak        NR           NA
10909           <NA>    NA not_TE_peak        NR           NA
10910   TcMar-Tigger   162     TE_peak EAR_close 1.0000000000
10911 Low_complexity    51     TE_peak EAR_close 1.0000000000
10912           <NA>    NA not_TE_peak   LR_open           NA
10913             L2    78     TE_peak        NR 0.2280701754
10914            MIR    75     TE_peak        NR 0.4464285714
10915           <NA>    NA not_TE_peak        NR           NA
10916            MIR     7     TE_peak  LR_close 0.0518518519
10917             L2   280     TE_peak  LR_close 1.0000000000
10918             L2    15     TE_peak  LR_close 0.1470588235
10919    hAT-Charlie    47     TE_peak    ESR_OC 0.4351851852
10920             L2    82     TE_peak   LR_open 0.4039408867
10921  Simple_repeat     6     TE_peak        NR 0.2400000000
10922            MIR   244     TE_peak        NR 1.0000000000
10923            MIR    96     TE_peak        NR 1.0000000000
10924           <NA>    NA not_TE_peak        NR           NA
10925           <NA>    NA not_TE_peak        NR           NA
10926  Simple_repeat    35     TE_peak        NR 1.0000000000
10927  Simple_repeat    53     TE_peak        NR 1.0000000000
10928             L2   136     TE_peak        NR 0.3022222222
10929      ERVL-MaLR   423     TE_peak        NR 1.0000000000
10930             L2   535     TE_peak        NR 0.9674502712
10931           <NA>    NA not_TE_peak ESR_close           NA
10932  Simple_repeat    23     TE_peak        NR 1.0000000000
10933           <NA>    NA not_TE_peak   LR_open           NA
10934            MIR    98     TE_peak        NR 0.6242038217
10935           <NA>    NA not_TE_peak        NR           NA
10936  Simple_repeat    17     TE_peak  LR_close 1.0000000000
10937            MIR   118     TE_peak        NR 0.8082191781
10938           <NA>    NA not_TE_peak  LR_close           NA
10939           ERV1   484     TE_peak  ESR_open 0.7245508982
10940             L2   206     TE_peak  LR_close 0.6983050847
10941           <NA>    NA not_TE_peak        NR           NA
10942           ERVL   611     TE_peak        NR 0.7656641604
10943      ERVL-MaLR   274     TE_peak EAR_close 0.7675070028
10944           <NA>    NA not_TE_peak   LR_open           NA
10945            Alu   156     TE_peak        NR 1.0000000000
10946  Simple_repeat    24     TE_peak        NR 1.0000000000
10947             L2   328     TE_peak   LR_open 0.4992389650
10948             L1   295     TE_peak        NR 0.0543078056
10949      ERVL-MaLR   393     TE_peak  ESR_open 0.7132486388
10950             L2     1     TE_peak  ESR_open 0.0047619048
10951           <NA>    NA not_TE_peak        NR           NA
10952      ERVL-MaLR   344     TE_peak        NR 1.0000000000
10953            MIR    54     TE_peak   LR_open 0.3417721519
10954            MIR   135     TE_peak   LR_open 1.0000000000
10955   TcMar-Tigger    75     TE_peak   LR_open 1.0000000000
10956             L2    22     TE_peak   LR_open 0.2037037037
10957           <NA>    NA not_TE_peak  EAR_open           NA
10958             L2   131     TE_peak        NR 0.1742021277
10959   TcMar-Tigger   209     TE_peak        NR 1.0000000000
10960      ERVL-MaLR    93     TE_peak        NR 0.2421875000
10961             L2   582     TE_peak        NR 0.9341894061
10962           <NA>    NA not_TE_peak        NR           NA
10963           <NA>    NA not_TE_peak        NR           NA
10964           <NA>    NA not_TE_peak        NR           NA
10965    hAT-Charlie     1     TE_peak        NR 0.0054347826
10966             L2   426     TE_peak        NR 1.0000000000
10967             L2   112     TE_peak        NR 1.0000000000
10968  Simple_repeat    28     TE_peak        NR 1.0000000000
10969  Simple_repeat    46     TE_peak  ESR_open 1.0000000000
10970             L2    57     TE_peak  ESR_open 1.0000000000
10971            MIR   124     TE_peak  ESR_open 1.0000000000
10972            MIR    58     TE_peak        NR 0.6744186047
10973           tRNA    56     TE_peak        NR 1.0000000000
10974           <NA>    NA not_TE_peak        NR           NA
10975    hAT-Charlie     4     TE_peak        NR 0.0909090909
10976            MIR   113     TE_peak        NR 1.0000000000
10977            MIR    77     TE_peak        NR 0.5923076923
10978             L2   200     TE_peak        NR 1.0000000000
10979             L2   212     TE_peak        NR 0.7737226277
10980      ERVL-MaLR   346     TE_peak        NR 0.7637969095
10981      ERVL-MaLR   444     TE_peak        NR 1.0000000000
10982           <NA>    NA not_TE_peak        NR           NA
10983           <NA>    NA not_TE_peak   not_mrc           NA
10984             L2    78     TE_peak        NR 1.0000000000
10985           <NA>    NA not_TE_peak        NR           NA
10986             L2    63     TE_peak        NR 0.7777777778
10987             L2    65     TE_peak        NR 1.0000000000
10988             L2    63     TE_peak        NR 1.0000000000
10989       RTE-BovB   133     TE_peak        NR 1.0000000000
10990            MIR    15     TE_peak        NR 0.1000000000
10991             L2   165     TE_peak   not_mrc 0.5108359133
10992             L2   268     TE_peak        NR 1.0000000000
10993      ERVL-MaLR   158     TE_peak        NR 1.0000000000
10994  Simple_repeat   101     TE_peak        NR 1.0000000000
10995  Simple_repeat    21     TE_peak        NR 0.8750000000
10996  Simple_repeat    19     TE_peak  EAR_open 1.0000000000
10997  Simple_repeat    26     TE_peak  EAR_open 1.0000000000
10998           <NA>    NA not_TE_peak  EAR_open           NA
10999            Alu   239     TE_peak        NR 0.7492163009
11000            MIR   104     TE_peak        NR 0.9285714286
11001            MIR    70     TE_peak        NR 1.0000000000
11002            Alu    52     TE_peak        NR 0.1739130435
11003            MIR    10     TE_peak   LR_open 0.0485436893
11004            Alu    31     TE_peak   LR_open 0.2627118644
11005           <NA>    NA not_TE_peak   LR_open           NA
11006           <NA>    NA not_TE_peak        NR           NA
11007           <NA>    NA not_TE_peak ESR_close           NA
11008            Alu    39     TE_peak        NR 0.2600000000
11009    hAT-Charlie   106     TE_peak        NR 1.0000000000
11010  TcMar-Mariner   162     TE_peak        NR 1.0000000000
11011             L2    50     TE_peak        NR 0.1461988304
11012            MIR    43     TE_peak   LR_open 0.1829787234
11013            MIR   126     TE_peak   LR_open 1.0000000000
11014           DNA?   156     TE_peak   LR_open 1.0000000000
11015           ERV1   113     TE_peak  LR_close 0.2568181818
11016           <NA>    NA not_TE_peak   LR_open           NA
11017      ERVL-MaLR    10     TE_peak   LR_open 0.0253164557
11018           <NA>    NA not_TE_peak        NR           NA
11019           <NA>    NA not_TE_peak  ESR_open           NA
11020           <NA>    NA not_TE_peak   LR_open           NA
11021    hAT-Charlie     7     TE_peak   LR_open 0.0393258427
11022    hAT-Charlie   191     TE_peak   LR_open 1.0000000000
11023    hAT-Charlie   157     TE_peak   LR_open 1.0000000000
11024            MIR   154     TE_peak   LR_open 1.0000000000
11025      ERVL-MaLR    65     TE_peak   LR_open 0.5416666667
11026           <NA>    NA not_TE_peak   LR_open           NA
11027           ERVL   316     TE_peak        NR 0.6825053996
11028      MULE-MuDR    60     TE_peak        NR 1.0000000000
11029            CR1   134     TE_peak        NR 1.0000000000
11030           ERVL   544     TE_peak   not_mrc 0.8731942215
11031           ERV1   488     TE_peak   not_mrc 0.9070631970
11032           <NA>    NA not_TE_peak        NR           NA
11033           ERVL    23     TE_peak  LR_close 0.0501089325
11034           ERV1   530     TE_peak  LR_close 1.0000000000
11035      ERVL-MaLR   497     TE_peak        NR 0.9650485437
11036             L1   532     TE_peak        NR 0.1322725012
11037      ERVL-MaLR   273     TE_peak   LR_open 1.0000000000
11038           ERVL   211     TE_peak  ESR_open 0.2357541899
11039           ERVL   361     TE_peak EAR_close 0.7037037037
11040           <NA>    NA not_TE_peak        NR           NA
11041             L2    60     TE_peak  LR_close 0.4255319149
11042             L2   377     TE_peak  LR_close 0.9716494845
11043             L1   225     TE_peak        NR 0.0613747954
11044  hAT-Blackjack    50     TE_peak        NR 0.3937007874
11045           <NA>    NA not_TE_peak        NR           NA
11046             L2    62     TE_peak  LR_close 0.3387978142
11047           <NA>    NA not_TE_peak   LR_open           NA
11048             L2   292     TE_peak        NR 1.0000000000
11049           <NA>    NA not_TE_peak        NR           NA
11050  Simple_repeat    60     TE_peak        NR 1.0000000000
11051           ERV1   269     TE_peak        NR 1.0000000000
11052           ERV1   325     TE_peak   LR_open 0.6397637795
11053             L1   736     TE_peak  LR_close 0.4355029586
11054 Low_complexity    38     TE_peak        NR 1.0000000000
11055            Alu    97     TE_peak        NR 0.3321917808
11056             L1   900     TE_peak        NR 0.5917159763
11057  Simple_repeat    35     TE_peak        NR 1.0000000000
11058           <NA>    NA not_TE_peak        NR           NA
11059           ERV1   460     TE_peak        NR 0.5852417303
11060           <NA>    NA not_TE_peak        NR           NA
11061      ERVL-MaLR   193     TE_peak  LR_close 0.3222036728
11062      ERVL-MaLR     9     TE_peak  LR_close 0.0319148936
11063             L1   288     TE_peak        NR 0.2920892495
11064 Low_complexity    29     TE_peak   LR_open 1.0000000000
11065    hAT-Charlie   190     TE_peak   LR_open 1.0000000000
11066            MIR    39     TE_peak        NR 1.0000000000
11067            MIR   142     TE_peak        NR 0.7029702970
11068            CR1     4     TE_peak        NR 0.0089887640
11069      ERVL-MaLR   253     TE_peak    ESR_OC 0.8518518519
11070           ERVL   124     TE_peak        NR 1.0000000000
11071           ERVL   219     TE_peak        NR 1.0000000000
11072            MIR    30     TE_peak        NR 0.2205882353
11073            MIR   172     TE_peak   LR_open 1.0000000000
11074            MIR    98     TE_peak        NR 0.5975609756
11075             L2   584     TE_peak   LR_open 0.6927639383
11076             L2   240     TE_peak        NR 1.0000000000
11077   TcMar-Tigger   728     TE_peak EAR_close 0.2972641895
11078             L2    36     TE_peak        NR 0.1690140845
11079           <NA>    NA not_TE_peak        NR           NA
11080  Simple_repeat    46     TE_peak        NR 1.0000000000
11081  Simple_repeat    44     TE_peak        NR 1.0000000000
11082      ERVL-MaLR   252     TE_peak        NR 0.6737967914
11083           tRNA    52     TE_peak   not_mrc 1.0000000000
11084           <NA>    NA not_TE_peak   LR_open           NA
11085             L2    40     TE_peak  LR_close 0.3603603604
11086           ERVL   124     TE_peak   LR_open 1.0000000000
11087           ERVL   197     TE_peak   LR_open 0.6293929712
11088           ERVL    86     TE_peak        NR 0.2422535211
11089           ERVL   277     TE_peak        NR 0.9111842105
11090           <NA>    NA not_TE_peak        NR           NA
11091    hAT-Charlie   173     TE_peak        NR 0.4914772727
11092           <NA>    NA not_TE_peak        NR           NA
11093           ERVL   365     TE_peak        NR 0.8075221239
11094             L1   410     TE_peak        NR 0.2087576375
11095             L1   179     TE_peak   not_mrc 0.2364597094
11096           ERVK   387     TE_peak        NR 0.3973305955
11097             L1   311     TE_peak  LR_close 1.0000000000
11098            Alu    95     TE_peak   LR_open 0.2722063037
11099       RTE-BovB    30     TE_peak   LR_open 0.1886792453
11100            MIR   106     TE_peak ESR_close 1.0000000000
11101           ERVL   373     TE_peak ESR_close 0.9301745636
11102             L1   131     TE_peak   LR_open 0.3875739645
11103            Alu   272     TE_peak   LR_open 0.8119402985
11104           <NA>    NA not_TE_peak        NR           NA
11105      ERVL-MaLR    75     TE_peak        NR 1.0000000000
11106  Simple_repeat    17     TE_peak   LR_open 0.2207792208
11107           ERVL   213     TE_peak        NR 1.0000000000
11108           ERVL   257     TE_peak        NR 0.3818722140
11109           <NA>    NA not_TE_peak        NR           NA
11110   TcMar-Tigger   277     TE_peak        NR 0.5782881002
11111             L1     1     TE_peak        NR 0.0035842294
 [ reached 'max' / getOption("max.print") -- omitted 216046 rows ]

eight_lines <- Eight_group_TE %>% 
    dplyr::filter(repClass=="LINE") %>% 
  # distinct(mrc)
  dplyr::filter(mrc != "not_mrc") %>% 
  rbind(., ggline_df) %>% 
  mutate(repFamily=factor(repFamily)) %>% 
  mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
  dplyr::filter(mrc != "h.genome")

eight_lines %>% 
  ggplot(., aes(x=mrc, fill= repFamily))+
  geom_bar(position="fill", col="black")+
  theme_bw()+
  ggtitle(paste("LINE breakdown by eight-clusters and Family", per_cov))+
  scale_fill_lines()

Past versions of "LinesLTRand eight-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

eight_lines %>% 
  group_by(mrc,repFamily) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = repFamily, values_from = n) %>% 
  rowwise() %>% 
 mutate(total= sum(c_across("CR1":"RTE-X"),na.rm =TRUE)) %>% 
  kable(., caption="Breakdown of SINE counts by Family") %>% 
kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) %>% 
  scroll_box(height = "500px")

Breakdown of SINE counts by Family

mrc	CR1	Dong-R4	L1	L2	Penelope	RTE-BovB	RTE-X	total
EAR_open	39	1	253	427	1	9	9	739
EAR_close	81	1	348	633	NA	25	12	1100
ESR_open	112	NA	492	748	2	26	23	1403
ESR_close	165	NA	717	1285	1	49	16	2233
ESR_OC	24	1	110	179	NA	4	6	324
LR_open	710	7	2724	4849	9	142	128	8569
LR_close	237	3	1335	2058	1	81	62	3777
NR	1660	4	7395	11769	29	290	276	21423
all_peaks	3101	17	13664	22418	45	649	546	40440

eight_sines <- Eight_group_TE %>% 
  dplyr::filter(repClass=="SINE") %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
  rbind(., ggsine_df) %>% 
  mutate(repFamily=factor(repFamily)) %>% 
 mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
  dplyr::filter(mrc != "h.genome") 

eight_sines %>% 
  ggplot(., aes(x=mrc, fill= repFamily))+
  geom_bar(position="fill", col="black")+
  theme_bw()+
  ggtitle(paste("SINE breakdown by breakdown by eight-clusters and Family",per_cov))+
  scale_fill_sines()

Past versions of "Sines and eight-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

eight_sines %>% 
  group_by(mrc,repFamily) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = repFamily, values_from = n) %>% 
  rowwise() %>% 
 mutate(total_sines= sum(c_across(1:6),na.rm =TRUE)) %>% 
  kable(., caption="Breakdown of SINE counts by Family") %>% 
kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)%>% 
  scroll_box(height = "500px")

Breakdown of SINE counts by Family

mrc	5S-Deu-L2	Alu	MIR	tRNA	tRNA-Deu	tRNA-RTE	total_sines
EAR_open	4	459	530	4	1	5	1003
EAR_close	1	709	822	2	NA	11	1545
ESR_open	11	896	829	4	3	10	1753
ESR_close	10	1247	1727	11	NA	15	3010
ESR_OC	2	247	237	NA	NA	2	488
LR_open	42	5631	5179	32	12	100	10996
LR_close	35	1842	2440	13	7	30	4367
NR	127	12831	15289	84	30	171	28532
all_peaks	239	24295	27669	154	53	345	52755

eight_LTRs <- Eight_group_TE %>% 
  dplyr::filter(repClass=="LTR") %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
  rbind(., ggLTR_df) %>% 
  mutate(repFamily=factor(repFamily)) %>% 
 mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
  dplyr::filter(mrc != "h.genome")

eight_LTRs %>% 
  ggplot(., aes(x=mrc, fill= repFamily))+
  geom_bar(position="fill", col="black")+
  theme_bw()+
  ggtitle(paste("LTR breakdown by breakdown by eight-clusters and Family",per_cov))+
  scale_fill_LTRs()

Past versions of "LTR and eight-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

eight_LTRs %>% 
  group_by(mrc,repFamily) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = repFamily, values_from = n) %>% 
  rowwise() %>% 
 mutate(total= sum(c_across(1:9),na.rm =TRUE)) %>% 
  kable(., caption="Breakdown of LTR counts by Family") %>% 
kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)%>% 
  scroll_box(height = "500px")

Breakdown of LTR counts by Family

mrc	ERV1	ERVK	ERVL	ERVL-MaLR	ERVL?	Gypsy	Gypsy?	LTR	ERV1?	total
EAR_open	122	21	108	157	3	10	2	4	NA	427
EAR_close	201	23	202	335	4	15	5	2	NA	787
ESR_open	239	10	184	305	4	16	12	3	3	776
ESR_close	353	40	428	618	4	40	12	10	3	1508
ESR_OC	57	2	79	92	NA	7	7	NA	1	245
LR_open	1547	79	1602	2603	20	142	93	22	8	6116
LR_close	614	42	843	1046	10	69	40	16	4	2684
NR	4010	526	4215	5212	97	405	212	58	22	14757
all_peaks	7266	755	7821	10588	147	719	390	116	42	27844

eight_DNA <- Eight_group_TE %>% 
  dplyr::filter(repClass=="DNA") %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
  rbind(., ggDNA_df) %>% 
  mutate(repFamily=factor(repFamily)) %>% 
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
  dplyr::filter(mrc != "h.genome") 

eight_DNA %>% 
  ggplot(., aes(x=mrc, fill= repFamily))+
  geom_bar(position="fill", col="black")+
  theme_bw()+
  ggtitle(paste("DNA breakdown by breakdown by eight-clusters and Family",per_cov))+
  scale_fill_DNAs()

Past versions of "DNA and eight-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

eight_DNA %>% 
  group_by(mrc,repFamily) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = repFamily, values_from = n) %>% 
  rowwise() %>% 
 mutate(total= sum(c_across(1:18),na.rm =TRUE)) %>% 
  kable(., caption="Breakdown of DNA counts by Family") %>% 
kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)%>% 
  scroll_box(height = "500px")

Breakdown of DNA counts by Family

mrc	DNA	hAT	hAT-Ac	hAT-Blackjack	hAT-Charlie	hAT-Tip100	PiggyBac	PiggyBac?	TcMar-Mariner	TcMar-Tc2	TcMar-Tigger	hAT-Tip100?	hAT?	MULE-MuDR	TcMar?	PIF-Harbinger	TcMar	TcMar-Pogo	total
EAR_open	2	11	6	11	165	31	1	1	5	1	67	NA	NA	NA	NA	NA	NA	NA	301
EAR_close	4	7	1	21	228	52	1	1	8	3	81	1	NA	NA	NA	NA	NA	NA	408
ESR_open	NA	14	10	27	262	65	6	NA	12	3	141	4	1	1	NA	NA	NA	NA	546
ESR_close	6	19	14	44	496	136	NA	NA	6	6	117	2	5	2	1	NA	NA	NA	854
ESR_OC	1	NA	4	2	75	12	NA	NA	4	5	32	NA	NA	NA	NA	1	NA	NA	136
LR_open	36	52	42	131	1873	370	16	5	55	34	1155	14	12	11	2	NA	1	NA	3809
LR_close	14	33	26	50	813	261	6	1	18	13	273	7	2	3	1	NA	1	NA	1522
NR	61	135	142	371	4804	1132	58	13	106	82	2023	65	25	11	8	2	1	1	9040
all_peaks	127	276	250	670	8893	2097	89	22	219	149	3979	95	45	29	13	3	3	1	16960

eight_retro <- Eight_group_TE %>% 
  dplyr::filter(repClass=="Retroposon") %>% 
  dplyr::filter(mrc != "not_mrc") %>% 
  rbind(., ggretroposon_df) %>% 
  mutate(repName=factor(repName)) %>% 
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
  dplyr::filter(mrc != "h.genome") 

eight_retro %>% 
  ggplot(., aes(x=mrc, fill= repName))+
  geom_bar(position="fill", col="black")+
  theme_classic()+
  ggtitle(paste("Retroposon breakdown by by eight-clusters and Family",per_cov))+
  scale_fill_retroposons()

Past versions of "Retroposon and eight-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

eight_retro %>% 
  group_by(mrc,repName) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = repName, values_from = n) %>% 
  rowwise() %>% 
 mutate(total= sum(c_across(1:6),na.rm =TRUE)) %>% 
  kable(., caption="Breakdown of Retroposon counts by Name") %>% 
kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)%>% 
  scroll_box(height = "500px")

Breakdown of Retroposon counts by Name

mrc	SVA_A	SVA_B	SVA_D	SVA_E	SVA_F	SVA_C	total
EAR_open	1	1	13	1	6	NA	22
EAR_close	1	2	3	1	NA	NA	7
ESR_open	5	1	23	1	8	3	41
ESR_close	3	2	4	1	1	NA	11
ESR_OC	NA	NA	1	NA	NA	1	2
LR_open	8	5	18	1	3	3	38
LR_close	7	3	2	3	1	2	18
NR	22	30	55	10	16	15	148
all_peaks	50	44	121	19	36	25	295

CG islands!

cpgislands_df <- read.delim("data/other_papers/cpg_islands.tsv")
cpg_cCREs_df <- read_delim("data/other_papers/cpg_cCREs.tsv", delim="\t")
# aligncre <- genomation::readBed("data/enhancerdata/ENCFF867HAD_ENCFF152PBB_ENCFF352YYH_ENCFF252IVK.7group.bed") %>% as.data.frame

CPG_promoters_gr <- cpg_cCREs_df %>% 
    dplyr::rename(.,"seqnames"=X1,"start"=X2,"end"=X3,"promotor_name"=X4,"length"=X5,"strand"=X6,"color"=X9) %>% 
  dplyr::filter(color ==25500) %>% 
  dplyr::select(seqnames:strand,color) %>% 
  GRanges() 


Peaks_v_cpgpromo <- join_overlap_intersect(CPG_promoters_gr,Col_TSS_data_gr) %>% as.data.frame

cpg_island_gr <- cpgislands_df %>% 
 makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "chrom", start.field = "chromStart", end.field = "chromEnd",starts.in.df.are.0based=TRUE)
Col_TSS_data_gr$peak_width <- width(Col_TSS_data_gr)
cpg_island_gr$cpg_width <- width(cpg_island_gr)

Col_fullDF_cug_overlap <- join_overlap_intersect(Col_TSS_data_gr,cpg_island_gr)
Col_fullDF_cug_overlap <-Col_fullDF_cug_overlap %>% 
  as.data.frame %>% 
  mutate(per_ol=width/cpg_width)


Col_fullDF_cug_overlap %>% 
  as.data.frame() %>% 
    # group_by(name) %>%
  distinct(Peakid) %>% 
  tally %>% 
  kable(., caption="Count of peaks with CG islands") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)%>% 
  scroll_box(height = "500px")

Count of peaks with CG islands

n
18769

Col_fullDF_cug_overlap %>% 
  as.data.frame() %>% 
  dplyr::filter(per_ol>0.5) %>% 
  distinct(Peakid) %>% 
  tally %>% 
  kable(., caption="Count of peaks with >50% of CG islands") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)%>% 
  scroll_box(height = "500px")

Count of peaks with >50% of CG islands

n
15310

# CUG_mrc_status_list <-
# Col_TSS_data_gr%>% 
#   as.data.frame() %>%
#   left_join(., (Col_fullDF_cug_overlap %>% as.data.frame(.)), by =c("seqnames"="seqnames","start"="start","end"="end","Peakid"="Peakid", "NCBI_gene"="NCBI_gene", "ensembl_ID"="ensembl_ID","dist_to_NG"="dist_to_NG",  "SYMBOL" = "SYMBOL", "peak_width"="peak_width")) %>% 
#   left_join(., (Peaks_v_cpgpromo %>% dplyr::select(promotor_name,Peakid,peak_width)), by=c("peak_width"="peak_width","Peakid"="Peakid")) %>% 
#   dplyr::select(Peakid, name,cpgNum:promotor_name) %>% 
#   mutate(cugstatus=if_else(is.na(cpgNum),"not_CGi_peak","CGi_peak")) %>% 
#   mutate(prom_status= if_else(is.na(promotor_name),"not_CpGpromo","CpGpromo")) %>% 
#    mutate(mrc=if_else(Peakid %in% EAR_df$id, "EAR",
#                      if_else(Peakid %in% ESR_df$id,"ESR",
#                              if_else(Peakid %in% LR_df$id,"LR",
#                                      if_else(Peakid %in% NR_df$id,"NR","not_mrc"))))) %>% distinct()
# 


CUG_mrc_nine_list <-
Col_TSS_data_gr%>% as.data.frame() %>%
  left_join(., (Col_fullDF_cug_overlap %>% as.data.frame(.)), by =c("seqnames"="seqnames","start"="start","end"="end","Peakid"="Peakid", "NCBI_gene"="NCBI_gene", "dist_to_NG"="dist_to_NG",  "SYMBOL" = "SYMBOL", "peak_width"="peak_width")) %>% 
  left_join(., (Peaks_v_cpgpromo %>% dplyr::select(promotor_name,Peakid,peak_width)), by=c("peak_width"="peak_width","Peakid"="Peakid")) %>% 
  dplyr::select(Peakid, name,cpgNum:promotor_name) %>% 
  mutate(cugstatus=if_else(is.na(cpgNum),"not_CGi_peak","CGi_peak")) %>% 
  mutate(prom_status= if_else(is.na(promotor_name),"not_CpGpromo","CpGpromo")) %>% 
   mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
                      if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
                              if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
                                      if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
                                              if_else(Peakid %in% ESR_OC$Peakid,"ESR_OC",
                                                      if_else(Peakid %in% LR_open$Peakid,"LR_open",
                                                                      if_else(Peakid %in% LR_close$Peakid,"LR_close",
                                                                              if_else(Peakid %in% NR_df$Peakid,"NR","not_mrc"))))))))) %>%
  distinct()

# 
# CUG_mrc_status_list %>% 
#  group_by(cugstatus, mrc) %>% 
#   distinct(Peakid) %>% 
#  count %>% 
#   pivot_wider(., id_cols = mrc, names_from = cugstatus, values_from = n) %>% 
#   kable(., caption="Breakdown of CG islands overlap four groups") %>% 
# kable_paper("striped", full_width = TRUE) %>%
#   kable_styling(full_width = FALSE, font_size = 14)

# CUG_mrc_status_list %>% 
#   mutate(mrc=factor(mrc, levels = c("NR", "EAR", "ESR","LR","not_mrc"))) %>%
#   group_by(cugstatus, mrc) %>% 
#   ggplot(., aes(x = mrc,  fill = cugstatus)) +
#   geom_bar(position="fill",color = "black")+
#   theme_bw()+
#   ggtitle("CG islands by mrc")
          # subtitle=paste((CUG_mrc_status_list %>% dplyr::filter(cugstatus=="CGi_peak") %>% count(cugstatus))$n))
  
CUG_mrc_nine_list %>%
  distinct(Peakid,.keep_all = TRUE) %>%
  mutate(mrc="full_list") %>%
  rbind(., (CUG_mrc_nine_list %>% distinct(Peakid,.keep_all = TRUE))) %>%
   mutate(mrc=factor(mrc, levels=c("EAR_open","EAR_close","ESR_open","ESR_close","ESR_OC","LR_open","LR_close","NR","not-mrc","full_list"))) %>%
  dplyr::filter(mrc !="not_mrc") %>%
  group_by(cugstatus, mrc) %>%
  ggplot(., aes(x = mrc,  fill = cugstatus)) +
  geom_bar(position="fill",color = "black")+
  theme_bw()+
  ggtitle("CG islands by mrc")

Past versions of "cug development-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

# subtitle=paste((CUG_mrc_nine_list %>% dplyr::filter(cugstatus=="CGi_peak") %>% count(cugstatus))$n, "CG island peaks"))
    
