Last updated: 2025-07-03

Checks: 7 0

Knit directory: Paul_CX_2025/

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File Version Author Date Message
Rmd d35403e sayanpaul01 2025-04-18 Commit
html d35403e sayanpaul01 2025-04-18 Commit

📌 iPSC-CM Purity analysis

# Load libraries
library(ggplot2)

# Data
purity_data <- data.frame(
  Individual = factor(c("Ind 1", "Ind 2", "Ind 3", "Ind 4", "Ind 5", "Ind 6"),
                      levels = c("Ind 1", "Ind 2", "Ind 3", "Ind 4", "Ind 5", "Ind 6")),
  Purity = c(99.7, 99.1, 98.6, 98.0, 98.1, 96.0)
)

# Colors matching your original figure
bar_colors <- c("#FDBE02", "#F50670", "#FB5403", "#933BEB", "#3E97FD", "#3A3F52")

# Plot
ggplot(purity_data, aes(x = Individual, y = Purity, fill = Individual)) +
  geom_bar(stat = "identity", width = 0.8, color = "black") +
  scale_fill_manual(values = bar_colors) +
  labs(title = "Cardiomyocyte Purity (Flow Cytometry)",
       x = "Individual", y = "CM Purity (%)") +
  theme_minimal(base_family = "Arial") +
  theme(
    plot.title = element_text(size = 18, face = "bold", hjust = 0.5),
    axis.title.x = element_text(size = 14, face = "bold"),
    axis.title.y = element_text(size = 14, face = "bold"),
    axis.text = element_text(size = 12),
    legend.position = "none",
    panel.grid.major = element_line(color = "gray70", size = 0.5),
    panel.grid.minor = element_blank(),
    panel.border = element_rect(color = "black", fill = NA, size = 1.2),
    axis.line = element_blank()
  ) +
  ylim(0, 105)
Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
This warning is displayed once every 8 hours.
Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
generated.
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
This warning is displayed once every 8 hours.
Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
generated.
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)): font family
not found in Windows font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)): font family
not found in Windows font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)): font family
not found in Windows font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : font
family not found in Windows font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : font
family not found in Windows font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, : font
family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, :
font family not found in Windows font database

Version Author Date
d35403e sayanpaul01 2025-04-18 

sessionInfo()
R version 4.3.0 (2023-04-21 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 11 x64 (build 26100)

Matrix products: default


locale:
[1] LC_COLLATE=English_United States.utf8 
[2] LC_CTYPE=English_United States.utf8   
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.utf8    

time zone: America/Chicago
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ggplot2_3.5.2   workflowr_1.7.1

loaded via a namespace (and not attached):
 [1] gtable_0.3.6      jsonlite_2.0.0    crayon_1.5.3      dplyr_1.1.4      
 [5] compiler_4.3.0    promises_1.3.2    tidyselect_1.2.1  Rcpp_1.0.12      
 [9] stringr_1.5.1     git2r_0.36.2      callr_3.7.6       later_1.3.2      
[13] jquerylib_0.1.4   scales_1.3.0      yaml_2.3.10       fastmap_1.2.0    
[17] R6_2.6.1          labeling_0.4.3    generics_0.1.3    knitr_1.50       
[21] tibble_3.2.1      munsell_0.5.1     rprojroot_2.0.4   bslib_0.9.0      
[25] pillar_1.10.2     rlang_1.1.3       cachem_1.1.0      stringi_1.8.3    
[29] httpuv_1.6.15     xfun_0.52         getPass_0.2-4     fs_1.6.3         
[33] sass_0.4.10       cli_3.6.1         withr_3.0.2       magrittr_2.0.3   
[37] ps_1.8.1          digest_0.6.34     grid_4.3.0        processx_3.8.6   
[41] rstudioapi_0.17.1 lifecycle_1.0.4   vctrs_0.6.5       evaluate_1.0.3   
[45] glue_1.7.0        farver_2.1.2      whisker_0.4.1     colorspace_2.1-0 
[49] rmarkdown_2.29    httr_1.4.7        tools_4.3.0       pkgconfig_2.0.3  
[53] htmltools_0.5.8.1