CUG_mrc_nine_list %>% 
  distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc="full_list") %>% 
  rbind(., (CUG_mrc_nine_list %>% distinct(Peakid,.keep_all = TRUE))) %>% 
   mutate(mrc=factor(mrc, levels=c("EAR_open","EAR_close","ESR_open","ESR_close","ESR_OC","LR_open","LR_close","NR","not-mrc","full_list"))) %>%
  dplyr::filter(mrc !="not_mrc") %>% 
  group_by(cugstatus, mrc) %>% 
  tally %>% 
  pivot_wider(., id_cols = mrc, names_from = cugstatus, values_from = n) %>% 
  kable(., caption="Breakdown of CG islands overlap with not_mrc removed") %>% 
kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14)%>% 
  scroll_box(height = "500px")

Breakdown of CG islands overlap with not_mrc removed

mrc	CGi_peak	not_CGi_peak
EAR_open	81	3077
EAR_close	17	4279
ESR_open	139	5133
ESR_close	71	9278
LR_open	307	28230
LR_close	102	13970
NR	1265	85063
full_list	1982	150190
ESR_OC	NA	1160

Col_fullDF_cug_overlap %>% 
        as.data.frame %>% 
        ggplot(., aes (x = width))+
        geom_density(color="darkblue",fill="lightblue",aes(alpha = 0.5))+
  theme_classic()+
  ggtitle("Distribution of CGisland overlap widths",subtitle = " limited x axis")+
  coord_cartesian(xlim= c(0,2500))

Past versions of "cug eight stuff-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

cpg_island_gr %>% 
  as.data.frame() %>% 
  ggplot(., aes (x = cpg_width))+
        geom_density(aes(alpha = 0.5))+
  theme_classic()+
  ggtitle("Distribution of overlap widths of CGislands ",subtitle = " limited x axis")+
  coord_cartesian(xlim= c(0,2500))

Past versions of "cug eight stuff-2.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
6d65dd6	reneeisnowhere	2024-09-09

# CUG_mrc_status_list %>% 
#    mutate(mrc="full_list") %>% 
#   rbind(., CUG_mrc_status_list) %>% 
#    mutate(mrc=factor(mrc, levels=c("EAR","ESR","LR","NR","not-mrc","full_list"))) %>% 
#   dplyr::filter(mrc !="not_mrc") %>% 
#   dplyr::filter(cugstatus=="CGi_peak") %>% 
#   ggplot(., aes(x = mrc,  fill = prom_status)) +
#   geom_bar(position="fill",color = "black")+
#   theme_bw()+
#   ggtitle("CG islands promotors vs non-promotor CpGi by mrc", subtitle=paste(length(CUG_mrc_status_list$Peakid )))


promo_count_list <- CUG_mrc_nine_list %>% 
  dplyr::filter(mrc !="not_mrc") %>% 
  dplyr::filter(cugstatus=="CGi_peak")  %>%
  group_by(prom_status) %>% 
  tally()
  

CUG_mrc_nine_list %>%
   mutate(mrc="full_list") %>%
  rbind(., CUG_mrc_nine_list) %>%
   mutate(mrc=factor(mrc, levels=c("EAR_open","EAR_close","ESR_open","ESR_close","ESR_OC","LR_open","LR_close","NR","not-mrc","full_list"))) %>%
  dplyr::filter(mrc !="not_mrc") %>%
  dplyr::filter(cugstatus=="CGi_peak") %>%
  ggplot(., aes(x = mrc,  fill = prom_status)) +
  geom_bar(position="fill",color = "black")+
  theme_bw()+
  ggtitle("CG islands promotors vs non-promotor CpGi by mrc", subtitle=paste(promo_count_list[1,1],promo_count_list[1,2],"\n", promo_count_list [2,1],promo_count_list [2,2]))

Past versions of "cug eight stuff-3.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
d6fe7e3	reneeisnowhere	2024-10-07
23374bd	reneeisnowhere	2024-09-13
6d65dd6	reneeisnowhere	2024-09-09

making of DCM SNP df

# saveRDS(DCM_gwas,"data/other_papers/DCM_gwas.RDS")
gwas_DCM <- readRDS("data/other_papers/DCM_gwas.RDS")
# DCM_gwas %>%
#   dplyr::select(CHR_ID,CHR_POS,SNPS) %>%
#   na.omit() %>%
#   distinct()

SNP

Knowles_eQTL <- readRDS("data/Knowles_5.RDS")
Knowles_beQTL <- readRDS("data/Knowles_4.RDS")
gwas_ACtox <- readRDS("data/gwas_1_dataframe.RDS")  
gwas_ARR <- readRDS("data/gwas_2_dataframe.RDS")
gwas_ACresp <- readRDS("data/gwas_3_dataframe.RDS")
gwas_HD <- readRDS("data/gwas_4_dataframe.RDS")
gwas_HF <- readRDS("data/gwas_5_dataframe.RDS")
gwas_CAD <- readRDS( "data/CAD_gwas_dataframe.RDS")
gwas_MI <- readRDS("data/MI_gwas.RDS")
gwas_DCM <- readRDS("data/other_papers/DCM_gwas.RDS")

gwas_snp_list <- gwas_ACtox %>%
  distinct(SNPS,.keep_all = TRUE) %>% 
  dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
  mutate(gwas="ACtox") %>% 
  rbind(gwas_ARR %>% 
          distinct(SNPS,.keep_all = TRUE) %>%
          dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
          mutate(gwas="ARR")) %>% 
  rbind(gwas_ACresp %>% 
          distinct(SNPS,.keep_all = TRUE) %>%
          dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
          mutate(gwas="ACresp")) %>% 
  rbind(gwas_HD %>% 
          distinct(SNPS,.keep_all = TRUE) %>%
          dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
          mutate(gwas="HD")) %>% 
  rbind(gwas_HF %>% 
          distinct(SNPS,.keep_all = TRUE) %>%
          dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
          mutate(gwas="HF")) %>% 
  rbind(gwas_CAD %>% 
          distinct(SNPS,.keep_all = TRUE) %>%
          dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
          mutate(gwas="CAD")) %>% 
  rbind(gwas_MI %>% 
          distinct(SNPS,.keep_all = TRUE) %>%
          dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
          mutate(gwas="MI")) %>% 
  rbind(gwas_DCM %>% 
          distinct(SNPS,.keep_all = TRUE) %>%
          dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
          mutate(gwas="DCM")) %>% 
  rbind(Knowles_eQTL %>% 
          distinct(RSID,.keep_all = TRUE) %>%
          mutate(CHR_ID=(gsub("chr","",chr))) %>% 
          dplyr::rename("SNPS"=RSID,"CHR_POS"=pos) %>% 
          dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
          mutate(gwas="eQTL")) %>% 
  rbind(Knowles_beQTL %>% 
          distinct(RSID,.keep_all = TRUE) %>%
          mutate(CHR_ID=(gsub("chr","",chr))) %>% 
          dplyr::rename("SNPS"=RSID,"CHR_POS"=pos) %>% 
          dplyr::select(CHR_ID, CHR_POS,SNPS) %>% 
          mutate(gwas="beQTL")) %>% 
  separate_longer_delim(.,col= c(CHR_ID,CHR_POS,SNPS), delim= ";")

gwas_snp_gr <-  gwas_snp_list %>% 
   mutate(CHR_ID=as.numeric(CHR_ID), CHR_POS=as.numeric(CHR_POS)) %>% 
  na.omit() %>%
   mutate(start=CHR_POS, end=CHR_POS, chr=paste0("chr",CHR_ID)) %>% 
  GRanges()
# rtracklayer::export.bed(gwas_snp_gr,con="data/full_bedfiles/GWAS_SNP.bed",format="bed")

gwas_snp_5k_gr <- gwas_snp_list %>% 
   mutate(CHR_ID=as.numeric(CHR_ID), CHR_POS=as.numeric(CHR_POS)) %>% 
  na.omit() %>%
   mutate(start=CHR_POS-5000, end=CHR_POS+5000, chr=paste0("chr",CHR_ID)) %>% 
  GRanges()

# 
# findOverlaps(gwas_snp_gr, all_TEs_gr)
test <- join_overlap_intersect(gwas_snp_gr, all_TEs_gr) %>% GRanges
##3413- (#3432 after separate)

test_new <-  test %>% 
   as.data.frame %>% 
   dplyr::select(seqnames:gwas,repName:repFamily) %>% 
   GRanges()
peaks <-
  Collapsed_peaks %>% 
    dplyr::select(chr:Peakid) %>% 
    GRanges()
peak_test <- join_overlap_intersect(test_new, peaks)

# peak_test 135

Col_fullDF_overlap %>% 
  as.data.frame %>% 
  dplyr::select(seqnames:Peakid,repName:repFamily) %>% 
  GRanges() %>% 
  join_overlap_intersect(.,gwas_snp_gr)

GRanges object with 148 ranges and 8 metadata columns:
        seqnames    ranges strand |                 Peakid     repName
           <Rle> <IRanges>  <Rle> |            <character> <character>
    [1]     chr1  16012818      * | chr1.16012567.16013729        MIRb
    [2]     chr1 170224718      * | chr1.170224576.17022..       L1MA7
    [3]     chr1 170224718      * | chr1.170224576.17022..       L1MA7
    [4]     chr1 235491538      * | chr1.235491451.23549..          L2
    [5]    chr10  20953453      * | chr10.20953148.20953..       MLT1B
    ...      ...       ...    ... .                    ...         ...
  [144]     chr8 124847608      * | chr8.124847104.12484..     MamTip2
  [145]     chr8 124847608      * | chr8.124847104.12484..     MamTip2
  [146]     chr9 107755513      * | chr9.107755276.10775..  Charlie13a
  [147]     chr9 107755513      * | chr9.107755276.10775..  Charlie13a
  [148]     chr9 123933491      * | chr9.123933461.12393..       MLT1J
           repClass   repFamily    CHR_ID   CHR_POS        SNPS        gwas
        <character> <character> <numeric> <numeric> <character> <character>
    [1]        SINE         MIR         1  16012818  rs10927886          HD
    [2]        LINE          L1         1 170224718  rs12122060         ARR
    [3]        LINE          L1         1 170224718  rs12122060          HD
    [4]        LINE          L2         1 235491538    rs291400        eQTL
    [5]         LTR   ERVL-MaLR        10  20953453   rs7910227         ARR
    ...         ...         ...       ...       ...         ...         ...
  [144]         DNA  hAT-Tip100         8 124847608  rs34866937          HD
  [145]         DNA  hAT-Tip100         8 124847608  rs34866937          HF
  [146]         DNA hAT-Charlie         9 107755513    rs944172          HD
  [147]         DNA hAT-Charlie         9 107755513    rs944172         CAD
  [148]         LTR   ERVL-MaLR         9 123933491  rs10818894      ACresp
  -------
  seqinfo: 23 sequences from an unspecified genome; no seqlengths

test2 <- join_overlap_intersect(peaks, gwas_snp_gr) 

test2_5k <- join_overlap_intersect(peaks, gwas_snp_5k_gr) 
  # saveRDS(SNP_df,"data/Final_four_data/SNP_table_collapesed.RDS")
test2 %>% 
   join_overlap_intersect(., all_TEs_gr) %>% 
  as.data.frame %>% 
  dplyr::select(seqnames:gwas,repName:repFamily) %>% 
  mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
                      if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
                              if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
                                      if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
                                              if_else(Peakid %in% ESR_opcl$Peakid,"ESR_opcl",
                                                      if_else(Peakid %in% LR_open$Peakid,"LR_open",
                                                                      if_else(Peakid %in% LR_close$Peakid,"LR_close",
                                                                              if_else(Peakid %in% NR_df$Peakid,"NR",if_else(Peakid %in% ESR_clop$Peakid,"ESR_clop","not_mrc")))))))))) %>%
  # distinct(Peakid, .keep_all = TRUE) %>% 
  group_by(gwas,mrc) %>% 
  tally

# A tibble: 32 × 3
# Groups:   gwas [9]
   gwas   mrc           n
   <chr>  <chr>     <int>
 1 ACresp LR_open       2
 2 ARR    ESR_close     2
 3 ARR    LR_close      4
 4 ARR    LR_open       3
 5 ARR    NR           12
 6 ARR    not_mrc       1
 7 CAD    EAR_close     1
 8 CAD    EAR_open      1
 9 CAD    ESR_close     2
10 CAD    LR_close      4
# ℹ 22 more rows

SNP_df <- test2 %>% 
   join_overlap_intersect(., all_TEs_gr) %>% 
  as.data.frame %>% 
  dplyr::select(seqnames:gwas,repName:repFamily) %>% 
   mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
                      if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
                              if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
                                      if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
                                              if_else(Peakid %in% ESR_opcl$Peakid,"ESR_opcl",
                                                      if_else(Peakid %in% LR_open$Peakid,"LR_open",
                                                                      if_else(Peakid %in% LR_close$Peakid,"LR_close",
                                                                              if_else(Peakid %in% NR_df$Peakid,"NR",if_else(Peakid %in% ESR_clop$Peakid,"ESR_clop","not_mrc")))))))))) 

SNP_df %>%  group_by(Peakid) %>%
    summarise(snp_id=paste(unique(SNPS), collapse = ","),
              gwas=paste(unique(gwas),collapse=","),
              repName = paste(unique(repName),collapse=","),
              mrc =paste(unique(mrc),collapse=","),
              repFamily= paste(unique(repFamily),collapse = ","),
              location_chr= paste(unique(CHR_ID),collapse = ",") ,
              location= paste(unique(CHR_POS),collapse = ",") ,
              ) %>% 
  kable(., caption = "The output of all SNPs and their SNP category followed by location and peak") %>% 
  
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) %>% 
  scroll_box(height = "500px")

The output of all SNPs and their SNP category followed by location and peak

Peakid	snp_id	gwas	repName	mrc	repFamily	location_chr	location
chr1.16012567.16013729	rs10927886	HD	MIRb	ESR_close	MIR	1	16012818
chr1.170224576.170224916	rs12122060	ARR,HD	L1MA7	LR_close	L1	1	170224718
chr1.235491451.235491958	rs291400	eQTL	L2	NR	L2	1	235491538
chr1.55055575.55055793	rs472495	HD,CAD	MLT2D	not_mrc	ERVL	1	55055640
chr10.103712814.103713354	rs10509768	ARR,HD	MIRb	NR	MIR	10	103713072
chr10.121155583.121156319	rs17101521	HD,CAD	LTR16A2	NR	ERVL	10	121156039
chr10.20953148.20953475	rs7910227	ARR,HD	MLT1B	LR_close	ERVL-MaLR	10	20953453
chr11.100753128.100753902	rs7947761	HD,CAD	L1PBa	NR	L1	11	100753868
chr11.118911506.118912630	rs11606719	HD,CAD	MIRb	NR	MIR	11	118911765
chr11.128759383.128760154	rs672149	HD	L2	NR	L2	11	128759487
chr11.19988504.19989024	rs4757877,rs2625322	ARR,HD	AmnSINE1	LR_close	5S-Deu-L2	11	19988745,19988805
chr11.90455310.90455981	rs534128177	HD,CAD	LTR14B	NR	ERVK	11	90455679
chr11.9748359.9748943	rs472109	HD,CAD	LTR41	LR_close	ERVL	11	9748771
chr12.106865628.106866040	rs7977247	HD,HF	L2a	LR_close	L2	12	106865692
chr12.109538192.109538640	rs75524776	HD,CAD	MIRb	LR_close	MIR	12	109538471
chr12.111171885.111172119	rs3809297	ARR,HD	(TGCGTG)n	not_mrc	Simple_repeat	12	111171923
chr12.111569574.111570394	rs653178	HD,MI	MER3	NR	hAT-Charlie	12	111569952
chr12.20004923.20005338	rs11044977	HD,MI	L2a	NR	L2	12	20005226
chr12.21570414.21570741	rs7976688	beQTL	L2	NR	L2	12	21570733
chr12.24561685.24562685	rs2291437	ARR,HD	(CCACCTC)n	NR	Simple_repeat	12	24562114
chr13.110301444.110302036	rs4773141	HD,CAD	L2	NR	L2	13	110302006
chr13.21536977.21537596	rs11841562	ARR,HD	L2	LR_open	L2	13	21537382
chr13.22794559.22794879	rs9506925	ARR,HD	OldhAT1	NR	hAT-Ac	13	22794804
chr13.30740138.30740672	rs3885907	ACresp	MIR	LR_open	MIR	13	30740318
chr14.23379917.23380414	rs77265383	eQTL	MIR3	ESR_close	MIR	14	23380274
chr14.58326948.58327320	rs2145598	HD,CAD	MER3	NR	hAT-Charlie	14	58327283
chr15.70171390.70172398	rs2415081	ARR,HD	MIRb	NR	MIR	15	70171653
chr15.90885954.90886257	rs4932373	HD,CAD	MIR	LR_close	MIR	15	90886057
chr16.4624324.4626024	rs8056746	eQTL	MIR3	NR	MIR	16	4625721
chr17.17823556.17824258	rs12936927	HD,CAD	(CGCCC)n	ESR_close	Simple_repeat	17	17823651
chr17.2867997.2868307	rs12603284	ARR,HD	MamRTE1	NR	RTE-BovB	17	2868218
chr18.35089781.35090661	rs476348	HD	L1MB7	NR	L1	18	35090057
chr18.45565618.45565968	rs2852306	HD	MIR3	EAR_close	MIR	18	45565696
chr19.18478653.18479216	rs11670056	HD,CAD	MER20	LR_open	hAT-Charlie	19	18479133
chr19.41352378.41354231	rs1800470	HD,CAD	(CAGCAG)n	NR	Simple_repeat	19	41353016
chr19.4139628.4140643	rs164632	eQTL	L2a	NR	L2	19	4139852
chr2.25936965.25937466	rs6546620	ARR,HD	MIRb	NR	MIR	2	25937071
chr2.27262237.27263756	rs6759518	ARR,HD,HF,CAD	MIRc	NR	MIR	2	27263727
chr2.28654693.28655341	rs17742402	beQTL	L2c	NR	L2	2	28654817
chr2.36922199.36922493	rs11124554	HD,HF	AluJr	NR	Alu	2	36922355
chr2.60391661.60392192	rs243071	HD,CAD	MIRb	LR_open	MIR	2	60391893
chr2.69298223.69299291	rs7424376	eQTL	MLT1F2	NR	ERVL-MaLR	2	69298791
chr2.86367009.86367615	rs72926475	ARR,HD	MIR	ESR_close	MIR	2	86367364
chr20.25237572.25238291	rs6132819	eQTL,beQTL	L1ME3	LR_open	L1	20	25237982
chr21.14118943.14119390	rs57346421	HD,HF	HERV1_I-int	NR	ERV1	21	14119015
chr21.29162621.29163485	rs73193808	HD,CAD	AluSz6	NR	Alu	21	29162981
chr21.34746498.34746999	rs2834618	ARR,HD	MIRc	ESR_close	MIR	21	34746814
chr22.38435884.38436418	rs2267386	HD	MIR	NR	MIR	22	38436107
chr3.123019226.123019547	rs7632505	ARR,HD,HF,CAD	AluJb	NR	Alu	3	123019460
chr3.136350085.136351911	rs667920	HD,CAD	L1M4b	NR	L1	3	136350630
chr3.14216199.14216968	rs62232870	HD,DCM	MLT1K	NR	ERVL-MaLR	3	14216209
chr3.151483988.151484643	rs4387942	HD,CAD	L1PA7	ESR_close	L1	3	151484399
chr3.169478628.169479748	rs2421649	HD	L2b	NR	L2	3	169479545
chr3.171398436.171398816	rs10936682	beQTL	L2b	ESR_close	L2	3	171398814
chr3.57959935.57960395	rs1522387	HD	MLT1K	NR	ERVL-MaLR	3	57960369
chr4.148015916.148016422	rs10213171	ARR,HD	AluJr4	LR_open	Alu	4	148016386
chr4.156642161.156642803	rs17035016	eQTL	MER5A	LR_open	hAT-Charlie	4	156642756
chr4.1683470.1685120	rs798726	beQTL	HY1	LR_close	scRNA	4	1683484
chr4.168766280.168767270	rs7696431,rs869396	HD,CAD	L3	LR_open	CR1	4	168766574,168766849
chr4.76495482.76496240	rs2068063	HD,MI	L2	not_mrc	L2	4	76496050
chr5.115543502.115545233	rs13177180	HD	G-rich	NR	Low_complexity	5	115544896
chr5.135458929.135459424	rs899162	HD,CAD	L2c	NR	L2	5	135459219
chr5.138068694.138070268	rs141654122	ARR,HD	SVA_D	NR	SVA	5	138070140
chr5.52859657.52860199	rs73102285	HD,CAD	L3	NR	CR1	5	52859808
chr6.118252411.118253042	rs281868	ARR,HD	L2b	LR_open	L2	6	118252898
chr6.134047673.134047938	rs965652	HD,CAD	MamRep1894	NR	hAT	6	134047815
chr6.134058572.134059383	rs2627230	beQTL	Arthur1B	NR	hAT-Tip100	6	134058731
chr6.28269507.28270003	rs1225600	HD,CAD	MLT2B4	LR_open	ERVL	6	28269667
chr6.39166177.39166915	rs56336142	HD,CAD	MIRc	NR	MIR	6	39166323
chr7.100243501.100243833	rs117038461	HD,CAD	L1M5	EAR_close	L1	7	100243731
chr7.12431886.12432380	rs1071035	beQTL	L1PA6	NR	L1	7	12432123
chr7.129395086.129395773	rs117106946	eQTL	L1MCc	NR	L1	7	129395275
chr7.36459124.36459918	rs192407614	HD,CAD	LTR38B	EAR_open	ERV1	7	36459695
chr7.836506.836873	rs11768850	ARR,HD	MLT2B4	NR	ERVL	7	836590
chr7.92620778.92621787	rs42044	ARR,HD	AluJb	NR	Alu	7	92620826
chr7.93713592.93714106	rs376825901	HD,CAD	Tigger1	NR	TcMar-Tigger	7	93714028
chr7.99822872.99823551	rs62471956	HD,CAD	MER52A	LR_close	ERV1	7	99823462
chr8.124847104.124848853	rs35006907,rs34866937	ARR,HD,HF	MamTip2	NR	hAT-Tip100	8	124847575,124847608
chr8.20007264.20008372	rs2083636,rs894211	HD,CAD	MER34A,LTR48	NR	ERV1	8	20007752,20008236
chr8.72542614.72542913	rs16938235	eQTL	L2c	NR	L2	8	72542629
chr9.107755276.107755816	rs944172	HD,CAD	Charlie13a	LR_open	hAT-Charlie	9	107755513
chr9.123933461.123933812	rs10818894	ACresp	MLT1J	LR_open	ERVL-MaLR	9	123933491

# SNP_df %>%  group_by(Peakid) %>%
#     summarise(snp_id=paste(unique(SNPS), collapse = ","),
#               gwas=paste(unique(gwas),collapse=","),
#               repName = paste(unique(repName),collapse=","),
#               mrc =paste(unique(mrc),collapse=","),
#               repFamily= paste(unique(repFamily),collapse = ","),
#               location_chr= paste(unique(CHR_ID),collapse = ";") ,
#               location= paste(unique(CHR_POS),collapse = ";") ,
#               ) %>%
# write.csv(.,"data/SNP_GWAS_PEAK_MRC_id.csv")
# rtracklayer::export(ESR_open,con = "data/Final_four_data/meme_bed/ESR_open.bed", format="bed", ignore.strand = FALSE)
# 
# rtracklayer::export(ESR_close,con = "data/Final_four_data/meme_bed/ESR_close.bed", format="bed", ignore.strand = FALSE)
# 
# rtracklayer::export(ESR_OC,con = "data/Final_four_data/meme_bed/ESR_OC.bed", format="bed", ignore.strand = FALSE)
# rtracklayer::export(EAR_open,con = "data/Final_four_data/meme_bed/EAR_open.bed", format="bed", ignore.strand = FALSE)
# rtracklayer::export(EAR_close,con = "data/Final_four_data/meme_bed/EAR_close.bed", format="bed", ignore.strand = FALSE)
# 
# rtracklayer::export(LR_open,con = "data/Final_four_data/meme_bed/LR_open.bed", format="bed", ignore.strand = FALSE)
# rtracklayer::export(LR_close,con = "data/Final_four_data/meme_bed/LR_close.bed", format="bed", ignore.strand = FALSE)
# 
# rtracklayer::export(NR_df,con = "data/Final_four_data/meme_bed/NR_df.bed", format="bed", ignore.strand = FALSE)

SNP annotation file

SNPanno <- 
  test2 %>% 
  as.data.frame() %>% 
  dplyr::select(Peakid,SNPS,gwas) %>% 
 mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
                      if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
                              if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
                                      if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
                                              if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl",
                                                      if_else(Peakid %in% LR_open$Peakid,"LR_open",
                                                                      if_else(Peakid %in% LR_close$Peakid,"LR_close",
                                                                              if_else(Peakid %in% NR_df$Peakid,"NR",if_else(Peakid %in% ESR_D$Peakid,"ESR_clop","not_mrc")))))))))) %>%
  left_join(Col_fullDF_cug_overlap) %>% 
  mutate(has_cpg= if_else(is.na(name),"not_CpGi","CpGi")) %>% 
  dplyr::select(Peakid:mrc,has_cpg,name,per_ol) %>% 
  dplyr::rename("CpG"="has_cpg","cpg_per_ol"="per_ol","CpG_name"="name") %>%
  left_join(., Peaks_v_cpgpromo, by=c("Peakid"="Peakid"))%>% 
    dplyr::select(Peakid:cpg_per_ol,promotor_name) %>% 
    mutate(CpG_promo=if_else(is.na(promotor_name),"not_CpGpromo","CpGpromo")) %>% 
  left_join(.,Filter_TE_list, by=c(Peakid="Peakid"))%>% 
  dplyr::select(SNPS, Peakid,gwas:CpG_promo,repName:repFamily, per_ol) %>% 
  dplyr::rename("TE_per_ol"="per_ol") %>% 
    group_by(SNPS) %>% 
    summarise(Peakid=paste(unique(Peakid), collapse = ","),
              gwas=paste(unique(gwas),collapse=","),
              mrc=paste(unique(mrc),collapse=","),
               CpG=paste(unique(CpG),collapse=","),
               CpG_name=paste(unique(CpG_name),collapse=","),
               cpg_per_ol=paste(unique(cpg_per_ol),collapse=","),
               promotor_name=paste(unique(promotor_name),collapse=","),
               CpG_promo=paste(unique(CpG_promo),collapse=","),
               repName=paste(unique(repName),collapse=","),
               repClass=paste(unique(repClass),collapse=","),
               repFamily=paste(unique(repFamily),collapse=","),
               TE_per_ol=paste(unique(TE_per_ol),collapse=";"))
              
# write.csv(SNPanno,"data/Final_four_data/annotated_gwas_SNPS.csv")

SNPanno %>% 
  kable(., caption = "SNPs and their annotations from my data") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) %>% 
  scroll_box(height = "500px")

SNPs and their annotations from my data

SNPS	Peakid	gwas	mrc	CpG	CpG_name	cpg_per_ol	promotor_name	CpG_promo	repName	repClass	repFamily	TE_per_ol
rs10083696	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs10083697	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs10114096	chr9.111598949.111599915	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1MA7,(GCCCGCC)n,(GCCC)n,(TG)n,MER4-int	LINE,Simple_repeat,LTR	L1,Simple_repeat,ERV1	0.348936170212766;1
rs10121140	chr9.14292492.14292732	HD,CAD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs10213171	chr4.148015916.148016422	ARR,HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	AluJr4	SINE	Alu	0.673400673400673
rs10213376	chr4.148015002.148015341	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(TCTCCTG)n,MIR3	Simple_repeat,SINE	Simple_repeat,MIR	1;0.135714285714286
rs1032763	chr5.17118580.17119099	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs10456100	chr6.39214962.39215733	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3	SINE	MIR	0.820809248554913
rs1049334	chr7.116560073.116560553	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs10509768	chr10.103712814.103713354	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb,MIR3	SINE	MIR	1;0.0384615384615385
rs1052586	chr17.46940653.46941215	HD,MI	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs1071035	chr7.12431886.12432380	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1PA6	LINE	L1	0.104364326375712
rs10734649	chr11.9758098.9760569	HD,CAD	NR	CpGi	CpG: 72	1	NA	not_CpGpromo	(GTGGC)n,MIR,GA-rich,L2c	Simple_repeat,SINE,Low_complexity,LINE	Simple_repeat,MIR,Low_complexity,L2	1
rs10786662	chr10.102229686.102230890	ARR,HD	NR	CpGi	CpG: 141	0.268564356435644	NA	not_CpGpromo	MIR3,(GGC)n,(GCCCGG)n	SINE,Simple_repeat	MIR,Simple_repeat	1
rs10790282	chr11.119101379.119102775	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(GCCCCTT)n	Simple_repeat	Simple_repeat	1
rs10811650	chr9.22067279.22067652	HD,CAD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs10818576	chr9.121650071.121650712	HD,CAD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MER30,MIR3	DNA,SINE	hAT-Charlie,MIR	0.256198347107438;1
rs10818579	chr9.121651049.121653070	HD,MI	NR	CpGi	CpG: 78	1	EH38E2724036	CpGpromo	GA-rich,MIRb,L3	Low_complexity,SINE,LINE	Low_complexity,MIR,CR1	1
rs10818894	chr9.123933461.123933812	ACresp	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1J	LTR	ERVL-MaLR	0.698412698412698
rs10821415	chr9.94950339.94951513	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc,MIRb	SINE	MIR	0.746543778801843;1;0.633484162895928
rs10824026	chr10.73660865.73661568	ARR,HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	AluY,L1MA4A,AluSz	SINE,LINE	Alu,L1	0.342948717948718;1;0.164634146341463
rs10871753	chr18.58289003.58291154	HD,HF	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	L2a,MLT1I	LINE,LTR	L2,ERVL-MaLR	1
rs10882903	chr10.97355743.97356300	eQTL,beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs10927886	chr1.16012567.16013729	HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb,MIR3,L2b	SINE,LINE	MIR,L2	1;0.686567164179104
rs10931898	chr2.200305915.200307710	ARR,HD	NR	CpGi	CpG: 150	0.954334365325077	EH38E2065239	CpGpromo	(GGCG)n,(CGGCCC)n,(CGCCCG)n	Simple_repeat	Simple_repeat	1
rs10936682	chr3.171398436.171398816	beQTL	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	L2b	LINE	L2	0.149425287356322
rs11038225	chr11.44955010.44955513	HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb	SINE	MIR	0.121848739495798
rs11044977	chr12.20004923.20005338	HD,MI	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MER85,L2a	DNA,LINE	PiggyBac,L2	1
rs11054833	chr12.12349737.12350701	HD,CAD	NR	CpGi	CpG: 61	1	EH38E1593399	CpGpromo	L1ME4b	LINE	L1	1
rs11066791	chr12.113856007.113856293	eQTL	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs11124554	chr2.36922199.36922493	HD,HF	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1MC4,AluJr	LINE,SINE	L1,Alu	0.0381231671554252;0.842622950819672
rs11180610	chr12.75646380.75646944	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	Tigger19b	DNA	TcMar-Tigger	0.802083333333333
rs1122608	chr19.11052376.11052994	HD,CAD,MI	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluJr	SINE	Alu	0.244897959183673
rs11235604	chr11.72821745.72822900	HD,CAD	NR	CpGi	CpG: 111	0.847676419965577	NA	not_CpGpromo	NA	NA	NA	NA
rs11242465	chr5.139426247.139426836	HD,HF,beQTL	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	Alu,AluSz6	SINE	Alu	1;0.72463768115942
rs112577387	chr4.22625204.22625843	HD,HF	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc	SINE	MIR	0.811188811188811
rs1127818	chr1.25819087.25821067	beQTL	NR	CpGi	CpG: 120	1	EH38E1329915,EH38E1329916,EH38E1329917	CpGpromo	MER45A,(GT)n,MIR1_Amn	DNA,Simple_repeat,SINE	hAT-Tip100,Simple_repeat,MIR	0.279761904761905;1
rs112941079	chr5.9544368.9546915	HD,CAD	NR	CpGi	CpG: 138,CpG: 25	1	NA	not_CpGpromo	(GGAGCGG)n,(CCG)n,(GCCCC)n	Simple_repeat	Simple_repeat	1
rs112941127	chr2.217868752.217869273	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb	SINE	MIR	0.220883534136546
rs112949822	chr5.108747709.108749572	HD,CAD	NR	CpGi	CpG: 110	1	NA	not_CpGpromo	L2c	LINE	L2	1
rs113140904	chr5.9544368.9546915	HD,CAD	NR	CpGi	CpG: 138,CpG: 25	1	NA	not_CpGpromo	(GGAGCGG)n,(CCG)n,(GCCCC)n	Simple_repeat	Simple_repeat	1
rs113452171	chr7.91784539.91784870	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs113716316	chr1.27601871.27602613	HD,CAD,MI	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(CCAGC)n,(TCCCGC)n	Simple_repeat	Simple_repeat	1
rs113819537	chr12.26194928.26196665	ARR,HD,HF	NR	CpGi	CpG: 74	1	EH38E1600228	CpGpromo	AluJr,(CACC)n,(CTG)n	SINE,Simple_repeat	Alu,Simple_repeat	0.229452054794521;1
rs113920486	chr10.52539479.52540028	HD	ESR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MamGypLTR1d	LTR	Gypsy	0.175572519083969
rs11398961	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs114192718	chr2.128027137.128028647	HD,CAD	NR	CpGi	CpG: 165	0.86441647597254	EH38E2031716,EH38E2031718	CpGpromo	(CGG)n,(CCGC)n,G-rich	Simple_repeat,Low_complexity	Simple_repeat,Low_complexity	1;0.780487804878049
rs11465228	chr5.157575011.157576352	HD,CAD	NR	CpGi	CpG: 95	1	EH38E2424756	CpGpromo	MIR3,(AG)n,(T)n	SINE,Simple_repeat	MIR,Simple_repeat	0.191489361702128;1
rs114782882	chr12.75895398.75895669	HD,HF	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs115271190	chr3.46923464.46924026	eQTL,beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs11554495	chr12.52903311.52905516	HD	NR	CpGi	CpG: 41	1	NA	not_CpGpromo	MIRb,(CCACC)n,(A)n	SINE,Simple_repeat	MIR,Simple_repeat	0.311827956989247;1
rs11591147	chr1.55039222.55040233	HD,CAD,MI	NR	CpGi	CpG: 85	0.88586387434555	EH38E1349458,EH38E1349459	CpGpromo	(GCT)n,MIR3	Simple_repeat,SINE	Simple_repeat,MIR	1
rs11606719	chr11.118911506.118912630	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb	SINE	MIR	1
rs11631816	chr15.73353612.73354309	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs11642015	chr16.53768577.53768944	HD,HF	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	UCON8	DNA	DNA	1
rs11643207	chr16.75463626.75465107	HD	NR	CpGi	CpG: 113	1	EH38E1828262,EH38E1828263,EH38E1828264	CpGpromo	NA	NA	NA	NA
rs11649479	chr16.19595069.19595894	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2a,AluSq4	LINE,SINE	L2,Alu	0.411229135053111;0.160621761658031
rs11670056	chr19.18478653.18479216	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MER20	DNA	hAT-Charlie	0.552941176470588
rs11677932	chr2.237315068.237315792	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs116843064	chr19.8363631.8364760	HD,CAD,MI	NR	CpGi	CpG: 52	1	NA	not_CpGpromo	AluSz,(CCCCGAAT)n	SINE,Simple_repeat	Alu,Simple_repeat	0.869747899159664;1
rs117038461	chr7.100243501.100243833	HD,CAD	EAR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc,L1M5	SINE,LINE	MIR,L1	0.521276595744681;1
rs11705555	chr22.27810496.27811281	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(TGCACA)n	Simple_repeat	Simple_repeat	0.95
rs117106946	chr7.129395086.129395773	eQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1MCc	LINE	L1	0.96958174904943;0.187667560321716
rs11713141	chr3.138347976.138349043	HD,CAD	NR	CpGi	CpG: 132	0.979225684608121	EH38E2241845,EH38E2241846	CpGpromo	NA	NA	NA	NA
rs117299725	chr9.76808694.76808955	ACtox,ACresp,HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs11759102	chr6.19836789.19839260	HD,CAD	NR	CpGi	CpG: 247	0.997826086956522	EH38E2452004	CpGpromo	AmnSINE2	SINE	tRNA-Deu	1
rs11768850	chr7.836506.836873	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MLT2B4	LTR	ERVL	0.651612903225806
rs11773545	chr7.7157060.7157578	eQTL	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	L1M8	LINE	L1	1
rs11838267	chr12.7068459.7069322	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb	SINE	MIR	1
rs11838776	chr13.110387344.110389032	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs11841562	chr13.21536977.21537596	ARR,HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	L2,AluSq2	LINE,SINE	L2,Alu	0.176470588235294;1;0.440251572327044
rs12122060	chr1.170224576.170224916	ARR,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MER53,MIRb,L1MA7	DNA,SINE,LINE	hAT,MIR,L1	0.0173913043478261;1;0.288571428571429
rs12150051	chr17.12584681.12585327	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	L1M7	LINE	L1	0.331269349845201
rs12155623	chr8.48898785.48899940	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(CA)n	Simple_repeat	Simple_repeat	0.787037037037037
rs1225600	chr6.28269507.28270003	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MLT2B4,AluSc8	LTR,SINE	ERVL,Alu	0.82565130260521;0.259259259259259
rs12263146	chr10.44964153.44964691	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	Charlie15a	DNA	hAT-Charlie	1
rs12440045	chr15.41490412.41490650	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs1250258	chr2.215435176.215436848	HD,MI	NR	CpGi	CpG: 43	1	EH38E2072836	CpGpromo	(CCCG)n,G-rich	Simple_repeat,Low_complexity	Simple_repeat,Low_complexity	1
rs1250259	chr2.215435176.215436848	HD,CAD	NR	CpGi	CpG: 43	1	EH38E2072836	CpGpromo	(CCCG)n,G-rich	Simple_repeat,Low_complexity	Simple_repeat,Low_complexity	1
rs1250566	chr10.79286266.79286796	HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs1256444	chr15.82870975.82871776	beQTL	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	L3b	LINE	CR1	1
rs12603284	chr17.2867997.2868307	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MamRTE1	LINE	RTE-BovB	1
rs12640611	chr4.10102598.10102907	ARR,HD	ESR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MSTD,MIRb	LTR,SINE	ERVL-MaLR,MIR	0.197707736389685;1
rs12712649	chr2.39631404.39632344	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MER5A,MLT1O	DNA,LTR	hAT-Charlie,ERVL-MaLR	1;0.738095238095238
rs12724121	chr1.236688731.236689166	HD,HF	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs12740374	chr1.109274953.109276202	HD,CAD,MI	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	(TCCTC)n	Simple_repeat	Simple_repeat	1
rs12893887	chr14.99644968.99645471	HD,CAD	NR	CpGi	CpG: 93	0.641221374045801	EH38E1741629,EH38E1741630	CpGpromo	NA	NA	NA	NA
rs12906125	chr15.90884159.90884726	HD,MI	not_mrc	CpGi	CpG: 45	1	EH38E1787901	CpGpromo	G-rich	Low_complexity	Low_complexity	1
rs12936927	chr17.17823556.17824258	HD,CAD	ESR_close	CpGi	CpG: 47	0.967213114754098	NA	not_CpGpromo	(CGCCC)n,MIRb	Simple_repeat,SINE	Simple_repeat,MIR	1
rs12980942	chr19.41324959.41326640	HD,CAD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	(CTCC)n,(CCCTG)n	Simple_repeat	Simple_repeat	1
rs12983897	chr19.17747415.17747946	HD,MI	LR_close	CpGi	CpG: 64	0.738461538461539	EH38E1943617	CpGpromo	MIRb	SINE	MIR	0.0130718954248366
rs13176353	chr5.1800893.1802029	HD	NR	CpGi	CpG: 185	0.367839607201309	EH38E2353141	CpGpromo	NA	NA	NA	NA
rs13177180	chr5.115543502.115545233	HD	NR	CpGi	CpG: 65	1	EH38E2400588	CpGpromo	G-rich,THE1B	Low_complexity,LTR	Low_complexity,ERVL-MaLR	1;0.304093567251462
rs1333042	chr9.22102751.22103879	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3,(TG)n	SINE,Simple_repeat	MIR,Simple_repeat	1
rs13346603	chr19.41439501.41440141	HD,HF	NR	CpGi	CpG: 18	1	NA	not_CpGpromo	AluJr	SINE	Alu	0.148936170212766
rs13402621	chr2.43231283.43231596	HD,MI	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs137116	chr22.42613933.42615951	beQTL	LR_close	CpGi	CpG: 76	1	EH38E2167312	CpGpromo	MIRc	SINE	MIR	1
rs139048037	chr7.4882176.4883983	eQTL	LR_close	CpGi	CpG: 103	1	EH38E2531208	CpGpromo	NA	NA	NA	NA
rs141654122	chr5.138068694.138070268	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3,U6,MamTip2,AluSp,SVA_D	SINE,snRNA,DNA,Retroposon	MIR,snRNA,hAT-Tip100,Alu,SVA	1;0.177004538577912
rs145306069	chr1.203795403.203796608	HD,CAD	NR	CpGi	CpG: 57	1	EH38E1413938	CpGpromo	NA	NA	NA	NA
rs1468498	chr10.114306394.114306913	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs147288039	chr9.95006342.95007055	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSc8	SINE	Alu	0.516778523489933
rs147631684	chr16.83599141.83599350	ACtox,ACresp,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1K	LTR	ERVL-MaLR	0.0246045694200351
rs148241618	chr18.45879810.45880598	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs148416395	chr22.46417011.46418228	HD,HF	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc,MIRb,AluSx1	SINE	MIR,Alu	1;0.0946372239747634
rs1522387	chr3.57959935.57960395	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1K	LTR	ERVL-MaLR	0.677083333333333
rs1522388	chr3.57959935.57960395	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1K	LTR	ERVL-MaLR	0.677083333333333
rs1537372	chr9.22102751.22103879	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3,(TG)n	SINE,Simple_repeat	MIR,Simple_repeat	1
rs1537373	chr9.22102751.22103879	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3,(TG)n	SINE,Simple_repeat	MIR,Simple_repeat	1
rs1579765	chr18.3261455.3263187	eQTL	EAR_open	CpGi	CpG: 116	1	EH38E1895792,EH38E1895794,EH38E1895795	CpGpromo	MER53	DNA	hAT	1
rs164632	chr19.4139628.4140643	eQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2a,AluSx1	LINE,SINE	L2,Alu	0.826224328593997;1
rs16866933	chr2.179701478.179702086	ARR,HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MIR	SINE	MIR	0.367741935483871
rs16938235	chr8.72542614.72542913	eQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2c	LINE	L2	0.634408602150538;0.488235294117647
rs170041	chr17.2266828.2267276	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluJb	SINE	Alu	0.222996515679443
rs17035016	chr4.156642161.156642803	eQTL	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MER5A	DNA	hAT-Charlie	0.583941605839416
rs17101521	chr10.121155583.121156319	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L3,LTR16A2	LINE,LTR	CR1,ERVL	0.363247863247863;1
rs17118812	chr5.140322792.140323772	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs17228212	chr15.67165920.67166678	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	L2b	LINE	L2	1
rs17375901	chr1.11792123.11792871	ARR,HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	L2c,MIRc	LINE,SINE	L2,MIR	0.3625;0.56
rs17451412	chr9.38383218.38384175	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSz,MIRb	SINE	Alu,MIR	1
rs17458018	chr2.215420519.215420812	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs175040	chr14.75002369.75003794	HD,CAD	NR	CpGi	CpG: 53	1	EH38E1728281	CpGpromo	NA	NA	NA	NA
rs17608766	chr17.46935408.46936158	HD,CAD	EAR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs1769758	chr10.79139073.79139940	ARR,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs17742402	chr2.28654693.28655341	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2c,MER5A	LINE,DNA	L2,hAT-Charlie	0.666666666666667;1
rs17782904	chr18.44733224.44733992	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs1788826	chr18.23574050.23574545	HD,HF	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs1800449	chr5.122076732.122078641	HD,CAD	LR_open	CpGi	CpG: 137	1	NA	not_CpGpromo	NA	NA	NA	NA
rs1800470	chr19.41352378.41354231	HD,CAD	NR	CpGi	CpG: 139	1	EH38E1954757,EH38E1954758	CpGpromo	(CAGCAG)n,(TCC)n	Simple_repeat	Simple_repeat	1
rs1800797	chr7.22726398.22726697	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs1800978	chr9.104903653.104904005	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs1822273	chr11.19988504.19989024	ARR,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	AmnSINE1	SINE	5S-Deu-L2	1
rs190258023	chr22.46417011.46418228	HD,HF	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc,MIRb,AluSx1	SINE	MIR,Alu	1;0.0946372239747634
rs191615952	chr19.2235309.2237165	HD,CAD	NR	CpGi	CpG: 157	1	EH38E1932153,EH38E1932154	CpGpromo	MLT1C,AluJr	LTR,SINE	ERVL-MaLR,Alu	0.0374149659863946;0.102040816326531
rs192407614	chr7.36459124.36459918	HD,CAD	EAR_open	not_CpGi	NA	NA	NA	not_CpGpromo	LTR38B	LTR	ERV1	1
rs1926032	chr10.103069381.103070029	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1ME3A	LINE	L1	0.2
rs1962412	chr17.48892152.48893499	HD,CAD	NR	CpGi	CpG: 35	1	EH38E1868507	CpGpromo	AluSx	SINE	Alu	0.0487012987012987
rs202311	chr17.10729456.10730377	beQTL	NR	CpGi	CpG: 76	1	EH38E1846822,EH38E1846823	CpGpromo	A-rich,AluSx1	Low_complexity,SINE	Low_complexity,Alu	1;0.149006622516556
rs2052923	chr2.43184483.43184778	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb,Cheshire	SINE,DNA	MIR,hAT-Charlie	1;0.100917431192661
rs2068063	chr4.76495482.76496240	HD,MI	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	LTR16A1,L2	LTR,LINE	ERVL,L2	0.337264150943396;0.889583333333333
rs2071502	chr17.7510984.7512510	ARR,HD	ESR_open	not_CpGi	NA	NA	NA	not_CpGpromo	AluSx	SINE	Alu	0.902654867256637
rs2073533	chr7.13989380.13991798	HD,CAD	NR	CpGi	CpG: 18,CpG: 21	1	EH38E2535294	CpGpromo	(AACA)n	Simple_repeat	Simple_repeat	1
rs2074038	chr11.44065881.44066814	beQTL	NR	CpGi	CpG: 63	1	EH38E1535528,EH38E1535529	CpGpromo	NA	NA	NA	NA
rs2076380	chr20.38164364.38165984	HD	NR	CpGi	CpG: 35	1	EH38E2111384	CpGpromo	MIRc,(AC)n	SINE,Simple_repeat	MIR,Simple_repeat	1
rs2083636	chr8.20007264.20008372	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	LTR32,MER34A,LTR48	LTR	ERVL,ERV1	0.875294117647059;1
rs2099684	chr1.161530078.161531531	HD	NR	CpGi	CpG: 32	1	NA	not_CpGpromo	tRNA-Leu-CTG,tRNA-Gly-GGA,(TTCC)n,Charlie5	tRNA,Simple_repeat,DNA	tRNA,Simple_repeat,hAT-Charlie	1;0.204301075268817
rs2145274	chr20.6590860.6591642	ARR,HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	Penelope1_Vert	LINE	Penelope	1
rs2145598	chr14.58326948.58327320	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2c,MER3	LINE,DNA	L2,hAT-Charlie	0.219123505976096;1
rs216172	chr17.2222861.2223544	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs2220127	chr2.178846382.178846751	HD,HF	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc	SINE	MIR	0.38655462184874
rs2220427	chr4.110793293.110793943	ARR,HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs2236288	chr9.35748344.35750255	beQTL	NR	CpGi	CpG: 63	1	EH38E2692030	CpGpromo	(CCG)n,(GCCAGT)n	Simple_repeat	Simple_repeat	1;0.0483870967741935
rs2239923	chr17.45099081.45099608	eQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs2240366	chr22.29799249.29799602	eQTL	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs2249828	chr21.37060244.37060773	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(GCA)n	Simple_repeat	Simple_repeat	1
rs2267386	chr22.38435884.38436418	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIR	SINE	MIR	1
rs2269001	chr7.150954727.150956459	ARR,HD	ESR_close	CpGi	CpG: 23	1	EH38E2600998	CpGpromo	NA	NA	NA	NA
rs2281727	chr17.2214040.2216112	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(AC)n,GA-rich	Simple_repeat,Low_complexity	Simple_repeat,Low_complexity	1
rs2285604	chr19.57363003.57364130	beQTL	NR	CpGi	CpG: 31	1	EH38E1965826	CpGpromo	(TGCG)n,L2	Simple_repeat,LINE	Simple_repeat,L2	1;0.143646408839779
rs2286466	chr16.1963596.1965464	ARR,HD	NR	CpGi	CpG: 122	1	EH38E1796197,EH38E1796198,EH38E1796199	CpGpromo	AluSx3,(CCCCGG)n,(CTGACCC)n	SINE,Simple_repeat	Alu,Simple_repeat	0.0114068441064639;1
rs2291437	chr12.24561685.24562685	ARR,HD	NR	CpGi	CpG: 92	0.495515695067265	EH38E1599170,EH38E1599171	CpGpromo	G-rich,(CCACCTC)n,(TG)n,(TCGC)n	Low_complexity,Simple_repeat	Low_complexity,Simple_repeat	1
rs2293011	chr19.49451570.49452060	beQTL	NR	CpGi	CpG: 31	0.850710900473934	EH38E1960877	CpGpromo	FLAM_C	SINE	Alu	0.406896551724138
rs2297415	chr1.226984909.226985501	beQTL	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs2306363	chr11.65637814.65638912	HD,CAD	NR	CpGi	CpG: 36	1	EH38E1545418	CpGpromo	MIRb	SINE	MIR	0.252873563218391
rs2306374	chr3.138400627.138401136	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs2359171	chr16.73018778.73020183	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(GCGTGT)n	Simple_repeat	Simple_repeat	1
rs2405231	chr20.23361515.23362990	beQTL	NR	CpGi	CpG: 142	0.995241871530531	EH38E2104219	CpGpromo	G-rich,(CGCCGCC)n	Low_complexity,Simple_repeat	Low_complexity,Simple_repeat	1
rs2410859	chr17.75844492.75845572	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	(GTGGG)n	Simple_repeat	Simple_repeat	1
rs2415081	chr15.70171390.70172398	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MER102c,MIRb,MIR3	DNA,SINE	hAT-Charlie,MIR	0.788793103448276;1
rs2421649	chr3.169478628.169479748	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2b,(A)n	LINE,Simple_repeat	L2,Simple_repeat	1
rs243071	chr2.60391661.60392192	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb	SINE	MIR	1
rs2452600	chr4.94575665.94576013	HD,CAD	EAR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs2493298	chr1.3408398.3409463	HD,CAD	LR_open	CpGi	CpG: 37	1	NA	not_CpGpromo	NA	NA	NA	NA
rs249496	chr5.102865289.102866656	beQTL	NR	CpGi	CpG: 47	1	NA	not_CpGpromo	NA	NA	NA	NA
rs2507	chr15.73983047.73983757	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(CCTTC)n	Simple_repeat	Simple_repeat	1
rs2525735	chr7.120985054.120985452	beQTL	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1J2	LTR	ERVL-MaLR	0.0327868852459016
rs2540949	chr2.65055695.65057220	ARR,HD	NR	CpGi	CpG: 132	1	EH38E2004398	CpGpromo	NA	NA	NA	NA
rs2595104	chr4.110631655.110632575	ARR,HD	NR	CpGi	CpG: 100	0.576480990274094	NA	not_CpGpromo	NA	NA	NA	NA
rs2625322	chr11.19988504.19989024	ARR,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	AmnSINE1	SINE	5S-Deu-L2	1
rs2627230	chr6.134058572.134059383	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSz,Arthur1B,AluJb	SINE,DNA	Alu,hAT-Tip100	0.273885350318471;1;0.963333333333333
rs2645743	chr14.52045026.52045827	beQTL	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MIR,(A)n	SINE,Simple_repeat	MIR,Simple_repeat	0.225563909774436;1
rs2660739	chr3.78644690.78645022	HD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs2664523	chr20.46688900.46689951	eQTL	NR	CpGi	CpG: 83	1	EH38E2116384,EH38E2116385	CpGpromo	MIR	SINE	MIR	0.191489361702128
rs2807835	chr1.220797581.220797983	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3	SINE	MIR	0.713235294117647
rs281868	chr6.118252411.118253042	ARR,HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	L2a,L2b	LINE	L2	0.492152466367713;0.26080476900149
rs2834618	chr21.34746498.34746999	ARR,HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	AluSx,MIRc,(CTCC)n	SINE,Simple_repeat	Alu,MIR,Simple_repeat	0.201320132013201;1;0.526315789473684
rs2852306	chr18.45565618.45565968	HD	EAR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3	SINE	MIR	0.614814814814815
rs28705932	chr8.17607963.17609232	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluJb,AluSx1	SINE	Alu	1;0.026615969581749
rs291400	chr1.235491451.235491958	eQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MER63C,L2	DNA,LINE	hAT-Blackjack,L2	0.0550561797752809;1
rs2925339	chr15.41798537.41799607	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSx1	SINE	Alu	0.160278745644599
rs295114	chr2.200330546.200331118	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs3108296	chr4.185202211.185202757	eQTL	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	AluJb	SINE	Alu	1
rs3176326	chr6.36678380.36679788	ARR,HD,HF	ESR_open	CpGi	CpG: 204	0.594777127420081	EH38E2463466	CpGpromo	NA	NA	NA	NA
rs3213420	chr16.72008437.72009100	HD,CAD	LR_close	CpGi	CpG: 50	1	EH38E1826130	CpGpromo	NA	NA	NA	NA
rs326	chr8.19961869.19963021	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs328	chr8.19961869.19963021	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs337711	chr5.114412835.114413212	ARR,HD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs34087264	chr16.70288531.70289732	eQTL,beQTL	NR	CpGi	CpG: 37	1	NA	not_CpGpromo	L2c,AluSx	LINE,SINE	L2,Alu	0.522388059701492;1
rs34292822	chr1.154839629.154839995	ARR,HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs34774090	chr19.11142349.11143639	HD,CAD	EAR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIR1_Amn,G-rich,MER20	SINE,Low_complexity,DNA	MIR,Low_complexity,hAT-Charlie	1
rs34866937	chr8.124847104.124848853	HD,HF	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MamTip2,AluSx	DNA,SINE	hAT-Tip100,Alu	1
rs34871776	chr3.12773796.12774087	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs34969716	chr6.18209665.18210014	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluJr,MER5B	SINE,DNA	Alu,hAT-Charlie	0.636904761904762;1
rs35006907	chr8.124847104.124848853	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MamTip2,AluSx	DNA,SINE	hAT-Tip100,Alu	1
rs35153311	chr14.104991532.104993113	beQTL	ESR_open	CpGi	CpG: 42	1	NA	not_CpGpromo	NA	NA	NA	NA
rs35176054	chr10.103720444.103721025	ARR,HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs35267671	chr1.37931148.37932171	HD,MI	NR	CpGi	CpG: 53	1	EH38E1338382	CpGpromo	MIR3	SINE	MIR	1
rs35620480	chr8.11641900.11643102	ARR,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1K,MIRb,(C)n	LTR,SINE,Simple_repeat	ERVL-MaLR,MIR,Simple_repeat	0.588832487309645;1
rs35946663	chr14.96362201.96364292	HD	NR	CpGi	CpG: 101	1	EH38E1739803,EH38E1739804	CpGpromo	(CGGCTC)n,MIR	Simple_repeat,SINE	Simple_repeat,MIR	1;0.248780487804878
rs360153	chr11.9740217.9740734	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs360801	chr2.62727824.62728333	HD,MI	NR	not_CpGi	NA	NA	NA	not_CpGpromo	LTR35,L1MB8	LTR,LINE	ERV1,L1	0.886917960088692;0.107569721115538
rs3731748	chr2.178547784.178549172	ARR,HD	ESR_opcl	not_CpGi	NA	NA	NA	not_CpGpromo	OldhAT1	DNA	hAT-Ac	1
rs3734634	chr6.125789773.125791822	HD	NR	CpGi	CpG: 107	1	EH38E2500543,EH38E2500544	CpGpromo	(CCT)n,(CGC)n	Simple_repeat	Simple_repeat	1
rs3735166	chr7.150368071.150370160	beQTL	NR	CpGi	CpG: 118	1	EH38E2600513,EH38E2600514,EH38E2600515	CpGpromo	(GCGGCC)n,(CGCCC)n,(GGCCGG)n,(TGGTGGC)n	Simple_repeat	Simple_repeat	1
rs3763851	chr11.62804504.62805983	eQTL	NR	CpGi	CpG: 68	1	EH38E1542914	CpGpromo	MIRb,L2a	SINE,LINE	MIR,L2	1;0.132075471698113
rs376825901	chr7.93713592.93714106	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	Tigger1	DNA	TcMar-Tigger	0.213959285417532
rs3774670	chr3.45631534.45631817	eQTL	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs3787662	chr21.29151834.29152614	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2b	LINE	L2	1
rs3794139	chr11.130897159.130897885	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(AC)n	Simple_repeat	Simple_repeat	1
rs3803802	chr17.7718045.7718289	ARR,HD,HF,CAD	EAR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs3807989	chr7.116545872.116546373	ARR,HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs3809297	chr12.111171885.111172119	ARR,HD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs3813127	chr18.22457586.22457998	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb	SINE	MIR	0.418439716312057
rs3813684	chr6.24720088.24721838	eQTL	NR	CpGi	CpG: 94	1	EH38E2454664,EH38E2454665	CpGpromo	(GGC)n,A-rich	Simple_repeat,Low_complexity	Simple_repeat,Low_complexity	1
rs3814864	chr14.72893758.72895206	ARR,HD	NR	CpGi	CpG: 165	0.218648018648019	EH38E1726798,EH38E1726799	CpGpromo	GA-rich	Low_complexity	Low_complexity	1
rs3822127	chr4.173529475.173530537	ARR,HD	EAR_open	CpGi	CpG: 120	0.593113141250878	EH38E2344608,EH38E2344610	CpGpromo	(CCGGCT)n,(CCCTC)n	Simple_repeat	Simple_repeat	1
rs3822259	chr4.10115366.10117581	ARR,HD	NR	CpGi	CpG: 136	1	EH38E2280769,EH38E2280771,EH38E2280772	CpGpromo	MIRc,5S,(GGCAG)n,G-rich,(CCGGCC)n	SINE,rRNA,Simple_repeat,Low_complexity	MIR,rRNA,Simple_repeat,Low_complexity	1
rs3830160	chr16.368914.369299	eQTL,beQTL	ESR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs3853445	chr4.110840197.110840561	ARR,HD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs3885907	chr13.30740138.30740672	ACresp	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	L3,MIR,(TC)n,L2	LINE,SINE,Simple_repeat	CR1,MIR,Simple_repeat,L2	0.385869565217391;1;0.27319587628866
rs3895874	chr17.48970223.48970597	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs3904323	chr13.22794559.22794879	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	OldhAT1	DNA	hAT-Ac	1
rs42044	chr7.92620778.92621787	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluJb,MamRTE1	SINE,LINE	Alu,RTE-BovB	0.506802721088435;0.298449612403101
rs4234323	chr3.151479569.151479846	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs4234324	chr3.151479569.151479846	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs4387942	chr3.151483988.151484643	HD,CAD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	L1PA7	LINE	L1	0.101516558341071
rs472109	chr11.9748359.9748943	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	LTR41,MIRb	LTR,SINE	ERVL,MIR	0.61864406779661;1;0.703703703703704
rs472495	chr1.55055575.55055793	HD,CAD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs4757877	chr11.19988504.19989024	ARR,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	AmnSINE1	SINE	5S-Deu-L2	1
rs476348	chr18.35089781.35090661	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1MB7,L1MA6,AluSx1	LINE,SINE	L1,Alu	0.478102189781022;1;0.67948717948718
rs4773140	chr13.110301444.110302036	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2	LINE	L2	0.210682492581602
rs4773141	chr13.110301444.110302036	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2	LINE	L2	0.210682492581602
rs4773144	chr13.110305804.110309074	HD,CAD	NR	CpGi	CpG: 178,CpG: 19	1	EH38E1697729,EH38E1697730	CpGpromo	(AAGAAC)n,(GGC)n	Simple_repeat	Simple_repeat	1
rs4845618	chr1.154427117.154427941	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSq	SINE	Alu	0.303886925795053
rs4871397	chr8.123622558.123623378	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs4894803	chr3.172082306.172082889	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3	SINE	MIR	1
rs4896104	chr6.134797479.134798124	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs4924841	chr17.18200579.18201302	beQTL	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	L2c	LINE	L2	1
rs4932373	chr15.90885954.90886257	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIR,MER58A	SINE,DNA	MIR,hAT-Charlie	1;0.0588235294117647
rs494207	chr10.44245450.44245918	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1MB2	LINE	L1	0.566343042071197
rs4951261	chr1.205748526.205750556	ARR,HD	NR	CpGi	CpG: 100	1	NA	not_CpGpromo	NA	NA	NA	NA
rs4955430	chr3.49339480.49341040	beQTL	NR	CpGi	CpG: 42	1	EH38E2200216	CpGpromo	MIRc,(CGCGCCG)n,L2c	SINE,Simple_repeat,LINE	MIR,Simple_repeat,L2	0.898203592814371;1;0.83495145631068
rs4977575	chr9.22124697.22124840	HD,CAD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs4999127	chr1.154741375.154741854	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs518594	chr10.44261009.44262169	HD,CAD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs523297	chr10.44261009.44262169	HD,CAD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs534128177	chr11.90455310.90455981	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1PA16,LTR14B	LINE,LTR	L1,ERVK	0.0403825717321998;1;0.10625
rs55734480	chr7.14331921.14332483	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(GTTT)n,MIR,MER113	Simple_repeat,SINE,DNA	Simple_repeat,MIR,hAT-Charlie	1;0.00966183574879227
rs56210063	chr11.8767540.8768078	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2a,L3	LINE	L2,CR1	0.422077922077922;1
rs56281979	chr3.14232390.14233136	HD,HF	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3,L3,AluSz6	SINE,LINE	MIR,CR1,Alu	0.72;1;0.130281690140845
rs56336142	chr6.39166177.39166915	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc	SINE	MIR	1
rs564427867	chr1.55039222.55040233	HD,CAD	NR	CpGi	CpG: 85	0.88586387434555	EH38E1349458,EH38E1349459	CpGpromo	(GCT)n,MIR3	Simple_repeat,SINE	Simple_repeat,MIR	1
rs57346421	chr21.14118943.14119390	HD,HF	NR	not_CpGi	NA	NA	NA	not_CpGpromo	HERV1_I-int	LTR	ERV1	0.0510483135824977
rs582384	chr2.45668749.45669787	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc,L1M5,AluSx1	SINE,LINE	MIR,L1,Alu	0.260869565217391;1;0.196013289036545
rs585967	chr2.21047256.21047719	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(CA)n	Simple_repeat	Simple_repeat	1
rs5867305	chr5.36156365.36157193	HD,CAD	EAR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MER5A,MER112	DNA	hAT-Charlie	1
rs58754895	chr19.57849371.57850853	eQTL	NR	CpGi	CpG: 34	1	EH38E1966060	CpGpromo	L2c,LTR8,LTR14C	LINE,LTR	L2,ERV1,ERVK	1;0.458844133099825
rs587606498	chr1.121213617.121213779	HD,HF	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs588136	chr15.58437614.58438322	HD,CAD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs590121	chr11.75561990.75564409	HD,CAD	NR	CpGi	CpG: 53	0.873873873873874	EH38E1553275	CpGpromo	G-rich	Low_complexity	Low_complexity	1
rs59132842	chr19.33868824.33869376	beQTL	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs60280851	chr15.68666479.68666914	HD	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	5S	rRNA	rRNA	1
rs604723	chr11.100739719.100740030	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs6090159	chr20.62899782.62900957	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs6132819	chr20.25237572.25238291	eQTL,beQTL	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	L1ME3	LINE	L1	1
rs62042066	chr16.86664502.86665119	HD,MI	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	AmnSINE1,LTR16A2	SINE,LTR	5S-Deu-L2,ERVL	1
rs62139062	chr2.65271531.65272160	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSp	SINE	Alu	0.385665529010239
rs62232870	chr3.14216199.14216968	HD,DCM	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1K,MER117,MIRb	LTR,DNA,SINE	ERVL-MaLR,hAT-Charlie,MIR	0.767313019390582;1;0.248587570621469
rs62471956	chr7.99822872.99823551	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MER52A	LTR	ERV1	0.416922133660331
rs62568141	chr9.77011996.77012519	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs629301	chr1.109274953.109276202	ARR,HD,HF,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	(TCCTC)n	Simple_repeat	Simple_repeat	1
rs6426551	chr1.226353539.226354600	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	LTR78,Charlie4z,MLT1L	LTR,DNA	ERV1,hAT-Charlie,ERVL-MaLR	0.652284263959391;1;0.0392156862745098
rs646776	chr1.109274953.109276202	HD,CAD,MI	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	(TCCTC)n	Simple_repeat	Simple_repeat	1
rs653178	chr12.111569574.111570394	HD,MI	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluJb,(CAC)n,MER3,L3,L1MC5	SINE,Simple_repeat,DNA,LINE	Alu,Simple_repeat,hAT-Charlie,CR1,L1	0.534798534798535;1;0.768707482993197
rs6542647	chr2.4898614.4899128	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1PB3,MER113B	LINE,DNA	L1,hAT-Charlie	0.0321543408360129;1
rs6546620	chr2.25936965.25937466	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb,(GGCAGT)n	SINE,Simple_repeat	MIR,Simple_repeat	0.691176470588235;0.0487804878048781
rs6597292	chr6.7974642.7975583	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs6598541	chr15.98727491.98728563	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	(T)n,LTR12F	Simple_repeat,LTR	Simple_repeat,ERV1	1
rs660240	chr1.109274953.109276202	HD,HF,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	(TCCTC)n	Simple_repeat	Simple_repeat	1
rs667920	chr3.136350085.136351911	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSz,L1M4b,L1MA9,L1M4a2	SINE,LINE	Alu,L1	0.25;1;0.300291545189504
rs6702619	chr1.99580395.99580980	HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs672149	chr11.128759383.128760154	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2	LINE	L2	0.927433628318584
rs6730157	chr2.135149084.135149706	ARR,HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIR,AluY	SINE	MIR,Alu	1;0.152542372881356
rs6759518	chr2.27262237.27263756	ARR,HD,HF,CAD	NR	CpGi	CpG: 257	0.479192938209332	EH38E1982668	CpGpromo	MIRc	SINE	MIR	0.84297520661157
rs6801957	chr3.38725644.38726351	ARR,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb	SINE	MIR	0.15668202764977
rs6807275	chr3.14232390.14233136	HD,DCM	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3,L3,AluSz6	SINE,LINE	MIR,CR1,Alu	0.72;1;0.130281690140845
rs6808036	chr3.49198826.49199359	eQTL	LR_open	CpGi	CpG: 55	0.211764705882353	EH38E2200132	CpGpromo	(GGCGTG)n	Simple_repeat	Simple_repeat	1
rs6909752	chr6.22612314.22612576	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs6982502	chr8.125466567.125467336	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs7090277	chr10.12234804.12236216	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSp,MER117	SINE,DNA	Alu,hAT-Charlie	0.678787878787879;1
rs7115242	chr11.117037235.117037719	ARR,HD,HF,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs7157599	chr14.100158874.100160055	ARR,HD	NR	CpGi	CpG: 131	0.939579684763573	EH38E1742143	CpGpromo	G-rich	Low_complexity	Low_complexity	1
rs7165042	chr15.78830933.78832028	HD,CAD,MI	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs7165081	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs7165733	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs7166764	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs7172038	chr15.73374622.73375198	ARR,HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs7178084	chr15.73375634.73376745	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2c,(CAAGCCC)n	LINE,Simple_repeat	L2,Simple_repeat	1
rs7181432	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs7182103	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs7182529	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs7182716	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs7183206	chr15.73375634.73376745	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2c,(CAAGCCC)n	LINE,Simple_repeat	L2,Simple_repeat	1
rs7189462	chr16.81873989.81874357	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MER102a	DNA	hAT-Charlie	1
rs7197197	chr16.72877300.72877905	ARR,HD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	(TGT)n	Simple_repeat	Simple_repeat	1
rs7234864	chr18.60067561.60068151	HD,HF	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	L2c	LINE	L2	0.0103092783505155
rs7246865	chr19.17107804.17108454	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1C,MER20	LTR,DNA	ERVL-MaLR,hAT-Charlie	0.321867321867322;0.541666666666667
rs72654473	chr19.44911105.44911471	HD,CAD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc	SINE	MIR	0.393939393939394
rs72658867	chr19.11119936.11120563	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSq,(AAAC)n	SINE,Simple_repeat	Alu,Simple_repeat	0.135231316725979;1
rs72664335	chr1.56521199.56521723	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	AluSz6,(TG)n,FLAM_C,(CTCC)n	SINE,Simple_repeat	Alu,Simple_repeat	0.205787781350482;1;0.219178082191781
rs72671655	chr8.105335411.105336052	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs72700114	chr1.170224576.170224916	ARR,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MER53,MIRb,L1MA7	DNA,SINE,LINE	hAT,MIR,L1	0.0173913043478261;1;0.288571428571429
rs72926475	chr2.86367009.86367615	ARR,HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIR	SINE	MIR	0.407608695652174;1
rs72935945	chr6.110334421.110335161	HD,CAD	ESR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs729743	chr17.80795708.80796334	HD,CAD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	THE1D,MLT2A2	LTR	ERVL-MaLR,ERVL	1
rs73045269	chr19.41318885.41319481	HD,CAD	ESR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs73102285	chr5.52859657.52860199	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L3	LINE	CR1	0.763713080168776
rs73123536	chr4.22630084.22630437	HD,HF	not_mrc	not_CpGi	NA	NA	NA	not_CpGpromo	MIRc	SINE	MIR	0.32258064516129
rs73193808	chr21.29162621.29163485	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluSq2,AluSz6	SINE	Alu	0.263333333333333;1
rs7333991	chr13.110455785.110456535	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs733701	chr6.39203639.39204133	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MER5B	DNA	hAT-Charlie	1
rs73581403	chr14.21455422.21456733	eQTL	NR	CpGi	CpG: 22	1	EH38E1701669	CpGpromo	(CGGCC)n	Simple_repeat	Simple_repeat	1
rs73869764	chr3.149339958.149340818	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2c	LINE	L2	0.00350877192982456
rs7403708	chr15.78830933.78832028	HD,CAD	LR_open	CpGi	CpG: 122	0.692356285533797	NA	not_CpGpromo	NA	NA	NA	NA
rs74181299	chr2.65055695.65057220	ARR,HD	NR	CpGi	CpG: 132	1	EH38E2004398	CpGpromo	NA	NA	NA	NA
rs7424376	chr2.69298223.69299291	eQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1F2	LTR	ERVL-MaLR	0.982591876208897
rs7433206	chr3.38615932.38616880	HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs7440763	chr4.155512047.155512545	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	Charlie4z	DNA	hAT-Charlie	0.42483660130719
rs7486169	chr12.74338024.74338393	HD,DCM	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs75112503	chr11.110366109.110367343	HD,MI	NR	not_CpGi	NA	NA	NA	not_CpGpromo	AluY,L1MB3,L2b,AluSx	SINE,LINE	Alu,L1,L2	0.277227722772277;1;0.598425196850394
rs75190942	chr11.128894447.128895096	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs7529220	chr1.21955557.21956277	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb	SINE	MIR	1
rs7549876	chr1.43294278.43294913	beQTL	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	AluJr	SINE	Alu	0.885542168674699
rs75524776	chr12.109538192.109538640	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb	SINE	MIR	1
rs7568458	chr2.85560977.85561973	HD,CAD	NR	CpGi	CpG: 37	1	EH38E2013886	CpGpromo	AluJr	SINE	Alu	0.0138888888888889
rs7580831	chr2.237310830.237311051	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs759098931	chr14.99644968.99645471	HD,CAD	NR	CpGi	CpG: 93	0.641221374045801	EH38E1741629,EH38E1741630	CpGpromo	NA	NA	NA	NA
rs7604403	chr2.111897773.111899676	HD,CAD	NR	CpGi	CpG: 137	1	EH38E2024982	CpGpromo	AluSc	SINE	Alu	0.533783783783784
rs76064792	chr16.719886.721785	HD,HF	LR_close	CpGi	CpG: 169	0.757477243172952	EH38E1795024,EH38E1795025	CpGpromo	(GCAGG)n	Simple_repeat	Simple_repeat	1
rs76097649	chr11.128894447.128895096	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs7612445	chr3.179454943.179455262	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs7617480	chr3.49173142.49174143	HD,HF	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	(CCATCT)n	Simple_repeat	Simple_repeat	1
rs7617773	chr3.48151277.48152429	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MamTip1	DNA	hAT-Tip100	1
rs7632505	chr3.123019226.123019547	ARR,HD,HF,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIR,AluJb	SINE	MIR,Alu	0.771929824561403;0.829787234042553
rs7633770	chr3.46646587.46647198	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MER74A	LTR	ERVL	0.641025641025641
rs7650998	chr3.46565604.46566851	beQTL	NR	CpGi	CpG: 42	1	NA	not_CpGpromo	NA	NA	NA	NA
rs76600480	chr7.128909544.128910271	HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2	LINE	L2	0.1875
rs7690530	chr4.40629425.40630609	HD,CAD	NR	CpGi	CpG: 66	1	EH38E2292822	CpGpromo	G-rich	Low_complexity	Low_complexity	1
rs7696431	chr4.168766280.168767270	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MER41A,L3,MIRc	LTR,LINE,SINE	ERV1,CR1,MIR	0.842105263157895;1;0.883018867924528
rs77265383	chr14.23379917.23380414	eQTL	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MIR3	SINE	MIR	1
rs77316573	chr16.2214289.2215681	ARR,HD	LR_close	CpGi	CpG: 162	0.75131926121372	NA	not_CpGpromo	(CCG)n,L1ME3,AluY	Simple_repeat,LINE,SINE	Simple_repeat,L1,Alu	1;0.205787781350482
rs7873551	chr9.116482574.116483181	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs7910227	chr10.20953148.20953475	ARR,HD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MLT1B	LTR	ERVL-MaLR	0.824120603015075
rs7947761	chr11.100753128.100753902	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L1PBa	LINE	L1	0.395206527281999
rs79661299	chr6.42087754.42088697	HD,HF	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MIRb,AluSc	SINE	MIR,Alu	0.706666666666667;1
rs79717953	chr6.73694726.73695115	HD,CAD,MI	EAR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MER5A1	DNA	hAT-Charlie	0.264367816091954
rs7976688	chr12.21570414.21570741	beQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2c,L2	LINE	L2	1;0.412017167381974
rs7977247	chr12.106865628.106866040	HD,HF	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	L2a	LINE	L2	0.568870523415978
rs79825511	chr11.69700398.69700987	HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	MER113B,(CCAGG)n	DNA,Simple_repeat	hAT-Charlie,Simple_repeat	0.713235294117647;1
rs798726	chr4.1683470.1685120	beQTL	LR_close	CpGi	CpG: 135	1	EH38E2274953,EH38E2274954,EH38E2274955	CpGpromo	HY1,(CCG)n,MIRc	scRNA,Simple_repeat,SINE	scRNA,Simple_repeat,MIR	0.517241379310345;1
rs8003602	chr14.99682572.99684938	HD,CAD	NR	CpGi	CpG: 127	1	EH38E1741669,EH38E1741670	CpGpromo	MER50,MamGypLTR3,MamGypLTR2b,(CCCGG)n,G-rich,MIR	LTR,Simple_repeat,Low_complexity,SINE	ERV1,Gypsy,Simple_repeat,Low_complexity,MIR	0.0142857142857143;1
rs8056746	chr16.4624324.4626024	eQTL	NR	CpGi	CpG: 70	1	EH38E1798564,EH38E1798565	CpGpromo	(GGCGG)n,MIR1_Amn,MIR3	Simple_repeat,SINE	Simple_repeat,MIR	1
rs8096658	chr18.79396485.79396813	ARR,HD	NR	CpGi	CpG: 544	0.0474336793540946	NA	not_CpGpromo	NA	NA	NA	NA
rs861373	chr5.80651629.80652340	eQTL	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs869396	chr4.168766280.168767270	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	MER41A,L3,MIRc	LTR,LINE,SINE	ERV1,CR1,MIR	0.842105263157895;1;0.883018867924528
rs880315	chr1.10736684.10737808	ARR,HD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	L2c	LINE	L2	0.931034482758621;1
rs894211	chr8.20007264.20008372	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	LTR32,MER34A,LTR48	LTR	ERVL,ERV1	0.875294117647059;1
rs899162	chr5.135458929.135459424	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2c	LINE	L2	1
rs899997	chr15.78726891.78727425	HD,CAD	ESR_close	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs9381392	chr6.45650526.45650971	eQTL	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA
rs9388813	chr6.130602114.130602839	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MamSINE1	SINE	tRNA-RTE	1
rs944172	chr9.107755276.107755816	HD,CAD	LR_open	not_CpGi	NA	NA	NA	not_CpGpromo	Charlie13a,MLT2C1	DNA,LTR	hAT-Charlie,ERVL	0.71658615136876;0.307420494699647
rs9469890	chr6.34796116.34796383	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	L2a	LINE	L2	0.528089887640449
rs9506925	chr13.22794559.22794879	ARR,HD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	OldhAT1	DNA	hAT-Ac	1
rs9556903	chr13.98207008.98208056	HD,CAD	LR_close	not_CpGi	NA	NA	NA	not_CpGpromo	(CA)n	Simple_repeat	Simple_repeat	1
rs965652	chr6.134047673.134047938	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	MamRep1894	DNA	hAT	1
rs9899183	chr17.7548665.7550717	ARR,HD	NR	CpGi	CpG: 50	1	EH38E1844469	CpGpromo	MER21A,G-rich,MIRc,MER94	LTR,Low_complexity,SINE,DNA	ERVL,Low_complexity,MIR,hAT-Blackjack	0.748815165876777;1
rs9906944	chr17.49012959.49014932	HD,CAD	NR	CpGi	CpG: 48,CpG: 18	1	EH38E1868609	CpGpromo	MIRc	SINE	MIR	1
rs9912587	chr17.43021036.43021565	HD,CAD	NR	not_CpGi	NA	NA	NA	not_CpGpromo	NA	NA	NA	NA

# final_SNP_df <- SNP_df %>% left_join(.,Collapsed_new_peaks, by = c("Peakid"="Peakid"))

SNP enrichment tests

 # making data frames

GWAS_HD_peak <- test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="HD") %>% 
  distinct(Peakid)

GWAS_ARR_peak <- test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="ARR") %>% 
  distinct(Peakid)

GWAS_ACresp_peak <-  test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="ACresp") %>%
  distinct(Peakid)

GWAS_ACtox_peak <-  test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="ACtox") %>%
  distinct(Peakid)

GWAS_CAD_peak <-  test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="CAD") %>%
  distinct(Peakid)

GWAS_HF_peak <-  test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="HF") %>%
  distinct(Peakid)

GWAS_MI_peak <-  test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="MI") %>%
  distinct(Peakid)

GWAS_DCM_peak <-  test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="DCM") %>%
  distinct(Peakid)

GWAS_eQTL_peak <-  test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="eQTL") %>%
  distinct(Peakid)

GWAS_beQTL_peak <-  test2 %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="beQTL") %>%
  distinct(Peakid)



SNP_status_list <- Eight_group_TE %>% 
  mutate(mrc=if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl",                 if_else(Peakid %in% ESR_D$Peakid,"ESR_clop",mrc))) %>% 
  distinct(Peakid,mrc) %>% 
  mutate(SNP_status =if_else(Peakid %in% GWAS_HD_peak$Peakid,"SNP_peak",
                             if_else(Peakid %in% GWAS_ACresp_peak$Peakid,"SNP_peak",
                                     if_else(Peakid %in% GWAS_ACtox_peak$Peakid,"SNP_peak",
                                             if_else(Peakid %in% GWAS_DCM_peak$Peakid,"SNP_peak",
                                             if_else(Peakid %in% GWAS_ARR_peak$Peakid,"SNP_peak",
                                                     if_else(Peakid %in% GWAS_MI_peak$Peakid,"SNP_peak",
                                                             if_else(Peakid %in% GWAS_CAD_peak$Peakid,"SNP_peak",
                                                                     if_else(Peakid %in% GWAS_HD_peak$Peakid,"SNP_peak",
                                                                             if_else(Peakid %in% GWAS_HF_peak$Peakid,"SNP_peak","not_SNP_peak")))))))))) %>% 
  mutate(HD_status =if_else(Peakid %in% GWAS_HD_peak$Peakid, "SNP_peak", "not_SNP_peak")) %>%
  mutate(ACresp_status= if_else(Peakid %in% GWAS_ACresp_peak$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(ACtox_status=if_else(Peakid %in% GWAS_ACtox_peak$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(ARR_status=if_else(Peakid %in% GWAS_ARR_peak$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(MI_status=if_else(Peakid %in% GWAS_MI_peak$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(CAD_status=if_else(Peakid %in% GWAS_CAD_peak$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(HD_status=if_else(Peakid %in% GWAS_HD_peak$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(HF_status=if_else(Peakid %in% GWAS_HF_peak$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(DCM_status=if_else(Peakid %in% GWAS_DCM_peak$Peakid,"SNP_peak","not_SNP_peak")) %>% 
   mutate(eQTL_status=if_else(Peakid %in% GWAS_eQTL_peak$Peakid,"eQTL_peak","not_eQTL_peak")) %>% 
  mutate(beQTL_status=if_else(Peakid %in% GWAS_beQTL_peak$Peakid,"eQTL_peak","not_eQTL_peak"))

SNP_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(SNP_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = SNP_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

ACresp_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(ACresp_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = ACresp_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

ACtox_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(ACtox_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = ACtox_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

ARR_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(ARR_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = ARR_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

CAD_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(CAD_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = CAD_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

HD_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(HD_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = HD_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

HF_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(HF_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = HF_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

MI_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(MI_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = MI_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

DCM_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(DCM_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = DCM_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

eQTL_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(eQTL_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = eQTL_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

base_eQTL_mat <- SNP_status_list %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(beQTL_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = beQTL_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

 # making data frames

GWAS_HD_peak_5k <- test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="HD") %>% 
  distinct(Peakid)

GWAS_ARR_peak_5k <- test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="ARR") %>% 
  distinct(Peakid)

GWAS_ACresp_peak_5k <-  test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="ACresp") %>%
  distinct(Peakid)

GWAS_ACtox_peak_5k <-  test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="ACtox") %>%
  distinct(Peakid)

GWAS_CAD_peak_5k <-  test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="CAD") %>%
  distinct(Peakid)

GWAS_HF_peak_5k <-  test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="HF") %>%
  distinct(Peakid)

GWAS_MI_peak_5k <-  test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="MI") %>%
  distinct(Peakid)

GWAS_eQTL_peak_5k <-  test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="eQTL") %>%
  distinct(Peakid)

GWAS_beQTL_peak_5k <-  test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="beQTL") %>%
  distinct(Peakid)

GWAS_DCM_peak_5k <-  test2_5k %>% 
  as.data.frame(.) %>% 
  dplyr::filter(gwas=="DCM") %>%
  distinct(Peakid)

SNP_status_list_5k <- Eight_group_TE %>% 
  mutate(mrc=if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl",                 if_else(Peakid %in% ESR_D$Peakid,"ESR_clop",mrc))) %>% 
  distinct(Peakid,mrc) %>% 
  mutate(SNP_status =if_else(Peakid %in% GWAS_HD_peak_5k$Peakid,"SNP_peak",
                             if_else(Peakid %in% GWAS_ACresp_peak_5k$Peakid,"SNP_peak",
                                     if_else(Peakid %in% GWAS_ACtox_peak_5k$Peakid,"SNP_peak",
                                             if_else(Peakid %in% GWAS_ARR_peak_5k$Peakid,"SNP_peak",
                                                     if_else(Peakid %in% GWAS_DCM_peak_5k$Peakid,"SNP_peak",
                                                     if_else(Peakid %in% GWAS_MI_peak_5k$Peakid,"SNP_peak",
                                                             if_else(Peakid %in% GWAS_CAD_peak_5k$Peakid,"SNP_peak",
                                                                     if_else(Peakid %in% GWAS_HD_peak_5k$Peakid,"SNP_peak",
                                                                             if_else(Peakid %in% GWAS_HF_peak_5k$Peakid,"SNP_peak","not_SNP_peak")))))))))) %>% 
  mutate(HD_status =if_else(Peakid %in% GWAS_HD_peak_5k$Peakid, "SNP_peak", "not_SNP_peak")) %>%
  mutate(ACresp_status= if_else(Peakid %in% GWAS_ACresp_peak_5k$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(ACtox_status=if_else(Peakid %in% GWAS_ACtox_peak_5k$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(ARR_status=if_else(Peakid %in% GWAS_ARR_peak_5k$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(MI_status=if_else(Peakid %in% GWAS_MI_peak_5k$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(CAD_status=if_else(Peakid %in% GWAS_CAD_peak_5k$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(HD_status=if_else(Peakid %in% GWAS_HD_peak_5k$Peakid,"SNP_peak","not_SNP_peak")) %>% 
  mutate(HF_status=if_else(Peakid %in% GWAS_HF_peak_5k$Peakid,"SNP_peak","not_SNP_peak")) %>% 
    mutate(DCM_status=if_else(Peakid %in% GWAS_DCM_peak_5k$Peakid,"SNP_peak","not_SNP_peak")) %>% 
   mutate(eQTL_status=if_else(Peakid %in% GWAS_eQTL_peak_5k$Peakid,"eQTL_peak","not_eQTL_peak")) %>% 
  mutate(beQTL_status=if_else(Peakid %in% GWAS_beQTL_peak_5k$Peakid,"eQTL_peak","not_eQTL_peak"))

SNP_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(SNP_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = SNP_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

ACresp_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(ACresp_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = ACresp_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

ACtox_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(ACtox_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = ACtox_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

ARR_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(ARR_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = ARR_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

CAD_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(CAD_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = CAD_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

HD_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(HD_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = HD_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

HF_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(HF_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = HF_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

MI_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(MI_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = MI_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

DCM_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(DCM_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = DCM_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

eQTL_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(eQTL_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = eQTL_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

base_eQTL_mat_5k <- SNP_status_list_5k %>% 
distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(beQTL_status, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = beQTL_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

SNP chi square results

matrix_list_SNP <- list("SNP"=SNP_mat, "ARR"=ARR_mat,"CAD"= CAD_mat,"HD"= HD_mat,"HF"=HF_mat,"MI"=MI_mat,"DCM"=DCM_mat,"base eQTL_mat"=base_eQTL_mat ,"DOXres eQTL"=eQTL_mat,"SNP_5k"=SNP_mat_5k, "ARR_5k"=ARR_mat_5k,"CAD_5k"= CAD_mat_5k,"HD_5k"= HD_mat_5k,"HF_5k"=HF_mat_5k,"MI_5k"=MI_mat_5k,"DCM_5k"=DCM_mat_5k, "base eQTL_mat_5k"=base_eQTL_mat_5k ,"DOXres eQTL_5k"=eQTL_mat_5k)
# saveRDS(matrix_list_SNP,"data/Final_four_data/matrix_list_SNP.RDS")
results_SNP <- data.frame(Matrix_Name = character(),
                      Row_Compared = character(),
                      Chi_Square_Statistic = numeric(),
                      P_Value = numeric(),
                      stringsAsFactors = FALSE)

names_list <- names(matrix_list_SNP)
# Loop through each matrix in the list
for (matrix_name in names_list) {
  current_matrix <- matrix_list_SNP[[matrix_name]]
  n_rows <- nrow(current_matrix)
  
  # Print matrix details for debugging
  cat("Processing Matrix:", matrix_name, "\n")
  print(current_matrix)
  
  # Loop through each row of the current matrix (except the last row)
  for (i in 1:(n_rows - 1)) {
    # Print row details for debugging
    cat("Comparing row", i, "with last row:\n")
    print(current_matrix[i, ])
    print(current_matrix[n_rows, ])
    
    # Perform chi-square test between row i and the last row
    test_result <- tryCatch({
      chisq.test(rbind(current_matrix[i, ], current_matrix[n_rows, ]))
    }, error = function(e) {
      cat("Error in chi-square test:", e$message, "\n")
      return(NULL)
    })
    
    # Only store the result if test_result is valid (i.e., not NULL)
    if (!is.null(test_result)) {
      results_SNP <- rbind(results_SNP, data.frame(Matrix_Name = matrix_name,
                                           Row_Compared = rownames(current_matrix)[i],
                                           Chi_Square_Statistic = test_result$statistic,
                                           P_Value = test_result$p.value))
    }
  }
}

Processing Matrix: SNP 
          SNP_peak not_SNP_peak
EAR_open         6         3152
EAR_close        4         4292
ESR_open         6         5266
ESR_close       20         9329
ESR_opcl         1           98
LR_open         46        28491
LR_close        32        14040
NR             155        86173
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           6         3152 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           4         4292 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
           6         5266 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
          20         9329 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
           1           98 
    SNP_peak not_SNP_peak 
         155        86173 

Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
          46        28491 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 7 with last row:
    SNP_peak not_SNP_peak 
          32        14040 
    SNP_peak not_SNP_peak 
         155        86173 
Processing Matrix: ARR 
          SNP_peak not_SNP_peak
EAR_open         2         3156
ESR_open         3         5269
ESR_close        9         9340
ESR_opcl         1           98
LR_open         10        28527
LR_close         7        14065
NR              44        86284
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           2         3156 
    SNP_peak not_SNP_peak 
          44        86284 

Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           3         5269 
    SNP_peak not_SNP_peak 
          44        86284 

Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
           9         9340 
    SNP_peak not_SNP_peak 
          44        86284 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
           1           98 
    SNP_peak not_SNP_peak 
          44        86284 

Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
          10        28527 
    SNP_peak not_SNP_peak 
          44        86284 
Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
           7        14065 
    SNP_peak not_SNP_peak 
          44        86284 
Processing Matrix: CAD 
          SNP_peak not_SNP_peak
EAR_open         5         3153
EAR_close        3         4293
ESR_open         2         5270
ESR_close        8         9341
LR_open         24        28513
LR_close        15        14057
NR              78        86250
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           5         3153 
    SNP_peak not_SNP_peak 
          78        86250 

Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           3         4293 
    SNP_peak not_SNP_peak 
          78        86250 

Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
           2         5270 
    SNP_peak not_SNP_peak 
          78        86250 

Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
           8         9341 
    SNP_peak not_SNP_peak 
          78        86250 
Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
          24        28513 
    SNP_peak not_SNP_peak 
          78        86250 
Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
          15        14057 
    SNP_peak not_SNP_peak 
          78        86250 
Processing Matrix: HD 
          SNP_peak not_SNP_peak
EAR_open         6         3152
EAR_close        4         4292
ESR_open         6         5266
ESR_close       20         9329
ESR_opcl         1           98
LR_open         44        28493
LR_close        32        14040
NR             155        86173
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           6         3152 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           4         4292 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
           6         5266 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
          20         9329 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
           1           98 
    SNP_peak not_SNP_peak 
         155        86173 

Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
          44        28493 
    SNP_peak not_SNP_peak 
         155        86173 
Comparing row 7 with last row:
    SNP_peak not_SNP_peak 
          32        14040 
    SNP_peak not_SNP_peak 
         155        86173 
Processing Matrix: HF 
          SNP_peak not_SNP_peak
EAR_open         1         3157
ESR_open         1         5271
ESR_close        1         9348
LR_open          8        28529
LR_close         5        14067
NR              10        86318
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           1         3157 
    SNP_peak not_SNP_peak 
          10        86318 

Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           1         5271 
    SNP_peak not_SNP_peak 
          10        86318 

Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
           1         9348 
    SNP_peak not_SNP_peak 
          10        86318 

Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
           8        28529 
    SNP_peak not_SNP_peak 
          10        86318 

Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
           5        14067 
    SNP_peak not_SNP_peak 
          10        86318 

Processing Matrix: MI 
         SNP_peak not_SNP_peak
EAR_open        1         3157
LR_open         3        28534
LR_close        3        14069
NR             11        86317
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           1         3157 
    SNP_peak not_SNP_peak 
          11        86317 

Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           3        28534 
    SNP_peak not_SNP_peak 
          11        86317 

Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
           3        14069 
    SNP_peak not_SNP_peak 
          11        86317 

Processing Matrix: DCM 
         SNP_peak not_SNP_peak
LR_open         1        28536
LR_close        1        14071
NR              1        86327
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           1        28536 
    SNP_peak not_SNP_peak 
           1        86327 

Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           1        14071 
    SNP_peak not_SNP_peak 
           1        86327 

Processing Matrix: base eQTL_mat 
          eQTL_peak not_eQTL_peak
ESR_open          2          5270
ESR_close         1          9348
LR_open           5         28532
LR_close          6         14066
NR               31         86297
Comparing row 1 with last row:
    eQTL_peak not_eQTL_peak 
            2          5270 
    eQTL_peak not_eQTL_peak 
           31         86297 

Comparing row 2 with last row:
    eQTL_peak not_eQTL_peak 
            1          9348 
    eQTL_peak not_eQTL_peak 
           31         86297 

Comparing row 3 with last row:
    eQTL_peak not_eQTL_peak 
            5         28532 
    eQTL_peak not_eQTL_peak 
           31         86297 
Comparing row 4 with last row:
    eQTL_peak not_eQTL_peak 
            6         14066 
    eQTL_peak not_eQTL_peak 
           31         86297 
Processing Matrix: DOXres eQTL 
          eQTL_peak not_eQTL_peak
EAR_open          1          3157
ESR_open          1          5271
ESR_close         1          9348
LR_open           6         28531
LR_close          3         14069
NR               16         86312
Comparing row 1 with last row:
    eQTL_peak not_eQTL_peak 
            1          3157 
    eQTL_peak not_eQTL_peak 
           16         86312 

Comparing row 2 with last row:
    eQTL_peak not_eQTL_peak 
            1          5271 
    eQTL_peak not_eQTL_peak 
           16         86312 

Comparing row 3 with last row:
    eQTL_peak not_eQTL_peak 
            1          9348 
    eQTL_peak not_eQTL_peak 
           16         86312 

Comparing row 4 with last row:
    eQTL_peak not_eQTL_peak 
            6         28531 
    eQTL_peak not_eQTL_peak 
           16         86312 
Comparing row 5 with last row:
    eQTL_peak not_eQTL_peak 
            3         14069 
    eQTL_peak not_eQTL_peak 
           16         86312 

Processing Matrix: SNP_5k 
          SNP_peak not_SNP_peak
EAR_open        65         3093
EAR_close       72         4224
ESR_open        92         5180
ESR_close      187         9162
ESR_opcl         2           97
ESR_clop        18         1043
LR_open        435        28102
LR_close       272        13800
NR            1462        84866
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
          65         3093 
    SNP_peak not_SNP_peak 
        1462        84866 
Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
          72         4224 
    SNP_peak not_SNP_peak 
        1462        84866 
Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
          92         5180 
    SNP_peak not_SNP_peak 
        1462        84866 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
         187         9162 
    SNP_peak not_SNP_peak 
        1462        84866 
Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
           2           97 
    SNP_peak not_SNP_peak 
        1462        84866 

Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
          18         1043 
    SNP_peak not_SNP_peak 
        1462        84866 
Comparing row 7 with last row:
    SNP_peak not_SNP_peak 
         435        28102 
    SNP_peak not_SNP_peak 
        1462        84866 
Comparing row 8 with last row:
    SNP_peak not_SNP_peak 
         272        13800 
    SNP_peak not_SNP_peak 
        1462        84866 
Processing Matrix: ARR_5k 
          SNP_peak not_SNP_peak
EAR_open        17         3141
EAR_close       12         4284
ESR_open        22         5250
ESR_close       46         9303
ESR_opcl         2           97
ESR_clop         5         1056
LR_open         92        28445
LR_close        66        14006
NR             315        86013
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
          17         3141 
    SNP_peak not_SNP_peak 
         315        86013 
Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
          12         4284 
    SNP_peak not_SNP_peak 
         315        86013 
Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
          22         5250 
    SNP_peak not_SNP_peak 
         315        86013 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
          46         9303 
    SNP_peak not_SNP_peak 
         315        86013 
Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
           2           97 
    SNP_peak not_SNP_peak 
         315        86013 

Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
           5         1056 
    SNP_peak not_SNP_peak 
         315        86013 

Comparing row 7 with last row:
    SNP_peak not_SNP_peak 
          92        28445 
    SNP_peak not_SNP_peak 
         315        86013 
Comparing row 8 with last row:
    SNP_peak not_SNP_peak 
          66        14006 
    SNP_peak not_SNP_peak 
         315        86013 
Processing Matrix: CAD_5k 
          SNP_peak not_SNP_peak
EAR_open        31         3127
EAR_close       39         4257
ESR_open        51         5221
ESR_close       93         9256
ESR_clop        11         1050
LR_open        226        28311
LR_close       137        13935
NR             795        85533
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
          31         3127 
    SNP_peak not_SNP_peak 
         795        85533 
Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
          39         4257 
    SNP_peak not_SNP_peak 
         795        85533 
Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
          51         5221 
    SNP_peak not_SNP_peak 
         795        85533 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
          93         9256 
    SNP_peak not_SNP_peak 
         795        85533 
Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
          11         1050 
    SNP_peak not_SNP_peak 
         795        85533 
Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
         226        28311 
    SNP_peak not_SNP_peak 
         795        85533 
Comparing row 7 with last row:
    SNP_peak not_SNP_peak 
         137        13935 
    SNP_peak not_SNP_peak 
         795        85533 
Processing Matrix: HD_5k 
          SNP_peak not_SNP_peak
EAR_open        63         3095
EAR_close       72         4224
ESR_open        91         5181
ESR_close      186         9163
ESR_opcl         2           97
ESR_clop        17         1044
LR_open        429        28108
LR_close       271        13801
NR            1454        84874
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
          63         3095 
    SNP_peak not_SNP_peak 
        1454        84874 
Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
          72         4224 
    SNP_peak not_SNP_peak 
        1454        84874 
Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
          91         5181 
    SNP_peak not_SNP_peak 
        1454        84874 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
         186         9163 
    SNP_peak not_SNP_peak 
        1454        84874 
Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
           2           97 
    SNP_peak not_SNP_peak 
        1454        84874 

Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
          17         1044 
    SNP_peak not_SNP_peak 
        1454        84874 
Comparing row 7 with last row:
    SNP_peak not_SNP_peak 
         429        28108 
    SNP_peak not_SNP_peak 
        1454        84874 
Comparing row 8 with last row:
    SNP_peak not_SNP_peak 
         271        13801 
    SNP_peak not_SNP_peak 
        1454        84874 
Processing Matrix: HF_5k 
          SNP_peak not_SNP_peak
EAR_open         9         3149
EAR_close        6         4290
ESR_open        18         5254
ESR_close       15         9334
ESR_clop         2         1059
LR_open         49        28488
LR_close        28        14044
NR             163        86165
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           9         3149 
    SNP_peak not_SNP_peak 
         163        86165 
Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           6         4290 
    SNP_peak not_SNP_peak 
         163        86165 
Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
          18         5254 
    SNP_peak not_SNP_peak 
         163        86165 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
          15         9334 
    SNP_peak not_SNP_peak 
         163        86165 
Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
           2         1059 
    SNP_peak not_SNP_peak 
         163        86165 

Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
          49        28488 
    SNP_peak not_SNP_peak 
         163        86165 
Comparing row 7 with last row:
    SNP_peak not_SNP_peak 
          28        14044 
    SNP_peak not_SNP_peak 
         163        86165 
Processing Matrix: MI_5k 
          SNP_peak not_SNP_peak
EAR_open         6         3152
EAR_close        9         4287
ESR_open         8         5264
ESR_close       22         9327
ESR_clop         1         1060
LR_open         56        28481
LR_close        31        14041
NR             174        86154
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           6         3152 
    SNP_peak not_SNP_peak 
         174        86154 
Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           9         4287 
    SNP_peak not_SNP_peak 
         174        86154 
Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
           8         5264 
    SNP_peak not_SNP_peak 
         174        86154 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
          22         9327 
    SNP_peak not_SNP_peak 
         174        86154 
Comparing row 5 with last row:
    SNP_peak not_SNP_peak 
           1         1060 
    SNP_peak not_SNP_peak 
         174        86154 

Comparing row 6 with last row:
    SNP_peak not_SNP_peak 
          56        28481 
    SNP_peak not_SNP_peak 
         174        86154 
Comparing row 7 with last row:
    SNP_peak not_SNP_peak 
          31        14041 
    SNP_peak not_SNP_peak 
         174        86154 
Processing Matrix: DCM_5k 
          SNP_peak not_SNP_peak
EAR_close        1         4295
ESR_close        3         9346
LR_open          9        28528
LR_close         4        14068
NR              23        86305
Comparing row 1 with last row:
    SNP_peak not_SNP_peak 
           1         4295 
    SNP_peak not_SNP_peak 
          23        86305 

Comparing row 2 with last row:
    SNP_peak not_SNP_peak 
           3         9346 
    SNP_peak not_SNP_peak 
          23        86305 

Comparing row 3 with last row:
    SNP_peak not_SNP_peak 
           9        28528 
    SNP_peak not_SNP_peak 
          23        86305 
Comparing row 4 with last row:
    SNP_peak not_SNP_peak 
           4        14068 
    SNP_peak not_SNP_peak 
          23        86305 

Processing Matrix: base eQTL_mat_5k 
          eQTL_peak not_eQTL_peak
EAR_open          9          3149
EAR_close         9          4287
ESR_open         19          5253
ESR_close        26          9323
ESR_opcl          1            98
ESR_clop          3          1058
LR_open          59         28478
LR_close         40         14032
NR              287         86041
Comparing row 1 with last row:
    eQTL_peak not_eQTL_peak 
            9          3149 
    eQTL_peak not_eQTL_peak 
          287         86041 
Comparing row 2 with last row:
    eQTL_peak not_eQTL_peak 
            9          4287 
    eQTL_peak not_eQTL_peak 
          287         86041 
Comparing row 3 with last row:
    eQTL_peak not_eQTL_peak 
           19          5253 
    eQTL_peak not_eQTL_peak 
          287         86041 
Comparing row 4 with last row:
    eQTL_peak not_eQTL_peak 
           26          9323 
    eQTL_peak not_eQTL_peak 
          287         86041 
Comparing row 5 with last row:
    eQTL_peak not_eQTL_peak 
            1            98 
    eQTL_peak not_eQTL_peak 
          287         86041 

Comparing row 6 with last row:
    eQTL_peak not_eQTL_peak 
            3          1058 
    eQTL_peak not_eQTL_peak 
          287         86041 

Comparing row 7 with last row:
    eQTL_peak not_eQTL_peak 
           59         28478 
    eQTL_peak not_eQTL_peak 
          287         86041 
Comparing row 8 with last row:
    eQTL_peak not_eQTL_peak 
           40         14032 
    eQTL_peak not_eQTL_peak 
          287         86041 
Processing Matrix: DOXres eQTL_5k 
          eQTL_peak not_eQTL_peak
EAR_open         12          3146
EAR_close         5          4291
ESR_open         18          5254
ESR_close        16          9333
ESR_clop          3          1058
LR_open          55         28482
LR_close         23         14049
NR              185         86143
Comparing row 1 with last row:
    eQTL_peak not_eQTL_peak 
           12          3146 
    eQTL_peak not_eQTL_peak 
          185         86143 
Comparing row 2 with last row:
    eQTL_peak not_eQTL_peak 
            5          4291 
    eQTL_peak not_eQTL_peak 
          185         86143 
Comparing row 3 with last row:
    eQTL_peak not_eQTL_peak 
           18          5254 
    eQTL_peak not_eQTL_peak 
          185         86143 
Comparing row 4 with last row:
    eQTL_peak not_eQTL_peak 
           16          9333 
    eQTL_peak not_eQTL_peak 
          185         86143 
Comparing row 5 with last row:
    eQTL_peak not_eQTL_peak 
            3          1058 
    eQTL_peak not_eQTL_peak 
          185         86143 

Comparing row 6 with last row:
    eQTL_peak not_eQTL_peak 
           55         28482 
    eQTL_peak not_eQTL_peak 
          185         86143 
Comparing row 7 with last row:
    eQTL_peak not_eQTL_peak 
           23         14049 
    eQTL_peak not_eQTL_peak 
          185         86143 

# Print the resulting dataframe

# saveRDS(results_SNP,"data/Final_four_data/SNP_chisquare_results.RDS")
print(results_SNP) %>% 
   kable(., caption = " Chi squre results and significance values of SNP enrichment compared to No response group") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) %>% 
  scroll_box(width = "100%", height = "400px")

                  Matrix_Name Row_Compared Chi_Square_Statistic      P_Value
X-squared                 SNP     EAR_open         7.785422e-28 1.0000000000
X-squared1                SNP    EAR_close         1.287132e+00 0.2565771247
X-squared2                SNP     ESR_open         8.778026e-01 0.3488042452
X-squared3                SNP    ESR_close         3.740109e-01 0.5408260845
X-squared4                SNP     ESR_opcl         5.794410e-01 0.4465314976
X-squared5                SNP      LR_open         3.151888e-01 0.5745134651
X-squared6                SNP     LR_close         1.244148e+00 0.2646731455
X-squared7                ARR     EAR_open         4.415945e-28 1.0000000000
X-squared8                ARR     ESR_open         1.025346e-23 1.0000000000
X-squared9                ARR    ESR_close         2.361781e+00 0.1243401914
X-squared10               ARR     ESR_opcl         3.908055e+00 0.0480551698
X-squared11               ARR      LR_open         8.435697e-01 0.3583778348
X-squared12               ARR     LR_close         9.748165e-28 1.0000000000
X-squared13               CAD     EAR_open         8.741077e-01 0.3498206356
X-squared14               CAD    EAR_close         3.159099e-02 0.8589283237
X-squared15               CAD     ESR_open         1.021401e+00 0.3121869459
X-squared16               CAD    ESR_close         2.769998e-29 1.0000000000
X-squared17               CAD      LR_open         3.715468e-02 0.8471504570
X-squared18               CAD     LR_close         1.917172e-01 0.6614912688
X-squared19                HD     EAR_open         7.785422e-28 1.0000000000
X-squared20                HD    EAR_close         1.287132e+00 0.2565771247
X-squared21                HD     ESR_open         8.778026e-01 0.3488042452
X-squared22                HD    ESR_close         3.740109e-01 0.5408260845
X-squared23                HD     ESR_opcl         5.794410e-01 0.4465314976
X-squared24                HD      LR_open         6.577691e-01 0.4173486320
X-squared25                HD     LR_close         1.244148e+00 0.2646731455
X-squared26                HF     EAR_open         3.338344e-02 0.8550245045
X-squared27                HF     ESR_open         1.237212e-29 1.0000000000
X-squared28                HF    ESR_close         3.906310e-25 1.0000000000
X-squared29                HF      LR_open         2.728654e+00 0.0985623433
X-squared30                HF     LR_close         3.180464e+00 0.0745235681
X-squared31                MI     EAR_open         1.433223e-02 0.9047070933
X-squared32                MI      LR_open         5.900973e-26 1.0000000000
X-squared33                MI     LR_close         1.714288e-01 0.6788450740
X-squared34               DCM      LR_open         2.608530e-05 0.9959249202
X-squared35               DCM     LR_close         2.002279e-01 0.6545369310
X-squared36     base eQTL_mat     ESR_open         1.048471e-28 1.0000000000
X-squared37     base eQTL_mat    ESR_close         9.384058e-01 0.3326881790
X-squared38     base eQTL_mat      LR_open         1.764941e+00 0.1840094001
X-squared39     base eQTL_mat     LR_close         2.213421e-02 0.8817306180
X-squared40       DOXres eQTL     EAR_open         2.046586e-23 1.0000000000
X-squared41       DOXres eQTL     ESR_open         6.607946e-24 1.0000000000
X-squared42       DOXres eQTL    ESR_close         1.732764e-02 0.8952734115
X-squared43       DOXres eQTL      LR_open         2.869883e-04 0.9864839002
X-squared44       DOXres eQTL     LR_close         3.991306e-28 1.0000000000
X-squared45            SNP_5k     EAR_open         2.203616e+00 0.1376873789
X-squared46            SNP_5k    EAR_close         7.026767e-04 0.9788521136
X-squared47            SNP_5k     ESR_open         5.122146e-02 0.8209513043
X-squared48            SNP_5k    ESR_close         4.504486e+00 0.0338060482
X-squared49            SNP_5k     ESR_opcl         4.839571e-28 1.0000000000
X-squared50            SNP_5k     ESR_clop         2.766301e-24 1.0000000000
X-squared51            SNP_5k      LR_open         3.677020e+00 0.0551673662
X-squared52            SNP_5k     LR_close         3.945106e+00 0.0470078947
X-squared53            ARR_5k     EAR_open         2.032019e+00 0.1540158907
X-squared54            ARR_5k    EAR_close         6.122354e-01 0.4339473690
X-squared55            ARR_5k     ESR_open         2.430913e-01 0.6219822691
X-squared56            ARR_5k    ESR_close         3.297423e+00 0.0693886569
X-squared57            ARR_5k     ESR_opcl         3.576689e+00 0.0585958458
X-squared58            ARR_5k     ESR_clop         9.885939e-02 0.7532027254
X-squared59            ARR_5k      LR_open         9.800756e-01 0.3221801441
X-squared60            ARR_5k     LR_close         3.200408e+00 0.0736198815
X-squared61            CAD_5k     EAR_open         6.542221e-02 0.7981225220
X-squared62            CAD_5k    EAR_close         3.374934e-05 0.9953647807
X-squared63            CAD_5k     ESR_open         7.196385e-02 0.7884985934
X-squared64            CAD_5k    ESR_close         4.232671e-01 0.5153113158
X-squared65            CAD_5k     ESR_clop         5.326583e-02 0.8174749125
X-squared66            CAD_5k      LR_open         3.903204e+00 0.0481941010
X-squared67            CAD_5k     LR_close         3.098052e-01 0.5777997773
X-squared68             HD_5k     EAR_open         1.582812e+00 0.2083560465
X-squared69             HD_5k    EAR_close         5.479299e-28 1.0000000000
X-squared70             HD_5k     ESR_open         3.022932e-02 0.8619709260
X-squared71             HD_5k    ESR_close         4.485827e+00 0.0341770021
X-squared72             HD_5k     ESR_opcl         2.402546e-24 1.0000000000
X-squared73             HD_5k     ESR_clop         7.454216e-03 0.9311978882
X-squared74             HD_5k      LR_open         4.244265e+00 0.0393831135
X-squared75             HD_5k     LR_close         4.038504e+00 0.0444732373
X-squared76             HF_5k     EAR_open         1.010374e+00 0.3148132917
X-squared77             HF_5k    EAR_close         2.998791e-01 0.5839582145
X-squared78             HF_5k     ESR_open         5.119555e+00 0.0236576859
X-squared79             HF_5k    ESR_close         2.287944e-01 0.6324191779
X-squared80             HF_5k     ESR_clop         1.119501e-27 1.0000000000
X-squared81             HF_5k      LR_open         2.541982e-01 0.6141343997
X-squared82             HF_5k     LR_close         2.316742e-02 0.8790225120
X-squared83             MI_5k     EAR_open         4.958219e-24 1.0000000000
X-squared84             MI_5k    EAR_close         4.248229e-24 1.0000000000
X-squared85             MI_5k     ESR_open         3.958782e-01 0.5292256208
X-squared86             MI_5k    ESR_close         3.196954e-01 0.5717907834
X-squared87             MI_5k     ESR_clop         1.863011e-01 0.6660131458
X-squared88             MI_5k      LR_open         9.589163e-03 0.9219924246
X-squared89             MI_5k     LR_close         1.266862e-01 0.7218929378
X-squared90            DCM_5k    EAR_close         2.717302e-23 1.0000000000
X-squared91            DCM_5k    ESR_close         2.759492e-24 1.0000000000
X-squared92            DCM_5k      LR_open         5.063049e-02 0.8219697774
X-squared93            DCM_5k     LR_close         9.572824e-27 1.0000000000
X-squared94  base eQTL_mat_5k     EAR_open         8.909382e-02 0.7653323466
X-squared95  base eQTL_mat_5k    EAR_close         1.541478e+00 0.2143980129
X-squared96  base eQTL_mat_5k     ESR_open         4.769930e-02 0.8271161443
X-squared97  base eQTL_mat_5k    ESR_close         6.065453e-01 0.4360915374
X-squared98  base eQTL_mat_5k     ESR_opcl         8.810358e-02 0.7666020502
X-squared99  base eQTL_mat_5k     ESR_clop         1.262899e-04 0.9910336610
X-squared100 base eQTL_mat_5k      LR_open         1.087004e+01 0.0009773251
X-squared101 base eQTL_mat_5k     LR_close         7.238147e-01 0.3948954538
X-squared102   DOXres eQTL_5k     EAR_open         3.090558e+00 0.0787477793
X-squared103   DOXres eQTL_5k    EAR_close         1.436387e+00 0.2307248349
X-squared104   DOXres eQTL_5k     ESR_open         3.079234e+00 0.0792978411
X-squared105   DOXres eQTL_5k    ESR_close         5.577342e-01 0.4551746287
X-squared106   DOXres eQTL_5k     ESR_clop         2.101954e-02 0.8847257274
X-squared107   DOXres eQTL_5k      LR_open         3.805924e-01 0.5372863491
X-squared108   DOXres eQTL_5k     LR_close         1.277550e+00 0.2583550876

Chi squre results and significance values of SNP enrichment compared to No response group

	Matrix_Name	Row_Compared	Chi_Square_Statistic	P_Value
X-squared	SNP	EAR_open	0.0000000	1.0000000
X-squared1	SNP	EAR_close	1.2871322	0.2565771
X-squared2	SNP	ESR_open	0.8778026	0.3488042
X-squared3	SNP	ESR_close	0.3740109	0.5408261
X-squared4	SNP	ESR_opcl	0.5794410	0.4465315
X-squared5	SNP	LR_open	0.3151888	0.5745135
X-squared6	SNP	LR_close	1.2441479	0.2646731
X-squared7	ARR	EAR_open	0.0000000	1.0000000
X-squared8	ARR	ESR_open	0.0000000	1.0000000
X-squared9	ARR	ESR_close	2.3617806	0.1243402
X-squared10	ARR	ESR_opcl	3.9080555	0.0480552
X-squared11	ARR	LR_open	0.8435697	0.3583778
X-squared12	ARR	LR_close	0.0000000	1.0000000
X-squared13	CAD	EAR_open	0.8741077	0.3498206
X-squared14	CAD	EAR_close	0.0315910	0.8589283
X-squared15	CAD	ESR_open	1.0214009	0.3121869
X-squared16	CAD	ESR_close	0.0000000	1.0000000
X-squared17	CAD	LR_open	0.0371547	0.8471505
X-squared18	CAD	LR_close	0.1917172	0.6614913
X-squared19	HD	EAR_open	0.0000000	1.0000000
X-squared20	HD	EAR_close	1.2871322	0.2565771
X-squared21	HD	ESR_open	0.8778026	0.3488042
X-squared22	HD	ESR_close	0.3740109	0.5408261
X-squared23	HD	ESR_opcl	0.5794410	0.4465315
X-squared24	HD	LR_open	0.6577691	0.4173486
X-squared25	HD	LR_close	1.2441479	0.2646731
X-squared26	HF	EAR_open	0.0333834	0.8550245
X-squared27	HF	ESR_open	0.0000000	1.0000000
X-squared28	HF	ESR_close	0.0000000	1.0000000
X-squared29	HF	LR_open	2.7286536	0.0985623
X-squared30	HF	LR_close	3.1804639	0.0745236
X-squared31	MI	EAR_open	0.0143322	0.9047071
X-squared32	MI	LR_open	0.0000000	1.0000000
X-squared33	MI	LR_close	0.1714288	0.6788451
X-squared34	DCM	LR_open	0.0000261	0.9959249
X-squared35	DCM	LR_close	0.2002279	0.6545369
X-squared36	base eQTL_mat	ESR_open	0.0000000	1.0000000
X-squared37	base eQTL_mat	ESR_close	0.9384058	0.3326882
X-squared38	base eQTL_mat	LR_open	1.7649411	0.1840094
X-squared39	base eQTL_mat	LR_close	0.0221342	0.8817306
X-squared40	DOXres eQTL	EAR_open	0.0000000	1.0000000
X-squared41	DOXres eQTL	ESR_open	0.0000000	1.0000000
X-squared42	DOXres eQTL	ESR_close	0.0173276	0.8952734
X-squared43	DOXres eQTL	LR_open	0.0002870	0.9864839
X-squared44	DOXres eQTL	LR_close	0.0000000	1.0000000
X-squared45	SNP_5k	EAR_open	2.2036164	0.1376874
X-squared46	SNP_5k	EAR_close	0.0007027	0.9788521
X-squared47	SNP_5k	ESR_open	0.0512215	0.8209513
X-squared48	SNP_5k	ESR_close	4.5044863	0.0338060
X-squared49	SNP_5k	ESR_opcl	0.0000000	1.0000000
X-squared50	SNP_5k	ESR_clop	0.0000000	1.0000000
X-squared51	SNP_5k	LR_open	3.6770200	0.0551674
X-squared52	SNP_5k	LR_close	3.9451059	0.0470079
X-squared53	ARR_5k	EAR_open	2.0320190	0.1540159
X-squared54	ARR_5k	EAR_close	0.6122354	0.4339474
X-squared55	ARR_5k	ESR_open	0.2430913	0.6219823
X-squared56	ARR_5k	ESR_close	3.2974231	0.0693887
X-squared57	ARR_5k	ESR_opcl	3.5766886	0.0585958
X-squared58	ARR_5k	ESR_clop	0.0988594	0.7532027
X-squared59	ARR_5k	LR_open	0.9800756	0.3221801
X-squared60	ARR_5k	LR_close	3.2004085	0.0736199
X-squared61	CAD_5k	EAR_open	0.0654222	0.7981225
X-squared62	CAD_5k	EAR_close	0.0000337	0.9953648
X-squared63	CAD_5k	ESR_open	0.0719638	0.7884986
X-squared64	CAD_5k	ESR_close	0.4232671	0.5153113
X-squared65	CAD_5k	ESR_clop	0.0532658	0.8174749
X-squared66	CAD_5k	LR_open	3.9032044	0.0481941
X-squared67	CAD_5k	LR_close	0.3098052	0.5777998
X-squared68	HD_5k	EAR_open	1.5828125	0.2083560
X-squared69	HD_5k	EAR_close	0.0000000	1.0000000
X-squared70	HD_5k	ESR_open	0.0302293	0.8619709
X-squared71	HD_5k	ESR_close	4.4858272	0.0341770
X-squared72	HD_5k	ESR_opcl	0.0000000	1.0000000
X-squared73	HD_5k	ESR_clop	0.0074542	0.9311979
X-squared74	HD_5k	LR_open	4.2442650	0.0393831
X-squared75	HD_5k	LR_close	4.0385037	0.0444732
X-squared76	HF_5k	EAR_open	1.0103739	0.3148133
X-squared77	HF_5k	EAR_close	0.2998791	0.5839582
X-squared78	HF_5k	ESR_open	5.1195548	0.0236577
X-squared79	HF_5k	ESR_close	0.2287944	0.6324192
X-squared80	HF_5k	ESR_clop	0.0000000	1.0000000
X-squared81	HF_5k	LR_open	0.2541982	0.6141344
X-squared82	HF_5k	LR_close	0.0231674	0.8790225
X-squared83	MI_5k	EAR_open	0.0000000	1.0000000
X-squared84	MI_5k	EAR_close	0.0000000	1.0000000
X-squared85	MI_5k	ESR_open	0.3958782	0.5292256
X-squared86	MI_5k	ESR_close	0.3196954	0.5717908
X-squared87	MI_5k	ESR_clop	0.1863011	0.6660131
X-squared88	MI_5k	LR_open	0.0095892	0.9219924
X-squared89	MI_5k	LR_close	0.1266862	0.7218929
X-squared90	DCM_5k	EAR_close	0.0000000	1.0000000
X-squared91	DCM_5k	ESR_close	0.0000000	1.0000000
X-squared92	DCM_5k	LR_open	0.0506305	0.8219698
X-squared93	DCM_5k	LR_close	0.0000000	1.0000000
X-squared94	base eQTL_mat_5k	EAR_open	0.0890938	0.7653323
X-squared95	base eQTL_mat_5k	EAR_close	1.5414775	0.2143980
X-squared96	base eQTL_mat_5k	ESR_open	0.0476993	0.8271161
X-squared97	base eQTL_mat_5k	ESR_close	0.6065453	0.4360915
X-squared98	base eQTL_mat_5k	ESR_opcl	0.0881036	0.7666021
X-squared99	base eQTL_mat_5k	ESR_clop	0.0001263	0.9910337
X-squared100	base eQTL_mat_5k	LR_open	10.8700383	0.0009773
X-squared101	base eQTL_mat_5k	LR_close	0.7238147	0.3948955
X-squared102	DOXres eQTL_5k	EAR_open	3.0905584	0.0787478
X-squared103	DOXres eQTL_5k	EAR_close	1.4363874	0.2307248
X-squared104	DOXres eQTL_5k	ESR_open	3.0792345	0.0792978
X-squared105	DOXres eQTL_5k	ESR_close	0.5577342	0.4551746
X-squared106	DOXres eQTL_5k	ESR_clop	0.0210195	0.8847257
X-squared107	DOXres eQTL_5k	LR_open	0.3805924	0.5372863
X-squared108	DOXres eQTL_5k	LR_close	1.2775499	0.2583551

odds ratio results

results_SNP_or <- data.frame(Matrix_Name = character(),
                      Row_Compared = character(),
                      Odds_Ratio = numeric(),
                      Lower_CI = numeric(),
                      Upper_CI = numeric(),
                      P_Value = numeric(),
                      stringsAsFactors = FALSE)

# Loop through each matrix in the list
for (matrix_name in names(matrix_list_SNP)) {
  current_matrix <- matrix_list_SNP[[matrix_name]]
  n_rows <- nrow(current_matrix)
  
  # Loop through each row of the current matrix (except the last row)
  for (i in 1:(n_rows - 1)) {
    # Perform odds ratio test between row i and the last row using epitools
    test_result <- tryCatch({
      contingency_table <- rbind(current_matrix[i, ], current_matrix[n_rows, ])
      
      # Check if any row in the contingency table contains only zeros
      if (any(rowSums(contingency_table) == 0)) {
        stop("Contingency table contains empty rows.")
      }
      
      oddsratio_result <- oddsratio(contingency_table)
       # Ensure the oddsratio result has at least 2 rows
      if (nrow(oddsratio_result$measure) < 2) {
        stop("oddsratio result does not have enough data.")
      }
      
     
      
      list(oddsratio = oddsratio_result, p.value = oddsratio_result$p.value[2,"chi.square"])
      
    }, error = function(e) {
      cat("Error in odds ratio test for row", i, "in matrix", matrix_name, ":", e$message, "\n")
      return(NULL)
    })
    
    # Only store the result if test_result is valid (i.e., not NULL)
    if (!is.null(test_result)) {
      or_value <- test_result$oddsratio$measure[2, "estimate"]
      lower_ci <- test_result$oddsratio$measure[2, "lower"]
      upper_ci <- test_result$oddsratio$measure[2, "upper"]
      p_value <- test_result$oddsratio$p.value[2,"chi.square"]
      
      # Check if the values are numeric and valid (not NA)
      if (!is.na(or_value) && !is.na(lower_ci) && !is.na(upper_ci) && !is.na(p_value)) {
        # Store the results in the dataframe
        results_SNP_or <- rbind(results_SNP_or, data.frame(Matrix_Name = matrix_name,
                                             Row_Compared = rownames(current_matrix)[i],
                                             Odds_Ratio = or_value,
                                             Lower_CI = lower_ci,
                                             Upper_CI = upper_ci,
                                             P_Value = p_value))
      }
    }
  }
}

# Print the resulting dataframe

# saveRDS(results_SNP_or,"data/Final_four_data/SNP_oddsratio_results.RDS")
print(results_SNP_or) %>% 
  kable(., caption = "Odd ratio results and significance values of SNP enrichment compared to No response group") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) %>% 
  scroll_box(width = "100%", height = "400px")

                 Matrix_Name Row_Compared Odds_Ratio   Lower_CI    Upper_CI
estimate                 SNP     EAR_open  1.0858175 0.42280950   2.2472654
estimate1                SNP    EAR_close  0.5384223 0.16272678   1.2723227
estimate2                SNP     ESR_open  0.6499263 0.25315208   1.3445354
estimate3                SNP    ESR_close  1.2004451 0.72956548   1.8665169
estimate4                SNP     ESR_opcl  6.4848295 0.27932461  28.8566752
estimate5                SNP      LR_open  0.8999029 0.64018292   1.2401964
estimate6                SNP     LR_close  1.2723270 0.85376049   1.8361786
estimate7                ARR     EAR_open  1.3345765 0.20248281   4.3172023
estimate8                ARR     ESR_open  1.1714557 0.27449628   3.2121530
estimate9                ARR    ESR_close  1.9168451 0.87036409   3.7521490
estimate10               ARR     ESR_opcl 22.8116771 0.97031080 104.9295652
estimate11               ARR      LR_open  0.6960991 0.32888162   1.3294337
estimate12               ARR     LR_close  0.9950238 0.40584598   2.0751544
estimate13               CAD     EAR_open  1.8065179 0.62651779   4.0348451
estimate14               CAD    EAR_close  0.8120546 0.19275817   2.1708829
estimate15               CAD     ESR_open  0.4514148 0.06922466   1.4264815
estimate16               CAD    ESR_close  0.9643694 0.42630280   1.8782082
estimate17               CAD      LR_open  0.9351682 0.57872607   1.4554923
estimate18               CAD     LR_close  1.1903986 0.65716087   2.0093777
estimate19                HD     EAR_open  1.0858175 0.42280950   2.2472654
estimate20                HD    EAR_close  0.5384223 0.16272678   1.2723227
estimate21                HD     ESR_open  0.6499263 0.25315208   1.3445354
estimate22                HD    ESR_close  1.2004451 0.72956548   1.8665169
estimate23                HD     ESR_opcl  6.4848295 0.27932461  28.8566752
estimate24                HD      LR_open  0.8608660 0.60851347   1.1925075
estimate25                HD     LR_close  1.2723270 0.85376049   1.8361786
estimate26                HF     EAR_open  3.0845778 0.12486503  16.3071632
estimate27                HF     ESR_open  1.8475247 0.07480568   9.7600095
estimate28                HF    ESR_close  1.0417712 0.04219741   5.5040897
estimate29                HF      LR_open  2.4301331 0.91448013   6.2401916
estimate30                HF     LR_close  3.1165208 0.94734745   8.9091125
estimate31                MI     EAR_open  2.8081156 0.11441562  14.5693377
estimate32                MI      LR_open  0.8561585 0.18485153   2.7870652
estimate33                MI     LR_close  1.7363959 0.37485452   5.6531806
estimate34               DCM      LR_open  3.0251592 0.07756646 117.8480869
estimate35               DCM     LR_close  6.1349159 0.15729939 238.7133228
estimate36     base eQTL_mat     ESR_open  1.1328456 0.17018904   3.7456170
estimate37     base eQTL_mat    ESR_close  0.3395755 0.01446695   1.5610803
estimate38     base eQTL_mat      LR_open  0.5010065 0.16830841   1.1842194
estimate39     base eQTL_mat     LR_close  1.2132476 0.45074068   2.7197080
estimate40       DOXres eQTL     EAR_open  1.9391119 0.08066270   9.4878449
estimate41       DOXres eQTL     ESR_open  1.1614311 0.04832534   5.6816654
estimate42       DOXres eQTL    ESR_close  0.6548993 0.02726197   3.2035178
estimate43       DOXres eQTL      LR_open  1.1534228 0.40733877   2.8300963
estimate44       DOXres eQTL     LR_close  1.1991412 0.26754173   3.6366874
estimate45            SNP_5k     EAR_open  1.2228044 0.94209446   1.5579753
estimate46            SNP_5k    EAR_close  0.9915919 0.77425937   1.2489294
estimate47            SNP_5k     ESR_open  1.0326840 0.82936898   1.2694475
estimate48            SNP_5k    ESR_close  1.1856789 1.01361925   1.3788786
estimate49            SNP_5k     ESR_opcl  1.2878538 0.19792206   4.0507406
estimate50            SNP_5k     ESR_clop  1.0107270 0.60856965   1.5647201
estimate51            SNP_5k      LR_open  0.8987820 0.80601625   1.0002050
estimate52            SNP_5k     LR_close  1.1446745 1.00253007   1.3021244
estimate53            ARR_5k     EAR_open  1.4913979 0.87838804   2.3556255
estimate54            ARR_5k    EAR_close  0.7749385 0.41013315   1.3181080
estimate55            ARR_5k     ESR_open  1.1522139 0.72505808   1.7335698
estimate56            ARR_5k    ESR_close  1.3543152 0.98045715   1.8265556
estimate57            ARR_5k     ESR_opcl  6.0554552 0.92813443  19.1586168
estimate58            ARR_5k     ESR_clop  1.3339717 0.46993004   2.8998496
estimate59            ARR_5k      LR_open  0.8842799 0.69699567   1.1109223
estimate60            ARR_5k     LR_close  1.2892841 0.98001337   1.6702516
estimate61            CAD_5k     EAR_open  1.0720424 0.73165302   1.5096192
estimate62            CAD_5k    EAR_close  0.9896163 0.70464057   1.3471115
estimate63            CAD_5k     ESR_open  1.0541263 0.78329211   1.3857623
estimate64            CAD_5k    ESR_close  1.0826910 0.86693349   1.3359510
estimate65            CAD_5k     ESR_clop  1.1435750 0.58886885   1.9758533
estimate66            CAD_5k      LR_open  0.8593070 0.73923507   0.9948331
estimate67            CAD_5k     LR_close  1.0588231 0.87889975   1.2657602
estimate68             HD_5k     EAR_open  1.1911611 0.91396758   1.5229608
estimate69             HD_5k    EAR_close  0.9971447 0.77856816   1.2559217
estimate70             HD_5k     ESR_open  1.0270004 0.82382669   1.2637638
estimate71             HD_5k    ESR_close  1.1858145 1.01330690   1.3795890
estimate72             HD_5k     ESR_opcl  1.2950606 0.19902918   4.0734758
estimate73             HD_5k     ESR_clop  0.9595006 0.56873806   1.5024118
estimate74             HD_5k      LR_open  0.8911599 0.79866619   0.9923524
estimate75             HD_5k     LR_close  1.1467672 1.00409460   1.3048761
estimate76             HF_5k     EAR_open  1.5367619 0.72450796   2.8366399
estimate77             HF_5k    EAR_close  0.7586351 0.29563427   1.5679667
estimate78             HF_5k     ESR_open  1.8257607 1.08142499   2.8905697
estimate79             HF_5k    ESR_close  0.8579788 0.48333360   1.4071558
estimate80             HF_5k     ESR_clop  1.0749307 0.16590136   3.3498648
estimate81             HF_5k      LR_open  0.9113967 0.65525798   1.2445909
estimate82             HF_5k     LR_close  1.0590657 0.69396235   1.5555931
estimate83             MI_5k     EAR_open  0.9671331 0.37715105   1.9970357
estimate84             MI_5k    EAR_close  1.0573853 0.49908585   1.9485227
estimate85             MI_5k     ESR_open  0.7671672 0.34441944   1.4580429
estimate86             MI_5k    ESR_close  1.1755562 0.73269653   1.7913576
estimate87             MI_5k     ESR_clop  0.5348305 0.02322268   2.3328459
estimate88             MI_5k      LR_open  0.9755073 0.71534437   1.3097490
estimate89             MI_5k     LR_close  1.0979670 0.73481478   1.5852845
estimate90            DCM_5k    EAR_close  0.9944284 0.04196701   4.6787397
estimate91            DCM_5k    ESR_close  1.2594926 0.28754449   3.6410967
estimate92            DCM_5k      LR_open  1.1967993 0.52025836   2.5139808
estimate93            DCM_5k     LR_close  1.1020420 0.31541258   2.8840692
estimate94  base eQTL_mat_5k     EAR_open  0.8719167 0.41369183   1.5938658
estimate95  base eQTL_mat_5k    EAR_close  0.6404498 0.30394808   1.1704294
estimate96  base eQTL_mat_5k     ESR_open  1.0931019 0.66272787   1.6915847
estimate97  base eQTL_mat_5k    ESR_close  0.8408821 0.54877657   1.2315398
estimate98  base eQTL_mat_5k     ESR_opcl  3.4986583 0.15104869  15.4789760
estimate99  base eQTL_mat_5k     ESR_clop  0.8946334 0.21478798   2.3386573
estimate100 base eQTL_mat_5k      LR_open  0.6224970 0.46583970   0.8175706
estimate101 base eQTL_mat_5k     LR_close  0.8576530 0.60658345   1.1795079
estimate102   DOXres eQTL_5k     EAR_open  1.7987974 0.94579839   3.0885915
estimate103   DOXres eQTL_5k    EAR_close  0.5596604 0.19662812   1.2222849
estimate104   DOXres eQTL_5k     ESR_open  1.6084490 0.95508375   2.5377288
estimate105   DOXres eQTL_5k    ESR_close  0.8057855 0.46350233   1.3001569
estimate106   DOXres eQTL_5k     ESR_clop  1.3890297 0.33261110   3.6493344
estimate107   DOXres eQTL_5k      LR_open  0.9010659 0.66053427   1.2091203
estimate108   DOXres eQTL_5k     LR_close  0.7671085 0.48365780   1.1579808
                 P_Value
estimate    8.917800e-01
estimate1   1.864079e-01
estimate2   2.686159e-01
estimate3   4.599237e-01
estimate4   5.168269e-02
estimate5   5.201559e-01
estimate6   2.221480e-01
estimate7   7.633797e-01
estimate8   8.534133e-01
estimate9   7.703155e-02
estimate10  2.902451e-05
estimate11  2.819445e-01
estimate12  9.523435e-01
estimate13  2.177554e-01
estimate14  6.604515e-01
estimate15  2.110170e-01
estimate16  8.834695e-01
estimate17  7.585555e-01
estimate18  5.570187e-01
estimate19  8.917800e-01
estimate20  1.864079e-01
estimate21  2.686159e-01
estimate22  4.599237e-01
estimate23  5.168269e-02
estimate24  3.717893e-01
estimate25  2.221480e-01
estimate26  3.174033e-01
estimate27  6.347751e-01
estimate28  9.394064e-01
estimate29  5.427686e-02
estimate30  3.113879e-02
estimate31  3.670397e-01
estimate32  7.674148e-01
estimate33  4.242903e-01
estimate34  4.103257e-01
estimate35  1.426708e-01
estimate36  9.399923e-01
estimate37  2.053558e-01
estimate38  1.281610e-01
estimate39  6.997918e-01
estimate40  5.989453e-01
estimate41  9.820757e-01
estimate42  5.891424e-01
estimate43  7.920398e-01
estimate44  8.237618e-01
estimate45  1.200881e-01
estimate46  9.305937e-01
estimate47  7.785191e-01
estimate48  3.044845e-02
estimate49  8.012519e-01
estimate50  9.940507e-01
estimate51  5.185386e-02
estimate52  4.326738e-02
estimate53  1.153748e-01
estimate54  3.613444e-01
estimate55  5.417260e-01
estimate56  5.682228e-02
estimate57  6.469864e-03
estimate58  5.686032e-01
estimate59  2.948940e-01
estimate60  6.247672e-02
estimate61  7.259611e-01
estimate62  9.301457e-01
estimate63  7.320391e-01
estimate64  4.793414e-01
estimate65  6.947957e-01
estimate66  4.421699e-02
estimate67  5.458435e-01
estimate68  1.840887e-01
estimate69  9.670983e-01
estimate70  8.189073e-01
estimate71  3.077891e-02
estimate72  7.951983e-01
estimate73  8.364856e-01
estimate74  3.688376e-02
estimate75  4.089601e-02
estimate76  2.255141e-01
estimate77  4.661398e-01
estimate78  1.541941e-02
estimate79  5.454072e-01
estimate80  9.981355e-01
estimate81  5.594051e-01
estimate82  7.975467e-01
estimate83  8.867251e-01
estimate84  9.099103e-01
estimate85  4.304148e-01
estimate86  4.928274e-01
estimate87  4.371024e-01
estimate88  8.616306e-01
estimate89  6.479391e-01
estimate90  8.947473e-01
estimate91  7.615178e-01
estimate92  6.674923e-01
estimate93  9.048066e-01
estimate94  6.482080e-01
estimate95  1.680346e-01
estimate96  7.328518e-01
estimate97  3.820385e-01
estimate98  2.422825e-01
estimate99  7.796446e-01
estimate100 7.814724e-04
estimate101 3.520857e-01
estimate102 5.102384e-02
estimate103 1.708833e-01
estimate104 5.669934e-02
estimate105 3.866465e-01
estimate106 6.324246e-01
estimate107 4.891311e-01
estimate108 2.186008e-01

Odd ratio results and significance values of SNP enrichment compared to No response group

	Matrix_Name	Row_Compared	Odds_Ratio	Lower_CI	Upper_CI	P_Value
estimate	SNP	EAR_open	1.0858175	0.4228095	2.2472654	0.8917800
estimate1	SNP	EAR_close	0.5384223	0.1627268	1.2723227	0.1864079
estimate2	SNP	ESR_open	0.6499263	0.2531521	1.3445354	0.2686159
estimate3	SNP	ESR_close	1.2004451	0.7295655	1.8665169	0.4599237
estimate4	SNP	ESR_opcl	6.4848295	0.2793246	28.8566752	0.0516827
estimate5	SNP	LR_open	0.8999029	0.6401829	1.2401964	0.5201559
estimate6	SNP	LR_close	1.2723270	0.8537605	1.8361786	0.2221480
estimate7	ARR	EAR_open	1.3345765	0.2024828	4.3172023	0.7633797
estimate8	ARR	ESR_open	1.1714557	0.2744963	3.2121530	0.8534133
estimate9	ARR	ESR_close	1.9168451	0.8703641	3.7521490	0.0770315
estimate10	ARR	ESR_opcl	22.8116771	0.9703108	104.9295652	0.0000290
estimate11	ARR	LR_open	0.6960991	0.3288816	1.3294337	0.2819445
estimate12	ARR	LR_close	0.9950238	0.4058460	2.0751544	0.9523435
estimate13	CAD	EAR_open	1.8065179	0.6265178	4.0348451	0.2177554
estimate14	CAD	EAR_close	0.8120546	0.1927582	2.1708829	0.6604515
estimate15	CAD	ESR_open	0.4514148	0.0692247	1.4264815	0.2110170
estimate16	CAD	ESR_close	0.9643694	0.4263028	1.8782082	0.8834695
estimate17	CAD	LR_open	0.9351682	0.5787261	1.4554923	0.7585555
estimate18	CAD	LR_close	1.1903986	0.6571609	2.0093777	0.5570187
estimate19	HD	EAR_open	1.0858175	0.4228095	2.2472654	0.8917800
estimate20	HD	EAR_close	0.5384223	0.1627268	1.2723227	0.1864079
estimate21	HD	ESR_open	0.6499263	0.2531521	1.3445354	0.2686159
estimate22	HD	ESR_close	1.2004451	0.7295655	1.8665169	0.4599237
estimate23	HD	ESR_opcl	6.4848295	0.2793246	28.8566752	0.0516827
estimate24	HD	LR_open	0.8608660	0.6085135	1.1925075	0.3717893
estimate25	HD	LR_close	1.2723270	0.8537605	1.8361786	0.2221480
estimate26	HF	EAR_open	3.0845778	0.1248650	16.3071632	0.3174033
estimate27	HF	ESR_open	1.8475247	0.0748057	9.7600095	0.6347751
estimate28	HF	ESR_close	1.0417712	0.0421974	5.5040897	0.9394064
estimate29	HF	LR_open	2.4301331	0.9144801	6.2401916	0.0542769
estimate30	HF	LR_close	3.1165208	0.9473474	8.9091125	0.0311388
estimate31	MI	EAR_open	2.8081156	0.1144156	14.5693377	0.3670397
estimate32	MI	LR_open	0.8561585	0.1848515	2.7870652	0.7674148
estimate33	MI	LR_close	1.7363959	0.3748545	5.6531806	0.4242903
estimate34	DCM	LR_open	3.0251592	0.0775665	117.8480869	0.4103257
estimate35	DCM	LR_close	6.1349159	0.1572994	238.7133228	0.1426708
estimate36	base eQTL_mat	ESR_open	1.1328456	0.1701890	3.7456170	0.9399923
estimate37	base eQTL_mat	ESR_close	0.3395755	0.0144670	1.5610803	0.2053558
estimate38	base eQTL_mat	LR_open	0.5010065	0.1683084	1.1842194	0.1281610
estimate39	base eQTL_mat	LR_close	1.2132476	0.4507407	2.7197080	0.6997918
estimate40	DOXres eQTL	EAR_open	1.9391119	0.0806627	9.4878449	0.5989453
estimate41	DOXres eQTL	ESR_open	1.1614311	0.0483253	5.6816654	0.9820757
estimate42	DOXres eQTL	ESR_close	0.6548993	0.0272620	3.2035178	0.5891424
estimate43	DOXres eQTL	LR_open	1.1534228	0.4073388	2.8300963	0.7920398
estimate44	DOXres eQTL	LR_close	1.1991412	0.2675417	3.6366874	0.8237618
estimate45	SNP_5k	EAR_open	1.2228044	0.9420945	1.5579753	0.1200881
estimate46	SNP_5k	EAR_close	0.9915919	0.7742594	1.2489294	0.9305937
estimate47	SNP_5k	ESR_open	1.0326840	0.8293690	1.2694475	0.7785191
estimate48	SNP_5k	ESR_close	1.1856789	1.0136193	1.3788786	0.0304485
estimate49	SNP_5k	ESR_opcl	1.2878538	0.1979221	4.0507406	0.8012519
estimate50	SNP_5k	ESR_clop	1.0107270	0.6085697	1.5647201	0.9940507
estimate51	SNP_5k	LR_open	0.8987820	0.8060162	1.0002050	0.0518539
estimate52	SNP_5k	LR_close	1.1446745	1.0025301	1.3021244	0.0432674
estimate53	ARR_5k	EAR_open	1.4913979	0.8783880	2.3556255	0.1153748
estimate54	ARR_5k	EAR_close	0.7749385	0.4101332	1.3181080	0.3613444
estimate55	ARR_5k	ESR_open	1.1522139	0.7250581	1.7335698	0.5417260
estimate56	ARR_5k	ESR_close	1.3543152	0.9804572	1.8265556	0.0568223
estimate57	ARR_5k	ESR_opcl	6.0554552	0.9281344	19.1586168	0.0064699
estimate58	ARR_5k	ESR_clop	1.3339717	0.4699300	2.8998496	0.5686032
estimate59	ARR_5k	LR_open	0.8842799	0.6969957	1.1109223	0.2948940
estimate60	ARR_5k	LR_close	1.2892841	0.9800134	1.6702516	0.0624767
estimate61	CAD_5k	EAR_open	1.0720424	0.7316530	1.5096192	0.7259611
estimate62	CAD_5k	EAR_close	0.9896163	0.7046406	1.3471115	0.9301457
estimate63	CAD_5k	ESR_open	1.0541263	0.7832921	1.3857623	0.7320391
estimate64	CAD_5k	ESR_close	1.0826910	0.8669335	1.3359510	0.4793414
estimate65	CAD_5k	ESR_clop	1.1435750	0.5888688	1.9758533	0.6947957
estimate66	CAD_5k	LR_open	0.8593070	0.7392351	0.9948331	0.0442170
estimate67	CAD_5k	LR_close	1.0588231	0.8788997	1.2657602	0.5458435
estimate68	HD_5k	EAR_open	1.1911611	0.9139676	1.5229608	0.1840887
estimate69	HD_5k	EAR_close	0.9971447	0.7785682	1.2559217	0.9670983
estimate70	HD_5k	ESR_open	1.0270004	0.8238267	1.2637638	0.8189073
estimate71	HD_5k	ESR_close	1.1858145	1.0133069	1.3795890	0.0307789
estimate72	HD_5k	ESR_opcl	1.2950606	0.1990292	4.0734758	0.7951983
estimate73	HD_5k	ESR_clop	0.9595006	0.5687381	1.5024118	0.8364856
estimate74	HD_5k	LR_open	0.8911599	0.7986662	0.9923524	0.0368838
estimate75	HD_5k	LR_close	1.1467672	1.0040946	1.3048761	0.0408960
estimate76	HF_5k	EAR_open	1.5367619	0.7245080	2.8366399	0.2255141
estimate77	HF_5k	EAR_close	0.7586351	0.2956343	1.5679667	0.4661398
estimate78	HF_5k	ESR_open	1.8257607	1.0814250	2.8905697	0.0154194
estimate79	HF_5k	ESR_close	0.8579788	0.4833336	1.4071558	0.5454072
estimate80	HF_5k	ESR_clop	1.0749307	0.1659014	3.3498648	0.9981355
estimate81	HF_5k	LR_open	0.9113967	0.6552580	1.2445909	0.5594051
estimate82	HF_5k	LR_close	1.0590657	0.6939624	1.5555931	0.7975467
estimate83	MI_5k	EAR_open	0.9671331	0.3771510	1.9970357	0.8867251
estimate84	MI_5k	EAR_close	1.0573853	0.4990858	1.9485227	0.9099103
estimate85	MI_5k	ESR_open	0.7671672	0.3444194	1.4580429	0.4304148
estimate86	MI_5k	ESR_close	1.1755562	0.7326965	1.7913576	0.4928274
estimate87	MI_5k	ESR_clop	0.5348305	0.0232227	2.3328459	0.4371024
estimate88	MI_5k	LR_open	0.9755073	0.7153444	1.3097490	0.8616306
estimate89	MI_5k	LR_close	1.0979670	0.7348148	1.5852845	0.6479391
estimate90	DCM_5k	EAR_close	0.9944284	0.0419670	4.6787397	0.8947473
estimate91	DCM_5k	ESR_close	1.2594926	0.2875445	3.6410967	0.7615178
estimate92	DCM_5k	LR_open	1.1967993	0.5202584	2.5139808	0.6674923
estimate93	DCM_5k	LR_close	1.1020420	0.3154126	2.8840692	0.9048066
estimate94	base eQTL_mat_5k	EAR_open	0.8719167	0.4136918	1.5938658	0.6482080
estimate95	base eQTL_mat_5k	EAR_close	0.6404498	0.3039481	1.1704294	0.1680346
estimate96	base eQTL_mat_5k	ESR_open	1.0931019	0.6627279	1.6915847	0.7328518
estimate97	base eQTL_mat_5k	ESR_close	0.8408821	0.5487766	1.2315398	0.3820385
estimate98	base eQTL_mat_5k	ESR_opcl	3.4986583	0.1510487	15.4789760	0.2422825
estimate99	base eQTL_mat_5k	ESR_clop	0.8946334	0.2147880	2.3386573	0.7796446
estimate100	base eQTL_mat_5k	LR_open	0.6224970	0.4658397	0.8175706	0.0007815
estimate101	base eQTL_mat_5k	LR_close	0.8576530	0.6065834	1.1795079	0.3520857
estimate102	DOXres eQTL_5k	EAR_open	1.7987974	0.9457984	3.0885915	0.0510238
estimate103	DOXres eQTL_5k	EAR_close	0.5596604	0.1966281	1.2222849	0.1708833
estimate104	DOXres eQTL_5k	ESR_open	1.6084490	0.9550837	2.5377288	0.0566993
estimate105	DOXres eQTL_5k	ESR_close	0.8057855	0.4635023	1.3001569	0.3866465
estimate106	DOXres eQTL_5k	ESR_clop	1.3890297	0.3326111	3.6493344	0.6324246
estimate107	DOXres eQTL_5k	LR_open	0.9010659	0.6605343	1.2091203	0.4891311
estimate108	DOXres eQTL_5k	LR_close	0.7671085	0.4836578	1.1579808	0.2186008

col_fun_SNP = colorRamp2(c(0,1,1.5,5), c("blueviolet","white","lightgreen","green3" ))
sig_mat_SNP <- results_SNP_or %>% 
  as.data.frame() %>% 
  dplyr::select( Matrix_Name,Row_Compared,P_Value) %>% 
  pivot_wider(., id_cols = Matrix_Name, names_from = Row_Compared, values_from = P_Value) %>% 
  column_to_rownames("Matrix_Name") %>% 
  as.matrix() 


results_SNP_or %>% 
  as.data.frame() %>% 
  dplyr::select( Matrix_Name,Row_Compared,Odds_Ratio) %>% 
  pivot_wider(., id_cols = Matrix_Name, names_from = Row_Compared, values_from = Odds_Ratio) %>% 
  column_to_rownames("Matrix_Name") %>% 
  as.matrix() %>% 
  ComplexHeatmap::Heatmap(. ,col = col_fun_SNP, 
                          cluster_rows=FALSE, 
                          cluster_columns=FALSE, 
                          column_names_side = "top", 
                          column_names_rot = 45,
                          na_col = "grey60",
                          cell_fun = function(j, i, x, y, width, height, fill) {if (!is.na(sig_mat_SNP[i, j]) && sig_mat_SNP[i, j] < 0.05)
            grid.text("*", x, y, gp = gpar(fontsize = 20))})

Past versions of "SNP Oddsratio-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11

Peak annotation file

TE odds ratio matrix

## full peak set as all peaks
# subsetall_df
### makeing of nine set
Nine_te_df <- Eight_group_TE %>% 
  mutate(mrc=if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl",                 if_else(Peakid %in% ESR_D$Peakid,"ESR_clop",mrc)))
TE_mat<- Nine_te_df %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
 dplyr::filter(mrc != "not_mrc") %>% 
  group_by(TEstatus, mrc) %>% 
  tally %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  pivot_wider(id_cols = mrc, names_from = TEstatus,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  as.matrix(.)
  
# saveRDS(Nine_te_df,"data/Final_four_data/Nine_group_TE_df.RDS")

### makeing of nine set
Nine_class_status_df <-
Class_status_df %>% 
  mutate(mrc=if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl",                 if_else(Peakid %in% ESR_D$Peakid,"ESR_clop",mrc)))

Sine_mat<- Nine_class_status_df %>% 
 dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(Sine_status, mrc) %>% 
  tally %>% 
  
  pivot_wider(id_cols = mrc, names_from = Sine_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit(.) %>% 
  as.matrix(.)

Line_mat<- Nine_class_status_df %>% 
 dplyr::filter(mrc != "not_mrc") %>% 
  group_by(Line_status, mrc) %>% 
  tally %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  pivot_wider(id_cols = mrc, names_from = Line_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit(.) %>% 
  as.matrix(.)

LTR_mat<- Nine_class_status_df %>% 
 dplyr::filter(mrc != "not_mrc") %>% 
  group_by(LTR_status, mrc) %>% 
  tally %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  pivot_wider(id_cols = mrc, names_from = LTR_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit(.) %>% 
  as.matrix(.)

Retro_mat<- Nine_class_status_df %>% 
 dplyr::filter(mrc != "not_mrc") %>% 
  group_by(Retro_status, mrc) %>% 
  tally %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  pivot_wider(id_cols = mrc, names_from = Retro_status,values_from = n) %>% 
  column_to_rownames("mrc") %>%
  na.omit(.) %>% 
  as.matrix(.)

DNA_mat<- Nine_class_status_df %>% 
 dplyr::filter(mrc != "not_mrc") %>% 
  group_by(DNA_status, mrc) %>% 
  tally %>% 
  mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  pivot_wider(id_cols = mrc, names_from = DNA_status,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit(.) %>% 
  as.matrix(.)


CUG_mat <- CUG_mrc_nine_list %>% 
  distinct(Peakid,.keep_all = TRUE) %>%
  dplyr::filter(mrc != "not_mrc") %>% 
  mutate(mrc=if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl",                 if_else(Peakid %in% ESR_D$Peakid,"ESR_clop",mrc))) %>% 
    mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>% 
  group_by(cugstatus, mrc) %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = cugstatus,values_from = n) %>% 
  column_to_rownames("mrc") %>% 
  na.omit() %>% 
  as.matrix(.)

TSS_mat <-
Col_TSS_data_gr %>% 
  as.data.frame() %>% 
  dplyr::select(Peakid,dist_to_NG) %>% 
  mutate(TSS_status= if_else(dist_to_NG <100& dist_to_NG>-100,"TSS_peak","not_TSS_peak")) %>% 
   mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
                      if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
                              if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
                                      if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
                                              if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl",
                                                      if_else(Peakid %in% LR_open$Peakid,"LR_open",
                                                                      if_else(Peakid %in% LR_close$Peakid,"LR_close",
                                                                              if_else(Peakid %in% NR_df$Peakid,"NR",if_else(Peakid %in% ESR_D,"ESR_clop","not_mrc"))))))))) ) %>% 
  group_by(TSS_status, mrc) %>% 
  dplyr::filter(mrc !="not_mrc") %>% 
  tally  %>% 
  pivot_wider(id_cols = mrc, names_from = TSS_status,values_from = n) %>% 
  column_to_rownames("mrc") %>%
  na.omit(.) %>% 
  as.matrix(.)

chi square results

matrix_list <- list("TE"=TE_mat, "Sines"=Sine_mat, "Lines"=Line_mat,"DNA"= DNA_mat,"Retro"= Retro_mat,"LTR"= LTR_mat,"CGI"=CUG_mat,"TSS"=TSS_mat)
results <- data.frame(Matrix_Name = character(),
                      Row_Compared = character(),
                      Chi_Square_Statistic = numeric(),
                      P_Value = numeric(),
                      stringsAsFactors = FALSE)
names_list <- names(matrix_list)
# Loop through each matrix in the list
for (matrix_name in names_list) {
  current_matrix <- matrix_list[[matrix_name]]
  n_rows <- nrow(current_matrix)
  
  # Print matrix details for debugging
  cat("Processing Matrix:", matrix_name, "\n")
  print(current_matrix)
  
  # Loop through each row of the current matrix (except the last row)
  for (i in 1:(n_rows - 1)) {
    # Print row details for debugging
    cat("Comparing row", i, "with last row:\n")
    print(current_matrix[i, ])
    print(current_matrix[n_rows, ])
    
    # Perform chi-square test between row i and the last row
    test_result <- tryCatch({
      chisq.test(rbind(current_matrix[i, ], current_matrix[n_rows, ]))
    }, error = function(e) {
      cat("Error in chi-square test:", e$message, "\n")
      return(NULL)
    })
    
    # Only store the result if test_result is valid (i.e., not NULL)
    if (!is.null(test_result)) {
      results <- rbind(results, data.frame(Matrix_Name = matrix_name,
                                           Row_Compared = rownames(current_matrix)[i],
                                           Chi_Square_Statistic = test_result$statistic,
                                           P_Value = test_result$p.value))
    }
  }
}

Processing Matrix: TE 
          TE_peak not_TE_peak
EAR_open     3736        1104
EAR_close    4436        1492
ESR_open     6092        1753
ESR_close    9352        3415
ESR_opcl      107          31
ESR_clop     1208         326
LR_open     34312        8465
LR_close    14908        4856
NR          98024       28767
Comparing row 1 with last row:
    TE_peak not_TE_peak 
       3736        1104 
    TE_peak not_TE_peak 
      98024       28767 
Comparing row 2 with last row:
    TE_peak not_TE_peak 
       4436        1492 
    TE_peak not_TE_peak 
      98024       28767 
Comparing row 3 with last row:
    TE_peak not_TE_peak 
       6092        1753 
    TE_peak not_TE_peak 
      98024       28767 
Comparing row 4 with last row:
    TE_peak not_TE_peak 
       9352        3415 
    TE_peak not_TE_peak 
      98024       28767 
Comparing row 5 with last row:
    TE_peak not_TE_peak 
        107          31 
    TE_peak not_TE_peak 
      98024       28767 
Comparing row 6 with last row:
    TE_peak not_TE_peak 
       1208         326 
    TE_peak not_TE_peak 
      98024       28767 
Comparing row 7 with last row:
    TE_peak not_TE_peak 
      34312        8465 
    TE_peak not_TE_peak 
      98024       28767 
Comparing row 8 with last row:
    TE_peak not_TE_peak 
      14908        4856 
    TE_peak not_TE_peak 
      98024       28767 
Processing Matrix: Sines 
          sine_peak not_sine
EAR_open       1003     3837
EAR_close      1545     4383
ESR_open       1753     6092
ESR_close      3010     9757
ESR_opcl         30      108
ESR_clop        458     1076
LR_open       10996    31781
LR_close       4367    15397
NR            28532    98259
Comparing row 1 with last row:
sine_peak  not_sine 
     1003      3837 
sine_peak  not_sine 
    28532     98259 
Comparing row 2 with last row:
sine_peak  not_sine 
     1545      4383 
sine_peak  not_sine 
    28532     98259 
Comparing row 3 with last row:
sine_peak  not_sine 
     1753      6092 
sine_peak  not_sine 
    28532     98259 
Comparing row 4 with last row:
sine_peak  not_sine 
     3010      9757 
sine_peak  not_sine 
    28532     98259 
Comparing row 5 with last row:
sine_peak  not_sine 
       30       108 
sine_peak  not_sine 
    28532     98259 
Comparing row 6 with last row:
sine_peak  not_sine 
      458      1076 
sine_peak  not_sine 
    28532     98259 
Comparing row 7 with last row:
sine_peak  not_sine 
    10996     31781 
sine_peak  not_sine 
    28532     98259 
Comparing row 8 with last row:
sine_peak  not_sine 
     4367     15397 
sine_peak  not_sine 
    28532     98259 
Processing Matrix: Lines 
          line_peak not_line
EAR_close      1100     4828
EAR_open        739     4101
ESR_clop        290     1244
ESR_close      2233    10534
ESR_opcl         34      104
ESR_open       1403     6442
LR_close       3777    15987
LR_open        8569    34208
NR            21423   105368
Comparing row 1 with last row:
line_peak  not_line 
     1100      4828 
line_peak  not_line 
    21423    105368 
Comparing row 2 with last row:
line_peak  not_line 
      739      4101 
line_peak  not_line 
    21423    105368 
Comparing row 3 with last row:
line_peak  not_line 
      290      1244 
line_peak  not_line 
    21423    105368 
Comparing row 4 with last row:
line_peak  not_line 
     2233     10534 
line_peak  not_line 
    21423    105368 
Comparing row 5 with last row:
line_peak  not_line 
       34       104 
line_peak  not_line 
    21423    105368 
Comparing row 6 with last row:
line_peak  not_line 
     1403      6442 
line_peak  not_line 
    21423    105368 
Comparing row 7 with last row:
line_peak  not_line 
     3777     15987 
line_peak  not_line 
    21423    105368 
Comparing row 8 with last row:
line_peak  not_line 
     8569     34208 
line_peak  not_line 
    21423    105368 
Processing Matrix: DNA 
          DNA_peak not_DNA
EAR_close      408    5520
EAR_open       301    4539
ESR_clop       128    1406
ESR_close      854   11913
ESR_opcl         8     130
ESR_open       546    7299
LR_close      1522   18242
LR_open       3809   38968
NR            9040  117751
Comparing row 1 with last row:
DNA_peak  not_DNA 
     408     5520 
DNA_peak  not_DNA 
    9040   117751 
Comparing row 2 with last row:
DNA_peak  not_DNA 
     301     4539 
DNA_peak  not_DNA 
    9040   117751 
Comparing row 3 with last row:
DNA_peak  not_DNA 
     128     1406 
DNA_peak  not_DNA 
    9040   117751 
Comparing row 4 with last row:
DNA_peak  not_DNA 
     854    11913 
DNA_peak  not_DNA 
    9040   117751 
Comparing row 5 with last row:
DNA_peak  not_DNA 
       8      130 
DNA_peak  not_DNA 
    9040   117751 
Comparing row 6 with last row:
DNA_peak  not_DNA 
     546     7299 
DNA_peak  not_DNA 
    9040   117751 
Comparing row 7 with last row:
DNA_peak  not_DNA 
    1522    18242 
DNA_peak  not_DNA 
    9040   117751 
Comparing row 8 with last row:
DNA_peak  not_DNA 
    3809    38968 
DNA_peak  not_DNA 
    9040   117751 
Processing Matrix: Retro 
          Retro_peak not_Retro
EAR_close          7      5921
EAR_open          22      4818
ESR_clop           2      1532
ESR_close         11     12756
ESR_open          41      7804
LR_close          18     19746
LR_open           38     42739
NR               148    126643
Comparing row 1 with last row:
Retro_peak  not_Retro 
         7       5921 
Retro_peak  not_Retro 
       148     126643 
Comparing row 2 with last row:
Retro_peak  not_Retro 
        22       4818 
Retro_peak  not_Retro 
       148     126643 
Comparing row 3 with last row:
Retro_peak  not_Retro 
         2       1532 
Retro_peak  not_Retro 
       148     126643 

Comparing row 4 with last row:
Retro_peak  not_Retro 
        11      12756 
Retro_peak  not_Retro 
       148     126643 
Comparing row 5 with last row:
Retro_peak  not_Retro 
        41       7804 
Retro_peak  not_Retro 
       148     126643 
Comparing row 6 with last row:
Retro_peak  not_Retro 
        18      19746 
Retro_peak  not_Retro 
       148     126643 
Comparing row 7 with last row:
Retro_peak  not_Retro 
        38      42739 
Retro_peak  not_Retro 
       148     126643 
Processing Matrix: LTR 
          LTR_peak not_LTR
EAR_close      787    5141
EAR_open       427    4413
ESR_clop       225    1309
ESR_close     1508   11259
ESR_opcl        20     118
ESR_open       776    7069
LR_close      2684   17080
LR_open       6116   36661
NR           14757  112034
Comparing row 1 with last row:
LTR_peak  not_LTR 
     787     5141 
LTR_peak  not_LTR 
   14757   112034 
Comparing row 2 with last row:
LTR_peak  not_LTR 
     427     4413 
LTR_peak  not_LTR 
   14757   112034 
Comparing row 3 with last row:
LTR_peak  not_LTR 
     225     1309 
LTR_peak  not_LTR 
   14757   112034 
Comparing row 4 with last row:
LTR_peak  not_LTR 
    1508    11259 
LTR_peak  not_LTR 
   14757   112034 
Comparing row 5 with last row:
LTR_peak  not_LTR 
      20      118 
LTR_peak  not_LTR 
   14757   112034 
Comparing row 6 with last row:
LTR_peak  not_LTR 
     776     7069 
LTR_peak  not_LTR 
   14757   112034 
Comparing row 7 with last row:
LTR_peak  not_LTR 
    2684    17080 
LTR_peak  not_LTR 
   14757   112034 
Comparing row 8 with last row:
LTR_peak  not_LTR 
    6116    36661 
LTR_peak  not_LTR 
   14757   112034 
Processing Matrix: CGI 
          CGi_peak not_CGi_peak
EAR_open        81         3077
EAR_close       17         4279
ESR_open       139         5133
ESR_close       71         9278
LR_open        307        28230
LR_close       102        13970
NR            1265        85063
Comparing row 1 with last row:
    CGi_peak not_CGi_peak 
          81         3077 
    CGi_peak not_CGi_peak 
        1265        85063 
Comparing row 2 with last row:
    CGi_peak not_CGi_peak 
          17         4279 
    CGi_peak not_CGi_peak 
        1265        85063 
Comparing row 3 with last row:
    CGi_peak not_CGi_peak 
         139         5133 
    CGi_peak not_CGi_peak 
        1265        85063 
Comparing row 4 with last row:
    CGi_peak not_CGi_peak 
          71         9278 
    CGi_peak not_CGi_peak 
        1265        85063 
Comparing row 5 with last row:
    CGi_peak not_CGi_peak 
         307        28230 
    CGi_peak not_CGi_peak 
        1265        85063 
Comparing row 6 with last row:
    CGi_peak not_CGi_peak 
         102        13970 
    CGi_peak not_CGi_peak 
        1265        85063 
Processing Matrix: TSS 
          TSS_peak not_TSS_peak
EAR_close      148         4148
EAR_open       429         2729
ESR_close      417         8932
ESR_opcl         2           97
ESR_open       198         5074
LR_close       799        13273
LR_open       1098        27439
NR            7610        78718
Comparing row 1 with last row:
    TSS_peak not_TSS_peak 
         148         4148 
    TSS_peak not_TSS_peak 
        7610        78718 
Comparing row 2 with last row:
    TSS_peak not_TSS_peak 
         429         2729 
    TSS_peak not_TSS_peak 
        7610        78718 
Comparing row 3 with last row:
    TSS_peak not_TSS_peak 
         417         8932 
    TSS_peak not_TSS_peak 
        7610        78718 
Comparing row 4 with last row:
    TSS_peak not_TSS_peak 
           2           97 
    TSS_peak not_TSS_peak 
        7610        78718 
Comparing row 5 with last row:
    TSS_peak not_TSS_peak 
         198         5074 
    TSS_peak not_TSS_peak 
        7610        78718 
Comparing row 6 with last row:
    TSS_peak not_TSS_peak 
         799        13273 
    TSS_peak not_TSS_peak 
        7610        78718 
Comparing row 7 with last row:
    TSS_peak not_TSS_peak 
        1098        27439 
    TSS_peak not_TSS_peak 
        7610        78718 

# Print the resulting dataframe
# saveRDS(results,"data/Final_four_data/chisquare_results_TE_df.RDS")
print(results) %>% 
   kable(., caption = " Chi squre results and significance values of TE enrichment compared to No response group") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) %>% 
  scroll_box(width = "100%", height = "400px")

            Matrix_Name Row_Compared Chi_Square_Statistic       P_Value
X-squared            TE     EAR_open         3.255012e-02  8.568256e-01
X-squared1           TE    EAR_close         1.965110e+01  9.294970e-06
X-squared2           TE     ESR_open         4.766672e-01  4.899358e-01
X-squared3           TE    ESR_close         1.075397e+02  3.390396e-25
X-squared4           TE     ESR_opcl         1.366893e-25  1.000000e+00
X-squared5           TE     ESR_clop         1.703952e+00  1.917720e-01
X-squared6           TE      LR_open         1.567943e+02  5.676780e-36
X-squared7           TE     LR_close         3.412907e+01  5.157487e-09
X-squared8        Sines     EAR_open         8.385977e+00  3.781268e-03
X-squared9        Sines    EAR_close         4.073898e+01  1.739814e-10
X-squared10       Sines     ESR_open         9.657475e-02  7.559794e-01
X-squared11       Sines    ESR_close         7.576128e+00  5.914635e-03
X-squared12       Sines     ESR_opcl         1.273197e-02  9.101606e-01
X-squared13       Sines     ESR_clop         4.644582e+01  9.418709e-12
X-squared14       Sines      LR_open         1.832910e+02  9.265952e-42
X-squared15       Sines     LR_close         1.607202e+00  2.048856e-01
X-squared16       Lines    EAR_close         1.095372e+01  9.341575e-04
X-squared17       Lines     EAR_open         8.705754e+00  3.172072e-03
X-squared18       Lines     ESR_clop         4.207890e+00  4.023635e-02
X-squared19       Lines    ESR_close         2.866069e+00  9.046560e-02
X-squared20       Lines     ESR_opcl         5.342899e+00  2.080684e-02
X-squared21       Lines     ESR_open         5.048981e+00  2.464042e-02
X-squared22       Lines     LR_close         5.872044e+01  1.817440e-14
X-squared23       Lines      LR_open         2.157756e+02  7.548848e-49
X-squared24         DNA    EAR_close         4.868862e-01  4.853196e-01
X-squared25         DNA     EAR_open         5.729269e+00  1.668443e-02
X-squared26         DNA     ESR_clop         3.188597e+00  7.415364e-02
X-squared27         DNA    ESR_close         3.353784e+00  6.705071e-02
X-squared28         DNA     ESR_opcl         1.959302e-01  6.580261e-01
X-squared29         DNA     ESR_open         2.976560e-01  5.853556e-01
X-squared30         DNA     LR_close         8.251911e+00  4.070912e-03
X-squared31         DNA      LR_open         1.435574e+02  4.439819e-33
X-squared32       Retro    EAR_close         2.269176e-24  1.000000e+00
X-squared33       Retro     EAR_open         3.867129e+01  5.015332e-10
X-squared34       Retro     ESR_clop         5.740842e-29  1.000000e+00
X-squared35       Retro    ESR_close         7.027035e-01  4.018768e-01
X-squared36       Retro     ESR_open         8.395750e+01  5.055255e-20
X-squared37       Retro     LR_close         7.807185e-01  3.769215e-01
X-squared38       Retro      LR_open         2.024021e+00  1.548287e-01
X-squared39         LTR    EAR_close         1.452134e+01  1.385811e-04
X-squared40         LTR     EAR_open         3.596589e+01  2.008021e-09
X-squared41         LTR     ESR_clop         1.319045e+01  2.813794e-04
X-squared42         LTR    ESR_close         3.200447e-01  5.715808e-01
X-squared43         LTR     ESR_opcl         8.316735e-01  3.617891e-01
X-squared44         LTR     ESR_open         2.192667e+01  2.832692e-06
X-squared45         LTR     LR_close         6.128351e+01  4.942022e-15
X-squared46         LTR      LR_open         2.091919e+02  2.061473e-47
X-squared47         CGI     EAR_open         2.412608e+01  9.022978e-07
X-squared48         CGI    EAR_close         3.280949e+01  1.016472e-08
X-squared49         CGI     ESR_open         4.438709e+01  2.694584e-11
X-squared50         CGI    ESR_close         3.001802e+01  4.280499e-08
X-squared51         CGI      LR_open         2.382286e+01  1.056207e-06
X-squared52         CGI     LR_close         4.885169e+01  2.760671e-12
X-squared53         TSS    EAR_close         1.500817e+02  1.663835e-34
X-squared54         TSS     EAR_open         8.417102e+01  4.537745e-20
X-squared55         TSS    ESR_close         2.075782e+02  4.637019e-47
X-squared56         TSS     ESR_opcl         4.870180e+00  2.732466e-02
X-squared57         TSS     ESR_open         1.624690e+02  3.267569e-37
X-squared58         TSS     LR_close         1.547789e+02  1.565006e-35
X-squared59         TSS      LR_open         7.546797e+02 3.853646e-166

Chi squre results and significance values of TE enrichment compared to No response group

	Matrix_Name	Row_Compared	Chi_Square_Statistic	P_Value
X-squared	TE	EAR_open	0.0325501	0.8568256
X-squared1	TE	EAR_close	19.6511019	0.0000093
X-squared2	TE	ESR_open	0.4766672	0.4899358
X-squared3	TE	ESR_close	107.5397339	0.0000000
X-squared4	TE	ESR_opcl	0.0000000	1.0000000
X-squared5	TE	ESR_clop	1.7039519	0.1917720
X-squared6	TE	LR_open	156.7942828	0.0000000
X-squared7	TE	LR_close	34.1290747	0.0000000
X-squared8	Sines	EAR_open	8.3859774	0.0037813
X-squared9	Sines	EAR_close	40.7389846	0.0000000
X-squared10	Sines	ESR_open	0.0965747	0.7559794
X-squared11	Sines	ESR_close	7.5761282	0.0059146
X-squared12	Sines	ESR_opcl	0.0127320	0.9101606
X-squared13	Sines	ESR_clop	46.4458194	0.0000000
X-squared14	Sines	LR_open	183.2910301	0.0000000
X-squared15	Sines	LR_close	1.6072016	0.2048856
X-squared16	Lines	EAR_close	10.9537226	0.0009342
X-squared17	Lines	EAR_open	8.7057537	0.0031721
X-squared18	Lines	ESR_clop	4.2078901	0.0402364
X-squared19	Lines	ESR_close	2.8660688	0.0904656
X-squared20	Lines	ESR_opcl	5.3428993	0.0208068
X-squared21	Lines	ESR_open	5.0489812	0.0246404
X-squared22	Lines	LR_close	58.7204361	0.0000000
X-squared23	Lines	LR_open	215.7755637	0.0000000
X-squared24	DNA	EAR_close	0.4868862	0.4853196
X-squared25	DNA	EAR_open	5.7292691	0.0166844
X-squared26	DNA	ESR_clop	3.1885968	0.0741536
X-squared27	DNA	ESR_close	3.3537841	0.0670507
X-squared28	DNA	ESR_opcl	0.1959302	0.6580261
X-squared29	DNA	ESR_open	0.2976560	0.5853556
X-squared30	DNA	LR_close	8.2519112	0.0040709
X-squared31	DNA	LR_open	143.5573743	0.0000000
X-squared32	Retro	EAR_close	0.0000000	1.0000000
X-squared33	Retro	EAR_open	38.6712858	0.0000000
X-squared34	Retro	ESR_clop	0.0000000	1.0000000
X-squared35	Retro	ESR_close	0.7027035	0.4018768
X-squared36	Retro	ESR_open	83.9575031	0.0000000
X-squared37	Retro	LR_close	0.7807185	0.3769215
X-squared38	Retro	LR_open	2.0240211	0.1548287
X-squared39	LTR	EAR_close	14.5213360	0.0001386
X-squared40	LTR	EAR_open	35.9658900	0.0000000
X-squared41	LTR	ESR_clop	13.1904496	0.0002814
X-squared42	LTR	ESR_close	0.3200447	0.5715808
X-squared43	LTR	ESR_opcl	0.8316735	0.3617891
X-squared44	LTR	ESR_open	21.9266729	0.0000028
X-squared45	LTR	LR_close	61.2835101	0.0000000
X-squared46	LTR	LR_open	209.1918737	0.0000000
X-squared47	CGI	EAR_open	24.1260844	0.0000009
X-squared48	CGI	EAR_close	32.8094943	0.0000000
X-squared49	CGI	ESR_open	44.3870882	0.0000000
X-squared50	CGI	ESR_close	30.0180203	0.0000000
X-squared51	CGI	LR_open	23.8228586	0.0000011
X-squared52	CGI	LR_close	48.8516928	0.0000000
X-squared53	TSS	EAR_close	150.0816626	0.0000000
X-squared54	TSS	EAR_open	84.1710162	0.0000000
X-squared55	TSS	ESR_close	207.5782426	0.0000000
X-squared56	TSS	ESR_opcl	4.8701795	0.0273247
X-squared57	TSS	ESR_open	162.4690080	0.0000000
X-squared58	TSS	LR_close	154.7788771	0.0000000
X-squared59	TSS	LR_open	754.6796937	0.0000000

odds ratio results

results_or <- data.frame(Matrix_Name = character(),
                      Row_Compared = character(),
                      Odds_Ratio = numeric(),
                      Lower_CI = numeric(),
                      Upper_CI = numeric(),
                      P_Value = numeric(),
                      stringsAsFactors = FALSE)

# Loop through each matrix in the list
for (matrix_name in names(matrix_list)) {
  current_matrix <- matrix_list[[matrix_name]]
  n_rows <- nrow(current_matrix)
  
  # Loop through each row of the current matrix (except the last row)
  for (i in 1:(n_rows - 1)) {
    # Perform odds ratio test between row i and the last row using epitools
    test_result <- tryCatch({
      contingency_table <- rbind(current_matrix[i, ], current_matrix[n_rows, ])
      
      # Check if any row in the contingency table contains only zeros
      if (any(rowSums(contingency_table) == 0)) {
        stop("Contingency table contains empty rows.")
      }
      
      oddsratio_result <- oddsratio(contingency_table)
       # Ensure the oddsratio result has at least 2 rows
      if (nrow(oddsratio_result$measure) < 2) {
        stop("oddsratio result does not have enough data.")
      }
      
     list(oddsratio = oddsratio_result, p.value = oddsratio_result$p.value[2,"chi.square"])
      
    }, error = function(e) {
      cat("Error in odds ratio test for row", i, "in matrix", matrix_name, ":", e$message, "\n")
      return(NULL)
    })
    
    # Only store the result if test_result is valid (i.e., not NULL)
    if (!is.null(test_result)) {
      or_value <- test_result$oddsratio$measure[2, "estimate"]
      lower_ci <- test_result$oddsratio$measure[2, "lower"]
      upper_ci <- test_result$oddsratio$measure[2, "upper"]
      p_value <- test_result$oddsratio$p.value[2,"chi.square"]
      
      # Check if the values are numeric and valid (not NA)
      if (!is.na(or_value) && !is.na(lower_ci) && !is.na(upper_ci) && !is.na(p_value)) {
        # Store the results in the dataframe
        results_or <- rbind(results_or, data.frame(Matrix_Name = matrix_name,
                                             Row_Compared = rownames(current_matrix)[i],
                                             Odds_Ratio = or_value,
                                             Lower_CI = lower_ci,
                                             Upper_CI = upper_ci,
                                             P_Value = p_value))
      }
    }
  }
}

# saveRDS(results_or,"data/Final_four_data/OR_results_TE_df.RDS")
# results_or <- readRDS("data/Final_four_data/OR_results_TE_df.RDS") # Print the resulting dataframe

results_or <- results_or %>% 
  mutate(Matrix_Name=factor(Matrix_Name, levels=c("TE","Sines","Lines", "DNA","LTR","Retro","CGI","TSS"))) %>% 
    mutate(Row_Compared=factor(Row_Compared, levels = c("EAR_open","ESR_open", "LR_open","ESR_opcl", "EAR_close", "ESR_close", "LR_close", "ESR_clop"))) %>% 
  arrange(Matrix_Name,Row_Compared)  
print(results_or) %>% 
  kable(., caption = "Odd ratio results and significance values of TE enrichment compared to No response group") %>% 
  kable_paper("striped", full_width = TRUE) %>%
  kable_styling(full_width = FALSE, font_size = 14) %>% 
  scroll_box(width = "100%", height = "400px")

           Matrix_Name Row_Compared Odds_Ratio  Lower_CI  Upper_CI
estimate            TE     EAR_open  0.9930149 0.9276918 1.0637550
estimate2           TE     ESR_open  1.0198043 0.9657073 1.0774383
estimate6           TE      LR_open  1.1895330 1.1576918 1.2223494
estimate4           TE     ESR_opcl  1.0091461 0.6849717 1.5314210
estimate1           TE    EAR_close  0.8724990 0.8217932 0.9267896
estimate3           TE    ESR_close  0.8036436 0.7711656 0.8376684
estimate7           TE     LR_close  0.9009153 0.8700517 0.9330668
estimate5           TE     ESR_clop  1.0870568 0.9625132 1.2311723
estimate8        Sines     EAR_open  0.9003151 0.8384455 0.9659169
estimate10       Sines     ESR_open  0.9910389 0.9380274 1.0465405
estimate14       Sines      LR_open  1.1915424 1.1616378 1.2221370
estimate12       Sines     ESR_opcl  0.9604240 0.6293681 1.4206259
estimate9        Sines    EAR_close  1.2140218 1.1436499 1.2880365
estimate11       Sines    ESR_close  1.0624427 1.0176585 1.1088832
estimate15       Sines     LR_close  0.9767914 0.9420791 1.0125838
estimate13       Sines     ESR_clop  1.4661622 1.3121527 1.6356040
estimate17       Lines     EAR_open  0.8864872 0.8180134 0.9593484
estimate21       Lines     ESR_open  1.0713070 1.0089789 1.1366501
estimate23       Lines      LR_open  1.2320451 1.1981776 1.2668316
estimate20       Lines     ESR_opcl  1.6132125 1.0788300 2.3514816
estimate16       Lines    EAR_close  1.1207354 1.0475169 1.1980391
estimate19       Lines    ESR_close  1.0426688 0.9936261 1.0936497
estimate22       Lines     LR_close  1.1620391 1.1181608 1.2074006
estimate18       Lines     ESR_clop  1.1470621 1.0068554 1.3024806
estimate25         DNA     EAR_open  0.8642179 0.7660552 0.9712230
estimate29         DNA     ESR_open  0.9746323 0.8902416 1.0648643
estimate31         DNA      LR_open  1.2732597 1.2237553 1.3244921
estimate28         DNA     ESR_opcl  0.8169463 0.3652356 1.5628711
estimate24         DNA    EAR_close  0.9631076 0.8677809 1.0659409
estimate27         DNA    ESR_close  0.9339086 0.8679018 1.0036802
estimate30         DNA     LR_close  1.0868636 1.0268235 1.1496416
estimate26         DNA     ESR_clop  1.1872063 0.9848197 1.4183896
estimate40         LTR     EAR_open  0.7348741 0.6634605 0.8117356
estimate44         LTR     ESR_open  0.8335422 0.7719410 0.8988335
estimate46         LTR      LR_open  1.2665403 1.2265514 1.3077553
estimate43         LTR     ESR_opcl  1.2955805 0.7818817 2.0337293
estimate39         LTR    EAR_close  1.1623912 1.0755693 1.2545921
estimate42         LTR    ESR_close  1.0169326 0.9608134 1.0756303
estimate45         LTR     LR_close  1.1930868 1.1413249 1.2467341
estimate41         LTR     ESR_clop  1.3057464 1.1295958 1.5022764
estimate33       Retro     EAR_open  3.9321127 2.4405460 6.0252674
estimate36       Retro     ESR_open  4.5085891 3.1471538 6.3127730
estimate38       Retro      LR_open  0.7633061 0.5267756 1.0783561
estimate32       Retro    EAR_close  1.0340804 0.4355106 2.0463892
estimate35       Retro    ESR_close  0.7481210 0.3804652 1.3164846
estimate37       Retro     LR_close  0.7863199 0.4649896 1.2476868
estimate34       Retro     ESR_clop  1.2027275 0.1855626 3.7511651
estimate47         CGI     EAR_open  1.7734414 1.4018570 2.2113095
estimate49         CGI     ESR_open  1.8228090 1.5201218 2.1684240
estimate51         CGI      LR_open  0.7315696 0.6442733 0.8280861
estimate48         CGI    EAR_close  0.2697156 0.1602209 0.4210667
estimate50         CGI    ESR_close  0.5156835 0.4020549 0.6503579
estimate52         CGI     LR_close  0.4917024 0.3991197 0.5988032
estimate54         TSS     EAR_open  1.6265744 1.4634153 1.8036286
estimate57         TSS     ESR_open  0.4039695 0.3487304 0.4651334
estimate59         TSS      LR_open  0.4140065 0.3878280 0.4414668
estimate56         TSS     ESR_opcl  0.2295193 0.0353005 0.7209507
estimate53         TSS    EAR_close  0.3694960 0.3117434 0.4343084
estimate55         TSS    ESR_close  0.4831114 0.4360727 0.5337066
estimate58         TSS     LR_close  0.6228241 0.5773269 0.6709731
                 P_Value
estimate    8.431233e-01
estimate2   4.812431e-01
estimate6   5.213551e-36
estimate4   9.497618e-01
estimate1   8.635414e-06
estimate3   3.020870e-25
estimate7   4.883218e-09
estimate5   1.815400e-01
estimate8   3.575062e-03
estimate10  7.454107e-01
estimate14  8.468238e-42
estimate12  8.299120e-01
estimate9   1.568282e-10
estimate11  5.717164e-03
estimate15  2.016309e-01
estimate13  7.603440e-12
estimate17  2.976821e-03
estimate21  2.366672e-02
estimate23  6.775038e-49
estimate20  1.530432e-02
estimate16  8.767903e-04
estimate19  8.813468e-02
estimate22  1.679414e-14
estimate18  3.701771e-02
estimate25  1.543072e-02
estimate29  5.698995e-01
estimate31  3.908336e-33
estimate28  5.430867e-01
estimate24  4.693046e-01
estimate27  6.439674e-02
estimate30  3.884398e-03
estimate26  6.642753e-02
estimate40  1.743304e-09
estimate44  2.591425e-06
estimate46  1.821622e-47
estimate43  2.961428e-01
estimate39  1.274425e-04
estimate42  5.617843e-01
estimate45  4.498738e-15
estimate41  2.407915e-04
estimate33  1.340329e-10
estimate36  1.183286e-20
estimate38  1.317748e-01
estimate32  9.761622e-01
estimate35  3.291164e-01
estimate37  3.186374e-01
estimate34  8.764030e-01
estimate47  6.156094e-07
estimate49  1.815962e-11
estimate51  9.095905e-07
estimate48  6.867152e-09
estimate50  3.289884e-08
estimate52  2.085836e-12
estimate54  3.380127e-20
estimate57  2.358360e-37
estimate59 2.702370e-166
estimate56  1.711323e-02
estimate53  1.178508e-34
estimate55  3.488987e-47
estimate58  1.274194e-35

Odd ratio results and significance values of TE enrichment compared to No response group

	Matrix_Name	Row_Compared	Odds_Ratio	Lower_CI	Upper_CI	P_Value
estimate	TE	EAR_open	0.9930149	0.9276918	1.0637550	0.8431233
estimate2	TE	ESR_open	1.0198043	0.9657073	1.0774383	0.4812431
estimate6	TE	LR_open	1.1895330	1.1576918	1.2223494	0.0000000
estimate4	TE	ESR_opcl	1.0091461	0.6849717	1.5314210	0.9497618
estimate1	TE	EAR_close	0.8724990	0.8217932	0.9267896	0.0000086
estimate3	TE	ESR_close	0.8036436	0.7711656	0.8376684	0.0000000
estimate7	TE	LR_close	0.9009153	0.8700517	0.9330668	0.0000000
estimate5	TE	ESR_clop	1.0870568	0.9625132	1.2311723	0.1815400
estimate8	Sines	EAR_open	0.9003151	0.8384455	0.9659169	0.0035751
estimate10	Sines	ESR_open	0.9910389	0.9380274	1.0465405	0.7454107
estimate14	Sines	LR_open	1.1915424	1.1616378	1.2221370	0.0000000
estimate12	Sines	ESR_opcl	0.9604240	0.6293681	1.4206259	0.8299120
estimate9	Sines	EAR_close	1.2140218	1.1436499	1.2880365	0.0000000
estimate11	Sines	ESR_close	1.0624427	1.0176585	1.1088832	0.0057172
estimate15	Sines	LR_close	0.9767914	0.9420791	1.0125838	0.2016309
estimate13	Sines	ESR_clop	1.4661622	1.3121527	1.6356040	0.0000000
estimate17	Lines	EAR_open	0.8864872	0.8180134	0.9593484	0.0029768
estimate21	Lines	ESR_open	1.0713070	1.0089789	1.1366501	0.0236667
estimate23	Lines	LR_open	1.2320451	1.1981776	1.2668316	0.0000000
estimate20	Lines	ESR_opcl	1.6132125	1.0788300	2.3514816	0.0153043
estimate16	Lines	EAR_close	1.1207354	1.0475169	1.1980391	0.0008768
estimate19	Lines	ESR_close	1.0426688	0.9936261	1.0936497	0.0881347
estimate22	Lines	LR_close	1.1620391	1.1181608	1.2074006	0.0000000
estimate18	Lines	ESR_clop	1.1470621	1.0068554	1.3024806	0.0370177
estimate25	DNA	EAR_open	0.8642179	0.7660552	0.9712230	0.0154307
estimate29	DNA	ESR_open	0.9746323	0.8902416	1.0648643	0.5698995
estimate31	DNA	LR_open	1.2732597	1.2237553	1.3244921	0.0000000
estimate28	DNA	ESR_opcl	0.8169463	0.3652356	1.5628711	0.5430867
estimate24	DNA	EAR_close	0.9631076	0.8677809	1.0659409	0.4693046
estimate27	DNA	ESR_close	0.9339086	0.8679018	1.0036802	0.0643967
estimate30	DNA	LR_close	1.0868636	1.0268235	1.1496416	0.0038844
estimate26	DNA	ESR_clop	1.1872063	0.9848197	1.4183896	0.0664275
estimate40	LTR	EAR_open	0.7348741	0.6634605	0.8117356	0.0000000
estimate44	LTR	ESR_open	0.8335422	0.7719410	0.8988335	0.0000026
estimate46	LTR	LR_open	1.2665403	1.2265514	1.3077553	0.0000000
estimate43	LTR	ESR_opcl	1.2955805	0.7818817	2.0337293	0.2961428
estimate39	LTR	EAR_close	1.1623912	1.0755693	1.2545921	0.0001274
estimate42	LTR	ESR_close	1.0169326	0.9608134	1.0756303	0.5617843
estimate45	LTR	LR_close	1.1930868	1.1413249	1.2467341	0.0000000
estimate41	LTR	ESR_clop	1.3057464	1.1295958	1.5022764	0.0002408
estimate33	Retro	EAR_open	3.9321127	2.4405460	6.0252674	0.0000000
estimate36	Retro	ESR_open	4.5085891	3.1471538	6.3127730	0.0000000
estimate38	Retro	LR_open	0.7633061	0.5267756	1.0783561	0.1317748
estimate32	Retro	EAR_close	1.0340804	0.4355106	2.0463892	0.9761622
estimate35	Retro	ESR_close	0.7481210	0.3804652	1.3164846	0.3291164
estimate37	Retro	LR_close	0.7863199	0.4649896	1.2476868	0.3186374
estimate34	Retro	ESR_clop	1.2027275	0.1855626	3.7511651	0.8764030
estimate47	CGI	EAR_open	1.7734414	1.4018570	2.2113095	0.0000006
estimate49	CGI	ESR_open	1.8228090	1.5201218	2.1684240	0.0000000
estimate51	CGI	LR_open	0.7315696	0.6442733	0.8280861	0.0000009
estimate48	CGI	EAR_close	0.2697156	0.1602209	0.4210667	0.0000000
estimate50	CGI	ESR_close	0.5156835	0.4020549	0.6503579	0.0000000
estimate52	CGI	LR_close	0.4917024	0.3991197	0.5988032	0.0000000
estimate54	TSS	EAR_open	1.6265744	1.4634153	1.8036286	0.0000000
estimate57	TSS	ESR_open	0.4039695	0.3487304	0.4651334	0.0000000
estimate59	TSS	LR_open	0.4140065	0.3878280	0.4414668	0.0000000
estimate56	TSS	ESR_opcl	0.2295193	0.0353005	0.7209507	0.0171132
estimate53	TSS	EAR_close	0.3694960	0.3117434	0.4343084	0.0000000
estimate55	TSS	ESR_close	0.4831114	0.4360727	0.5337066	0.0000000
estimate58	TSS	LR_close	0.6228241	0.5773269	0.6709731	0.0000000

# breaks <- seq(0, 5, length.out = 12)
# # Create a color palette with 12 colors from "purple3" to "green3", passing through "white"
# colors <- colorRampPalette(c("purple3", "white", "green3"))(12)
# 
# # Create the color function with 12 bins
# col_fun_OR <- colorRamp2(breaks, colors)

col_fun_OR = colorRamp2(c(0,1,1.5,3,4), c("#BC9BFF","white","lightgreen","green3","green3" ))
sig_mat_OR <- results_or %>% 
  as.data.frame() %>% 
  dplyr::select( Matrix_Name,Row_Compared,P_Value) %>% 
  pivot_wider(., id_cols = Matrix_Name, names_from = Row_Compared, values_from = P_Value) %>% 
  column_to_rownames("Matrix_Name") %>% 
  as.matrix() 


results_or %>% 
  as.data.frame() %>% 
  dplyr::select( Matrix_Name,Row_Compared,Odds_Ratio) %>% 
  pivot_wider(., id_cols = Matrix_Name, names_from = Row_Compared, values_from = Odds_Ratio) %>% 
  column_to_rownames("Matrix_Name") %>% 
  as.matrix() %>% 
  ComplexHeatmap::Heatmap(. ,col = col_fun_OR, 
                          cluster_rows=FALSE, 
                          cluster_columns=FALSE, 
                          column_names_side = "top", 
                          column_names_rot = 45,
                          # na_col = "black",
                          cell_fun = function(j, i, x, y, width, height, fill) {if (!is.na(sig_mat_OR[i, j]) && sig_mat_OR[i, j] < 0.05)
            grid.text("*", x, y, gp = gpar(fontsize = 20))})

Past versions of "odds ratio test-1.png"

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28
faf0654	reneeisnowhere	2024-10-11
d6fe7e3	reneeisnowhere	2024-10-07

data mining Renee corner

pay no attention to the output here

SVA dist from TSS

Peak_TE_overlapbreakdown %>%  mutate(mrc=if_else(
  Peakid %in% EAR_open$Peakid, "EAR_open",if_else(
    Peakid %in% EAR_close$Peakid, "EAR_close", if_else(
      Peakid %in% ESR_open$Peakid,"ESR_open", if_else(
        Peakid %in% ESR_close$Peakid,"ESR_close",
    if_else(
      Peakid %in% ESR_opcl$Peakid,"ESR_opcl",        if_else(
        Peakid %in% LR_open$Peakid,"LR_open",
           if_else(
             Peakid %in% LR_close$Peakid,"LR_close",if_else(
               Peakid %in% NR_df$Peakid,"NR",if_else(
                 Peakid %in% ESR_clop$Peakid,"ESR_clop","not_mrc")))))))))) %>%
  mutate(mrc=factor(mrc, levels = c("EAR_open",
                    "ESR_open", "LR_open", "ESR_opcl", "EAR_close","ESR_close", "LR_close","ESR_clop","NR","not_mrc"))) %>% 
  dplyr::filter(repClass=="Retroposon") %>% 
  dplyr::filter(dist_to_NG>-20000&dist_to_NG<20000) %>% 
  ggplot(., aes (x=dist_to_NG,y=mrc, fill=mrc))+
  geom_density_ridges()+
  theme_classic()+
  # xlim(-50000,50000)+
  ggtitle("Density of SVA element containing peaks from TSS 20kb filter")+
  xlab("Distancs from TSS (bp)")+
  facet_wrap(~repName)

Past versions of unnamed-chunk-3-1.png

Version	Author	Date
54d28ca	E. Renee Matthews	2025-01-28

  # coord_cartesian(xlim = c(-50000,50000))

Session information

sessionInfo()

R version 4.4.2 (2024-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 26100)

Matrix products: default


locale:
[1] LC_COLLATE=English_United States.utf8 
[2] LC_CTYPE=English_United States.utf8   
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.utf8    

time zone: America/Chicago
tzcode source: internal

attached base packages:
[1] grid      stats4    stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
 [1] ggridges_0.5.6                          
 [2] circlize_0.4.16                         
 [3] epitools_0.5-10.1                       
 [4] ggrepel_0.9.6                           
 [5] plyranges_1.26.0                        
 [6] ggsignif_0.6.4                          
 [7] genomation_1.38.0                       
 [8] smplot2_0.2.4                           
 [9] eulerr_7.0.2                            
[10] biomaRt_2.62.0                          
[11] devtools_2.4.5                          
[12] usethis_3.1.0                           
[13] ggpubr_0.6.0                            
[14] BiocParallel_1.40.0                     
[15] scales_1.3.0                            
[16] VennDiagram_1.7.3                       
[17] futile.logger_1.4.3                     
[18] gridExtra_2.3                           
[19] ggfortify_0.4.17                        
[20] edgeR_4.4.1                             
[21] limma_3.62.1                            
[22] rtracklayer_1.66.0                      
[23] org.Hs.eg.db_3.20.0                     
[24] TxDb.Hsapiens.UCSC.hg38.knownGene_3.20.0
[25] GenomicFeatures_1.58.0                  
[26] AnnotationDbi_1.68.0                    
[27] Biobase_2.66.0                          
[28] GenomicRanges_1.58.0                    
[29] GenomeInfoDb_1.42.1                     
[30] IRanges_2.40.1                          
[31] S4Vectors_0.44.0                        
[32] BiocGenerics_0.52.0                     
[33] ChIPseeker_1.42.0                       
[34] RColorBrewer_1.1-3                      
[35] broom_1.0.7                             
[36] kableExtra_1.4.0                        
[37] lubridate_1.9.4                         
[38] forcats_1.0.0                           
[39] stringr_1.5.1                           
[40] dplyr_1.1.4                             
[41] purrr_1.0.2                             
[42] readr_2.1.5                             
[43] tidyr_1.3.1                             
[44] tibble_3.2.1                            
[45] ggplot2_3.5.1                           
[46] tidyverse_2.0.0                         
[47] workflowr_1.7.1                         

loaded via a namespace (and not attached):
  [1] fs_1.6.5                               
  [2] matrixStats_1.4.1                      
  [3] bitops_1.0-9                           
  [4] enrichplot_1.26.5                      
  [5] doParallel_1.0.17                      
  [6] httr_1.4.7                             
  [7] profvis_0.4.0                          
  [8] tools_4.4.2                            
  [9] backports_1.5.0                        
 [10] utf8_1.2.4                             
 [11] R6_2.5.1                               
 [12] lazyeval_0.2.2                         
 [13] GetoptLong_1.0.5                       
 [14] urlchecker_1.0.1                       
 [15] withr_3.0.2                            
 [16] prettyunits_1.2.0                      
 [17] cli_3.6.3                              
 [18] formatR_1.14                           
 [19] labeling_0.4.3                         
 [20] sass_0.4.9                             
 [21] Rsamtools_2.22.0                       
 [22] systemfonts_1.1.0                      
 [23] yulab.utils_0.1.8                      
 [24] foreign_0.8-87                         
 [25] DOSE_4.0.0                             
 [26] svglite_2.1.3                          
 [27] R.utils_2.12.3                         
 [28] sessioninfo_1.2.2                      
 [29] plotrix_3.8-4                          
 [30] BSgenome_1.74.0                        
 [31] pwr_1.3-0                              
 [32] impute_1.80.0                          
 [33] rstudioapi_0.17.1                      
 [34] RSQLite_2.3.9                          
 [35] shape_1.4.6.1                          
 [36] generics_0.1.3                         
 [37] gridGraphics_0.5-1                     
 [38] TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
 [39] BiocIO_1.16.0                          
 [40] vroom_1.6.5                            
 [41] gtools_3.9.5                           
 [42] car_3.1-3                              
 [43] GO.db_3.20.0                           
 [44] Matrix_1.7-1                           
 [45] abind_1.4-8                            
 [46] R.methodsS3_1.8.2                      
 [47] lifecycle_1.0.4                        
 [48] whisker_0.4.1                          
 [49] yaml_2.3.10                            
 [50] carData_3.0-5                          
 [51] SummarizedExperiment_1.36.0            
 [52] gplots_3.2.0                           
 [53] qvalue_2.38.0                          
 [54] SparseArray_1.6.0                      
 [55] BiocFileCache_2.14.0                   
 [56] blob_1.2.4                             
 [57] promises_1.3.2                         
 [58] crayon_1.5.3                           
 [59] miniUI_0.1.1.1                         
 [60] ggtangle_0.0.6                         
 [61] lattice_0.22-6                         
 [62] cowplot_1.1.3                          
 [63] KEGGREST_1.46.0                        
 [64] magick_2.8.5                           
 [65] ComplexHeatmap_2.22.0                  
 [66] pillar_1.10.0                          
 [67] knitr_1.49                             
 [68] fgsea_1.32.2                           
 [69] rjson_0.2.23                           
 [70] boot_1.3-31                            
 [71] codetools_0.2-20                       
 [72] fastmatch_1.1-6                        
 [73] glue_1.8.0                             
 [74] getPass_0.2-4                          
 [75] ggfun_0.1.8                            
 [76] data.table_1.16.4                      
 [77] remotes_2.5.0                          
 [78] vctrs_0.6.5                            
 [79] png_0.1-8                              
 [80] treeio_1.30.0                          
 [81] gtable_0.3.6                           
 [82] cachem_1.1.0                           
 [83] xfun_0.49                              
 [84] S4Arrays_1.6.0                         
 [85] mime_0.12                              
 [86] iterators_1.0.14                       
 [87] statmod_1.5.0                          
 [88] ellipsis_0.3.2                         
 [89] nlme_3.1-166                           
 [90] ggtree_3.14.0                          
 [91] bit64_4.5.2                            
 [92] filelock_1.0.3                         
 [93] progress_1.2.3                         
 [94] rprojroot_2.0.4                        
 [95] bslib_0.8.0                            
 [96] rpart_4.1.23                           
 [97] KernSmooth_2.23-24                     
 [98] Hmisc_5.2-1                            
 [99] colorspace_2.1-1                       
[100] DBI_1.2.3                              
[101] seqPattern_1.38.0                      
[102] nnet_7.3-19                            
[103] tidyselect_1.2.1                       
[104] processx_3.8.4                         
[105] bit_4.5.0.1                            
[106] compiler_4.4.2                         
[107] curl_6.0.1                             
[108] git2r_0.35.0                           
[109] httr2_1.0.7                            
[110] htmlTable_2.4.3                        
[111] xml2_1.3.6                             
[112] DelayedArray_0.32.0                    
[113] checkmate_2.3.2                        
[114] caTools_1.18.3                         
[115] callr_3.7.6                            
[116] rappdirs_0.3.3                         
[117] digest_0.6.37                          
[118] rmarkdown_2.29                         
[119] XVector_0.46.0                         
[120] base64enc_0.1-3                        
[121] htmltools_0.5.8.1                      
[122] pkgconfig_2.0.3                        
[123] MatrixGenerics_1.18.0                  
[124] dbplyr_2.5.0                           
[125] fastmap_1.2.0                          
[126] GlobalOptions_0.1.2                    
[127] rlang_1.1.4                            
[128] htmlwidgets_1.6.4                      
[129] UCSC.utils_1.2.0                       
[130] shiny_1.10.0                           
[131] farver_2.1.2                           
[132] jquerylib_0.1.4                        
[133] zoo_1.8-12                             
[134] jsonlite_1.8.9                         
[135] GOSemSim_2.32.0                        
[136] R.oo_1.27.0                            
[137] RCurl_1.98-1.16                        
[138] magrittr_2.0.3                         
[139] Formula_1.2-5                          
[140] GenomeInfoDbData_1.2.13                
[141] ggplotify_0.1.2                        
[142] patchwork_1.3.0                        
[143] munsell_0.5.1                          
[144] Rcpp_1.0.13-1                          
[145] ape_5.8-1                              
[146] stringi_1.8.4                          
[147] zlibbioc_1.52.0                        
[148] plyr_1.8.9                             
[149] pkgbuild_1.4.5                         
[150] parallel_4.4.2                         
[151] Biostrings_2.74.1                      
[152] splines_4.4.2                          
[153] hms_1.1.3                              
[154] locfit_1.5-9.10                        
[155] ps_1.8.1                               
[156] igraph_2.1.2                           
[157] reshape2_1.4.4                         
[158] pkgload_1.4.0                          
[159] futile.options_1.0.1                   
[160] XML_3.99-0.17                          
[161] evaluate_1.0.1                         
[162] lambda.r_1.2.4                         
[163] foreach_1.5.2                          
[164] tzdb_0.4.0                             
[165] httpuv_1.6.15                          
[166] clue_0.3-66                            
[167] gridBase_0.4-7                         
[168] xtable_1.8-4                           
[169] restfulr_0.0.15                        
[170] tidytree_0.4.6                         
[171] rstatix_0.7.2                          
[172] later_1.4.1                            
[173] viridisLite_0.4.2                      
[174] aplot_0.2.4                            
[175] memoise_2.0.1                          
[176] GenomicAlignments_1.42.0               
[177] cluster_2.1.8                          
[178] timechange_0.3.0